Query 028623
Match_columns 206
No_of_seqs 228 out of 1214
Neff 5.0
Searched_HMMs 29240
Date Tue Mar 26 00:12:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_K 60S ribosomal protein L 100.0 1.6E-82 5.4E-87 540.8 18.3 206 1-206 1-206 (206)
2 4a17_I RPL13A, 60S ribosomal p 100.0 2E-78 6.8E-83 513.1 18.3 198 7-206 1-198 (198)
3 4b6a_O 60S ribosomal protein L 100.0 1.4E-74 4.7E-79 489.8 21.4 197 8-206 3-199 (199)
4 2zkr_j 60S ribosomal protein L 100.0 1.9E-76 6.4E-81 502.7 8.5 199 8-206 3-201 (203)
5 3jyw_M 60S ribosomal protein L 100.0 2.2E-61 7.6E-66 403.3 7.0 152 12-163 1-152 (178)
6 1j3a_A 50S ribosomal protein L 100.0 7.3E-59 2.5E-63 376.0 12.1 142 11-154 1-142 (142)
7 1vq8_J 50S ribosomal protein L 100.0 9.3E-58 3.2E-62 370.6 11.7 139 5-154 3-143 (145)
8 3r8s_J 50S ribosomal protein L 100.0 3.6E-47 1.2E-51 307.5 7.1 118 1-129 5-140 (142)
9 3v2d_N 50S ribosomal protein L 100.0 1.3E-46 4.4E-51 303.7 6.7 113 6-129 8-138 (140)
10 2ftc_H L13MT, MRP-L13, 39S rib 100.0 2.3E-45 7.7E-50 298.8 7.8 108 7-121 14-139 (148)
11 3f1f_N 50S ribosomal protein L 100.0 1E-45 3.5E-50 304.4 5.0 114 6-130 31-162 (163)
12 2zjr_G 50S ribosomal protein L 100.0 1.2E-44 4.1E-49 300.9 9.2 115 2-125 34-166 (174)
13 3bbo_L Ribosomal protein L13; 100.0 1.1E-44 3.7E-49 314.0 3.6 126 2-134 102-248 (250)
14 1wi9_A Protein C20ORF116 homol 67.6 4.3 0.00015 28.9 3.1 28 137-164 18-45 (72)
15 3koj_A Uncharacterized protein 57.4 5.6 0.00019 29.8 2.3 23 20-42 59-81 (108)
16 4dam_A Single-stranded DNA-bin 44.1 12 0.00041 28.6 2.3 23 20-42 69-91 (128)
17 3vdy_A SSB, single-stranded DN 41.6 14 0.00048 27.2 2.3 23 20-42 56-78 (116)
18 3ulp_A Single-strand binding p 38.4 18 0.0006 27.1 2.4 23 20-42 60-83 (124)
19 1z9f_A Single-strand binding p 38.1 18 0.00062 28.4 2.5 23 20-42 69-91 (153)
20 2vw9_A Single-stranded DNA bin 37.9 19 0.00064 27.5 2.5 23 20-42 55-77 (134)
21 3stb_C RNA-editing complex pro 37.1 35 0.0012 27.1 4.1 32 8-42 84-115 (148)
22 3i71_A Ethanolamine utilizatio 36.9 23 0.00078 24.5 2.5 30 134-163 12-41 (68)
23 3afp_A Single-stranded DNA-bin 34.7 22 0.00075 28.3 2.5 23 20-42 59-81 (168)
24 1qvc_A Single stranded DNA bin 34.5 22 0.00074 27.5 2.4 23 20-42 59-81 (145)
25 1eqq_A Single stranded DNA bin 34.0 20 0.00068 28.9 2.2 22 20-41 60-81 (178)
26 3ull_A DNA binding protein; DN 32.0 25 0.00085 26.6 2.3 22 21-42 74-96 (132)
27 3tqy_A Single-stranded DNA-bin 31.5 26 0.00087 27.6 2.4 22 21-42 63-84 (158)
28 3k7u_C MP18 RNA editing comple 30.3 25 0.00084 27.7 2.1 23 20-42 58-81 (148)
29 3eiv_A Single-stranded DNA-bin 26.5 36 0.0012 28.1 2.5 23 20-42 59-81 (199)
30 3lgj_A Single-stranded DNA-bin 26.3 35 0.0012 27.2 2.4 22 21-42 78-100 (169)
31 1q7s_A BIT1, protein CGI-147; 26.1 97 0.0033 23.1 4.7 25 8-32 3-28 (117)
32 3k81_C MP18 RNA editing comple 25.3 33 0.0011 27.6 2.1 28 10-41 68-96 (164)
33 3fwz_A Inner membrane protein 24.8 55 0.0019 23.9 3.1 34 6-44 5-39 (140)
34 1txy_A Primosomal replication 24.5 18 0.00063 26.2 0.4 23 20-42 54-76 (104)
35 1wn2_A Peptidyl-tRNA hydrolase 23.2 1.5E+02 0.0051 22.2 5.3 37 8-44 7-63 (121)
36 1nd9_A Translation initiation 23.1 67 0.0023 19.3 2.8 23 141-163 3-25 (49)
37 2zv3_A PTH, peptidyl-tRNA hydr 22.0 1.5E+02 0.0053 21.8 5.2 36 9-44 2-57 (115)
38 1id1_A Putative potassium chan 20.7 66 0.0023 23.7 2.9 30 9-43 4-34 (153)
39 1rlk_A Hypothetical protein TA 20.4 1.7E+02 0.0059 21.6 5.1 38 8-45 3-60 (117)
40 3llv_A Exopolyphosphatase-rela 20.3 74 0.0025 22.8 3.0 30 9-43 7-37 (141)
No 1
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=100.00 E-value=1.6e-82 Score=540.78 Aligned_cols=206 Identities=88% Similarity=1.394 Sum_probs=204.2
Q ss_pred CCCCCcccceEEEEeCCCCcchhHHHHHHHHHhCCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCCCCccccC
Q 028623 1 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRA 80 (206)
Q Consensus 1 ~~~~~~~~~~w~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~g~~~~r~ 80 (206)
|+++++|+++|+||||+||+||||||+||+.|+|||+|||||||+|+|||+++++|+||++|+++++++||..||+|+++
T Consensus 1 ~~~~~~f~r~W~VIDA~g~~LGRLAS~VAk~Ll~Gd~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~np~~~~~~~r~ 80 (206)
T 3iz5_K 1 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRA 80 (206)
T ss_dssp CCCSSSCCSSCCEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHHHHTTCSCSSSCSCCCCS
T ss_pred CccccccceeEEEEeCCCCchHHHHHHHHHHHhCCCEEEEEcCcccCcCCchHhhhhheeeecceeecCCCcccchhhcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCcchHHHHHH
Q 028623 81 PAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKE 160 (206)
Q Consensus 81 P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rky~~LG~Ls~~vGWk~~~vv~~ 160 (206)
|++|||+||+|||||||++|+++|+||+||+|+||||++|++|+||+||++.+|+|+||||+|||||++|||+|++||++
T Consensus 81 P~~Il~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqk~~vvP~al~v~~l~p~rk~~~lg~ls~~~Gwk~~~vv~~ 160 (206)
T 3iz5_K 81 PAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKEVGWNYADTIRE 160 (206)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHTTEEEESSCCTTCCSCCBCCTTTBCBTTBCSSSSCEEEHHHHGGGTCTTHHHHHHH
T ss_pred HHHHHHHHHhccCCCCChhHHHHHhCCEEeCCCCCChhhcccccCchHHhhhhcCCCCCeEEHHHHHHHHCchHHHHHHH
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHhhccCCC
Q 028623 161 LEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 206 (206)
Q Consensus 161 le~krk~k~~~~~~~k~~~~~~~~~a~~~~~~~~~~~~~~l~~~g~ 206 (206)
||++||+++++||++|+++++++++|++++++++++++++|+++||
T Consensus 161 le~krk~k~~~~y~~k~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y 206 (206)
T 3iz5_K 161 LEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIKY 206 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSTTHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999998
No 2
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=100.00 E-value=2e-78 Score=513.09 Aligned_cols=198 Identities=49% Similarity=0.822 Sum_probs=193.5
Q ss_pred ccceEEEEeCCCCcchhHHHHHHHHHhCCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCCCCccccCchHHHH
Q 028623 7 ICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILW 86 (206)
Q Consensus 7 ~~~~w~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~g~~~~r~P~~I~~ 86 (206)
++++|+||||+||+||||||+||+.|+|||+|||||||+|+|||+++++|.||++|+++++++||..||+|+++|++|||
T Consensus 1 ~~~~w~VIDA~g~~LGRLAs~VAk~L~~GD~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~~~~~g~~~~r~P~rIi~ 80 (198)
T 4a17_I 1 MFDKLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNPRRGVQHFRAPSRIFW 80 (198)
T ss_dssp CCSSCEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHHTCCCSSCTTSSCCCCCSHHHHHH
T ss_pred CCccEEEEeCCCCchHHHHHHHHHHHhCCCEEEEEcCccccccCchhhheeeeeeccccccCCCCccccccccCHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCcchHHHHHHHHHHHH
Q 028623 87 RTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRK 166 (206)
Q Consensus 87 raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rky~~LG~Ls~~vGWk~~~vv~~le~krk 166 (206)
+||+|||||||++|+.+|+||+||+|+||||++|++|+||+|+++.+|+|+||||+|||||++|||+|++||++||++||
T Consensus 81 ~AVrGMLPkK~~lGr~~l~rLkVy~G~~hph~aqk~~vvp~al~v~rl~~~rk~~~lg~ls~~~Gwk~~~vv~~le~krk 160 (198)
T 4a17_I 81 RAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDALKVQRLRNSRPVCKLGDLSASVGWGKQTLIEKLEEKRR 160 (198)
T ss_dssp HHHHTTTTTTSHHHHHHHHHCEECSSCCGGGTTSCCBCCGGGBHHHHSCTTSCEEEHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHhccCCCCChhHHHHHhCcEEecCCCCChhhccccccchHhhhhhcCCCCCeEEHHHHHHHhCchHHHHHHHHHHHHH
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHhhccCCC
Q 028623 167 ERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 206 (206)
Q Consensus 167 ~k~~~~~~~k~~~~~~~~~a~~~~~~~~~~~~~~l~~~g~ 206 (206)
+++++||++|+++++++++|+++++++ +++++|++|||
T Consensus 161 ~k~~~~y~~k~~~~~~~~~a~~~~~~~--~~~~~l~~~g~ 198 (198)
T 4a17_I 161 ARAKTYHDKKVKQADARKKELAAPALK--AIKDKLAQFGY 198 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSHHHH--HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHcCC
Confidence 999999999999999999999988776 59999999998
No 3
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=100.00 E-value=1.4e-74 Score=489.78 Aligned_cols=197 Identities=52% Similarity=0.886 Sum_probs=190.2
Q ss_pred cceEEEEeCCCCcchhHHHHHHHHHhCCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCCCCccccCchHHHHH
Q 028623 8 CAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWR 87 (206)
Q Consensus 8 ~~~w~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~g~~~~r~P~~I~~r 87 (206)
+++|+||||+||+||||||+||+.|+.||+|||||||+|+|||+++++|+||+++.++++..+|..||+|+++|++||++
T Consensus 3 ~~~~vVIDA~g~vLGRLAS~VAk~L~~Gd~VVVVNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~~~~r~P~~il~~ 82 (199)
T 4b6a_O 3 SQPVVVIDAKDHLLGRLASTIAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYK 82 (199)
T ss_dssp CCSEEEEECTTBBHHHHHHHHHHHHHTTCEEEEECGGGCEEESCHHHHHHHHHHHHTCCCTTCTTTSCCCCCSHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCEEEEEEchheEEeCcHHHHHHHhhccccccccccCCHHHHhhcCcHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999888888888888899999999999999
Q ss_pred HHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCcchHHHHHHHHHHHHH
Q 028623 88 TIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKE 167 (206)
Q Consensus 88 aVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rky~~LG~Ls~~vGWk~~~vv~~le~krk~ 167 (206)
||||||||||++|+.+|+||+||+|+||||++|+++++|+|+++.+|+|+||||+|||||++|||||+|||++||++||+
T Consensus 83 aVrGMLP~K~~lGr~~l~rLkVy~G~~hph~aqk~~vvp~Al~~~~lkp~~Ky~~lg~ls~~~Gwk~~~vv~~le~krk~ 162 (199)
T 4b6a_O 83 AIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKV 162 (199)
T ss_dssp HHHTTSCTTSHHHHHHHHTEEECSSCCSGGGGSCCBBCGGGBHHHHSCTTCCEEEHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHhccCCCCChhhhHHHhccEEeCCCCCCcccCCCEecchHHHhhccCCCCCeEEhhhhHHHhCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHhhccCCC
Q 028623 168 RAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 206 (206)
Q Consensus 168 k~~~~~~~k~~~~~~~~~a~~~~~~~~~~~~~~l~~~g~ 206 (206)
++++||++|+++++++++|.++++. ++++++|+++||
T Consensus 163 k~~~~~~~k~~~~k~~~~a~~~~~~--~~~~~~l~~~gy 199 (199)
T 4b6a_O 163 RSAEYYAKKRAFTKKVASANATAAE--SDVAKQLAALGY 199 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHcCC
Confidence 9999999999999999999887754 578999999998
No 4
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.9e-76 Score=502.65 Aligned_cols=199 Identities=55% Similarity=0.967 Sum_probs=133.7
Q ss_pred cceEEEEeCCCCcchhHHHHHHHHHhCCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCCCCccccCchHHHHH
Q 028623 8 CAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWR 87 (206)
Q Consensus 8 ~~~w~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~g~~~~r~P~~I~~r 87 (206)
.++|+||||+||+||||||+||++||.||+|||||||+|+|||+++++|+||.+|+++++++||..|++|+++|++|||+
T Consensus 3 ~r~w~VIDA~g~~LGRLAS~VAk~lL~G~~VVVINaeki~iTG~k~~~K~yy~~h~~~~~~~n~~~G~~~~r~P~~I~~~ 82 (203)
T 2zkr_j 3 EVQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSRGPYDFRAPSRIFWR 82 (203)
T ss_dssp ----CEEECTTBBHHHHHHHHHHHHHHTCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSSCCCCCCSHHHHHHH
T ss_pred CccEEEEeCCCCchHHHHHHHHHHHhCCCeEEEEchHHeecCchHHHHHHHHHHHHhhcccCCCCCCccccCChHHHHHH
Confidence 68999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCcchHHHHHHHHHHHHH
Q 028623 88 TIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKE 167 (206)
Q Consensus 88 aVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rky~~LG~Ls~~vGWk~~~vv~~le~krk~ 167 (206)
||+||||+||++|+.+|+||+||+|+||||++|+++++|+|+++.+++|+++||||||||++|||+|+|||++||++||+
T Consensus 83 AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqkp~vvp~a~~v~~~~~~~ky~~lg~ls~~~Gwk~~~vv~~le~kRk~ 162 (203)
T 2zkr_j 83 TVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKE 162 (203)
T ss_dssp HHHHHSCTTSHHHHHHHHTEEECSCSSCSSSSCCBCCGGGBCCSSSSSCCSCEEEHHHHC--------------------
T ss_pred HHHhhCCCCChhHHHHHhCcEEeCCCCCchhhcCCcccchhhhhhhcCCCCceEEHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHhhccCCC
Q 028623 168 RAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 206 (206)
Q Consensus 168 k~~~~~~~k~~~~~~~~~a~~~~~~~~~~~~~~l~~~g~ 206 (206)
++++||++|+++++++++|++++++++++++++|+++||
T Consensus 163 k~~~~y~~kk~~~~~~~~a~~~~~~~~~~~~~~l~~~g~ 201 (203)
T 2zkr_j 163 KAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGL 201 (203)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHcCC
Confidence 999999999999999999999999999999999999998
No 5
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=100.00 E-value=2.2e-61 Score=403.27 Aligned_cols=152 Identities=55% Similarity=0.972 Sum_probs=147.7
Q ss_pred EEEeCCCCcchhHHHHHHHHHhCCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCCCCccccCchHHHHHHHhc
Q 028623 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRG 91 (206)
Q Consensus 12 ~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~g~~~~r~P~~I~~raVrG 91 (206)
+||||+||+||||||+||+.|+|||+|||||||+|+|||+++++|+||++|+++++++||..|++|+++|++|||++|||
T Consensus 1 ~VIDA~g~~LGRLAs~VAk~L~~GD~VVVINaeki~iTG~K~~~K~yy~h~l~~~~~~~~~~~~~~~r~P~~Il~~AVrG 80 (178)
T 3jyw_M 1 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRG 80 (178)
T ss_dssp CCCCCCSSCSHHHHHHHHHHHTTTCCCCEECSTTSCCCCCSSHHHHSCSSSSSSTTSCCCSSSCCCCSSTTTHHHHHTTS
T ss_pred CEEcCCCCchHHHHHHHHHHHhCCCEEEEEeCeeeEEcCchHhhEhheeccCcccccCCccccccccCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred cCCCCChhhHHHhhcCccccCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCcchHHHHHHHHH
Q 028623 92 MIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEK 163 (206)
Q Consensus 92 MLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rky~~LG~Ls~~vGWk~~~vv~~le~ 163 (206)
||||||++|+.+|+||+||+|+||||+.|+++++|+++++.+++|+++||+|||||+++||+|+++|+.--+
T Consensus 81 MLP~K~~lGr~~l~rLkVy~G~~hp~~aqk~~vvp~Alrv~RLkp~rKy~tLGels~~vGwk~~~~~~~~~~ 152 (178)
T 3jyw_M 81 MVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKAAAAAAAAAA 152 (178)
T ss_dssp SSCSSSHHHHHHHHHCCEESSCCCCSCCSCSSSCCSSCCCCCSSSCSCCCCHHHHSSTTTCCCHHHHHTHHH
T ss_pred HhhcccHhHHHHHhCCeeeCCCCCchhhcccccCchHhhhhccCCCCceEEcchhhhhcCCcchhhHHHHHH
Confidence 999889999999999999999999999999999999999999999999999999999999999999976543
No 6
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=100.00 E-value=7.3e-59 Score=376.05 Aligned_cols=142 Identities=37% Similarity=0.549 Sum_probs=124.5
Q ss_pred EEEEeCCCCcchhHHHHHHHHHhCCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCCCCccccCchHHHHHHHh
Q 028623 11 RVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIR 90 (206)
Q Consensus 11 w~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~g~~~~r~P~~I~~raVr 90 (206)
|+||||+||+||||||+||+.|+|||+|||||||+|+|||+++++|.||+++.+..+..+|..+++++++|++|||+||+
T Consensus 1 W~viDA~g~~LGRLAs~vAk~L~~Gd~VVViNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~~~~r~P~~ii~~aVr 80 (142)
T 1j3a_A 1 MRIINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIR 80 (142)
T ss_dssp CEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHC-------------CCCSHHHHHHHHHH
T ss_pred CEEEeCCCCchHHHHHHHHHHHhcCCEEEEEeCeeeEecccHHhheeeeeecCCCCCCcCCccCcccccCHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999998544444444443389999999999999999
Q ss_pred ccCCCCChhhHHHhhcCccccCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCcch
Q 028623 91 GMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNY 154 (206)
Q Consensus 91 GMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rky~~LG~Ls~~vGWk~ 154 (206)
|||||||++|+++|+||+||+|+||||++|+++++|.|+. .+++ ++|||+|||||++|||||
T Consensus 81 GMLP~k~~lgr~~l~rLkVy~G~~hp~~aqkp~~~~~a~~-~~~~-~~k~~~lg~ls~~~Gwk~ 142 (142)
T 1j3a_A 81 GMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHV-SRLS-RPKYVTVGEVAKFLGGKF 142 (142)
T ss_dssp TTTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCCGGGBG-GGSS-SCCEEEHHHHHHHHTCCC
T ss_pred hhccCCCHHHHHHHhCcEEeCCCCCCccccCcEeccHHHh-hccC-CCCeEEHHHHHHHhCCCC
Confidence 9999989999999999999999999999999999999985 6775 899999999999999997
No 7
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=100.00 E-value=9.3e-58 Score=370.65 Aligned_cols=139 Identities=34% Similarity=0.492 Sum_probs=131.1
Q ss_pred CcccceEEEEeCCCCcchhHHHHHHHHHhCCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCC--CCccccCch
Q 028623 5 SGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSH--GPIHFRAPA 82 (206)
Q Consensus 5 ~~~~~~w~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~--g~~~~r~P~ 82 (206)
.+++++|+||||+||+||||||+||+.|+|||+|||||||+|+|||+++++|.||+ |++|||+ +++|+++|+
T Consensus 3 ~a~~~~w~viDA~g~~LGRLAs~vAk~L~~Gd~VVViNaeki~iTG~k~~~K~yy~------htg~~g~~~~~~~~r~P~ 76 (145)
T 1vq8_J 3 VAEFDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYE------KRVDIGNDNGYFYPKRPD 76 (145)
T ss_dssp -CCCCCSEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHH------HHHHCCCSSCCCCCCSHH
T ss_pred ccccccEEEEeCCCCchHHHHHHHHHHHhcCCEEEEEeCEeeEecchhhhheeeeE------EeCCCCCCHHHHhhcChH
Confidence 45788999999999999999999999999999999999999999999999999998 6777764 899999999
Q ss_pred HHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCcch
Q 028623 83 KILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNY 154 (206)
Q Consensus 83 ~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rky~~LG~Ls~~vGWk~ 154 (206)
+||++||+|||||||++|+++|+||+||+|+||| |+++++|.|+. .+++ ++|||+|||||++|||||
T Consensus 77 ~i~~~aVrGMLP~K~~lgr~~l~rLkVy~G~~~p---~k~~vv~~a~~-~~l~-~~k~~~lg~ls~~~Gwk~ 143 (145)
T 1vq8_J 77 GIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYD---EDGEVLDGTSL-DRLS-NIKFVTLGEISETLGANK 143 (145)
T ss_dssp HHHHHHHHTTTTTTSHHHHHHHHTEEECSSCCSS---SCCBCCTTCBC-CTTS-CCSEEEHHHHHHHHTCCC
T ss_pred HHHHHHHHhhcCCCCHHHHHHHhCeEEECCCCCC---CCceeeehhhh-hccC-CCCeEEHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999 89999999975 6775 899999999999999998
No 8
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=100.00 E-value=3.6e-47 Score=307.55 Aligned_cols=118 Identities=26% Similarity=0.439 Sum_probs=112.7
Q ss_pred CCCCCcccceEEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhccccc
Q 028623 1 MVSGSGICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMN 68 (206)
Q Consensus 1 ~~~~~~~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~ 68 (206)
|+++..+.++|+||||+||+||||||+||+.|+ |||+|||||||+|+|||+++++|.||+ |+
T Consensus 5 ~~~~~~~~r~W~viDA~g~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~------ht 78 (142)
T 3r8s_J 5 TAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYH------HT 78 (142)
T ss_dssp CCCTTTCCCCEEEEECTTCBHHHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCBCCE------EC
T ss_pred cCChhhccCcEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcccCccCchhhceEEEE------ec
Confidence 578899999999999999999999999999999 999999999999999999999999996 99
Q ss_pred ccCCC------CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchh
Q 028623 69 TKPSH------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDAL 129 (206)
Q Consensus 69 ~~P~~------g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al 129 (206)
+|||+ +++++++|++|||+||+|||| ||++|+.+|+||+||+|+||||++|+ |..|
T Consensus 79 gypGg~k~~~~~~~~~r~P~~ii~~aVrGMLP-kn~lgr~~l~rLkVy~G~~hph~aq~----p~~l 140 (142)
T 3r8s_J 79 GHIGGIKQATFEEMIARRPERVIEIAVKGMLP-KGPLGRAMFRKLKVYAGNEHNHAAQQ----PQVL 140 (142)
T ss_dssp SSTTCEECCBHHHHHHHCSHHHHHHHHHHHSC-SSHHHHHHHTTEEECSSSCCSCGGGC----CEEC
T ss_pred CcCCCccccCHHHHHhhCHHHHHHHHHHhcCC-CChhHHHHHhCCEEECCCCCCcccCC----Ceec
Confidence 99986 889999999999999999999 69999999999999999999999999 7654
No 9
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=100.00 E-value=1.3e-46 Score=303.69 Aligned_cols=113 Identities=30% Similarity=0.488 Sum_probs=108.7
Q ss_pred cccceEEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCC
Q 028623 6 GICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSH 73 (206)
Q Consensus 6 ~~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~ 73 (206)
.+.++|+||||+||+||||||+||+.|+ |||+|||||||+|+|||+++++|.||+ |++|||+
T Consensus 8 ~~~r~w~viDA~~~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~------htgypGg 81 (140)
T 3v2d_N 8 QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTR------YSGYPGG 81 (140)
T ss_dssp CCCCCEEEEECSSSBTTHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCEEEE------ECSSTTC
T ss_pred cccceEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcceEccCchhhheeeEE------ecccCCc
Confidence 7899999999999999999999999998 999999999999999999999999996 9999986
Q ss_pred ------CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchh
Q 028623 74 ------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDAL 129 (206)
Q Consensus 74 ------g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al 129 (206)
+++++++|++|||+||+||||+ |++|+++|+||+||+|+||||++|+ |.+|
T Consensus 82 lk~~~~~~~~~r~P~~ii~~aVrGMLPk-~~lgr~~l~rLkVy~G~~hph~aq~----p~~~ 138 (140)
T 3v2d_N 82 LKKIPLEKMLATHPERVLEHAVKGMLPK-GPLGRRLFKRLKVYAGPDHPHQAQR----PEKL 138 (140)
T ss_dssp EEEEEHHHHHHHCTHHHHHHHHHHTSCS-SHHHHHHHHTEEECSSSCCSCGGGC----CEEE
T ss_pred ceeccHHHhhhhCHHHHHHHHHHhcCCC-ChhHHHHHhCCEEeCCCCCCcccCC----Ceec
Confidence 8999999999999999999995 9999999999999999999999999 7665
No 10
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=2.3e-45 Score=298.83 Aligned_cols=108 Identities=25% Similarity=0.370 Sum_probs=104.9
Q ss_pred ccceEEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCC-
Q 028623 7 ICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSH- 73 (206)
Q Consensus 7 ~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~- 73 (206)
|.++|+||||+||+||||||+||+.|+ |||+|||||||+|+|||+++++|.||+ |++|||+
T Consensus 14 ~~r~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~~D~Gd~VVViNaeki~~tG~k~~~K~yy~------htg~pGg~ 87 (148)
T 2ftc_H 14 FARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSS------HTGYPGGF 87 (148)
T ss_pred ccCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCccccCCCEEEEEeceeeEeccchHhhheeee------eeCCcCCc
Confidence 389999999999999999999999999 999999999999999999999999997 9999986
Q ss_pred -----CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccc
Q 028623 74 -----GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTK 121 (206)
Q Consensus 74 -----g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k 121 (206)
+++++++|++|||+||+||||+ |++|+.+|+||+||+|.+|||+.|+
T Consensus 88 k~~~~~~~~~r~P~~ii~~aVrGMLPk-n~lgr~~l~rLkVy~G~~hP~~aq~ 139 (148)
T 2ftc_H 88 RQVTAAQLHLRDPVAIVKLAIYGMLPK-NLHRRTMMERLHLFPDEYIPEDILK 139 (148)
T ss_pred eeccHHHHhhcCHHHHHHHHHHhcCCC-CchHHHHHhCcEEeCCCCCChHHhC
Confidence 8999999999999999999995 8999999999999999999999999
No 11
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=100.00 E-value=1e-45 Score=304.43 Aligned_cols=114 Identities=30% Similarity=0.487 Sum_probs=108.5
Q ss_pred cccceEEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCC
Q 028623 6 GICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSH 73 (206)
Q Consensus 6 ~~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~ 73 (206)
.+.++|+||||+||+||||||+||+.|+ |||+|||||||+|+|||+++++|.||+ |++|||+
T Consensus 31 ~~~r~W~VIDA~g~~LGRLAs~VAk~L~GKhKP~ytP~~D~GD~VVVINaekI~iTG~K~~~K~yy~------htgypGg 104 (163)
T 3f1f_N 31 QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTR------YSGYPGG 104 (163)
T ss_dssp CCCCCBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGCBCSTTHHHHCEECC------BCSSTTC
T ss_pred cccCcEEEEeCCCCchHHHHHHHHHHHhcCCCCccCCcccCCCEEEEEeCcccccCCchhhheeeEE------ecCcCCc
Confidence 7899999999999999999999999998 999999999999999999999999996 9999986
Q ss_pred ------CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchhh
Q 028623 74 ------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALK 130 (206)
Q Consensus 74 ------g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~ 130 (206)
+++++++|++|||+||+||||+ |++|+++|+||+||+|+||||++|+ |.+++
T Consensus 105 lk~~t~~~~~~r~P~~Ii~~AVrGMLPk-n~lGr~~l~rLkVY~G~~hPh~aQ~----P~~l~ 162 (163)
T 3f1f_N 105 LKKIPLEKMLATHPERVLEHAVKGMLPK-GPLGRRLFKRLKVYAGPDHPHQAQR----PEKLE 162 (163)
T ss_dssp BCCEEHHHHHHSSCHHHHHHHHHTTSCS-SHHHHHHHHTCEECSSSCCCCCSCC----CBCC-
T ss_pred ceeeehHHhhhcCHHHHHHHHHHhcCCC-ChhHHHHHhCCEEECCCCCCcccCC----CeecC
Confidence 8899999999999999999995 9999999999999999999999999 76653
No 12
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=100.00 E-value=1.2e-44 Score=300.87 Aligned_cols=115 Identities=27% Similarity=0.404 Sum_probs=108.7
Q ss_pred CCCCcccceEEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhcccccc
Q 028623 2 VSGSGICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNT 69 (206)
Q Consensus 2 ~~~~~~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~ 69 (206)
+++ +.++|+||||+||+||||||+||+.|+ |||+|||||||+|+|||+++++|.||+ |++
T Consensus 34 ~k~--~~r~W~vIDA~g~~LGRLAs~IAk~L~GKhKP~ytP~~D~GD~VVVINAeki~lTG~K~~~K~yy~------htg 105 (174)
T 2zjr_G 34 PKN--DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTR------YTG 105 (174)
T ss_dssp CCC--SCCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSCSSSSCEEEE------CCS
T ss_pred cCc--ccccEEEEeCCCCchHHHHHHHHHHHhccCCCccCccccCCCEEEEEeCeeeEeccchhhceEEEE------ecC
Confidence 445 889999999999999999999999999 999999999999999999999999996 999
Q ss_pred cCCC------CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccccccC
Q 028623 70 KPSH------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVI 125 (206)
Q Consensus 70 ~P~~------g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vv 125 (206)
|||+ +++++++|++|||+||+||||+ |++|+++|+||+||+|+||||++|+.+++
T Consensus 106 ypGGlk~~~~~~~~~r~P~~Ii~~AVrGMLPk-n~lGr~~l~rLkVy~G~~hph~aqkp~~l 166 (174)
T 2zjr_G 106 YQGGLKTETAREALSKHPERVIEHAVFGMLPK-GRQGRAMHTRLKVYAGETHPHSAQKPQVL 166 (174)
T ss_dssp SCSSCCEEEESTTTTSCHHHHHHHHHGGGSCC-SHHHHHHHTTCEECSCSTGGGGSCCSCCC
T ss_pred cCCCcccccHHHHhhcChHHHHHHHHHhcCCC-ChhHHHHHhCeEEECCCCCChhccCCeEE
Confidence 9986 8999999999999999999995 99999999999999999999999994444
No 13
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=1.1e-44 Score=313.99 Aligned_cols=126 Identities=29% Similarity=0.451 Sum_probs=103.8
Q ss_pred CCCCc---ccceEEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhccc
Q 028623 2 VSGSG---ICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKR 66 (206)
Q Consensus 2 ~~~~~---~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr 66 (206)
+++.. +.++|+||||+||+||||||+||+.|+ |||+|||||||+|+|||+++++|.||+
T Consensus 102 ~k~~~v~~~~r~W~VIDA~g~vLGRLAS~IAk~LrGKhKP~ytP~vD~GD~VVVINAeKI~lTG~K~~~K~Y~r------ 175 (250)
T 3bbo_L 102 PKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRR------ 175 (250)
T ss_dssp ----------CCCCEECCSSCCSSTTHHHHTTTTTTTTTTCCCTTSCCSCCCEESCCSSCCCCSGGGGTCCCBC------
T ss_pred CChhhcccccceEEEEeCCCCchHHHHHHHHHHHccCCCCccCccccCCCEEEEEecceEEecCChhhceEEEE------
Confidence 45555 589999999999999999999999999 999999999999999999999999764
Q ss_pred ccccCCC------CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchhhhhhc
Q 028623 67 MNTKPSH------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRL 134 (206)
Q Consensus 67 ~~~~P~~------g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl 134 (206)
|++|||+ +++|+++|++|||+||+||||+ |++|+.+|+||+||+|.+|||++|+.+++|.++++.+|
T Consensus 176 HsgyPGGlK~~t~~~l~~r~PerIi~kAVrGMLPk-n~lGr~~lkrLkVY~G~~HPh~aQkp~~l~ia~k~v~~ 248 (250)
T 3bbo_L 176 HSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPK-GRLGRYLFNHLKVYKGAEHPHQAQQPIDLPLRDKRIRV 248 (250)
T ss_dssp CCSSSSCCCBCCHHHHTTSCTTHHHHHHHHTTSCS-SSSHHHHHTTCCCCSSSCCSCTTSCC------------
T ss_pred ecCcCCCcccccHHHhhhcChHHHHHHHHHhcCCC-CchHHHHHhCcEEeCCCCCCHHHcCCeeechhhheeec
Confidence 9999986 7899999999999999999995 99999999999999999999999999999999887766
No 14
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=67.65 E-value=4.3 Score=28.88 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=25.4
Q ss_pred CCCeeehhhhhhhhCcchHHHHHHHHHH
Q 028623 137 GHKYCLLGRLSSEVGWNYYDTIKELEKK 164 (206)
Q Consensus 137 ~rky~~LG~Ls~~vGWk~~~vv~~le~k 164 (206)
.+|-+.|.+||.++|-+-+++++++++-
T Consensus 18 ~~Kvv~LedLA~~F~l~t~~~i~RI~~L 45 (72)
T 1wi9_A 18 KSKVVLLEDLAFQMGLRTQDAINRIQDL 45 (72)
T ss_dssp HCSEECHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HcCeeeHHHHHHHhCCChHHHHHHHHHH
Confidence 4689999999999999999999988764
No 15
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=57.43 E-value=5.6 Score=29.82 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=20.1
Q ss_pred cchhHHHHHHHHHhCCCeEEEEe
Q 028623 20 MLGRLASVLAKELLNGQKVVVVR 42 (206)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVVN 42 (206)
..|+||..+++.|..||.|.|--
T Consensus 59 ~wgk~AE~~~~yl~KG~~V~VeG 81 (108)
T 3koj_A 59 GWGAVAQELQDRCRLNDEVVLEG 81 (108)
T ss_dssp EETHHHHHHHHHCCTTCEEEEEE
T ss_pred EEhHHHHHHHHhCCCCCEEEEEE
Confidence 35899999999999999998854
No 16
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=44.07 E-value=12 Score=28.59 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=20.1
Q ss_pred cchhHHHHHHHHHhCCCeEEEEe
Q 028623 20 MLGRLASVLAKELLNGQKVVVVR 42 (206)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVVN 42 (206)
..|++|..+++.|..||.|+|.-
T Consensus 69 ~wg~~Ae~~~~~l~KG~~V~VeG 91 (128)
T 4dam_A 69 ANRQLATNASGSLAVGDPVVVQG 91 (128)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEcHHHHHHHHhcCCCCEEEEEE
Confidence 35899999999999999998864
No 17
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=41.65 E-value=14 Score=27.18 Aligned_cols=23 Identities=22% Similarity=0.047 Sum_probs=19.8
Q ss_pred cchhHHHHHHHHHhCCCeEEEEe
Q 028623 20 MLGRLASVLAKELLNGQKVVVVR 42 (206)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVVN 42 (206)
..|++|..+++.|..|+.|.|.-
T Consensus 56 ~wg~~Ae~~~~~l~KG~~V~V~G 78 (116)
T 3vdy_A 56 LWRKTAENTALYCQKGSLVGVSG 78 (116)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEEE
T ss_pred EECHHHHHHHHhCCCCCEEEEEE
Confidence 46899999999999999988763
No 18
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=38.39 E-value=18 Score=27.07 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=19.8
Q ss_pred cch-hHHHHHHHHHhCCCeEEEEe
Q 028623 20 MLG-RLASVLAKELLNGQKVVVVR 42 (206)
Q Consensus 20 iLG-RLAS~VAk~Ll~Gd~VVVVN 42 (206)
..| +||..+++.|..|+.|.|.-
T Consensus 60 ~wg~~~Ae~~~~~l~KG~~V~V~G 83 (124)
T 3ulp_A 60 VYDQNIVDLIDKYLRKGRRVYVQG 83 (124)
T ss_dssp ECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEEchHHHHHHhhcCCCCEEEEEE
Confidence 357 89999999999999998864
No 19
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=38.14 E-value=18 Score=28.42 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=19.9
Q ss_pred cchhHHHHHHHHHhCCCeEEEEe
Q 028623 20 MLGRLASVLAKELLNGQKVVVVR 42 (206)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVVN 42 (206)
..|++|..+++.|..|+.|.|.-
T Consensus 69 ~wg~~Ae~~~~~l~KG~~V~VeG 91 (153)
T 1z9f_A 69 TFGRLAEFARTYLTKGRLVLVEG 91 (153)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEEE
T ss_pred EECHHHHHHHhhCCCCCEEEEEE
Confidence 35899999999999999998864
No 20
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=37.86 E-value=19 Score=27.47 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=19.2
Q ss_pred cchhHHHHHHHHHhCCCeEEEEe
Q 028623 20 MLGRLASVLAKELLNGQKVVVVR 42 (206)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVVN 42 (206)
..|++|..+++.|..|+.|.|.-
T Consensus 55 ~wg~~Ae~~~~~l~KG~~V~V~G 77 (134)
T 2vw9_A 55 LFGRTAEIANQYLSKGSSVLIEG 77 (134)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEcHHHHHHHHhCCCCCEEEEEE
Confidence 36899999999999888887753
No 21
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=37.05 E-value=35 Score=27.13 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=26.9
Q ss_pred cceEEEEeCCCCcchhHHHHHHHHHhCCCeEEEEe
Q 028623 8 CAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVR 42 (206)
Q Consensus 8 ~~~w~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVN 42 (206)
..+|+-|=+-| |.||..|.+.|..|++|+|.-
T Consensus 84 ~tdf~~V~vfG---g~lAE~i~~ylkkG~rVlVeG 115 (148)
T 3stb_C 84 DKDFHTVRVFD---SDYSSRVKEQLRDGEWFLVTG 115 (148)
T ss_dssp SEEEEEEEECS---HHHHHHHHHHCCTTCEEEEEE
T ss_pred ccceEEEEEEC---ChHHHHHHHHhcCCCEEEEEE
Confidence 45677777766 899999999999999998864
No 22
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=36.90 E-value=23 Score=24.50 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=22.7
Q ss_pred cCCCCCeeehhhhhhhhCcchHHHHHHHHH
Q 028623 134 LQKGHKYCLLGRLSSEVGWNYYDTIKELEK 163 (206)
Q Consensus 134 l~p~rky~~LG~Ls~~vGWk~~~vv~~le~ 163 (206)
|.+-+.=.|.||+|..+||.....-..||.
T Consensus 12 l~s~~QGMTaGEVAA~f~w~Le~ar~aLeq 41 (68)
T 3i71_A 12 LTSVRQGMTAGEVAAHFGWPLEKARNALEQ 41 (68)
T ss_dssp HHHCTTCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHhccccHHHHHHHhCCcHHHHHHHHHH
Confidence 444577899999999999987666555553
No 23
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=34.67 E-value=22 Score=28.27 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.0
Q ss_pred cchhHHHHHHHHHhCCCeEEEEe
Q 028623 20 MLGRLASVLAKELLNGQKVVVVR 42 (206)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVVN 42 (206)
+.|++|..+++.|..|+.|+|.-
T Consensus 59 ~wg~~Ae~~~~~l~KG~~V~VeG 81 (168)
T 3afp_A 59 IWREAAENVAESLTRGARVIVTG 81 (168)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEEE
T ss_pred EehHHHHHHHHhCCCCCEEEEEE
Confidence 34899999999999999998863
No 24
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=34.48 E-value=22 Score=27.50 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=19.7
Q ss_pred cchhHHHHHHHHHhCCCeEEEEe
Q 028623 20 MLGRLASVLAKELLNGQKVVVVR 42 (206)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVVN 42 (206)
+.|++|..+++.|..|+.|.|.-
T Consensus 59 ~wg~~Ae~~~~~l~KG~~V~V~G 81 (145)
T 1qvc_A 59 LFGKLAEVASEYLRKGSQVYIEG 81 (145)
T ss_dssp EETHHHHHHHHHCCTTCEEEEEE
T ss_pred EehHHHHHHHHhcCCCCEEEEEE
Confidence 35789999999999999998863
No 25
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=33.99 E-value=20 Score=28.87 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.1
Q ss_pred cchhHHHHHHHHHhCCCeEEEE
Q 028623 20 MLGRLASVLAKELLNGQKVVVV 41 (206)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVV 41 (206)
+.|+||..+++.|..|+.|.|.
T Consensus 60 ~wg~~Ae~~~~~l~KG~~V~Ve 81 (178)
T 1eqq_A 60 LFGKLAEVASEYLRKGSQVYIE 81 (178)
T ss_dssp ECHHHHHHHHHHCCTTCEEEEC
T ss_pred EccHHHHHHHHhcCCCCEEEEE
Confidence 4688999999999999988875
No 26
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=32.02 E-value=25 Score=26.57 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=18.8
Q ss_pred ch-hHHHHHHHHHhCCCeEEEEe
Q 028623 21 LG-RLASVLAKELLNGQKVVVVR 42 (206)
Q Consensus 21 LG-RLAS~VAk~Ll~Gd~VVVVN 42 (206)
.| ++|..+++.|..|+.|.|.-
T Consensus 74 wg~~~Ae~~~~~l~KG~~V~V~G 96 (132)
T 3ull_A 74 FRPGLRDVAYQYVKKGSRIYLEG 96 (132)
T ss_dssp CSTTHHHHHHHHCCTTCEEEEEE
T ss_pred EchHHHHHHHhhCCCCCEEEEEE
Confidence 45 69999999999999988853
No 27
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=31.49 E-value=26 Score=27.60 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.3
Q ss_pred chhHHHHHHHHHhCCCeEEEEe
Q 028623 21 LGRLASVLAKELLNGQKVVVVR 42 (206)
Q Consensus 21 LGRLAS~VAk~Ll~Gd~VVVVN 42 (206)
.|+||..+++.|..|+.|.|.-
T Consensus 63 wg~~Ae~~~~~l~KG~~V~VeG 84 (158)
T 3tqy_A 63 FNRLAEIVGEYLRKGSKIYIEG 84 (158)
T ss_dssp ETHHHHHHHHHCCTTCEEEEEE
T ss_pred EhHHHHHHHhhcCCCCEEEEEE
Confidence 6889999999999999888854
No 28
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=30.28 E-value=25 Score=27.68 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=19.6
Q ss_pred cchhH-HHHHHHHHhCCCeEEEEe
Q 028623 20 MLGRL-ASVLAKELLNGQKVVVVR 42 (206)
Q Consensus 20 iLGRL-AS~VAk~Ll~Gd~VVVVN 42 (206)
+.|++ |..+++.|..|+.|.|.-
T Consensus 58 ~wgk~lAe~~~~yl~KG~~V~VeG 81 (148)
T 3k7u_C 58 CFGELFSAEVKQKVKEGNVVCVNG 81 (148)
T ss_dssp EESHHHHHHHHHHCCTTCEEEEEE
T ss_pred EECcHHHHHHHhhCCCCCEEEEEE
Confidence 35676 999999999999998864
No 29
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=26.51 E-value=36 Score=28.15 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=19.8
Q ss_pred cchhHHHHHHHHHhCCCeEEEEe
Q 028623 20 MLGRLASVLAKELLNGQKVVVVR 42 (206)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVVN 42 (206)
+.|+||..+++.|..|+.|+|.-
T Consensus 59 awgklAE~v~~~L~KG~~V~VeG 81 (199)
T 3eiv_A 59 VWRQAAENVAESLQRGMRVIVQG 81 (199)
T ss_dssp EETHHHHHHHHHCCTTCEEEEEE
T ss_pred EEhHHHHHHHHhcCCCCEEEEEE
Confidence 35889999999999999998853
No 30
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=26.26 E-value=35 Score=27.17 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.3
Q ss_pred chh-HHHHHHHHHhCCCeEEEEe
Q 028623 21 LGR-LASVLAKELLNGQKVVVVR 42 (206)
Q Consensus 21 LGR-LAS~VAk~Ll~Gd~VVVVN 42 (206)
.|+ ||..+++.|..|+.|.|.-
T Consensus 78 wg~~lAe~~~~~l~KG~~V~VeG 100 (169)
T 3lgj_A 78 FNPHFAKIALQYLHKGSKVYIEG 100 (169)
T ss_dssp CCHHHHHHHHHHCCTTCEEEEEE
T ss_pred eCHHHHHHHHHhCCCCCEEEEEE
Confidence 577 9999999999999998864
No 31
>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1
Probab=26.06 E-value=97 Score=23.06 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=18.5
Q ss_pred cceEEEEeCC-CCcchhHHHHHHHHH
Q 028623 8 CAKRVVVDAR-HHMLGRLASVLAKEL 32 (206)
Q Consensus 8 ~~~w~vIDA~-g~iLGRLAS~VAk~L 32 (206)
.+..+||..+ +.-.|.+|+++|..-
T Consensus 3 ~K~vivvr~dL~m~~GKiaAQ~~HAa 28 (117)
T 1q7s_A 3 YKMILVVRNDLKMGKGKVAAQCSHAA 28 (117)
T ss_dssp EEEEEEEEGGGCCCHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCcCHhHHHHHHHHHH
Confidence 3566777754 578999999987654
No 32
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=25.25 E-value=33 Score=27.61 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=22.0
Q ss_pred eEEEEeCCCCcchhH-HHHHHHHHhCCCeEEEE
Q 028623 10 KRVVVDARHHMLGRL-ASVLAKELLNGQKVVVV 41 (206)
Q Consensus 10 ~w~vIDA~g~iLGRL-AS~VAk~Ll~Gd~VVVV 41 (206)
.||=|-+ .|++ |..++++|..|+.|.|.
T Consensus 68 dw~~Vv~----wgk~lAE~~~~yL~KGs~V~Ve 96 (164)
T 3k81_C 68 DHHTIRC----FGELFSAEVKQKVKEGNVVCVN 96 (164)
T ss_dssp EEEEEEE----CCHHHHHHHHHHCCTTCEEEEC
T ss_pred EEEEEEE----ECCHHHHHHHhhcCCCCEEEEE
Confidence 4655543 5678 99999999999998874
No 33
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=24.84 E-value=55 Score=23.89 Aligned_cols=34 Identities=32% Similarity=0.643 Sum_probs=25.6
Q ss_pred cccceEEEEeCCCCcchhHHHHHHHHHh-CCCeEEEEecc
Q 028623 6 GICAKRVVVDARHHMLGRLASVLAKELL-NGQKVVVVRCE 44 (206)
Q Consensus 6 ~~~~~w~vIDA~g~iLGRLAS~VAk~Ll-~Gd~VVVVNae 44 (206)
.+...++|+ | +|++++.+|+.|. .|..|+|+...
T Consensus 5 ~~~~~viIi-G----~G~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 5 DICNHALLV-G----YGRVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CCCSCEEEE-C----CSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred cCCCCEEEE-C----cCHHHHHHHHHHHHCCCCEEEEECC
Confidence 444555666 2 4999999999997 69999998753
No 34
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=24.47 E-value=18 Score=26.23 Aligned_cols=23 Identities=13% Similarity=0.304 Sum_probs=19.9
Q ss_pred cchhHHHHHHHHHhCCCeEEEEe
Q 028623 20 MLGRLASVLAKELLNGQKVVVVR 42 (206)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVVN 42 (206)
..|++|..+++.|..|+.|.|.-
T Consensus 54 ~~g~~Ae~~~~~l~KG~~V~V~G 76 (104)
T 1txy_A 54 VSGHENQAITHSITVGSRITVQG 76 (104)
T ss_dssp EESSTTHHHHTTCCTTCEEEEEE
T ss_pred EEhHHHHHHHhhCCCCCEEEEEE
Confidence 56899999999999999988753
No 35
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=23.22 E-value=1.5e+02 Score=22.21 Aligned_cols=37 Identities=35% Similarity=0.454 Sum_probs=26.7
Q ss_pred cceEEEEeCC-CCcchhHHHHHHHHHh-------------------CCCeEEEEecc
Q 028623 8 CAKRVVVDAR-HHMLGRLASVLAKELL-------------------NGQKVVVVRCE 44 (206)
Q Consensus 8 ~~~w~vIDA~-g~iLGRLAS~VAk~Ll-------------------~Gd~VVVVNae 44 (206)
.++.+||+.+ +.-.|.+|+++|..-+ +|+..||+.|+
T Consensus 7 ~k~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~Kvvlk~~ 63 (121)
T 1wn2_A 7 YKQVIVARADLKLSKGKLAAQVAHGAVTAAFEAYKKKREWFEAWFREGQKKVVVKVE 63 (121)
T ss_dssp EEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEES
T ss_pred ceEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCcEEEEecC
Confidence 4678888763 6789999999885432 57777776664
No 36
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=23.12 E-value=67 Score=19.28 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=19.5
Q ss_pred eehhhhhhhhCcchHHHHHHHHH
Q 028623 141 CLLGRLSSEVGWNYYDTIKELEK 163 (206)
Q Consensus 141 ~~LG~Ls~~vGWk~~~vv~~le~ 163 (206)
+++-+||.++|=.-+++++.|.+
T Consensus 3 ~rv~~lAkel~~~~k~l~~~l~~ 25 (49)
T 1nd9_A 3 VTIKTLAAERQTSVERLVQQFAD 25 (49)
T ss_dssp ECTTHHHHHHSSSHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHH
Confidence 45778999999999999988864
No 37
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=21.99 E-value=1.5e+02 Score=21.84 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=24.8
Q ss_pred ceEEEEeCC-CCcchhHHHHHHHHHh-------------------CCCeEEEEecc
Q 028623 9 AKRVVVDAR-HHMLGRLASVLAKELL-------------------NGQKVVVVRCE 44 (206)
Q Consensus 9 ~~w~vIDA~-g~iLGRLAS~VAk~Ll-------------------~Gd~VVVVNae 44 (206)
++.+||..+ +.-.|.+|+++|..-+ +|+..||+.|+
T Consensus 2 k~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~kivlk~~ 57 (115)
T 2zv3_A 2 KMVVVIRNDLGMGKGKMVAQGGHAIIEAFLDAKRKNPRAVDEWLREGQKKVVVKVN 57 (115)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEES
T ss_pred EEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCeEEEEecC
Confidence 356677653 6779999998875432 67777777665
No 38
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=20.70 E-value=66 Score=23.65 Aligned_cols=30 Identities=27% Similarity=0.196 Sum_probs=23.2
Q ss_pred ceEEEEeCCCCcchhHHHHHHHHHh-CCCeEEEEec
Q 028623 9 AKRVVVDARHHMLGRLASVLAKELL-NGQKVVVVRC 43 (206)
Q Consensus 9 ~~w~vIDA~g~iLGRLAS~VAk~Ll-~Gd~VVVVNa 43 (206)
..++|+ | .|++++.+|..|. .|..|+||.-
T Consensus 4 ~~vlI~---G--~G~vG~~la~~L~~~g~~V~vid~ 34 (153)
T 1id1_A 4 DHFIVC---G--HSILAINTILQLNQRGQNVTVISN 34 (153)
T ss_dssp SCEEEE---C--CSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CcEEEE---C--CCHHHHHHHHHHHHCCCCEEEEEC
Confidence 456666 4 3999999999987 6988888864
No 39
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=20.38 E-value=1.7e+02 Score=21.65 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=26.2
Q ss_pred cceEEEEeCC-CCcchhHHHHHHHHHh-------------------CCCeEEEEeccc
Q 028623 8 CAKRVVVDAR-HHMLGRLASVLAKELL-------------------NGQKVVVVRCEE 45 (206)
Q Consensus 8 ~~~w~vIDA~-g~iLGRLAS~VAk~Ll-------------------~Gd~VVVVNae~ 45 (206)
.++.+||..+ +.-.|.+|+++|..-+ +|+..||+.|++
T Consensus 3 ~k~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~kiVlk~~~ 60 (117)
T 1rlk_A 3 KKMVIAVRKDLDMGKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYDEGQRKIVVKVND 60 (117)
T ss_dssp EEEEEEEESTTCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEESS
T ss_pred cEEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCeEEEEecCC
Confidence 3466777753 5778999999885432 677777777643
No 40
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=20.31 E-value=74 Score=22.81 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=22.4
Q ss_pred ceEEEEeCCCCcchhHHHHHHHHHh-CCCeEEEEec
Q 028623 9 AKRVVVDARHHMLGRLASVLAKELL-NGQKVVVVRC 43 (206)
Q Consensus 9 ~~w~vIDA~g~iLGRLAS~VAk~Ll-~Gd~VVVVNa 43 (206)
...+|+ + .|++++.+|..|. .|..|+++.-
T Consensus 7 ~~v~I~-G----~G~iG~~la~~L~~~g~~V~~id~ 37 (141)
T 3llv_A 7 YEYIVI-G----SEAAGVGLVRELTAAGKKVLAVDK 37 (141)
T ss_dssp CSEEEE-C----CSHHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEE-C----CCHHHHHHHHHHHHCCCeEEEEEC
Confidence 345555 3 2888999999887 6999998864
Done!