RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 028623
(206 letters)
>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 142
Score = 137 bits (347), Expect = 2e-42
Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 9/144 (6%)
Query: 10 KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNT 69
V+VDAR ++GR+AS +A++ L+G+ V VV E I+G ++ + + KR++
Sbjct: 5 ADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITG----REEQIVEKYEKRVDI 60
Query: 70 KPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDAL 129
+G + + P I RTIRGM+PHK +RG A ++ Y G PYD+ ++ +L
Sbjct: 61 GNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLG--NPYDEDGEVLDGTSL 118
Query: 130 KVLRLQKGHKYCLLGRLSSEVGWN 153
L K+ LG +S +G N
Sbjct: 119 DRL---SNIKFVTLGEISETLGAN 139
>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 142
Score = 132 bits (332), Expect = 3e-40
Identities = 53/142 (37%), Positives = 79/142 (55%), Gaps = 2/142 (1%)
Query: 13 VVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPS 72
+++A +LGRLAS +AK LL G++VV+V E+ I+G KY + R T P
Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
Query: 73 HGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVL 132
GP + + +I+ RTIRGM+P KT RG A RLK Y G+P + + I +A V
Sbjct: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEA-HVS 121
Query: 133 RLQKGHKYCLLGRLSSEVGWNY 154
RL + KY +G ++ +G +
Sbjct: 122 RLSR-PKYVTVGEVAKFLGGKF 142
>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli
[TaxId: 562]}
Length = 140
Score = 82.7 bits (204), Expect = 5e-21
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQK------------VVVVRCEEICISGGLVRQKMKY 59
VVDA LGRLA+ LA+ L K ++V+ +++ ++G K+ Y
Sbjct: 16 YVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYY 75
Query: 60 MRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDK 119
+ + + R P +++ ++GM+P K G A +LK Y G +
Sbjct: 76 HHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLP-KGPLGRAMFRKLKVYAGNEHNHAA 134
Query: 120 TKRMVI 125
+ V+
Sbjct: 135 QQPQVL 140
>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 142
Score = 82.7 bits (204), Expect = 5e-21
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%)
Query: 12 VVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKY 59
VVVDA LGRLA+++A + G VVV+ ++ ++G + K+
Sbjct: 13 VVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYT 72
Query: 60 MRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDK 119
+ + + P +++ + GM+P K ++G A RLK Y G P+
Sbjct: 73 RYTGYQGGLKTETAREALSKHPERVIEHAVFGMLP-KGRQGRAMHTRLKVYAGETHPHSA 131
Query: 120 TKRMVIPDALKVLRL 134
K P LK L
Sbjct: 132 QK----PQVLKTQPL 142
>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus
thermophilus [TaxId: 274]}
Length = 139
Score = 81.2 bits (200), Expect = 2e-20
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 13/126 (10%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQK------------VVVVRCEEICISGGLVRQKMKY 59
V++DA LGRLA+ +A L + VVVV ++I ++G + QK+
Sbjct: 14 VLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYT 73
Query: 60 MRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDK 119
K + P ++L ++GM+P K G RLK Y G P+
Sbjct: 74 RYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLP-KGPLGRRLFKRLKVYAGPDHPHQA 132
Query: 120 TKRMVI 125
+ +
Sbjct: 133 QRPEKL 138
>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission
yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 108
Score = 29.2 bits (65), Expect = 0.13
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 100 GAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIK 159
G L ++ + P+ T+ + A K + G Y ++ + E W D++
Sbjct: 9 GMRVLTKMSGFPWWPS-MVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTGSDSLT 67
Query: 160 ELEKKRKERAQVAYERRKQLAKLRVKAEKAAEE 192
L + + E+ K +KA K A+
Sbjct: 68 PLTSEAISQ---FLEKPKPKTASLIKAYKMAQS 97
>d1xc3a2 c.55.1.10 (A:119-294) Putative fructokinase YhdR {Bacillus
subtilis [TaxId: 1423]}
Length = 176
Score = 26.7 bits (58), Expect = 1.6
Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 38 VVVVRCEEICISGGLVRQKMKY---MRFLRKRMNTKPSHGPIHFRAPAKILWRTIR---G 91
++++ ++I + GG+++QK + +++ K MN+ + I+ + G
Sbjct: 99 ILILAPKKIILGGGVMQQKQVFSYIYQYVPKIMNSYLDFSELSDDISDYIVPPRLGSNAG 158
Query: 92 MIPHKTKRGAAALAR 106
+I G LA
Sbjct: 159 II------GTLVLAH 167
>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK
{Escherichia coli [TaxId: 562]}
Length = 170
Score = 25.6 bits (55), Expect = 4.3
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 40 VVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKR 99
C+ + + G + + Y+ + + +P+ + A +R G++
Sbjct: 112 TTDCQCVVVGGSVGLAE-GYLALVETYLAQEPAAFHVDLLAAH---YRHDAGLL------ 161
Query: 100 GAAALAR 106
GAA LA+
Sbjct: 162 GAALLAQ 168
>d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum
vulgare), AMY1 isozyme [TaxId: 4513]}
Length = 347
Score = 25.7 bits (55), Expect = 4.4
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 149 EVGWNYYDTIKELEKKRKE 167
W + D I L RK
Sbjct: 327 FFNWGFKDQIAALVAIRKR 345
>d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus,
different strains [TaxId: 11320]}
Length = 388
Score = 25.5 bits (56), Expect = 5.6
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 67 MNTKPSHGPIHFRAPAKILWRTIRGMIPH 95
+ K S+G IH R+ + L P
Sbjct: 59 IRGKHSNGTIHDRSQYRALISWPLSSPPT 87
>d1zbra1 d.126.1.6 (A:3-341) Putative peptidyl-arginine deiminase
{Porphyromonas gingivalis [TaxId: 837]}
Length = 339
Score = 25.5 bits (55), Expect = 5.7
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 7 ICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGG 51
I V+V L +A + + L ++V+ + C + G
Sbjct: 280 IINGAVLVPTYDSHLDAVALSVMQGLFPDREVIGIDCRPLVKQHG 324
>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit
{Acidaminococcus fermentans [TaxId: 905]}
Length = 287
Score = 24.9 bits (53), Expect = 7.1
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 156 DTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERL 194
+ +K++E++ + + A E K A + + E A +R+
Sbjct: 28 EQLKKIEEEIHQLIKEAQEAGKADADVNKRGELTALQRI 66
>d1xkna_ d.126.1.6 (A:) Putative peptidyl-arginine deiminase
{Chlorobium tepidum [TaxId: 1097]}
Length = 353
Score = 25.1 bits (54), Expect = 7.1
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 30 KELLNGQKVVVVRCEEICISGG 51
++ ++VV + C ++ G
Sbjct: 313 QQCFPKREVVGIDCSDLIWGLG 334
>d1vpma_ d.38.1.1 (A:) Acyl-CoA hydrolase BH0798 {Bacillus
halodurans [TaxId: 86665]}
Length = 155
Score = 24.2 bits (52), Expect = 8.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 160 ELEKKRKERAQVAYERRKQLAKL 182
E EK+ E A E RK+ A L
Sbjct: 133 EEEKRLYETAPARKENRKKRAAL 155
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.402
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 793,978
Number of extensions: 37528
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 35
Length of query: 206
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,295,466
Effective search space: 161933250
Effective search space used: 161933250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.6 bits)