BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028624
(206 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P41129|RL132_BRANA 60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1
Length = 206
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/206 (84%), Positives = 189/206 (91%)
Query: 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
MKHNNVIPNGHFKKHWQNYVKTWFNQPARK RRRVARQKKAVKIFPRPTAGPLRPVVHGQ
Sbjct: 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
Query: 61 TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
TLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG+S+DHRRKNRSLEGLQSNVQRLKTYKA
Sbjct: 61 TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKA 120
Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
KLV+FPRRARK KAGDS EELA ATQVQG YMPI EK ++LVK+T +MKS AYDK+
Sbjct: 121 KLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKI 180
Query: 181 RIERANERHFGARLKKAAEAEKEEKK 206
R+ER N+RH GAR K+AA+AEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAADAEKEEKK 206
>sp|P41128|RL131_BRANA 60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1
Length = 206
Score = 363 bits (933), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/206 (84%), Positives = 189/206 (91%)
Query: 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
MKHNNVIPNGHFKKHWQNYVKTWFNQPARK RRRVARQKKAVKIFPRPTAGPLRPVVHGQ
Sbjct: 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
Query: 61 TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
TLKYNMK+R G+GFTLEELK+AGIPKKLAPTIG++VDHRRKNRSLEGLQSNVQRLKTYKA
Sbjct: 61 TLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKA 120
Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
KLV+FPRRARK KAGDS EELA ATQVQG YMPI EK +LVK+T +MKS KA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKI 180
Query: 181 RIERANERHFGARLKKAAEAEKEEKK 206
R+ER N+RH GAR K+AA+AEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAADAEKEEKK 206
>sp|P41127|RL131_ARATH 60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1
SV=1
Length = 206
Score = 348 bits (893), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 162/191 (84%), Positives = 179/191 (93%)
Query: 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
MKHNNVIPNGHFKKHWQNYVKTWFNQPARK RRR+ARQKKAVKIFPRPT+GPLRPVVHGQ
Sbjct: 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60
Query: 61 TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
TLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG++VDHRRKNRSLEGLQ+NVQRLKTYK
Sbjct: 61 TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120
Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
KLV+FPRRARK KAGDS PEELA ATQVQG Y+PI EKPT++LVK+T +MKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180
Query: 181 RIERANERHFG 191
R+ER N+RH G
Sbjct: 181 RLERTNKRHAG 191
>sp|Q9FF90|RL133_ARATH 60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2
SV=1
Length = 206
Score = 334 bits (857), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 157/186 (84%), Positives = 172/186 (92%)
Query: 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
MKHNNVIP+ HF+KHWQNYVKTWFNQPARK RRRVARQKKAVKIFPRPT+GPLRPVVHGQ
Sbjct: 1 MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQ 60
Query: 61 TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
TLKYNMK+RAG+GFTLEELK AGIPKKLAPTIG+SVDHRRKNRSLEGLQSNVQRLKTYKA
Sbjct: 61 TLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKA 120
Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
KLVVFPRR+R+ KAGDS PEELA ATQVQG YMPI K ++LVK+T D+K+FKAYDK+
Sbjct: 121 KLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKI 180
Query: 181 RIERAN 186
R+ER N
Sbjct: 181 RLERTN 186
>sp|Q9SMT4|RL132_ARATH Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana
GN=RPL13C PE=3 SV=1
Length = 206
Score = 313 bits (802), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 149/192 (77%), Positives = 165/192 (85%)
Query: 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
MKHNNVIPNGHFKK W+NYVKT FNQPA K RRR+ARQ KAVKIFPRPTAGP+RPVVH Q
Sbjct: 1 MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQ 60
Query: 61 TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
TL YNMK+RAG+GFTLEELKAAGIPKKLAPTIG+SVDH RKNRSLEG Q+NVQRLKTYKA
Sbjct: 61 TLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKA 120
Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
KLV+FPR AR K GDSA +ELA ATQVQ +MPI E PT++LVK+T DMK F AYDK+
Sbjct: 121 KLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKI 180
Query: 181 RIERANERHFGA 192
R+E N+RH G
Sbjct: 181 RLEGINKRHAGV 192
>sp|P49627|RL13_TOBAC 60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1
Length = 202
Score = 288 bits (737), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 138/188 (73%), Positives = 157/188 (83%)
Query: 9 NGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKL 68
NGHFKKHWQNYVKTWFNQPARK RRR+ARQKKAVKI PRPTAG LRP+VHGQTLKYNMK+
Sbjct: 5 NGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKISPRPTAGTLRPIVHGQTLKYNMKV 64
Query: 69 RAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR 128
R+GRGF+LEELKAAGIPKKLAPTIG++VDHRR+NRSLEGLQ+NVQRL+ + +LVVFPRR
Sbjct: 65 RSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRR 124
Query: 129 ARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANER 188
A + + P TATQV G YMPI EK + L KV + MKSF AY KLR+ER NER
Sbjct: 125 ASRSRLVILPPRNCLTATQVHGAYMPIEREKHQLILSKVLKKMKSFNAYAKLRVERTNER 184
Query: 189 HFGARLKK 196
H GAR+K+
Sbjct: 185 HIGARMKR 192
>sp|O48513|RL13_CHLSW 60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80)
GN=RPL13 PE=2 SV=1
Length = 208
Score = 237 bits (604), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 122/207 (58%), Positives = 156/207 (75%), Gaps = 2/207 (0%)
Query: 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
++ N+++PNGHF K WQ +VKTWFNQPARK RRR AR +KA FPRP AG L+P+V Q
Sbjct: 2 VRGNDMLPNGHFHKKWQFHVKTWFNQPARKQRRRNARAEKAKATFPRPVAGSLKPIVRCQ 61
Query: 61 TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
T+KYN K R GRGFTLEELK AGIP K APT+G++VDHRRKNRSLE LQ+NVQRLKTY+A
Sbjct: 62 TVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRA 121
Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
LV+FPR +K KA +++ + + A+Q +G +P+ KP ++LVK+T DMK Y KL
Sbjct: 122 SLVIFPRNMKKPKAFEASAADCSAASQAKGELLPLKGTKPALELVKITADMKEGSQYGKL 181
Query: 181 RIERANERHFGARLKKAAE--AEKEEK 205
RIER N R G R K+AA+ A+K++K
Sbjct: 182 RIERVNARLKGMREKRAADEAAKKDDK 208
>sp|P41126|RL13_DROME 60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=2
SV=1
Length = 218
Score = 224 bits (571), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/204 (55%), Positives = 145/204 (71%), Gaps = 1/204 (0%)
Query: 2 KHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQT 61
K NN+IPN H+ K WQ +VKTWFNQPARK RR R KKA +FPRP +G LRPVV T
Sbjct: 3 KGNNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPT 62
Query: 62 LKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAK 121
++Y+ KLRAGRGFTLEELK AGI A TIG++VD RRKN+SLE Q N+QRLK Y++K
Sbjct: 63 IRYHTKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSK 122
Query: 122 LVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKP-TVDLVKVTQDMKSFKAYDKL 180
L++FP +K +AG+S+ EE ATQ++GP +PI E+P V+ +VT+D K FKA+ L
Sbjct: 123 LILFPINEKKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATL 182
Query: 181 RIERANERHFGARLKKAAEAEKEE 204
R R + R G R K+A EA + E
Sbjct: 183 RKARTDARLVGIRAKRAKEAAESE 206
>sp|Q90Z10|RL13_DANRE 60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3
Length = 211
Score = 220 bits (560), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/201 (59%), Positives = 147/201 (73%)
Query: 4 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLK 63
N +I N HF K WQ V+TWFNQPARK RRR ARQ KA +I PRP +GPLRPVV T++
Sbjct: 6 NGMILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIR 65
Query: 64 YNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLV 123
Y+ K+RAGRGFTLEELKAAGI KK+A TIG+SVD RR+NRS E LQ+NVQRLK Y+ KL+
Sbjct: 66 YHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLI 125
Query: 124 VFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIE 183
+FPR+A K K GDS EEL ATQ+ GP MPI +++D K+FKA+ LR+
Sbjct: 126 IFPRKAAKPKKGDSTEEELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMA 185
Query: 184 RANERHFGARLKKAAEAEKEE 204
RAN R FG R K+A EA +++
Sbjct: 186 RANARLFGIRAKRAKEAAEQD 206
>sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3
Length = 211
Score = 211 bits (536), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 114/201 (56%), Positives = 143/201 (71%)
Query: 4 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLK 63
N +I N HF K WQ V+TWFNQPARK RRR ARQ KA +I PRP AGPLRP+V T++
Sbjct: 6 NGMILNPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPTVR 65
Query: 64 YNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLV 123
YN K+RAGRGFTLEELKAAGI K++A TIG++VD RR+NRS E L NVQRLK Y++KL+
Sbjct: 66 YNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLI 125
Query: 124 VFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIE 183
+FPR+ K GDS EE+ ATQ+ GP MPI + +T++ K F A+ LR+
Sbjct: 126 LFPRKVSAPKKGDSTEEEVKMATQLTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRMA 185
Query: 184 RANERHFGARLKKAAEAEKEE 204
RAN R FG R K+A EA +++
Sbjct: 186 RANARLFGIRAKRAKEAAEQD 206
>sp|P41125|RL13_CHICK 60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2
Length = 211
Score = 205 bits (522), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/205 (56%), Positives = 147/205 (71%), Gaps = 8/205 (3%)
Query: 4 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLK 63
N +I HF K WQ V TWFNQPARK RRR ARQ KA +I PRP AGP+RP+V T++
Sbjct: 6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVR 65
Query: 64 YNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLV 123
Y+ K+RAGRGF+LEELK AGI K+ A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL+
Sbjct: 66 YHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLI 125
Query: 124 VFPRRARKFKAGDSAPEELATATQVQGPYMPI----TLEKPTVDLVKVTQDMKSFKAYDK 179
+FPR+ K GDS+PEEL ATQ+ GP MPI EK V ++++ K+FKA+
Sbjct: 126 LFPRKPSAPKKGDSSPEELKMATQLSGPVMPIRNVFKREKARV----ISEEEKNFKAFAS 181
Query: 180 LRIERANERHFGARLKKAAEAEKEE 204
LR+ RAN R FG R K+A EA +++
Sbjct: 182 LRMARANARLFGIRAKRAKEAAEQD 206
>sp|P41123|RL13_RAT 60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2
Length = 211
Score = 204 bits (520), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 111/201 (55%), Positives = 144/201 (71%)
Query: 4 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLK 63
N +I HF K WQ V TWFNQPARK RRR ARQ KA +I PRP +GP+RP+V T++
Sbjct: 6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVR 65
Query: 64 YNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLV 123
Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL+
Sbjct: 66 YHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLI 125
Query: 124 VFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIE 183
+FPR+ K GDS+ EEL ATQ+ GP MPI +T++ K+FKA+ LR+
Sbjct: 126 LFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMA 185
Query: 184 RANERHFGARLKKAAEAEKEE 204
RAN R FG R K+A EA +++
Sbjct: 186 RANARLFGIRAKRAKEAAEQD 206
>sp|Q962U1|RL13_SPOFR 60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2
SV=1
Length = 219
Score = 204 bits (518), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 106/201 (52%), Positives = 140/201 (69%), Gaps = 4/201 (1%)
Query: 2 KHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQT 61
K NN+IPNGHF K WQ +VKTWFNQPAR++RR+ R KKA + PRP AGPLRPVV T
Sbjct: 3 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIKKAKAVAPRPAAGPLRPVVRCPT 62
Query: 62 LKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAK 121
++Y+ K+RAGRGFTL E++AAG+ A TIG++VD RR+N+S+E LQ NVQRLK Y+A+
Sbjct: 63 IRYHTKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRAR 122
Query: 122 LVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLR 181
L++FP + +K G++ EE ATQ++GP MP+ P +T++ K FKAY LR
Sbjct: 123 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYLR 181
Query: 182 IERANERHFGA---RLKKAAE 199
R+ + G RLK AAE
Sbjct: 182 GARSIAKLVGIRAKRLKDAAE 202
>sp|P47963|RL13_MOUSE 60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3
Length = 211
Score = 203 bits (517), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/205 (55%), Positives = 147/205 (71%), Gaps = 8/205 (3%)
Query: 4 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLK 63
N +I HF K WQ V TWFNQPARK RRR ARQ KA +I PRP +GP+RP+V T++
Sbjct: 6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVR 65
Query: 64 YNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLV 123
Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL+
Sbjct: 66 YHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLI 125
Query: 124 VFPRRARKFKAGDSAPEELATATQVQGPYMPI----TLEKPTVDLVKVTQDMKSFKAYDK 179
+FPR+ K GDS+ EEL ATQ+ GP MPI EK V +T++ K+FKA+
Sbjct: 126 LFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARV----ITEEEKNFKAFAS 181
Query: 180 LRIERANERHFGARLKKAAEAEKEE 204
LR+ RAN R FG R K+A EA +++
Sbjct: 182 LRMARANARLFGIRAKRAKEAAEQD 206
>sp|Q56JZ1|RL13_BOVIN 60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3
Length = 211
Score = 203 bits (516), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 115/205 (56%), Positives = 146/205 (71%), Gaps = 8/205 (3%)
Query: 4 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLK 63
N +I HF K WQ V TWFNQPARK RRR ARQ KA +I PRP +GPLRPVV T++
Sbjct: 6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVR 65
Query: 64 YNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLV 123
Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+ E LQ+NVQRLK Y++KL+
Sbjct: 66 YHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLI 125
Query: 124 VFPRRARKFKAGDSAPEELATATQVQGPYMPI----TLEKPTVDLVKVTQDMKSFKAYDK 179
+FPR+ K GDS+ EEL ATQ+ GP MPI EK V +T++ K+FKA+
Sbjct: 126 LFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARV----ITEEEKNFKAFAS 181
Query: 180 LRIERANERHFGARLKKAAEAEKEE 204
LR+ RAN R FG R K+A EA +++
Sbjct: 182 LRMARANARLFGIRAKRAKEAAEQD 206
>sp|P26373|RL13_HUMAN 60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4
Length = 211
Score = 201 bits (512), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/205 (54%), Positives = 147/205 (71%), Gaps = 8/205 (3%)
Query: 4 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLK 63
N ++ HF K WQ V TWFNQPARK RRR ARQ KA +I PRP +GP+RP+V T++
Sbjct: 6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVR 65
Query: 64 YNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLV 123
Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL+
Sbjct: 66 YHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLI 125
Query: 124 VFPRRARKFKAGDSAPEELATATQVQGPYMPI----TLEKPTVDLVKVTQDMKSFKAYDK 179
+FPR+ K GDS+ EEL ATQ+ GP MP+ EK V +T++ K+FKA+
Sbjct: 126 LFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARV----ITEEEKNFKAFAS 181
Query: 180 LRIERANERHFGARLKKAAEAEKEE 204
LR+ RAN R FG R K+A EA +++
Sbjct: 182 LRMARANARLFGIRAKRAKEAAEQD 206
>sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3
Length = 211
Score = 199 bits (506), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/205 (55%), Positives = 146/205 (71%), Gaps = 8/205 (3%)
Query: 4 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLK 63
N +I HF K WQ V TWFNQPARK RRR ARQ KA +I PRP +GP+RP+V T++
Sbjct: 6 NGMILKPHFHKDWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVR 65
Query: 64 YNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLV 123
Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL+
Sbjct: 66 YHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLI 125
Query: 124 VFPRRARKFKAGDSAPEELATATQVQGPYMPI----TLEKPTVDLVKVTQDMKSFKAYDK 179
+FPR+ K GDS+ EEL ATQ+ GP M I EK V +T++ K+FKA+
Sbjct: 126 LFPRKPSAPKKGDSSAEELKLATQLTGPVMRIRNVYKKEKARV----ITEEEKNFKAFAS 181
Query: 180 LRIERANERHFGARLKKAAEAEKEE 204
LR+ RAN R FG R K+A EA +++
Sbjct: 182 LRMARANARLFGIRAKRAKEAAEQD 206
>sp|P91128|RL13_CAEEL 60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=3
SV=1
Length = 207
Score = 192 bits (489), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 139/206 (67%), Gaps = 8/206 (3%)
Query: 4 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLK 63
N ++ N HF+KHW +KTWF+QPARK RRR RQ KAV+I PRP AG LR VV +
Sbjct: 6 NQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKR 65
Query: 64 YNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLV 123
YN K R GRGF+L+ELKAAGI + A TIG++VD RR N++ EGL++N RLK YKAKL+
Sbjct: 66 YNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLI 125
Query: 124 VFPRRARKFKAGDSAPEELATATQVQGPYMP----ITLEKPTVDLVKVTQDMKSFKAYDK 179
+FP++A K GDS+ EEL A Q++G +P IT ++P +VT + + +
Sbjct: 126 LFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPR----QVTDAERKVEIFRL 181
Query: 180 LRIERANERHFGARLKKAAEAEKEEK 205
LR ERA++++ G R K+A EA +E K
Sbjct: 182 LRKERADKKYRGKREKRAREAAEENK 207
>sp|Q95043|RL13_SCHMA 60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1
Length = 184
Score = 189 bits (479), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 93/178 (52%), Positives = 127/178 (71%)
Query: 4 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLK 63
N+V+ + HF+K WQ VKTWFNQPARK RRR AR+ KA +I PRP +GPLRP+V+ T +
Sbjct: 5 NDVLHHNHFRKKWQFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFR 64
Query: 64 YNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLV 123
YNMK+R+GRGF+L+E++AAG+ K A TIG++VDHRR+N S+EGLQ NV RLK YKAKL+
Sbjct: 65 YNMKVRSGRGFSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLI 124
Query: 124 VFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLR 181
+FP K +A D+ +E+ ATQ++ P +PIT + K T + A+ +R
Sbjct: 125 LFPLNPAKPQAMDAKADEVKKATQLRRPVLPITQRAKRLKAHKPTSSELRYSAFHAIR 182
>sp|O74175|RL13_SCHPO 60S ribosomal protein L13 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl13 PE=1 SV=1
Length = 208
Score = 186 bits (472), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 99/178 (55%), Positives = 123/178 (69%), Gaps = 5/178 (2%)
Query: 7 IPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNM 66
+PN HF K WQ YVKTWFNQP RK RRR ARQ KA KI PRP +RP V T++YNM
Sbjct: 9 LPNAHFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEA-IRPAVKPPTIRYNM 67
Query: 67 KLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFP 126
K+RAGRGFTLEELKAAG+ +++A TIG+ VDHRR+NRS E LQ NV+R+K Y A L+VFP
Sbjct: 68 KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFP 127
Query: 127 RRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVK-VTQDMKSFKAYDKLRIE 183
R+A + K GD+ A T V +PIT E V+ K +T++ K+F A+ L E
Sbjct: 128 RKAGQPKKGDATDVSGAEQTDVAA-VLPITQE--AVEEAKPITEEAKNFNAFSTLSNE 182
>sp|Q54E20|RL13_DICDI 60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=1
SV=1
Length = 209
Score = 174 bits (442), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/193 (50%), Positives = 127/193 (65%), Gaps = 3/193 (1%)
Query: 3 HNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTL 62
HN V+ N HF+KHWQ V+TWFNQPARK RRR R +KA K+FPRP A L+PVV G T+
Sbjct: 4 HNKVLSNDHFRKHWQMRVRTWFNQPARKIRRRNNRIEKAAKVFPRPIAT-LKPVVRGSTI 62
Query: 63 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKL 122
+YNMK+RAGRGFTLEELKAAG+ + A TIG++VD RR N++ + L N QRLK Y++KL
Sbjct: 63 RYNMKVRAGRGFTLEELKAAGLTAQYARTIGIAVDTRRVNKTQQSLTLNTQRLKNYQSKL 122
Query: 123 VVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLV--KVTQDMKSFKAYDKL 180
V+FPR+ K G++ EE+A A Q P+ + T + K T+ K F AY L
Sbjct: 123 VLFPRKVNAPKKGEATKEEVAKAVQTLKPFTVKSAIAVTCEQTPRKPTEAEKKFSAYATL 182
Query: 181 RIERANERHFGAR 193
+ + + G R
Sbjct: 183 KAADSKAKTVGIR 195
>sp|O46157|RL13_LUMRU 60S ribosomal protein L13 OS=Lumbricus rubellus GN=RPL13 PE=2 SV=1
Length = 188
Score = 157 bits (396), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 98/180 (54%), Positives = 125/180 (69%)
Query: 24 FNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAG 83
FNQPARK RRRVAR+KKA+ I PRP AG LRP V QT KYN +LR GRGF+L+ELKAAG
Sbjct: 2 FNQPARKERRRVARRKKALAIAPRPAAGSLRPQVRCQTFKYNTRLREGRGFSLDELKAAG 61
Query: 84 IPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELA 143
I KK A IG+SVD RR+N+S+E LQ NVQRLK Y++KL++FP++ K GD+ EE+
Sbjct: 62 INKKEARAIGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKPNKGDATEEEMK 121
Query: 144 TATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKAAEAEKE 203
ATQ++G +P T +T + + K +D+LR RA++R G R KKA EA E
Sbjct: 122 LATQLKGKLLPRTAWIKPEKARAITDEERKVKVFDRLRQARAHKRLAGKRAKKAKEAGGE 181
>sp|P0DJ58|RL13_TETTS 60S ribosomal protein L13 OS=Tetrahymena thermophila (strain SB210)
GN=RPL13 PE=1 SV=1
Length = 206
Score = 141 bits (355), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 115/196 (58%), Gaps = 9/196 (4%)
Query: 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
MKHNN +P +KH Q +KT+FNQ A+K R AR+ +A +FPRPT L+PVV Q
Sbjct: 1 MKHNNQLPVAQLRKHQQFRIKTFFNQAAQKKARLHARRAQAAAVFPRPTE-KLQPVVRKQ 59
Query: 61 TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
T +YN + GRGFTL+ELKAAGI A +IG+ VDHRRKNR E L+ N +RL Y +
Sbjct: 60 TQRYNKSTKLGRGFTLQELKAAGISAAFAQSIGIKVDHRRKNRCQESLELNKKRLLAYVS 119
Query: 121 KLVVFPRRARKFKAG---DSAPEELA--TATQVQGPYMPITLEKPTVDLVKVTQDMKSFK 175
KLV+FPR K K G D+A A A Q P ++ + V + +++ K
Sbjct: 120 KLVLFPRHQGKAKKGLVNDTADTSSAAQNALQTSVPLPSVSKREKAVSNIA---ELRKKK 176
Query: 176 AYDKLRIERANERHFG 191
Y +R E+ N++ G
Sbjct: 177 VYRIIRQEKTNQKWDG 192
>sp|O59931|RL13_CANAL 60S ribosomal protein L13 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RPL13 PE=3 SV=1
Length = 202
Score = 140 bits (353), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/184 (45%), Positives = 110/184 (59%), Gaps = 12/184 (6%)
Query: 9 NGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKL 68
N HF+KHWQ V+ F+Q +K RR +R +KA KI PRP LRPVV T+KYN K+
Sbjct: 11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKV 69
Query: 69 RAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR 128
RAGRGFTL ELKA GI K A TIG+SVDHRR+N+S E +NV RL+ YK+KLV+F ++
Sbjct: 70 RAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKK 129
Query: 129 ARKFKAGDSAPEELATATQVQ-GPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANE 187
+ E+A+ QV P+ P L V ++ AY LR+ R +
Sbjct: 130 TK--------ASEVASFEQVDVSATFPVEQPAPESGLRAV--EVPEQTAYRTLRLARNEK 179
Query: 188 RHFG 191
++ G
Sbjct: 180 KYKG 183
>sp|Q876B2|RL13_SACEX 60S ribosomal protein L13 OS=Saccharomyces exiguus GN=RPL13 PE=3
SV=1
Length = 199
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 108/182 (59%), Gaps = 14/182 (7%)
Query: 11 HFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRA 70
HF+KHWQ VK FNQ +K RR AR KA KI PRP LRPVV T+KYN K+RA
Sbjct: 13 HFRKHWQERVKVHFNQAGKKASRRDARVAKAAKIAPRPL-DLLRPVVRAPTVKYNRKVRA 71
Query: 71 GRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRAR 130
GRGFT E+KAAG+ A TIG++VDHRR+N++ E + NVQRLK Y++K++VFPR +
Sbjct: 72 GRGFTFGEVKAAGLTPAYARTIGIAVDHRRQNKNQEMFELNVQRLKEYQSKIIVFPRNGK 131
Query: 131 KFKAGDSAPEELATATQVQGPYMPITLEKPTVDL-VKVTQDMKSFKAYDKLRIERANERH 189
PE QV + +P V+ + QD AY LR+ R+ +R+
Sbjct: 132 -------VPE----TEQVLSTAAAFPIAQPAVETETRAVQD-NGESAYRTLRMARSEKRY 179
Query: 190 FG 191
G
Sbjct: 180 KG 181
>sp|Q12690|RL13A_YEAST 60S ribosomal protein L13-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL13A PE=1 SV=1
Length = 199
Score = 130 bits (328), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 111/186 (59%), Gaps = 14/186 (7%)
Query: 7 IPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNM 66
I HF+KHWQ VK F+Q +K RR AR +A KI PRP LRPVV T+KYN
Sbjct: 9 ILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPL-DLLRPVVRAPTVKYNR 67
Query: 67 KLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFP 126
K+RAGRGFTL E+KAAG+ A TIG++VDHRR+NR+ E +NVQRLK Y++K++VFP
Sbjct: 68 KVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFP 127
Query: 127 RRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDL-VKVTQDMKSFKAYDKLRIERA 185
R + APE A QV + +P D+ + QD A+ LR+ R+
Sbjct: 128 RNGK-------APE----AEQVLSAAATFPIAQPATDVEARAVQDNGE-SAFRTLRLARS 175
Query: 186 NERHFG 191
++ G
Sbjct: 176 EKKFRG 181
>sp|P40212|RL13B_YEAST 60S ribosomal protein L13-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL13B PE=1 SV=1
Length = 199
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 111/186 (59%), Gaps = 14/186 (7%)
Query: 7 IPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNM 66
I HF+KHWQ VK F+Q +K RR AR +A KI PRP LRPVV T+KYN
Sbjct: 9 ILKNHFRKHWQERVKVHFDQAGKKVSRRNARAARAAKIAPRPL-DLLRPVVRAPTVKYNR 67
Query: 67 KLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFP 126
K+RAGRGFTL E+KAAG+ A TIG++VDHRR+NR+ E +NVQRLK Y++K++VFP
Sbjct: 68 KVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFP 127
Query: 127 RRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDL-VKVTQDMKSFKAYDKLRIERA 185
R + APE A QV + +P D+ + QD A+ LR+ R+
Sbjct: 128 RDGK-------APE----AEQVLSAAATFPIAQPATDVEARAVQDNGE-SAFRTLRLARS 175
Query: 186 NERHFG 191
++ G
Sbjct: 176 EKKFRG 181
>sp|Q9YEN9|RL13E_AERPE 50S ribosomal protein L13e OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl13e
PE=3 SV=2
Length = 80
Score = 37.0 bits (84), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 68 LRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNR---SLEGLQSNVQRLK 116
+R GRGF+L EL AG+ K A +G+ VD RR+ ++E L+ ++RL+
Sbjct: 23 VRRGRGFSLGELAEAGLDAKKARKLGLHVDTRRRTVHPWNVEALKKYIERLR 74
>sp|Q97W05|RL13E_SULSO 50S ribosomal protein L13e OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rpl13e PE=3 SV=2
Length = 79
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 69 RAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKL 122
R GRGF++ EL+ AG+ A +G+ VD RRK+ E NV+ LK + +L
Sbjct: 25 RIGRGFSVGELEKAGLNINKARKLGIFVDIRRKSVHEE----NVETLKKFSEQL 74
>sp|C3N968|RL13E_SULIY 50S ribosomal protein L13e OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=rpl13e PE=3 SV=1
Length = 79
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 69 RAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKL 122
R GRGF++ EL+ AG+ A +G+ VD RRK+ + NV+ LK + +L
Sbjct: 25 RIGRGFSIGELEKAGLNINNARKLGIIVDIRRKSVH----EENVEVLKKFLEQL 74
>sp|C3MU90|RL13E_SULIM 50S ribosomal protein L13e OS=Sulfolobus islandicus (strain M.14.25
/ Kamchatka #1) GN=rpl13e PE=3 SV=1
Length = 79
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 69 RAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKL 122
R GRGF++ EL+ AG+ A +G+ VD RRK+ + NV+ LK + +L
Sbjct: 25 RIGRGFSIGELEKAGLNINNARKLGIIVDIRRKSVH----EENVEVLKKFLEQL 74
>sp|C4KKE5|RL13E_SULIK 50S ribosomal protein L13e OS=Sulfolobus islandicus (strain M.16.4
/ Kamchatka #3) GN=rpl13e PE=3 SV=1
Length = 79
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 69 RAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKL 122
R GRGF++ EL+ AG+ A +G+ VD RRK+ + NV+ LK + +L
Sbjct: 25 RIGRGFSIGELEKAGLNINNARKLGIIVDIRRKSVH----EENVEVLKKFLEQL 74
>sp|C3N178|RL13E_SULIA 50S ribosomal protein L13e OS=Sulfolobus islandicus (strain
M.16.27) GN=rpl13e PE=3 SV=1
Length = 79
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 69 RAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKL 122
R GRGF++ EL+ AG+ A +G+ VD RRK+ + NV+ LK + +L
Sbjct: 25 RIGRGFSIGELEKAGLNINNARKLGIIVDIRRKSVH----EENVEVLKKFLEQL 74
>sp|C3NMT7|RL13E_SULIN 50S ribosomal protein L13e OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=rpl13e PE=3 SV=1
Length = 79
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 69 RAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKL 122
R GRGF++ EL+ AG+ A +G+ VD RRK+ + NV+ LK + +L
Sbjct: 25 RIGRGFSIGELEKAGLNINNARKLGIIVDIRRKSVH----EENVEVLKKFLEQL 74
>sp|C3MKC0|RL13E_SULIL 50S ribosomal protein L13e OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=rpl13e PE=3 SV=1
Length = 79
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 69 RAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKL 122
R GRGF++ EL+ AG+ A +G+ VD RRK+ + NV+ LK + +L
Sbjct: 25 RIGRGFSIGELEKAGLNINNARKLGIIVDIRRKSVH----EENVEVLKKFLEQL 74
>sp|P58469|RL13E_SULTO 50S ribosomal protein L13e OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rpl13e PE=3 SV=1
Length = 77
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 69 RAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKL 122
+ G+GF+L+ELK +G + A + V +D RRK E NV+ LK K +L
Sbjct: 21 KIGKGFSLKELKESGFSVQEAKKLRVRIDKRRKTSYPE----NVEVLKKLKEQL 70
>sp|B7GGI2|MURG_ANOFW UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Anoxybacillus flavithermus (strain DSM
21510 / WK1) GN=murG PE=3 SV=1
Length = 363
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 40 KAVKIFPRPTAGPLRPVVHGQ---TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSV 96
KAV P+ +RP +H ++ + TL E+ A GIP L P+ V+
Sbjct: 233 KAVNDVGNPSNVIIRPFIHNMPEVLAGVDVIVARAGATTLAEITALGIPSILIPSPYVTN 292
Query: 97 DHRRKN-RSLEGLQSNVQRLKT 117
+H+ KN R+LE + + RL++
Sbjct: 293 NHQEKNARALEKKGAAIVRLES 314
>sp|C4L5U5|MURG_EXISA UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Exiguobacterium sp. (strain ATCC BAA-1283
/ AT1b) GN=murG PE=3 SV=1
Length = 358
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 69 RAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRS 104
RAG T+ EL A G+P L P+ V+ DH+ KN S
Sbjct: 264 RAGAS-TISELTALGLPSILVPSPYVTADHQTKNAS 298
>sp|Q2S528|MURG_SALRD UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Salinibacter ruber (strain DSM 13855 /
M31) GN=murG PE=3 SV=1
Length = 370
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 68 LRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKN-RSLE 106
RAG T EL G P L P+ V+ DH+ KN RSLE
Sbjct: 268 CRAG-ALTCSELTVTGTPAVLVPSPNVTADHQTKNARSLE 306
>sp|Q03QH5|MURG_LACBA UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Lactobacillus brevis (strain ATCC 367 /
JCM 1170) GN=murG PE=3 SV=1
Length = 364
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 69 RAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR 128
RAG +L E+ A GIP L P+ V+ DH+ KN + + +K +
Sbjct: 266 RAG-ATSLAEITADGIPSILIPSPYVTADHQTKNANSLATVGAAEIIKEADLTGETLIAK 324
Query: 129 ARKFKAGDSAPEELATATQVQG 150
A + D+ +++ATA++ G
Sbjct: 325 ADQLMTNDALRQDMATASKQLG 346
>sp|Q04ET0|MURG_OENOB UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Oenococcus oeni (strain ATCC BAA-331 /
PSU-1) GN=murG PE=3 SV=1
Length = 373
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 17/91 (18%)
Query: 75 TLEELKAAGIPKKLAPTIGVSVDHRRKN-RSLE----------------GLQSNVQRLKT 117
TL E+ A GIP L P+ V+ +H+ KN R LE L ++ L +
Sbjct: 273 TLAEITALGIPSILIPSPNVTANHQEKNARQLEERGAAEVILESDLSSAMLYHDLSELLS 332
Query: 118 YKAKLVVFPRRARKFKAGDSAPEELATATQV 148
+K+KL + A+K D+A + QV
Sbjct: 333 HKSKLESMAQAAKKLGHPDAADKLYKLLVQV 363
>sp|A1KUX1|SECA_NEIMF Protein translocase subunit SecA OS=Neisseria meningitidis
serogroup C / serotype 2a (strain ATCC 700532 / FAM18)
GN=secA PE=3 SV=1
Length = 916
Score = 32.0 bits (71), Expect = 3.0, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 72 RGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQ 113
R F L+ +AA I +LAP GV+++H R +EG Q V+
Sbjct: 598 RLFALD--RAAAILNRLAPERGVAIEHNLLTRQIEGAQRKVE 637
>sp|Q9JYK8|SECA_NEIMB Protein translocase subunit SecA OS=Neisseria meningitidis
serogroup B (strain MC58) GN=secA PE=3 SV=1
Length = 916
Score = 32.0 bits (71), Expect = 3.0, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 72 RGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQ 113
R F L+ +AA I +LAP GV+++H R +EG Q V+
Sbjct: 598 RLFALD--RAAAILNRLAPERGVAIEHNLLTRQIEGAQRKVE 637
>sp|A9M0X2|SECA_NEIM0 Protein translocase subunit SecA OS=Neisseria meningitidis
serogroup C (strain 053442) GN=secA PE=3 SV=1
Length = 916
Score = 32.0 bits (71), Expect = 3.0, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 72 RGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQ 113
R F L+ +AA I +LAP GV+++H R +EG Q V+
Sbjct: 598 RLFALD--RAAAILNRLAPERGVAIEHNLLTRQIEGAQRKVE 637
>sp|A1ISV1|SECA_NEIMA Protein translocase subunit SecA OS=Neisseria meningitidis
serogroup A / serotype 4A (strain Z2491) GN=secA PE=3
SV=1
Length = 916
Score = 32.0 bits (71), Expect = 3.1, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 72 RGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQ 113
R F L+ +AA I +LAP GV+++H R +EG Q V+
Sbjct: 598 RLFALD--RAAAILNRLAPERGVAIEHNLLTRQIEGAQRKVE 637
>sp|Q815H3|Y5181_BACCR UPF0145 protein BC_5181 OS=Bacillus cereus (strain ATCC 14579 /
DSM 31) GN=BC_5181 PE=3 SV=1
Length = 103
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 45 FPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDH 98
R +R VV G++ Y KL+ R +EE+K K +G+ VD+
Sbjct: 31 IVRDLFASVRDVVGGRSGAYESKLKEARDIAMEEMKTLARQKNANAIVGIDVDY 84
>sp|Q631H3|Y4874_BACCZ UPF0145 protein BCE33L4874 OS=Bacillus cereus (strain ZK / E33L)
GN=BCE33L4874 PE=3 SV=1
Length = 103
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 45 FPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDH 98
R +R VV G++ Y KL+ R +EE+K K +G+ VD+
Sbjct: 31 IVRDLFASVRDVVGGRSGAYESKLKEARDIAMEEMKTLARQKNANAIVGIDVDY 84
>sp|Q6HBA8|Y4859_BACHK UPF0145 protein BT9727_4859 OS=Bacillus thuringiensis subsp.
konkukian (strain 97-27) GN=BT9727_4859 PE=3 SV=1
Length = 103
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 45 FPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDH 98
R +R VV G++ Y KL+ R +EE+K K +G+ VD+
Sbjct: 31 IVRDLFASVRDVVGGRSGAYESKLKEARDIAMEEMKTLARQKNANAIVGIDVDY 84
>sp|B4RKY2|SECA_NEIG2 Protein translocase subunit SecA OS=Neisseria gonorrhoeae (strain
NCCP11945) GN=secA PE=3 SV=1
Length = 916
Score = 32.0 bits (71), Expect = 3.2, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 72 RGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQ 113
R F L+ +AA I +LAP GV+++H R +EG Q V+
Sbjct: 598 RLFALD--RAAAILNRLAPERGVAIEHNLLTRQIEGAQRKVE 637
>sp|Q5F807|SECA_NEIG1 Protein translocase subunit SecA OS=Neisseria gonorrhoeae (strain
ATCC 700825 / FA 1090) GN=secA PE=3 SV=1
Length = 916
Score = 32.0 bits (71), Expect = 3.2, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 72 RGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQ 113
R F L+ +AA I +LAP GV+++H R +EG Q V+
Sbjct: 598 RLFALD--RAAAILNRLAPERGVAIEHNLLTRQIEGAQRKVE 637
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,163,557
Number of Sequences: 539616
Number of extensions: 2952098
Number of successful extensions: 8131
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8051
Number of HSP's gapped (non-prelim): 65
length of query: 206
length of database: 191,569,459
effective HSP length: 112
effective length of query: 94
effective length of database: 131,132,467
effective search space: 12326451898
effective search space used: 12326451898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)