Query 028624
Match_columns 206
No_of_seqs 126 out of 285
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 14:25:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3295 60S Ribosomal protein 100.0 3.7E-95 8E-100 615.9 12.0 205 1-206 1-205 (205)
2 PTZ00352 60S ribosomal protein 100.0 1.7E-94 3.6E-99 618.5 15.0 202 1-203 1-211 (212)
3 PTZ00192 60S ribosomal protein 100.0 1.2E-92 2.5E-97 608.8 14.3 198 1-204 2-214 (218)
4 PF01294 Ribosomal_L13e: Ribos 100.0 7.4E-89 1.6E-93 572.6 5.9 179 5-183 1-179 (179)
5 COG4352 RPL13 Ribosomal protei 100.0 5.9E-44 1.3E-48 280.8 6.0 113 13-126 1-113 (113)
6 PRK12277 50S ribosomal protein 100.0 1.3E-37 2.9E-42 234.5 6.1 73 46-123 2-79 (83)
7 COG4352 RPL13 Ribosomal protei 74.6 2 4.4E-05 34.7 1.8 80 37-123 21-106 (113)
8 PF07963 N_methyl: Prokaryotic 49.2 9.1 0.0002 22.2 0.9 11 72-82 1-11 (20)
9 PF09278 MerR-DNA-bind: MerR, 47.2 11 0.00023 25.8 1.1 11 72-82 13-23 (65)
10 PF14265 DUF4355: Domain of un 45.2 15 0.00033 28.5 1.9 40 76-123 75-114 (125)
11 PF13544 N_methyl_2: Type IV p 41.8 13 0.00028 23.2 0.8 17 66-82 8-24 (31)
12 PF13318 DUF4089: Protein of u 38.0 14 0.0003 25.7 0.5 36 88-127 5-40 (50)
13 PRK07203 putative chlorohydrol 36.7 26 0.00057 32.4 2.3 34 55-98 279-313 (442)
14 PRK06886 hypothetical protein; 36.1 31 0.00067 31.8 2.7 39 55-99 238-282 (329)
15 PF08667 BetR: BetR domain; I 34.3 13 0.00029 31.1 0.0 28 65-98 40-67 (147)
16 smart00729 Elp3 Elongator prot 28.4 95 0.002 23.9 3.9 39 76-119 103-149 (216)
17 cd06410 PB1_UP2 Uncharacterize 26.0 46 0.001 25.8 1.7 31 43-82 7-41 (97)
18 PF09950 DUF2184: Uncharacteri 22.3 17 0.00036 32.1 -1.5 46 66-125 29-74 (249)
19 TIGR01626 ytfJ_HI0045 conserve 22.1 58 0.0013 27.9 1.8 27 75-101 80-107 (184)
20 PF08097 Toxin_26: Conotoxin T 21.8 33 0.00071 17.4 0.1 8 58-65 2-9 (11)
21 TIGR02532 IV_pilin_GFxxxE prep 20.9 49 0.0011 19.8 0.8 11 72-82 2-12 (26)
22 COG1999 Uncharacterized protei 20.7 84 0.0018 26.9 2.5 31 87-127 103-133 (207)
23 TIGR03314 Se_ssnA putative sel 20.2 58 0.0013 30.4 1.5 28 55-86 278-306 (441)
24 TIGR03447 mycothiol_MshC cyste 20.0 2.6E+02 0.0055 27.0 5.8 71 53-123 273-347 (411)
No 1
>KOG3295 consensus 60S Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-95 Score=615.91 Aligned_cols=205 Identities=65% Similarity=0.956 Sum_probs=202.6
Q ss_pred CCcCCCCCCCcccccchhhhhhhcCCchhHHHHHHHHHHHHHhhCCCCCCCCCCCeeecCccccccccccCCCCCHHHHH
Q 028624 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELK 80 (206)
Q Consensus 1 ~k~Nn~ipn~HF~K~Wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~g~lrPiVrcpt~ryn~k~r~GRGFsl~Elk 80 (206)
|+|||||||+|||||||++|+||||||++|.+|+++|++||.+|||||++ +|||||||||++||+++|+||||||+||+
T Consensus 1 ~k~n~~ipn~Hf~K~wq~~vktwfnqp~rk~rrr~~r~~kA~~i~PrP~~-~lRPvVrcptirYn~k~RaGRGFtleElk 79 (205)
T KOG3295|consen 1 MKGNNMIPNNHFRKHWQKRVKTWFNQPARKTRRRQARQKKAVKIAPRPLS-LLRPVVRCPTIRYNRKVRAGRGFTLEELK 79 (205)
T ss_pred CCCCCcCCchhhHHHHHHHHHHHcCchHHHHHHHHHHHhhhhccCCCchh-hcCCcccccchhhhhhhhccCCccHHHHH
Confidence 89999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HcCCCCCcccccceeecccccccchhhHHHHHHHHHHHHhhhccccCccccccCCCCChHHhhhhhhccCcccccCCCCC
Q 028624 81 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKP 160 (206)
Q Consensus 81 ~aGi~~k~A~tiGI~VD~RRkn~S~Esl~~Nv~rLk~y~sklilfPrk~~kpkkgDs~~ee~~~a~Q~~~~vmPi~~~~~ 160 (206)
+|||+.++|+||||+||+||+|+|+|+||.||||||+|+|+|||||+++++||+||||+||+++++|+.|++|||.+...
T Consensus 80 ~AGi~k~~A~tiGIaVD~RRrn~s~E~lqaNvqRlKey~sklilfprk~~apkkGdSsaeel~~atq~~g~~mPi~~~~~ 159 (205)
T KOG3295|consen 80 AAGISKKVARTIGIAVDHRRRNRSQEGLQANVQRLKEYKSKLILFPRKASAPKKGDSSAEELKLATQLTGPVMPIVNVYA 159 (205)
T ss_pred HcCccHhhccceeeeecccccCccHHHHHHhHHHHHHhhcceEEeecCcCCCcCCCCcHHHHHhhhhhcCCCcCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccchHHHHHHHHHhhchhhhhhhhHHHHHhhhhcC
Q 028624 161 TVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKAAEAEKEEKK 206 (206)
Q Consensus 161 ~~~~~~It~eek~~~ay~~LR~ar~~~r~~G~r~kra~~~ae~~~~ 206 (206)
.+++++||+||++|+||++||+||+|+|+.|+|+|||+|++|+|++
T Consensus 160 ~eEa~~~t~e~k~f~Af~~lr~aRa~ar~~g~raKRa~Eaae~EkK 205 (205)
T KOG3295|consen 160 KEEARVVTDEEKNFKAFRTLRLARANARLAGIRAKRAKEAAEEEKK 205 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999998753
No 2
>PTZ00352 60S ribosomal protein L13; Provisional
Probab=100.00 E-value=1.7e-94 Score=618.50 Aligned_cols=202 Identities=51% Similarity=0.840 Sum_probs=197.8
Q ss_pred CCcCCCCCCCcccccchhhhhhhcCCchhHHHHHHHHHHHHHhhCCCCCCCCCCCeeecCccccccccccCCCCCHHHHH
Q 028624 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELK 80 (206)
Q Consensus 1 ~k~Nn~ipn~HF~K~Wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~g~lrPiVrcpt~ryn~k~r~GRGFsl~Elk 80 (206)
|+|||+|||+|||||||++|+||||||++|++||++|++||++|||||++ +|||||||||++||+++|+||||||+||+
T Consensus 1 mkhNn~lpn~HF~K~Wq~~VktwFnQp~rK~rRR~aR~~KA~~i~prP~~-~LrPiVrcpT~ryn~k~R~GRGFtl~ELk 79 (212)
T PTZ00352 1 MKHNNVLPNVHLHKHWQRFVKTWYNQPGRKKRRRLARQKKAAAAGPRPVE-LLRPVVHGPTQRYNMKVRLGRGFTLEELK 79 (212)
T ss_pred CCcCCCCCchhhhHHHHhhcccccCchHHHHHHHHHHHHHHHHhCCCCcc-cCCcceecccccccceeeccCCCCHHHHH
Confidence 89999999999999999999999999999999999999999999999975 99999999999999999999999999999
Q ss_pred HcCCCCCcccccceeecccccccchhhHHHHHHHHHHHHhhhccccCccccccCC------CCChHHhhh--hh-hccCc
Q 028624 81 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAG------DSAPEELAT--AT-QVQGP 151 (206)
Q Consensus 81 ~aGi~~k~A~tiGI~VD~RRkn~S~Esl~~Nv~rLk~y~sklilfPrk~~kpkkg------Ds~~ee~~~--a~-Q~~~~ 151 (206)
+|||+.++|+||||+||+||+|+|+|||+.|||||++|+|+|||||++.++|||| |+++||+++ ++ |+.|.
T Consensus 80 aaGi~~~~ArtiGI~VD~RR~n~s~Esl~~Nv~rLk~y~skLvlFPrk~~k~kkG~~gip~Dss~ee~~~~~a~~q~~g~ 159 (212)
T PTZ00352 80 AAGLNAQAARSIGIAVDHRRRNRSQESLNLNVKRLKAYLSKLVLFPRKGKKPKKGFAGIPADTSKEEVVALPVKQNKNSE 159 (212)
T ss_pred HcCCCHHHhcccceeeccccccCcHHHHHHHHHHHHHHHHheeeecCCCCccccCCCCCCCCCCHHHHHHHHHHHhhcCc
Confidence 9999999999999999999999999999999999999999999999999999999 999999998 77 89999
Q ss_pred ccccCCCCCcccccccccccccchHHHHHHHHHhhchhhhhhhhHHHHHhhh
Q 028624 152 YMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKAAEAEKE 203 (206)
Q Consensus 152 vmPi~~~~~~~~~~~It~eek~~~ay~~LR~ar~~~r~~G~r~kra~~~ae~ 203 (206)
+|||.+..+.+++++||+||++|+||.+||+||++++++|+|+|+|+++++.
T Consensus 160 vmPi~~~~~~~~~r~it~eek~~~Ay~tLR~aR~~ar~~G~r~kra~~k~~~ 211 (212)
T PTZ00352 160 VIPFQRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGKKEKKKQAKEKK 211 (212)
T ss_pred eecccccccccccccCCHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999988764
No 3
>PTZ00192 60S ribosomal protein L13; Provisional
Probab=100.00 E-value=1.2e-92 Score=608.81 Aligned_cols=198 Identities=48% Similarity=0.721 Sum_probs=191.4
Q ss_pred CCcCCCCCCCcccccchhh------hhhhcCCchhHHHHHHHHHHHHHhhCCCCCCCCCCCeeecCccccccccccCCCC
Q 028624 1 MKHNNVIPNGHFKKHWQNY------VKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGF 74 (206)
Q Consensus 1 ~k~Nn~ipn~HF~K~Wq~r------VktwFnQp~rK~rRr~~R~~KA~~i~PrP~~g~lrPiVrcpt~ryn~k~r~GRGF 74 (206)
|+|||+|||+|||||||++ |+||||||++|++||++|++||++|||||++ +|||||||||++||+++|+||||
T Consensus 2 ~khNn~ipn~HF~K~Wq~~~~~~~~VktwFnQP~rK~rRR~~R~~KA~~iaPRP~~-~LRPiVrcPT~rYN~kvR~GRGF 80 (218)
T PTZ00192 2 PKGNNAIPHVHQRKHWNPCSSQKGNVKVFLNQPAQKHRRRRLRLLKAKKIFPRPLK-ALRPQVNCPTVRHNMKQRLGRGF 80 (218)
T ss_pred CcccCCCCchHHHhHHhhhcccCCceeeecCchHHHHHHHHHHHHHHHHhCCCCCc-cCCccccCCcccccceeeccCCc
Confidence 4899999999999999999 9999999999999999999999999999975 99999999999999999999999
Q ss_pred CHHHHHHcCCCCCcccccceeecccccccchhhHHHHHHHHHHHHhhhccccCccccccCCCCChHHhhhhhh-------
Q 028624 75 TLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ------- 147 (206)
Q Consensus 75 sl~Elk~aGi~~k~A~tiGI~VD~RRkn~S~Esl~~Nv~rLk~y~sklilfPrk~~kpkkgDs~~ee~~~a~Q------- 147 (206)
||+||++|||+.++|+||||+||+||+|+|+|||+.|||||++|+|+|||||++.++|||||+++||++.++|
T Consensus 81 tl~ELk~aGi~~~~ArtiGI~VD~RR~n~s~Esl~~Nv~rLk~Y~skLilFPrk~~k~kkgds~~ee~k~a~Q~~~~~~~ 160 (218)
T PTZ00192 81 SLAELKAAGLNPRFARTIGIRVDRRRKNKSEEGMNVNVQRLKTYMSKLVLFPMNHKKVQKGEAKEEEVKAATQDRSRFGD 160 (218)
T ss_pred CHHHHHHcCCCHHHhcccceeeccccccccHHHHHHHHHHHHHHHHheeeeccccCCCCCCCCCHHHHHHHHhhhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --ccCcccccCCCCCcccccccccccccchHHHHHHHHHhhchhhhhhhhHHHHHhhhh
Q 028624 148 --VQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKAAEAEKEE 204 (206)
Q Consensus 148 --~~~~vmPi~~~~~~~~~~~It~eek~~~ay~~LR~ar~~~r~~G~r~kra~~~ae~~ 204 (206)
+.|.+||| .+++++||+||++|+||.+||+||++++++|+|+|+|++++..+
T Consensus 161 ~~~~g~v~Pi-----~~~~~~it~eek~~~Ay~~LR~aR~~~r~~G~r~krak~~~~~~ 214 (218)
T PTZ00192 161 AAVGGVVTPS-----REAPRVVSKEERSKNVYAFLKKNHSAVRFFGVRSRRAARKEAKK 214 (218)
T ss_pred ccccCccccc-----ccccccCCHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHhh
Confidence 66899999 47899999999999999999999999999999999998776543
No 4
>PF01294 Ribosomal_L13e: Ribosomal protein L13e; InterPro: IPR001380 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal protein L13e is widely found in vertebrates [], Drosophila melanogaster, plants, yeast, amongst others.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A18_U 4A1B_U 4A1D_U 4A19_U.
Probab=100.00 E-value=7.4e-89 Score=572.61 Aligned_cols=179 Identities=63% Similarity=0.986 Sum_probs=123.2
Q ss_pred CCCCCCcccccchhhhhhhcCCchhHHHHHHHHHHHHHhhCCCCCCCCCCCeeecCccccccccccCCCCCHHHHHHcCC
Q 028624 5 NVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGI 84 (206)
Q Consensus 5 n~ipn~HF~K~Wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~g~lrPiVrcpt~ryn~k~r~GRGFsl~Elk~aGi 84 (206)
|||||+|||||||++|+||||||++|++||++|++||++++|+|++|+|||||||||+|||+++|+||||||+||++|||
T Consensus 1 n~ipn~Hf~K~Wq~rVktwFnQp~rK~rRr~~R~~KA~~i~prP~~g~LrPiVrcpt~rYn~k~r~GRGFsl~ELk~aGi 80 (179)
T PF01294_consen 1 NVIPNNHFRKDWQRRVKTWFNQPARKKRRRQARQAKAAKIAPRPVSGPLRPIVRCPTVRYNTKVRLGRGFSLEELKAAGI 80 (179)
T ss_dssp -------SSS-GGGS----THHHHHHHHHHHHHHHHHHHHTTS-SS--B--EEE-SSTTTTTSEEE-SSB-HHHHHHHT-
T ss_pred CCcccccchhhhhhhhhhhcCcHHHHHHHHHHHHHHHHhcCCCCcchhhHhhhhccceecccccccCCCcCHHHHHHcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccceeecccccccchhhHHHHHHHHHHHHhhhccccCccccccCCCCChHHhhhhhhccCcccccCCCCCcccc
Q 028624 85 PKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDL 164 (206)
Q Consensus 85 ~~k~A~tiGI~VD~RRkn~S~Esl~~Nv~rLk~y~sklilfPrk~~kpkkgDs~~ee~~~a~Q~~~~vmPi~~~~~~~~~ 164 (206)
+.++|+||||+||+||+|+|+|||++|||||++|+|+|||||++.++||+|||++||+++|+|+.|++|||.+..+.+++
T Consensus 81 ~~~~A~tiGI~VD~RR~n~s~Esl~~Nv~RLkeY~sklilfPrk~~~~kkGdss~ee~k~a~q~~~~v~Pi~~~~~~~~~ 160 (179)
T PF01294_consen 81 SKKYARTIGISVDHRRKNKSEESLQANVQRLKEYKSKLILFPRKAKKPKKGDSSAEELKLATQLKGPVMPIRKVKKKEKA 160 (179)
T ss_dssp -HHHHHHHTB-B-TT----SHHHHHHHHHHHHHHHHT-----SSS---TTT--TTHHHH-----HHHHS-----------
T ss_pred ChHHccccCeeeccccCCccHHHHHHHHHHHHhhhhhceeecCccccccccCCCHHHHHHHHhhcCceeeecCCcCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchHHHHHHHH
Q 028624 165 VKVTQDMKSFKAYDKLRIE 183 (206)
Q Consensus 165 ~~It~eek~~~ay~~LR~a 183 (206)
+.||+||++|+||.+||+|
T Consensus 161 r~it~eek~~~af~~LR~a 179 (179)
T PF01294_consen 161 RAITEEEKKFSAFRTLRMA 179 (179)
T ss_dssp HHHHHHHTTS-HHHHHHHH
T ss_pred ccCCHHHhhhhHHHHHhcC
Confidence 9999999999999999986
No 5
>COG4352 RPL13 Ribosomal protein L13E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.9e-44 Score=280.75 Aligned_cols=113 Identities=52% Similarity=0.825 Sum_probs=111.7
Q ss_pred cccchhhhhhhcCCchhHHHHHHHHHHHHHhhCCCCCCCCCCCeeecCccccccccccCCCCCHHHHHHcCCCCCccccc
Q 028624 13 KKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTI 92 (206)
Q Consensus 13 ~K~Wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~g~lrPiVrcpt~ryn~k~r~GRGFsl~Elk~aGi~~k~A~ti 92 (206)
+|+||.+|++||||++++.+|+++++.+|++++|+|.+ .++|+|+|||+.||+++|+||||||+||++|||+.+.|++|
T Consensus 1 ~k~~~l~vk~h~d~~~k~~~~~~~~~~~a~~~a~~Pk~-~vk~p~~~~~~~~nrk~R~GRGFslgEl~aAGL~~~~AR~L 79 (113)
T COG4352 1 RKHWQLRVKVHFDQAGKKVSRRNARLTKAAKIAPRPKA-LVKPPVRAPTGKYNRKVRAGRGFSLGELKAAGLSARKARTL 79 (113)
T ss_pred CchHHHHHHHHhChhhhHHHHHhhhhhhccccCCCcHH-HccCCccCCccCcccceeccCCccHHHHHHcCcCHHHHHhh
Confidence 58999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred ceeecccccccchhhHHHHHHHHHHHHhhhcccc
Q 028624 93 GVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFP 126 (206)
Q Consensus 93 GI~VD~RRkn~S~Esl~~Nv~rLk~y~sklilfP 126 (206)
||+||+||+|.++|+++.||++|++|++++++||
T Consensus 80 GI~VD~RRr~~~~en~eal~k~ik~ll~~~~~~p 113 (113)
T COG4352 80 GIAVDHRRRNRNPENFEALVKRIKELLEKIIVFP 113 (113)
T ss_pred CcceehhhccCCHHHHHHHHHHHHHHHhcCccCC
Confidence 9999999999999999999999999999999998
No 6
>PRK12277 50S ribosomal protein L13e; Provisional
Probab=100.00 E-value=1.3e-37 Score=234.53 Aligned_cols=73 Identities=36% Similarity=0.584 Sum_probs=70.4
Q ss_pred CCCCCCCCCCeeecCcccccc-----ccccCCCCCHHHHHHcCCCCCcccccceeecccccccchhhHHHHHHHHHHHHh
Q 028624 46 PRPTAGPLRPVVHGQTLKYNM-----KLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120 (206)
Q Consensus 46 PrP~~g~lrPiVrcpt~ryn~-----k~r~GRGFsl~Elk~aGi~~k~A~tiGI~VD~RRkn~S~Esl~~Nv~rLk~y~s 120 (206)
++|++ +|||||+|||++||+ ++|+||||||+||++|||++++|+||||+||+||+|+|+| ||||||+|+|
T Consensus 2 ~~~~~-~lrPiVr~Pt~ryn~gg~~~k~R~GRGFsl~ELkaaGi~~~~ArtiGI~VD~RRrn~~~e----NVerLk~y~s 76 (83)
T PRK12277 2 REEME-PPKAIVKRPNYRFEYGGKRKDKRIGRGFSIGELEAAGLDIKNARKLGIRVDKRRKTVHEE----NVEALKKFLE 76 (83)
T ss_pred CCCcC-CCCCceeCCceecccCCCCCceeecCCcCHHHHHHcCCCHHHhcccCeeecccccCCCHH----HHHHHHHHHH
Confidence 67898 999999999999999 9999999999999999999999999999999999999876 9999999999
Q ss_pred hhc
Q 028624 121 KLV 123 (206)
Q Consensus 121 kli 123 (206)
+|-
T Consensus 77 kL~ 79 (83)
T PRK12277 77 QLG 79 (83)
T ss_pred Hhc
Confidence 985
No 7
>COG4352 RPL13 Ribosomal protein L13E [Translation, ribosomal structure and biogenesis]
Probab=74.59 E-value=2 Score=34.75 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=61.8
Q ss_pred HHHHHHhhCCCCCCCCCCCeeecCccccccccccCCCCCHHHHHHcCCCCCcccccceeeccccc------ccchhhHHH
Q 028624 37 RQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRK------NRSLEGLQS 110 (206)
Q Consensus 37 R~~KA~~i~PrP~~g~lrPiVrcpt~ryn~k~r~GRGFsl~Elk~aGi~~k~A~tiGI~VD~RRk------n~S~Esl~~ 110 (206)
+..+-..-++.+++ .+.++|+.|. |..-.+.-|+.-+ .-|++.-+-...|.++|+-|+ .+-..++++
T Consensus 21 ~~~~~~~~a~~~a~-~Pk~~vk~p~--~~~~~~~nrk~R~----GRGFslgEl~aAGL~~~~AR~LGI~VD~RRr~~~~e 93 (113)
T COG4352 21 RRNARLTKAAKIAP-RPKALVKPPV--RAPTGKYNRKVRA----GRGFSLGELKAAGLSARKARTLGIAVDHRRRNRNPE 93 (113)
T ss_pred HHhhhhhhccccCC-CcHHHccCCc--cCCccCcccceec----cCCccHHHHHHcCcCHHHHHhhCcceehhhccCCHH
Confidence 44445567888998 8999999995 5555555555433 478898899999999999986 456678999
Q ss_pred HHHHHHHHHhhhc
Q 028624 111 NVQRLKTYKAKLV 123 (206)
Q Consensus 111 Nv~rLk~y~skli 123 (206)
|+|+|++|...|.
T Consensus 94 n~eal~k~ik~ll 106 (113)
T COG4352 94 NFEALVKRIKELL 106 (113)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 8
>PF07963 N_methyl: Prokaryotic N-terminal methylation motif; InterPro: IPR012902 This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N terminus of pilins and other proteins involved in secretion, see IPR001082 from INTERPRO, IPR010271 from INTERPRO, IPR003413 from INTERPRO and IPR011453 from INTERPRO. This model describes many (but not all) examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N terminus []. This domain contains a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue produced after cleavage, usually Phe, is methylated. Separate domains of the prepilin peptidase appear to be responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this region.
Probab=49.23 E-value=9.1 Score=22.24 Aligned_cols=11 Identities=64% Similarity=0.851 Sum_probs=8.9
Q ss_pred CCCCHHHHHHc
Q 028624 72 RGFTLEELKAA 82 (206)
Q Consensus 72 RGFsl~Elk~a 82 (206)
|||||=|+-.+
T Consensus 1 ~GFTLiE~~v~ 11 (20)
T PF07963_consen 1 KGFTLIELLVA 11 (20)
T ss_pred CceeHHHHHHH
Confidence 79999998654
No 9
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=47.18 E-value=11 Score=25.79 Aligned_cols=11 Identities=45% Similarity=0.860 Sum_probs=7.8
Q ss_pred CCCCHHHHHHc
Q 028624 72 RGFTLEELKAA 82 (206)
Q Consensus 72 RGFsl~Elk~a 82 (206)
=||||+|++..
T Consensus 13 lGfsL~eI~~~ 23 (65)
T PF09278_consen 13 LGFSLEEIREL 23 (65)
T ss_dssp TT--HHHHHHH
T ss_pred cCCCHHHHHHH
Confidence 49999999987
No 10
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=45.18 E-value=15 Score=28.48 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=31.9
Q ss_pred HHHHHHcCCCCCcccccceeecccccccchhhHHHHHHHHHHHHhhhc
Q 028624 76 LEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLV 123 (206)
Q Consensus 76 l~Elk~aGi~~k~A~tiGI~VD~RRkn~S~Esl~~Nv~rLk~y~skli 123 (206)
..-|..+||+..+|..| ..-..|.+..||+.|.+++...+
T Consensus 75 ~~~l~e~GLp~~l~~~l--------~g~d~e~~~~~v~~l~~~~~~~v 114 (125)
T PF14265_consen 75 KKVLAEKGLPAELADFL--------VGDDEEETKANVKALKKLFNKAV 114 (125)
T ss_pred HHHHHHcCCCHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHH
Confidence 34577889999987776 24478999999999999988765
No 11
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=41.80 E-value=13 Score=23.21 Aligned_cols=17 Identities=53% Similarity=0.628 Sum_probs=5.7
Q ss_pred cccccCCCCCHHHHHHc
Q 028624 66 MKLRAGRGFTLEELKAA 82 (206)
Q Consensus 66 ~k~r~GRGFsl~Elk~a 82 (206)
...+.-+||||=|+-.|
T Consensus 8 ~~~~~~~GFTLiEllVa 24 (31)
T PF13544_consen 8 RRRRRQRGFTLIELLVA 24 (31)
T ss_dssp ----------HHHHHHH
T ss_pred ccccccCCccHHHHHHH
Confidence 34456799999998765
No 12
>PF13318 DUF4089: Protein of unknown function (DUF4089)
Probab=37.99 E-value=14 Score=25.66 Aligned_cols=36 Identities=22% Similarity=0.516 Sum_probs=31.7
Q ss_pred cccccceeecccccccchhhHHHHHHHHHHHHhhhccccC
Q 028624 88 LAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPR 127 (206)
Q Consensus 88 ~A~tiGI~VD~RRkn~S~Esl~~Nv~rLk~y~sklilfPr 127 (206)
.|..+|.++|.-++. .+..|.+|+..+-+=|.=||.
T Consensus 5 ~a~llgL~l~~~~r~----~V~~n~~ri~~mA~~v~~fpL 40 (50)
T PF13318_consen 5 MAALLGLPLDEEWRP----GVVANFERIAAMAQLVMEFPL 40 (50)
T ss_pred HHHHcCCCCCHHHHH----HHHHHHHHHHHHHHHHHcCCC
Confidence 467899999998876 789999999999999998987
No 13
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=36.66 E-value=26 Score=32.39 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=24.5
Q ss_pred CeeecCccccccccccCCC-CCHHHHHHcCCCCCcccccceeecc
Q 028624 55 PVVHGQTLKYNMKLRAGRG-FTLEELKAAGIPKKLAPTIGVSVDH 98 (206)
Q Consensus 55 PiVrcpt~ryn~k~r~GRG-Fsl~Elk~aGi~~k~A~tiGI~VD~ 98 (206)
.|++||+ -| .++|.| +.+.|+.++||+ +||..|-
T Consensus 279 ~v~~~P~--sn--~~l~~g~~p~~~~~~~Gv~------v~lGtD~ 313 (442)
T PRK07203 279 FVVHNPE--SN--MGNAVGYNPVLEMIKNGIL------LGLGTDG 313 (442)
T ss_pred eEEECch--hh--hhcccCCCCHHHHHHCCCe------EEEcCCC
Confidence 4788886 23 446666 578999999986 6666673
No 14
>PRK06886 hypothetical protein; Validated
Probab=36.06 E-value=31 Score=31.76 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=25.7
Q ss_pred CeeecCcc-----ccccccccCCCCC-HHHHHHcCCCCCcccccceeeccc
Q 028624 55 PVVHGQTL-----KYNMKLRAGRGFT-LEELKAAGIPKKLAPTIGVSVDHR 99 (206)
Q Consensus 55 PiVrcpt~-----ryn~k~r~GRGFs-l~Elk~aGi~~k~A~tiGI~VD~R 99 (206)
.||.||+. ........|||++ +.||.++||++ |+..|-=
T Consensus 238 ~Vv~~P~snl~l~~~~~~~p~~rGv~pv~eL~~aGV~V------~lGtDnv 282 (329)
T PRK06886 238 MVIACPMAWIDSNRKEDLMPFHNALTPADEMIPEGITV------ALGTDNI 282 (329)
T ss_pred eEEECchhhhhhccccccCcCCCCCCCHHHHHHCCCeE------EEecCCC
Confidence 48889873 1112245689975 68999999764 5556643
No 15
>PF08667 BetR: BetR domain; InterPro: IPR013975 CheY-like phosphoacceptor (or receiver [REC]) domain is a common module in a variety of response regulators of the bacterial signal transduction systems. BetR is one of the many response regulators and is encoded mainly in Burkholderia spp. It is a N-terminal helix-turn-helix domain (HTH) and has been shown to be related to the XRE-type HTH domain (IPR001387 from INTERPRO), it has been suggested that BetR would have dimerization, protein-protein interaction, and activation/relief-of-inhibition properties [].
Probab=34.27 E-value=13 Score=31.12 Aligned_cols=28 Identities=46% Similarity=0.542 Sum_probs=24.1
Q ss_pred ccccccCCCCCHHHHHHcCCCCCcccccceeecc
Q 028624 65 NMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDH 98 (206)
Q Consensus 65 n~k~r~GRGFsl~Elk~aGi~~k~A~tiGI~VD~ 98 (206)
+.|++....||++||+.. |..+|+|+|.
T Consensus 40 ~RKL~G~~~ftl~EI~~I------a~~fgvS~d~ 67 (147)
T PF08667_consen 40 YRKLNGKSPFTLEEIKKI------AKHFGVSPDE 67 (147)
T ss_pred HHHhcCCCCCCHHHHHHH------HHHhCcCHHH
Confidence 688999999999999875 6888988775
No 16
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=28.37 E-value=95 Score=23.95 Aligned_cols=39 Identities=26% Similarity=0.475 Sum_probs=30.1
Q ss_pred HHHHHHcCCCCCcccccceeecc--------cccccchhhHHHHHHHHHHHH
Q 028624 76 LEELKAAGIPKKLAPTIGVSVDH--------RRKNRSLEGLQSNVQRLKTYK 119 (206)
Q Consensus 76 l~Elk~aGi~~k~A~tiGI~VD~--------RRkn~S~Esl~~Nv~rLk~y~ 119 (206)
+++|+.+|++ .+.|++|. -+++.+.+....+++.|+++-
T Consensus 103 ~~~l~~~~~~-----~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 149 (216)
T smart00729 103 LEALKEAGVN-----RVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAG 149 (216)
T ss_pred HHHHHHcCCC-----eEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhC
Confidence 6778899875 68888884 345567788888999998887
No 17
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=25.95 E-value=46 Score=25.77 Aligned_cols=31 Identities=32% Similarity=0.701 Sum_probs=23.2
Q ss_pred hhCCCCCCCCCCCeeecCcccc----ccccccCCCCCHHHHHHc
Q 028624 43 KIFPRPTAGPLRPVVHGQTLKY----NMKLRAGRGFTLEELKAA 82 (206)
Q Consensus 43 ~i~PrP~~g~lrPiVrcpt~ry----n~k~r~GRGFsl~Elk~a 82 (206)
+|.|||.+|.| +| ..-+...|+.|+.||..-
T Consensus 7 ~i~pr~~dg~l---------~Y~GG~tr~i~V~r~~s~~el~~k 41 (97)
T cd06410 7 RILPRPPDGQL---------RYVGGETRIVSVDRSISFKELVSK 41 (97)
T ss_pred EEeCcCCCCCE---------EEcCCceEEEEEcCCCCHHHHHHH
Confidence 45688888775 77 355678899999998763
No 18
>PF09950 DUF2184: Uncharacterized protein conserved in bacteria (DUF2184); InterPro: IPR020049 This entry is represented by Bacteriophage T1, Orf47. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.31 E-value=17 Score=32.08 Aligned_cols=46 Identities=24% Similarity=0.420 Sum_probs=33.3
Q ss_pred cccccCCCCCHHHHHHcCCCCCcccccceeecccccccchhhHHHHHHHHHHHHhhhccc
Q 028624 66 MKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVF 125 (206)
Q Consensus 66 ~k~r~GRGFsl~Elk~aGi~~k~A~tiGI~VD~RRkn~S~Esl~~Nv~rLk~y~sklilf 125 (206)
..+-.|-|+|++||.+| ..+|+++|-++..-.. .-+.....+++++
T Consensus 29 ~~~g~~~~~t~~El~~a-------~~~G~~l~~~K~~aar-------~a~~~~~n~~~~~ 74 (249)
T PF09950_consen 29 FLWGIGYGYTIQELAAA-------QAAGRPLDTRKAEAAR-------RAYEMKINKIAFY 74 (249)
T ss_pred EEEEEEEEEcHHHHHHH-------HHhCCCchHHHHHHHH-------HHHHhhhhcEEEE
Confidence 45677899999999998 6789999988765322 2244556666665
No 19
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=22.13 E-value=58 Score=27.85 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=23.1
Q ss_pred CHHHHHHcCCCC-Ccccccceeeccccc
Q 028624 75 TLEELKAAGIPK-KLAPTIGVSVDHRRK 101 (206)
Q Consensus 75 sl~Elk~aGi~~-k~A~tiGI~VD~RRk 101 (206)
.+++|+++|++. +|--|+||++|-...
T Consensus 80 ~l~~l~~~~~~~~~y~~t~~IN~dd~~~ 107 (184)
T TIGR01626 80 LIDAIKAAKFPPVKYQTTTIINADDAIV 107 (184)
T ss_pred HHHHHHHcCCCcccccceEEEECccchh
Confidence 378999999998 899999999987643
No 20
>PF08097 Toxin_26: Conotoxin T-superfamily; InterPro: IPR012631 This family consists of the T-superfamily of conotoxins. Eight different T-superfamily peptides from five Conus species were identified. These peptides share a consensus signal sequence, and a conserved arrangement of cysteine residues. T-superfamily peptides were found expressed in venom ducts of all major feeding types of Conus, suggesting that the T-superfamily is a large and diverse group of peptides, widely distributed in the 500 different Conus species [].; GO: 0005576 extracellular region
Probab=21.84 E-value=33 Score=17.37 Aligned_cols=8 Identities=13% Similarity=0.335 Sum_probs=5.7
Q ss_pred ecCccccc
Q 028624 58 HGQTLKYN 65 (206)
Q Consensus 58 rcpt~ryn 65 (206)
-||.+||-
T Consensus 2 ccpviryc 9 (11)
T PF08097_consen 2 CCPVIRYC 9 (11)
T ss_pred Ccchhhee
Confidence 37888873
No 21
>TIGR02532 IV_pilin_GFxxxE prepilin-type N-terminal cleavage/methylation domain. This model describes many but not all examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N-terminus, with a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue, usually Phe, is methylated. Separate domains of the prepilin peptidase appear responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this N-terminal domain. The N-terminal cleavage and methylation site is described by PROSITE motif PS00409 as [KRHEQSTAG]-G-[FYLIVM]-[ST]-[LT]-[LIVP]-E-[LIVMFWSTAG](14).
Probab=20.91 E-value=49 Score=19.81 Aligned_cols=11 Identities=64% Similarity=0.842 Sum_probs=8.7
Q ss_pred CCCCHHHHHHc
Q 028624 72 RGFTLEELKAA 82 (206)
Q Consensus 72 RGFsl~Elk~a 82 (206)
+|||+=|+-.+
T Consensus 2 ~GfTLiEllia 12 (26)
T TIGR02532 2 RGFTLIELLVV 12 (26)
T ss_pred CceeHHHHHHH
Confidence 79999998543
No 22
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=20.69 E-value=84 Score=26.92 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=23.7
Q ss_pred CcccccceeecccccccchhhHHHHHHHHHHHHhhhccccC
Q 028624 87 KLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPR 127 (206)
Q Consensus 87 k~A~tiGI~VD~RRkn~S~Esl~~Nv~rLk~y~sklilfPr 127 (206)
...+.+=|+|||.|-+ -++|++|.+ .-.+|+
T Consensus 103 ~~v~vv~itvDPerDt---------p~~lk~Y~~-~~~~~~ 133 (207)
T COG1999 103 DDVQVVFITVDPERDT---------PEVLKKYAE-LNFDPR 133 (207)
T ss_pred CCEEEEEEEECCCCCC---------HHHHHHHhc-ccCCCC
Confidence 3345778999999997 568999999 555554
No 23
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=20.17 E-value=58 Score=30.40 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=19.6
Q ss_pred CeeecCccccccccccCCCC-CHHHHHHcCCCC
Q 028624 55 PVVHGQTLKYNMKLRAGRGF-TLEELKAAGIPK 86 (206)
Q Consensus 55 PiVrcpt~ryn~k~r~GRGF-sl~Elk~aGi~~ 86 (206)
.||+||+ -|+ ++|.|+ .+.++.++||++
T Consensus 278 ~v~~cP~--sn~--~l~~G~~p~~~~~~~Gv~v 306 (441)
T TIGR03314 278 FVVHNPE--SNM--GNAVGYNPVLRMFKNGILL 306 (441)
T ss_pred cEEECHH--HHh--hhccCCCCHHHHHHCCCEE
Confidence 4788886 233 456655 689999999754
No 24
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=20.04 E-value=2.6e+02 Score=27.03 Aligned_cols=71 Identities=21% Similarity=0.219 Sum_probs=56.6
Q ss_pred CCCeeecCccccc---cccccCCCCCHHHHHHcCCCCCcccccceeeccccc-ccchhhHHHHHHHHHHHHhhhc
Q 028624 53 LRPVVHGQTLKYN---MKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRK-NRSLEGLQSNVQRLKTYKAKLV 123 (206)
Q Consensus 53 lrPiVrcpt~ryn---~k~r~GRGFsl~Elk~aGi~~k~A~tiGI~VD~RRk-n~S~Esl~~Nv~rLk~y~skli 123 (206)
.+=++|+-.+..+ |--.+|-.+++.||...|.+...-|..=.+.++|.. |-|.|.++.-..+|+.+..-+.
T Consensus 273 ~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~Yr~pl~fs~e~l~~a~~~l~rl~~~~~ 347 (411)
T TIGR03447 273 ARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGHYRQDRDWTDAVLAEAEARLARWRAALA 347 (411)
T ss_pred ceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCCCCCCCccCHHHHHHHHHHHHHHHHHHh
Confidence 3557777776664 445689999999998889998888888889999987 7788888887777777666554
Done!