Query 028624
Match_columns 206
No_of_seqs 126 out of 285
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 00:14:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028624.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028624hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a18_U RPL13, 60S ribosomal pr 100.0 1.5E-99 5E-104 646.8 11.5 203 1-204 1-205 (206)
2 3u5e_L 60S ribosomal protein L 100.0 1.2E-93 4.2E-98 607.6 13.2 193 1-205 3-195 (199)
3 1q08_A Zn(II)-responsive regul 28.9 22 0.00074 25.0 1.4 11 72-82 15-25 (99)
4 4hde_A SCO1/SENC family lipopr 26.4 55 0.0019 24.8 3.4 34 78-123 61-94 (170)
5 2ev1_A Hypothetical protein RV 25.3 22 0.00074 30.4 1.0 15 69-83 47-61 (222)
6 1b0n_B Protein (SINI protein); 21.0 39 0.0013 23.2 1.4 11 72-82 25-35 (57)
7 4dac_A Computationally designe 20.1 70 0.0024 19.1 2.2 16 107-122 5-20 (28)
8 3tev_A Glycosyl hyrolase, fami 19.5 39 0.0013 30.2 1.5 23 77-99 119-141 (351)
9 1g6u_A Domain swapped dimer; d 19.4 45 0.0015 22.1 1.4 11 72-82 15-25 (48)
10 2fcg_F Cationic, antibacterial 14.5 1E+02 0.0035 18.3 2.0 18 106-123 3-20 (26)
No 1
>4a18_U RPL13, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_U 4a1b_U 4a1d_U
Probab=100.00 E-value=1.5e-99 Score=646.77 Aligned_cols=203 Identities=42% Similarity=0.638 Sum_probs=199.8
Q ss_pred CCcCCCCCCCcccccchhhhhhhcCCchhHHHHHHHHHHHHHhhCCCCCCCCCCCeeecCccccccccccCCCCCHHHHH
Q 028624 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELK 80 (206)
Q Consensus 1 ~k~Nn~ipn~HF~K~Wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~g~lrPiVrcpt~ryn~k~r~GRGFsl~Elk 80 (206)
|+|||||||+|||||||++|+||||||++|.+||++|++||++|||||++ +|||||||||++||+++|+||||||+||+
T Consensus 1 ~k~Nn~ipn~HF~K~Wq~rVktwFnQp~rK~rRr~aR~~KA~~iaPrP~~-~LRPiVrcPT~rYn~kvR~GRGFsl~Elk 79 (206)
T 4a18_U 1 MKHNNQLPVAQLRKHQQFRIKTFFNQAAQKKARLHARRAQAAAVFPRPTE-KLQPVVRKQTQRYNKSTKLGRGFTLQELK 79 (206)
T ss_dssp CCSSSCCCCCCSSSCGGGSCCCCTHHHHHHHHHHHHHHHHHHHHTTSCSS-CBCCEEECSSTTTTTSEEECSSBCHHHHH
T ss_pred CCCCCcCCCccccchHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCCCcc-cccCceeCCcccccccccCCCCcCHHHHH
Confidence 89999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HcCCCCCcccccceeecccccccchhhHHHHHHHHHHHHhhhccccCccccccCC--CCChHHhhhhhhccCcccccCCC
Q 028624 81 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAG--DSAPEELATATQVQGPYMPITLE 158 (206)
Q Consensus 81 ~aGi~~k~A~tiGI~VD~RRkn~S~Esl~~Nv~rLk~y~sklilfPrk~~kpkkg--Ds~~ee~~~a~Q~~~~vmPi~~~ 158 (206)
+|||+.++|+||||+||+||+|+|+|||++|||||++|+|+|||||++.++|||| |||+||+++|+|++|.||||.+.
T Consensus 80 ~aGi~~~~A~tiGI~VD~RR~nkS~Esl~~Nv~rLk~y~sklIlFPrk~~k~kkG~~Dss~ee~k~a~q~~g~vmPi~~~ 159 (206)
T 4a18_U 80 AAGISAAFAQSIGIKVDHRRKNRCQESLELNKKRLLAYVSKLVLFPRHQGKAKKGLVNDTADTSSAAQNALQTSVPLPSV 159 (206)
T ss_dssp HHTCCHHHHHHHTBCBCTTCCCCSHHHHHHHHHHHHHHHHTCCCCCSSSCCCTTTTCCCTTHHHHCCCCCHHHHSCCCCC
T ss_pred HcCCCHHHhcccCeeeccccccccHhHHHHHHHHHHHHHHheEEeeCcccccccCCCCCCHHHHHHHHHhcccccCccCc
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCcccccccccccccchHHHHHHHHHhhchhhhhhhhHHHHHhhhh
Q 028624 159 KPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKAAEAEKEE 204 (206)
Q Consensus 159 ~~~~~~~~It~eek~~~ay~~LR~ar~~~r~~G~r~kra~~~ae~~ 204 (206)
++.++++.||+||++|+||.+||+||+|++++|+|+|+|+++||+.
T Consensus 160 ~~~~~~r~it~eek~~~ay~~LR~ar~~~r~~G~R~Kra~e~ae~~ 205 (206)
T 4a18_U 160 SKREKAVSNIAELRKKKVYRIIRQEKTNQKWDGKRKAKAQAAAEPK 205 (206)
T ss_dssp CCCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccccccccCChhhhcccHHHHHHHHHHhhHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999875
No 2
>3u5e_L 60S ribosomal protein L13-A, 60S ribosomal protein L11-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_L 4b6a_L
Probab=100.00 E-value=1.2e-93 Score=607.63 Aligned_cols=193 Identities=44% Similarity=0.688 Sum_probs=189.7
Q ss_pred CCcCCCCCCCcccccchhhhhhhcCCchhHHHHHHHHHHHHHhhCCCCCCCCCCCeeecCccccccccccCCCCCHHHHH
Q 028624 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELK 80 (206)
Q Consensus 1 ~k~Nn~ipn~HF~K~Wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~g~lrPiVrcpt~ryn~k~r~GRGFsl~Elk 80 (206)
|+|||+|||+|||||||++|+||||||++|.+|+++|++||++|||||++ +|||||||||++||+++|+||||||+||+
T Consensus 3 ~k~Nn~ipn~HF~K~Wq~rVktwFnQp~rK~rRr~aR~~KA~~iaPrP~~-~LRPiVrcpT~rYn~kvR~GRGFsl~ELk 81 (199)
T 3u5e_L 3 ISKNLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPLD-LLRPVVRAPTVKYNRKVRAGRGFTLAEVK 81 (199)
T ss_dssp CCSSCCCCCCCCCSSGGGGEEECTTHHHHHHHHHHHHHHHHHHTTTSCSS-CBCCEEECCHHHHTTSEEECSCCCHHHHH
T ss_pred CCCCCcCCCccccchHHHHHhhhcCChhHHHHHHHHHHHHHHHhCCCCcc-cccCceecCcccccccccCCCCcCHHHHH
Confidence 68999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HcCCCCCcccccceeecccccccchhhHHHHHHHHHHHHhhhccccCccccccCCCCChHHhhhhhhccCcccccCCCCC
Q 028624 81 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKP 160 (206)
Q Consensus 81 ~aGi~~k~A~tiGI~VD~RRkn~S~Esl~~Nv~rLk~y~sklilfPrk~~kpkkgDs~~ee~~~a~Q~~~~vmPi~~~~~ 160 (206)
+|||+.++|+||||+||+||+|+|+|||++|||||++|+|+|||||++.++|+|| |+|++|.||||.+.++
T Consensus 82 ~aGi~~k~A~tiGI~VD~RR~nks~Esl~~NVqrLk~y~sklilFPrk~~~~kkG---------atq~~g~vmPi~~~~~ 152 (199)
T 3u5e_L 82 AAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNGKAPEAE---------QVLSAAATFPIAQPAT 152 (199)
T ss_dssp HTTCCHHHHHHTTBCCCTTCCCCBHHHHHHHHHHHHHHHHTEEECCSSSCCCCCC---------CCCCSTTTSCCCCCCC
T ss_pred HcCCCHHHhcccCeeeccccccccHHHHHHHHHHHHHHHhheeEecccccccccc---------cccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999 7999999999999999
Q ss_pred cccccccccccccchHHHHHHHHHhhchhhhhhhhHHHHHhhhhc
Q 028624 161 TVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKAAEAEKEEK 205 (206)
Q Consensus 161 ~~~~~~It~eek~~~ay~~LR~ar~~~r~~G~r~kra~~~ae~~~ 205 (206)
.++++.||+| +|+||.+||+||+|++++|+|+|+|+|+||+++
T Consensus 153 ~~~~r~it~e--~~~ay~~LR~ar~~~r~~G~R~Kra~e~ae~~~ 195 (199)
T 3u5e_L 153 DVEARAVQDN--GESAFRTLRLARSEKKFRGIREKRAREKAEAEA 195 (199)
T ss_dssp SCSEECCCCC--CCCSHHHHHHHHHHHHTHHHHHHHHHHHHCCC-
T ss_pred cccccccChh--hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Confidence 9999999999 999999999999999999999999999999875
No 3
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=28.94 E-value=22 Score=24.97 Aligned_cols=11 Identities=36% Similarity=0.758 Sum_probs=9.7
Q ss_pred CCCCHHHHHHc
Q 028624 72 RGFTLEELKAA 82 (206)
Q Consensus 72 RGFsl~Elk~a 82 (206)
-||||+|++..
T Consensus 15 lGfsL~eIk~~ 25 (99)
T 1q08_A 15 LGFSLESIREL 25 (99)
T ss_dssp TTCCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 39999999986
No 4
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=26.36 E-value=55 Score=24.78 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=23.2
Q ss_pred HHHHcCCCCCcccccceeecccccccchhhHHHHHHHHHHHHhhhc
Q 028624 78 ELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLV 123 (206)
Q Consensus 78 Elk~aGi~~k~A~tiGI~VD~RRkn~S~Esl~~Nv~rLk~y~skli 123 (206)
+++..|.. -..|+|+||+-|-+ .++|++|..+.-
T Consensus 61 ~~~~~~~~---v~~v~isvDp~~Dt---------p~~l~~y~~~~~ 94 (170)
T 4hde_A 61 MAKEEKLD---VQFVSFSVDPDLDK---------PENLKAFIQKFT 94 (170)
T ss_dssp HHHHTTCC---CEEEEEESCTTTCC---------HHHHHHHHTTTC
T ss_pred hhhccccc---ceeEeeecCccccc---------HHHHHHHHHHcC
Confidence 34444443 36799999998764 456889988753
No 5
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=25.32 E-value=22 Score=30.36 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=13.3
Q ss_pred ccCCCCCHHHHHHcC
Q 028624 69 RAGRGFTLEELKAAG 83 (206)
Q Consensus 69 r~GRGFsl~Elk~aG 83 (206)
=.|||||++||+++.
T Consensus 47 L~~~G~t~~~i~~a~ 61 (222)
T 2ev1_A 47 LLEQGITPDEIRATN 61 (222)
T ss_dssp HHHTTCCHHHHHHSS
T ss_pred HHHcCCCHHHHHHHh
Confidence 368999999999986
No 6
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=21.00 E-value=39 Score=23.16 Aligned_cols=11 Identities=18% Similarity=0.308 Sum_probs=9.0
Q ss_pred CCCCHHHHHHc
Q 028624 72 RGFTLEELKAA 82 (206)
Q Consensus 72 RGFsl~Elk~a 82 (206)
-|||++|++.-
T Consensus 25 lGlsleEIref 35 (57)
T 1b0n_B 25 ANISPEEIRKY 35 (57)
T ss_dssp TTCCHHHHHHH
T ss_pred cCCCHHHHHHH
Confidence 48999999875
No 7
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=20.07 E-value=70 Score=19.05 Aligned_cols=16 Identities=44% Similarity=0.561 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHhhh
Q 028624 107 GLQSNVQRLKTYKAKL 122 (206)
Q Consensus 107 sl~~Nv~rLk~y~skl 122 (206)
.|++||.||.+-..||
T Consensus 5 kldanvkrlekevgkl 20 (28)
T 4dac_A 5 KLDANVKRLEKEVGKL 20 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eccccHHHHHHHHhhh
Confidence 4789999998776665
No 8
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans}
Probab=19.46 E-value=39 Score=30.16 Aligned_cols=23 Identities=22% Similarity=0.551 Sum_probs=21.5
Q ss_pred HHHHHcCCCCCcccccceeeccc
Q 028624 77 EELKAAGIPKKLAPTIGVSVDHR 99 (206)
Q Consensus 77 ~Elk~aGi~~k~A~tiGI~VD~R 99 (206)
.||++.||+..+|+.+.|..|++
T Consensus 119 ~E~ra~Gi~~~~aPv~Dv~r~p~ 141 (351)
T 3tev_A 119 RQLRSVGINWNFTPVLDINVNPA 141 (351)
T ss_dssp HHHHHHTCCEECCCBCCCCCCTT
T ss_pred HHHHHcCCCEeccceeEeccCCC
Confidence 58999999999999999999987
No 9
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=19.36 E-value=45 Score=22.07 Aligned_cols=11 Identities=55% Similarity=0.764 Sum_probs=9.1
Q ss_pred CCCCHHHHHHc
Q 028624 72 RGFTLEELKAA 82 (206)
Q Consensus 72 RGFsl~Elk~a 82 (206)
-|||.+||.+.
T Consensus 15 egfspeelaal 25 (48)
T 1g6u_A 15 EGFSPEELAAL 25 (48)
T ss_dssp TTCSHHHHHHH
T ss_pred cCCCHHHHHHH
Confidence 49999999764
No 10
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=14.51 E-value=1e+02 Score=18.33 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHhhhc
Q 028624 106 EGLQSNVQRLKTYKAKLV 123 (206)
Q Consensus 106 Esl~~Nv~rLk~y~skli 123 (206)
+.++.=+|+||.|+++|.
T Consensus 3 ~~~kkIgQkIkdFf~~l~ 20 (26)
T 2fcg_F 3 KEFKRIVQRIKDFLRNLV 20 (26)
T ss_dssp CSHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 346667899999999986
Done!