Query 028624
Match_columns 206
No_of_seqs 126 out of 285
Neff 3.8
Searched_HMMs 13730
Date Tue Mar 26 00:14:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028624.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028624hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q08a_ a.6.1.3 (A:) Transcrip 42.6 4.4 0.00032 27.7 1.4 11 72-82 15-25 (94)
2 d1s7oa_ a.4.13.3 (A:) Hypothet 25.4 13 0.00092 26.2 1.5 48 66-127 25-72 (106)
3 d1xsva_ a.4.13.3 (A:) Hypothet 23.5 16 0.0012 25.7 1.7 46 67-126 28-73 (106)
4 d2j5ya1 a.8.1.2 (A:1-53) PAB { 21.7 14 0.001 23.6 1.0 27 76-108 15-41 (53)
5 d1xzoa1 c.47.1.10 (A:3-174) Th 19.9 40 0.0029 23.8 3.3 37 76-124 58-94 (172)
6 d1x38a1 c.1.8.7 (A:1-388) Beta 19.0 21 0.0015 29.3 1.7 23 77-99 133-155 (388)
7 d1vqoi1 a.4.7.1 (I:71-140) Rib 15.9 23 0.0016 23.4 1.0 10 88-97 61-70 (70)
8 d1uf5a_ d.160.1.2 (A:) N-carba 14.5 27 0.002 26.6 1.3 23 106-128 18-47 (303)
9 d1tr9a_ c.1.8.7 (A:) Beta-hexo 13.7 30 0.0022 28.1 1.4 24 76-99 103-126 (330)
10 d1j31a_ d.160.1.2 (A:) Hypothe 13.0 44 0.0032 25.0 2.1 21 107-127 15-42 (262)
No 1
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=42.65 E-value=4.4 Score=27.72 Aligned_cols=11 Identities=36% Similarity=0.758 Sum_probs=9.7
Q ss_pred CCCCHHHHHHc
Q 028624 72 RGFTLEELKAA 82 (206)
Q Consensus 72 RGFsl~Elk~a 82 (206)
=||||+|++..
T Consensus 15 lGFsL~EI~~l 25 (94)
T d1q08a_ 15 LGFSLESIREL 25 (94)
T ss_dssp TTCCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 39999999986
No 2
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=25.43 E-value=13 Score=26.24 Aligned_cols=48 Identities=25% Similarity=0.430 Sum_probs=34.6
Q ss_pred cccccCCCCCHHHHHHcCCCCCcccccceeecccccccchhhHHHHHHHHHHHHhhhccccC
Q 028624 66 MKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPR 127 (206)
Q Consensus 66 ~k~r~GRGFsl~Elk~aGi~~k~A~tiGI~VD~RRkn~S~Esl~~Nv~rLk~y~sklilfPr 127 (206)
...+.--|+|.+|+.. .+|||...=+.. +..=.+.|++|-+||.++-+
T Consensus 25 ~~L~y~~~ls~~EIA~---------~lgiS~~aV~~~-----l~RA~~~L~~~e~kL~l~~~ 72 (106)
T d1s7oa_ 25 IELYYADDYSLAEIAD---------EFGVSRQAVYDN-----IKRTEKILETYEMKLHMYSD 72 (106)
T ss_dssp HHHHHHTCCCHHHHHH---------HHTCCHHHHHHH-----HHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHcCCCHHHHHH---------HHCcCHHHHHHH-----HHHHHHHHHHHHHHHChHHH
Confidence 3445567899999854 588887665443 56667889999999986633
No 3
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Probab=23.46 E-value=16 Score=25.67 Aligned_cols=46 Identities=22% Similarity=0.321 Sum_probs=33.1
Q ss_pred ccccCCCCCHHHHHHcCCCCCcccccceeecccccccchhhHHHHHHHHHHHHhhhcccc
Q 028624 67 KLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFP 126 (206)
Q Consensus 67 k~r~GRGFsl~Elk~aGi~~k~A~tiGI~VD~RRkn~S~Esl~~Nv~rLk~y~sklilfP 126 (206)
..+.=-|+|+.|+.. .+|||..-=+.. +..=.+.|++|.+||.++-
T Consensus 28 ~L~~~e~ls~~EIA~---------~lgiS~~aV~~~-----l~Ra~~~L~~ye~kL~l~~ 73 (106)
T d1xsva_ 28 ELFYLEDYSLSEIAD---------TFNVSRQAVYDN-----IRRTGDLVEDYEKKLELYQ 73 (106)
T ss_dssp HHHHTSCCCHHHHHH---------HTTCCHHHHHHH-----HHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHhCCcHHHHHH---------HHCcCHHHHHHH-----HHHHHHHHHHHHHHHChHH
Confidence 344556889998855 478887655443 5566788999999999764
No 4
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId: 1260]}
Probab=21.65 E-value=14 Score=23.62 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=16.7
Q ss_pred HHHHHHcCCCCCcccccceeecccccccchhhH
Q 028624 76 LEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGL 108 (206)
Q Consensus 76 l~Elk~aGi~~k~A~tiGI~VD~RRkn~S~Esl 108 (206)
+.||+++||+.++ .+|.=-+-+.+|..
T Consensus 15 I~eLK~~GIts~~------y~~~InkaKTVEgV 41 (53)
T d2j5ya1 15 IAELKKAGITSDF------YFNAINKAKTVEEV 41 (53)
T ss_dssp HHHHHHTTCCCHH------HHHHHHHCCSHHHH
T ss_pred HHHHHHcCccHHH------HHHHHHhhhhHHHH
Confidence 6799999996543 45544444555443
No 5
>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}
Probab=19.87 E-value=40 Score=23.81 Aligned_cols=37 Identities=30% Similarity=0.405 Sum_probs=25.8
Q ss_pred HHHHHHcCCCCCcccccceeecccccccchhhHHHHHHHHHHHHhhhcc
Q 028624 76 LEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVV 124 (206)
Q Consensus 76 l~Elk~aGi~~k~A~tiGI~VD~RRkn~S~Esl~~Nv~rLk~y~sklil 124 (206)
.++|.+.|.. -..|+|+||+-|.+ .+.|++|.+..-+
T Consensus 58 ~~~~~~~~~~---v~~v~isiDp~~Dt---------p~~l~~y~~~~~~ 94 (172)
T d1xzoa1 58 QKKLKAENID---VRIISFSVDPENDK---------PKQLKKFAANYPL 94 (172)
T ss_dssp HHHHHHTTCC---CEEEEEESCTTTCC---------HHHHHHHHTTSCC
T ss_pred hhhhcccccc---ccccccccccccch---------HHHHHHHHHHhcc
Confidence 3566666754 36899999997764 2458889887643
No 6
>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=18.96 E-value=21 Score=29.30 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=21.5
Q ss_pred HHHHHcCCCCCcccccceeeccc
Q 028624 77 EELKAAGIPKKLAPTIGVSVDHR 99 (206)
Q Consensus 77 ~Elk~aGi~~k~A~tiGI~VD~R 99 (206)
.|++++||+..+|+.+.|.-|+|
T Consensus 133 ~E~ra~Gin~~~aPv~Dv~~~p~ 155 (388)
T d1x38a1 133 LEVRATGIQYAFAPCIAVCRDPR 155 (388)
T ss_dssp HHHHHTTCCEECCCBCCCCSCTT
T ss_pred HHHHhcCCccccCCccccccccc
Confidence 58999999999999999999987
No 7
>d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal domain {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=15.86 E-value=23 Score=23.35 Aligned_cols=10 Identities=20% Similarity=0.697 Sum_probs=8.8
Q ss_pred cccccceeec
Q 028624 88 LAPTIGVSVD 97 (206)
Q Consensus 88 ~A~tiGI~VD 97 (206)
.|+++||.||
T Consensus 61 Ta~SmGi~Ve 70 (70)
T d1vqoi1 61 TCTSLGVTIE 70 (70)
T ss_dssp TSTTTTEEEC
T ss_pred hhhcceEEeC
Confidence 6899999987
No 8
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]}
Probab=14.48 E-value=27 Score=26.63 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHH-------hhhccccCc
Q 028624 106 EGLQSNVQRLKTYK-------AKLVVFPRR 128 (206)
Q Consensus 106 Esl~~Nv~rLk~y~-------sklilfPrk 128 (206)
|+.+.|++|+.++. ..||+||--
T Consensus 18 ~~~~~~l~r~~~li~~A~~~gadlvvfPE~ 47 (303)
T d1uf5a_ 18 ETREQVVVRLLDMLTKAASRGANFIVFPEL 47 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEEECCTT
T ss_pred cCHHHHHHHHHHHHHHHHHCCCcEEEcCCC
Confidence 56789999998885 478999973
No 9
>d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]}
Probab=13.66 E-value=30 Score=28.09 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.8
Q ss_pred HHHHHHcCCCCCcccccceeeccc
Q 028624 76 LEELKAAGIPKKLAPTIGVSVDHR 99 (206)
Q Consensus 76 l~Elk~aGi~~k~A~tiGI~VD~R 99 (206)
=.||++.||+..+|+.+.|.-|++
T Consensus 103 ~~el~~~Gin~~~aPv~Dv~~~~~ 126 (330)
T d1tr9a_ 103 AAELIAHDVDLSFAPVLDMGFACK 126 (330)
T ss_dssp HHHHHTTTCCEECCCBCCCCSCST
T ss_pred HHHHHHhCCCcccchhcccccccc
Confidence 378999999999999999977654
No 10
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=12.97 E-value=44 Score=24.97 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHh-------hhccccC
Q 028624 107 GLQSNVQRLKTYKA-------KLVVFPR 127 (206)
Q Consensus 107 sl~~Nv~rLk~y~s-------klilfPr 127 (206)
.++.|++++.+|.. .|||||-
T Consensus 15 d~e~nl~~i~~~i~~A~~~gadlvvfPE 42 (262)
T d1j31a_ 15 ELDKNYSKAEKLIKEASKEGAKLVVLPE 42 (262)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEECCT
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEcCC
Confidence 47899999999985 4999996
Done!