BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028625
(206 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SMP0|NFYC1_ARATH Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana
GN=NFYC1 PE=1 SV=1
Length = 234
Score = 269 bits (687), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 161/212 (75%), Positives = 167/212 (78%), Gaps = 30/212 (14%)
Query: 22 AATATAPFHHLIQQQQQQLQMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMIS 81
AA A +HHL+QQQQQQLQ+FW+YQRQEIEQ NDFKNHQLPLARIKKIMKADEDVRMIS
Sbjct: 26 AAGGGASYHHLLQQQQQQLQLFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMIS 85
Query: 82 -------------------------AEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDE 116
AEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDE
Sbjct: 86 AEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDE 145
Query: 117 IKDEAAGLGG--MVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQA 174
IKDEAA LGG +V TASGVPYYYPPMGQP AGPGGMMIGRPA+DP GVYVQPPSQA
Sbjct: 146 IKDEAAVLGGGMVVAPTASGVPYYYPPMGQP---AGPGGMMIGRPAMDPNGVYVQPPSQA 202
Query: 175 WQSVWQTPAGTGDDGSYGSGGSGGPANLDGQG 206
WQSVWQT GTGDD SYGSGGS G NLDGQG
Sbjct: 203 WQSVWQTSTGTGDDVSYGSGGSSGQGNLDGQG 234
>sp|Q9FMV5|NFYC4_ARATH Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana
GN=NFYC4 PE=2 SV=1
Length = 250
Score = 258 bits (658), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 161/239 (67%), Positives = 172/239 (71%), Gaps = 44/239 (18%)
Query: 9 SSSYPP--------QPPSAAAAATAT---APFHHLIQQQQQQLQMFWSYQRQEIEQANDF 57
+S YPP PP + +A+ T A +HHL+QQQQQQLQMFW+YQRQEIEQ NDF
Sbjct: 15 TSVYPPGSAVTTVIPPPPSGSASIVTGGGATYHHLLQQQQQQLQMFWTYQRQEIEQVNDF 74
Query: 58 KNHQLPLARIKKIMKADEDVRMIS-------------------------AEENKRRTLQK 92
KNHQLPLARIKKIMKADEDVRMIS AEENKRRTLQK
Sbjct: 75 KNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQK 134
Query: 93 NDIAAAITRTDIFDFLVDIVPRDEIKDE-----AAGLGGMVGATASGVPYYYPPMGQPTG 147
NDIAAAITRTDIFDFLVDIVPR+EIK+E A G GGMV ASGVPYYYPPMGQP
Sbjct: 135 NDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYYYPPMGQP-- 192
Query: 148 TAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTPAGTGDDGSYGSGGSGGPANLDGQG 206
A PGGMMIGRPA+DP+GVY QPPSQAWQSVWQ AG GDD SYGSGGS G NLD QG
Sbjct: 193 -AVPGGMMIGRPAMDPSGVYAQPPSQAWQSVWQNSAGGGDDVSYGSGGSSGHGNLDSQG 250
>sp|Q9ZVL3|NFYC3_ARATH Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana
GN=NFYC3 PE=2 SV=1
Length = 217
Score = 153 bits (387), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/165 (53%), Positives = 100/165 (60%), Gaps = 33/165 (20%)
Query: 43 FWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAE------------------- 83
FW Q +EIE+ DFKNH LPLARIKKIMKADEDVRMISAE
Sbjct: 52 FWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLR 111
Query: 84 ------ENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGATASGVPY 137
ENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR++++DE G G ATA+G PY
Sbjct: 112 SWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVGAEAATAAGYPY 171
Query: 138 YYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTP 182
Y P G T G GM++G P P Y+ Q +WQ P
Sbjct: 172 GYLPPG--TAPIGNPGMVMGNPGAYPPNPYMG------QPMWQQP 208
>sp|Q8LCG7|NFYC2_ARATH Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana
GN=NFYC2 PE=2 SV=2
Length = 199
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/126 (59%), Positives = 84/126 (66%), Gaps = 26/126 (20%)
Query: 40 LQMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISA----------------- 82
LQMFW+ Q QEIE DFKNH LPLARIKKIMKADEDVRMISA
Sbjct: 55 LQMFWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILEL 114
Query: 83 --------EENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGL-GGMVGATAS 133
EENKRRTLQKNDIAAAI+RTD+FDFLVDI+PRDE+K+E G+ G + +
Sbjct: 115 TLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKGTIPSVVG 174
Query: 134 GVPYYY 139
PYYY
Sbjct: 175 SPPYYY 180
>sp|Q8L4B2|NFYC9_ARATH Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana
GN=NFYC9 PE=2 SV=1
Length = 231
Score = 143 bits (361), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/145 (55%), Positives = 92/145 (63%), Gaps = 30/145 (20%)
Query: 43 FWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISA-------------------- 82
FW Q +EIE+ DFKNH LPLARIKKIMKADEDVRMISA
Sbjct: 62 FWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLR 121
Query: 83 -----EENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAG---LGGMVGATASG 134
EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR++++DE G G + A A+G
Sbjct: 122 SWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGSIPRGTVPEAAAAG 181
Query: 135 VPYYYPPMGQPTGTAGPGGMMIGRP 159
PY Y P G T G GM++G P
Sbjct: 182 YPYGYLPAG--TAPIGNPGMVMGNP 204
>sp|Q13952|NFYC_HUMAN Nuclear transcription factor Y subunit gamma OS=Homo sapiens
GN=NFYC PE=1 SV=3
Length = 458
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 75/139 (53%), Gaps = 28/139 (20%)
Query: 37 QQQLQMFWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAE----------- 83
QQ LQ FW +EI DF+ +LPLARIKKIMK DEDV+MISAE
Sbjct: 16 QQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQI 75
Query: 84 --------------ENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVG 129
+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K
Sbjct: 76 FITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQS 135
Query: 130 AT-ASGVPYYYPPMGQPTG 147
T A V YY+ QPT
Sbjct: 136 VTPAEPVQYYFTLAQQPTA 154
>sp|Q62725|NFYC_RAT Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus
GN=Nfyc PE=2 SV=1
Length = 335
Score = 107 bits (266), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 75/139 (53%), Gaps = 28/139 (20%)
Query: 37 QQQLQMFWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAE----------- 83
QQ LQ FW +EI DF+ +LPLARIKKIMK DEDV+MISAE
Sbjct: 16 QQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQI 75
Query: 84 --------------ENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVG 129
+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K
Sbjct: 76 FITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQS 135
Query: 130 AT-ASGVPYYYPPMGQPTG 147
T A V YY+ QPT
Sbjct: 136 VTPAEPVQYYFTLAQQPTA 154
>sp|P70353|NFYC_MOUSE Nuclear transcription factor Y subunit gamma OS=Mus musculus
GN=Nfyc PE=2 SV=2
Length = 335
Score = 107 bits (266), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 75/139 (53%), Gaps = 28/139 (20%)
Query: 37 QQQLQMFWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAE----------- 83
QQ LQ FW +EI DF+ +LPLARIKKIMK DEDV+MISAE
Sbjct: 16 QQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQI 75
Query: 84 --------------ENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVG 129
+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K
Sbjct: 76 FITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQS 135
Query: 130 AT-ASGVPYYYPPMGQPTG 147
T A V YY+ QPT
Sbjct: 136 VTPAEPVQYYFTLAQQPTA 154
>sp|Q5E9X1|NFYC_BOVIN Nuclear transcription factor Y subunit gamma OS=Bos taurus GN=NFYC
PE=2 SV=1
Length = 335
Score = 107 bits (266), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 75/139 (53%), Gaps = 28/139 (20%)
Query: 37 QQQLQMFWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAE----------- 83
QQ LQ FW +EI DF+ +LPLARIKKIMK DEDV+MISAE
Sbjct: 16 QQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQI 75
Query: 84 --------------ENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVG 129
+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K
Sbjct: 76 FITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQS 135
Query: 130 AT-ASGVPYYYPPMGQPTG 147
T A V YY+ QPT
Sbjct: 136 VTPAEPVQYYFTLAQQPTA 154
>sp|Q9FGP7|NFYC6_ARATH Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana
GN=NFYC6 PE=2 SV=1
Length = 202
Score = 106 bits (265), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 93/176 (52%), Gaps = 50/176 (28%)
Query: 39 QLQMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMIS----------------- 81
QL+ +W +++E +DFKN QLPLARIKKIMKAD DV M+S
Sbjct: 35 QLRNYWI---EQMETVSDFKNRQLPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIVD 91
Query: 82 --------AEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDE-IKDEAAGLGGMVGATA 132
AEENKR TLQK+DI+ A+ + +DFL+D+VP+DE I G M
Sbjct: 92 LTMRSWLKAEENKRHTLQKSDISNAVASSFTYDFLLDVVPKDESIATADPGFVAMPHPDG 151
Query: 133 SGVP-YYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTPAGTGD 187
GVP YYYPP G+++G P V +G+Y PSQAW PA GD
Sbjct: 152 GGVPQYYYPP-----------GVVMGTPMVG-SGMYA--PSQAW------PAAAGD 187
>sp|Q5RA23|NFYC_PONAB Nuclear transcription factor Y subunit gamma OS=Pongo abelii
GN=NFYC PE=2 SV=1
Length = 335
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 74/137 (54%), Gaps = 28/137 (20%)
Query: 37 QQQLQMFWSYQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISAE----------- 83
QQ LQ FW +EI DF+ +LPLARIKKIMK DEDV+MISAE
Sbjct: 16 QQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQI 75
Query: 84 --------------ENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVG 129
+NKRRTLQ+NDIA AIT+ D FDFL+DIVPRDE+K
Sbjct: 76 FITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEDVRQS 135
Query: 130 AT-ASGVPYYYPPMGQP 145
T A V YY+ QP
Sbjct: 136 VTPAEPVQYYFTLAQQP 152
>sp|Q4PSE2|NFYC8_ARATH Nuclear transcription factor Y subunit C-8 OS=Arabidopsis thaliana
GN=NFYC8 PE=2 SV=1
Length = 187
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 92/187 (49%), Gaps = 42/187 (22%)
Query: 38 QQLQMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAE-------------- 83
+QL+ FWS +E+E DFKNH LP+ RIKKIMK D DV MI++E
Sbjct: 16 EQLKSFWS---KEMEGNLDFKNHDLPITRIKKIMKYDPDVTMIASEAPILLSKACEMFIM 72
Query: 84 -----------ENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGATA 132
E+KR TLQK+++ AA+ +T IFDFL+D E+K E+ A
Sbjct: 73 DLTMRSWLHAQESKRVTLQKSNVDAAVAQTVIFDFLLD--DDIEVKRESVA--------A 122
Query: 133 SGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYV-QPPSQAWQSVWQTPAGTGDDGSY 191
+ P PP+ P GM+IG P G++ QP QAW W + +G ++
Sbjct: 123 AADPVAMPPIDD---GELPPGMVIGTPVCCSLGIHQPQPQMQAWPGAWTSVSGEEEEARG 179
Query: 192 GSGGSGG 198
GG G
Sbjct: 180 KKGGDDG 186
>sp|Q557I1|NFYC_DICDI Nuclear transcription factor Y subunit gamma OS=Dictyostelium
discoideum GN=nfyc-1 PE=3 SV=1
Length = 684
Score = 92.8 bits (229), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/122 (40%), Positives = 72/122 (59%), Gaps = 26/122 (21%)
Query: 23 ATATAPFHHLIQQQ-QQQLQMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMIS 81
+ ++ F + +Q + +L FWS Q ++I + DFK H+LPLARIKKIMK+D+DV IS
Sbjct: 231 SNGSSSFQNQLQNHLENKLSSFWSSQLRDIHKTEDFKTHELPLARIKKIMKSDKDVNKIS 290
Query: 82 AEE-------------------------NKRRTLQKNDIAAAITRTDIFDFLVDIVPRDE 116
+E NKRRTLQ+ DI +++R + FDFL+D++PRDE
Sbjct: 291 SEAPILFAKACEILILEMTHRSWVHTEMNKRRTLQRTDIINSLSRCETFDFLIDMLPRDE 350
Query: 117 IK 118
IK
Sbjct: 351 IK 352
>sp|Q02516|HAP5_YEAST Transcriptional activator HAP5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP5 PE=1 SV=1
Length = 242
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 58/105 (55%), Gaps = 33/105 (31%)
Query: 43 FWSYQRQEIEQAN--------DFKNHQLPLARIKKIMKADEDVRMISAE----------- 83
+W EIE N DFK+H LP ARI+K+MK DEDV+MISAE
Sbjct: 133 YWQELINEIESTNEPGSEHQDDFKSHSLPFARIRKVMKTDEDVKMISAEAPIIFAKACEI 192
Query: 84 --------------ENKRRTLQKNDIAAAITRTDIFDFLVDIVPR 114
NKRRTLQK DIA A+ ++D+FDFL+D+VPR
Sbjct: 193 FITELTMRAWCVAERNKRRTLQKADIAEALQKSDMFDFLIDVVPR 237
>sp|Q9FGP8|NFYC7_ARATH Nuclear transcription factor Y subunit C-7 OS=Arabidopsis thaliana
GN=NFYC7 PE=2 SV=1
Length = 212
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 87/194 (44%), Gaps = 61/194 (31%)
Query: 39 QLQMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAE--------------- 83
Q++ +W Q + A D K+H PL RIKKIMK++ +V M++AE
Sbjct: 44 QMRNYWIAQ---MGNATDVKHHAFPLTRIKKIMKSNPEVNMVTAEAPVLISKACEMLILD 100
Query: 84 ----------ENKRRTLQ------KNDIAAAITRTDIFDFLVDIVPRDE--IKDEAAGLG 125
E R+TL+ ++DI+AA TR+ F FL D+VPRD + D+
Sbjct: 101 LTMRSWLHTVEGGRQTLKRSDTLTRSDISAATTRSFKFTFLGDVVPRDPSVVTDD----- 155
Query: 126 GMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPS-QAWQSVWQTPAG 184
P+ P G P G +IG P D GVY PP Q W +V G
Sbjct: 156 ---------------PVLHPDGEVLPPGTVIGYPVFDCNGVYASPPQMQEWPAV----PG 196
Query: 185 TGDDGSYGSGGSGG 198
G++ + GGS G
Sbjct: 197 DGEEAAGEIGGSSG 210
>sp|P79007|HAP5_SCHPO Transcriptional activator hap5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap5 PE=2 SV=1
Length = 415
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 88/182 (48%), Gaps = 50/182 (27%)
Query: 18 SAAAAATATAPFHHLIQ----QQQQQLQMFWSYQRQEIEQAND-FKNHQLPLARIKKIMK 72
+A+A +PF ++ Q Q L +W +E + K LPLARIKK+MK
Sbjct: 60 NASAPIEVASPFDNVTQGLVGSDAQALAEYWQKTIDTLEHDDQAVKTLHLPLARIKKVMK 119
Query: 73 ADEDVR--MISAE-------------------------ENKRRTLQKNDIAAAITRTDIF 105
D+DV+ MISAE +N+RRTLQ++DIA A+++++++
Sbjct: 120 TDDDVKNKMISAEAPFLFAKGSEIFIAELTMRAWLHAKKNQRRTLQRSDIANAVSKSEMY 179
Query: 106 DFLVDIVPRDEIKDEA------------AGLGGMVGA----TASGVPYYYPPMGQPTGTA 149
DFL+DI+ +D A A +GGM G T +G+P PM PTG+
Sbjct: 180 DFLIDIISKDNNNSRASSSQAHMSATQVAAMGGMNGLQPFPTQAGLPNQGFPM--PTGSQ 237
Query: 150 GP 151
P
Sbjct: 238 LP 239
>sp|Q9FGP6|NFYC5_ARATH Nuclear transcription factor Y subunit C-5 OS=Arabidopsis thaliana
GN=NFYC5 PE=2 SV=1
Length = 186
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 79/170 (46%), Gaps = 40/170 (23%)
Query: 35 QQQQQLQMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAE----------- 83
+ +QL+ FWS + +E + KNH+ P++RIK+IMK D DV MI+AE
Sbjct: 13 KDNEQLKSFWS---KGMEGDLNVKNHEFPISRIKRIMKFDPDVSMIAAEAPNLLSKACEM 69
Query: 84 --------------ENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVG 129
E+ R T++K+D+ A +++T IFDFL D VP+DE G V
Sbjct: 70 FVMDLTMRSWLHAQESNRLTIRKSDVDAVVSQTVIFDFLRDDVPKDE--------GEPVV 121
Query: 130 ATASGVPYYYPPMGQP--TGTAGPGGMMIGRPAVDPTGVYVQPPSQ--AW 175
A A V + P P G +IG P G++ P AW
Sbjct: 122 AAADPVDDVADHVAVPDLNNEELPPGTVIGTPVCYGLGIHAPHPQMPGAW 171
>sp|Q58CM8|NFYCA_ARATH Nuclear transcription factor Y subunit C-10 OS=Arabidopsis thaliana
GN=NFYC10 PE=2 SV=1
Length = 195
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 29/100 (29%)
Query: 40 LQMFWSYQRQEIEQANDFKNH-QLPLARIKKIMKADEDVRMISAE--------------- 83
L++FW+ QR EQ +F LPL+R++KI+K+D +V+ IS +
Sbjct: 48 LKVFWNNQR---EQLGNFAGQTHLPLSRVRKILKSDPEVKKISCDVPALFSKACEYFILE 104
Query: 84 ----------ENKRRTLQKNDIAAAITRTDIFDFLVDIVP 113
R T+++ DI A+ + +DFL+D VP
Sbjct: 105 VTLRAWMHTQSCTRETIRRCDIFQAVKNSGTYDFLIDRVP 144
>sp|Q9CQ36|DPOE4_MOUSE DNA polymerase epsilon subunit 4 OS=Mus musculus GN=Pole4 PE=3 SV=1
Length = 118
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 25/76 (32%)
Query: 58 KNHQLPLARIKKIMKADEDVRM-------------------------ISAEENKRRTLQK 92
+ +LPLAR+K ++KAD DV + A++ KR+TLQ+
Sbjct: 38 RLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQR 97
Query: 93 NDIAAAITRTDIFDFL 108
D+ AI D F FL
Sbjct: 98 RDLDNAIEAVDEFAFL 113
>sp|Q9NR33|DPOE4_HUMAN DNA polymerase epsilon subunit 4 OS=Homo sapiens GN=POLE4 PE=1 SV=2
Length = 117
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 25/76 (32%)
Query: 58 KNHQLPLARIKKIMKADEDVRM-------------------------ISAEENKRRTLQK 92
+ +LPLAR+K ++KAD DV + A++ KR+TLQ+
Sbjct: 37 RLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQR 96
Query: 93 NDIAAAITRTDIFDFL 108
D+ AI D F FL
Sbjct: 97 RDLDNAIEAVDEFAFL 112
>sp|A6QQ14|DPOE4_BOVIN DNA polymerase epsilon subunit 4 OS=Bos taurus GN=POLE4 PE=3 SV=1
Length = 116
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 25/76 (32%)
Query: 58 KNHQLPLARIKKIMKADEDVRM-------------------------ISAEENKRRTLQK 92
+ +LPLAR+K ++KAD DV + A++ KR+TLQ+
Sbjct: 36 RLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQR 95
Query: 93 NDIAAAITRTDIFDFL 108
D+ AI D F FL
Sbjct: 96 RDLDNAIEAVDEFAFL 111
>sp|Q6BX14|DPB3_DEBHA DNA polymerase epsilon subunit C OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB3 PE=3 SV=1
Length = 277
Score = 37.0 bits (84), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 25/78 (32%)
Query: 62 LPLARIKKIMKADEDV-------------------------RMISAEENKRRTLQKNDIA 96
LPL++IKKI K D D ++ A+ +KR+ LQ D +
Sbjct: 92 LPLSKIKKIFKMDPDYLAASQSAVYATGLATELFIQYFTEQSLVLAKMDKRKKLQYKDFS 151
Query: 97 AAITRTDIFDFLVDIVPR 114
A+ D +FL D VP+
Sbjct: 152 NAVASQDSLNFLSDTVPK 169
>sp|Q54DA1|NC2A_DICDI Dr1-associated corepressor homolog OS=Dictyostelium discoideum
GN=drap1 PE=3 SV=1
Length = 550
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 25/79 (31%)
Query: 61 QLPLARIKKIMKADEDVRMISA-------------------------EENKRRTLQKNDI 95
+ P+ARIKKIM+ DE+V I++ + K + + N +
Sbjct: 8 KFPMARIKKIMQKDEEVGKIASATPILISQCLELFMADLVMKTCKITQAKKGKVISVNHL 67
Query: 96 AAAITRTDIFDFLVDIVPR 114
I + FDFL +IV R
Sbjct: 68 KECIKQESTFDFLTEIVDR 86
>sp|C6Y4D0|YCGV_SCHPO Putative transcription factor C16C4.22 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC16C4.22 PE=3 SV=1
Length = 87
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 25/75 (33%)
Query: 62 LPLARIKKIMKADEDVRMIS-------------------------AEENKRRTLQKNDIA 96
LPL+R+K+I+K DEDV S A+ KR+ ++ D+
Sbjct: 10 LPLSRVKRIIKQDEDVHYCSNASALLISVATELFVEKLATEAYQLAKLQKRKGIRYRDVE 69
Query: 97 AAITRTDIFDFLVDI 111
+ + D F+FL D+
Sbjct: 70 DVVRKDDQFEFLSDL 84
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,017,039
Number of Sequences: 539616
Number of extensions: 4373022
Number of successful extensions: 24223
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 245
Number of HSP's that attempted gapping in prelim test: 21874
Number of HSP's gapped (non-prelim): 2254
length of query: 206
length of database: 191,569,459
effective HSP length: 112
effective length of query: 94
effective length of database: 131,132,467
effective search space: 12326451898
effective search space used: 12326451898
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)