BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028626
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3STY|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
pdb|3STY|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
Length = 267
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 9/168 (5%)
Query: 37 HFVMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEYXXXXXXX 96
HFV+VH A HGAWCW+K+ AL+ +SG+ VT LDL ++GI+ + +Y
Sbjct: 14 HFVLVHAAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLMEF 73
Query: 97 XXXXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVYVAADMSDRRTEDVKVLFPA-S 155
EK+ILVGH++GGL ++ A+ F KI AV+++ M + V A S
Sbjct: 74 MASLPANEKIILVGHALGGLAISKAMETFPE-KISVAVFLSGLMPGPNIDATTVCTKAGS 132
Query: 156 INQGAAQNGISPDMFELEYALGPDKFPTSIMVKKEYQRELYYHMSPVE 203
G N ++ Y GP PT+++ ++ YH+SP+E
Sbjct: 133 AVLGQLDNCVT-------YENGPTNPPTTLIAGPKFLATNVYHLSPIE 173
>pdb|3STX|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
pdb|3STX|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
Length = 267
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 9/168 (5%)
Query: 37 HFVMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEYXXXXXXX 96
HFV+VH A HGAWCW+K+ AL+ +SG+ VT LDL ++GI+ + +Y
Sbjct: 14 HFVLVHTAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLMEF 73
Query: 97 XXXXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVYVAADMSDRRTEDVKVLFPA-S 155
EK+ILVGH++GGL ++ A+ F KI AV+++ M + V A S
Sbjct: 74 MASLPANEKIILVGHALGGLAISKAMETFPE-KISVAVFLSGLMPGPNIDATTVCTKAGS 132
Query: 156 INQGAAQNGISPDMFELEYALGPDKFPTSIMVKKEYQRELYYHMSPVE 203
G N ++ Y GP PT+++ ++ YH+SP+E
Sbjct: 133 AVLGQLDNCVT-------YENGPTNPPTTLIAGPKFLATNVYHLSPIE 173
>pdb|3STT|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STT|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STU|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STU|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STV|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STV|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STW|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
pdb|3STW|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
Length = 267
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 9/168 (5%)
Query: 37 HFVMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEYXXXXXXX 96
HFV+VH A HGAWCW+K+ AL+ +SG+ VT LDL ++GI+ + +Y
Sbjct: 14 HFVLVHTAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLMEF 73
Query: 97 XXXXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVYVAADMSDRRTEDVKVLFPA-S 155
EK+ILVGH++GGL ++ A+ F KI AV+++ M + V A S
Sbjct: 74 MASLPANEKIILVGHALGGLAISKAMETFPE-KISVAVFLSGLMPGPNIDATTVCTKAGS 132
Query: 156 INQGAAQNGISPDMFELEYALGPDKFPTSIMVKKEYQRELYYHMSPVE 203
G N ++ Y GP PT+++ ++ YH+SP+E
Sbjct: 133 AVLGQLDNCVT-------YENGPTNPPTTLIAGPKFLATNVYHLSPIE 173
>pdb|1Y7H|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|C Chain C, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|D Chain D, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|E Chain E, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|F Chain F, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|G Chain G, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|H Chain H, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
Length = 268
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 37 HFVMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEYXXXXXXX 96
HFV+VHGA HG W W+K++ LLE +G+KVT LDL ++G D + TL +Y
Sbjct: 6 HFVLVHGACHGGWSWYKLKPLLEAAGHKVTALDLAASGTDLRKIEELRTLYDYTLPLXEL 65
Query: 97 XXXXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVYVAADMSD 142
EKVILVGHS+GG N+ A ++ KI+ AV++AA D
Sbjct: 66 XESLSADEKVILVGHSLGGXNLGLAXEKYP-QKIYAAVFLAAFXPD 110
>pdb|1XKL|A Chain A, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|B Chain B, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|C Chain C, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|D Chain D, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
Length = 273
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 37 HFVMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEYXXXXXXX 96
HFV+VHGA HG W W+K++ LLE +G+KVT LDL ++G D + TL +Y
Sbjct: 6 HFVLVHGACHGGWSWYKLKPLLEAAGHKVTALDLAASGTDLRKIEELRTLYDYTLPLXEL 65
Query: 97 XXXXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVYVAADMSD 142
EKVILVGHS+GG N+ A ++ KI+ AV++AA D
Sbjct: 66 XESLSADEKVILVGHSLGGXNLGLAXEKYPQ-KIYAAVFLAAFXPD 110
>pdb|2WFL|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 37 HFVMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEYXXXXXXX 96
HFV+VHG GAW W+K++ LLE++G+KVT +DL++AGI+ + + T +Y
Sbjct: 12 HFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPLMEV 71
Query: 97 XXXXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVYVAADMSD 142
EKV+L+GHS GG+++ A+ + KI AV+++A M D
Sbjct: 72 MASIPPDEKVVLLGHSFGGMSLGLAMETYP-EKISVAVFMSAMMPD 116
>pdb|2WFL|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 37 HFVMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEYXXXXXXX 96
HFV+VHG GAW W+K++ LLE++G+KVT +DL++AGI+ + + T +Y
Sbjct: 12 HFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPLMEV 71
Query: 97 XXXXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVYVAADMSD 142
EKV+L+GHS GG+++ A+ + KI AV+++A M D
Sbjct: 72 MASIPPDEKVVLLGHSFGGMSLGLAMETYP-EKISVAVFMSAMMPD 116
>pdb|3GZJ|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
Length = 258
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 37 HFVMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEYXXXXXXX 96
HFV+VHG GAW W+K++ LLE++G+KVT +DL++AGI+ + + T +Y
Sbjct: 6 HFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPLMEV 65
Query: 97 XXXXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVYVAADMSD 142
EKV+L+GHS GG+++ A+ + KI AV+++A M D
Sbjct: 66 MASIPPDEKVVLLGHSFGGMSLGLAMETYP-EKISVAVFMSAMMPD 110
>pdb|2WFM|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
Length = 264
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 37 HFVMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEYXXXXXXX 96
HFV+VHG GAW W+K++ LLE++G+KVT +DL++AGI+ + + T +Y
Sbjct: 12 HFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPLMEV 71
Query: 97 XXXXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVYVAADMSD 142
EKV+L+GHS GG+++ A+ + KI AV+++A M D
Sbjct: 72 MASIPPDEKVVLLGHSFGGMSLGLAMETYP-EKISVAVFMSAMMPD 116
>pdb|3DQZ|A Chain A, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|B Chain B, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|C Chain C, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|D Chain D, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
Length = 258
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 37 HFVMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEYXXXXXXX 96
HFV+VH A HGAW W+K++ LLE++G++VT ++L ++GID V T++EY
Sbjct: 6 HFVLVHNAYHGAWIWYKLKPLLESAGHRVTAVELAASGIDPRPIQAVETVDEYSKPLIET 65
Query: 97 XXXXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVYVAADMSD 142
E+VILVG S GG+N+ A + F KI V++ A + D
Sbjct: 66 LKSLPENEEVILVGFSFGGINIALAADIFP-AKIKVLVFLNAFLPD 110
>pdb|2G4L|A Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
Length = 257
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 35 MSHFVMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEYXXXXX 94
+HFV++H HGAW W K++ LLE G+KVT LDL ++G+D + + +EY
Sbjct: 3 FAHFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLL 62
Query: 95 XXXXXXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVYVAADMSD 142
EKVILVG S GGLN+ A +++ KI AV+ + + D
Sbjct: 63 TFLEALPPGEKVILVGESCGGLNIAIAADKY-XEKIAAAVFHNSVLPD 109
>pdb|1YAS|A Chain A, Hydroxynitrile Lyase Complexed With Histidine
pdb|7YAS|A Chain A, Hydroxynitrile Lyase, Low Temperature Native Structure
pdb|2YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis Complexed
With Rhodanide
pdb|3YAS|A Chain A, Hydroxynitrile Lyase Complexed With Acetone
pdb|4YAS|A Chain A, Hydroxynitrile Lyase Complexed With Chloralhydrate
pdb|5YAS|A Chain A, Hydroxynitrile Lyase Complexed With Hexafluoroacetone
pdb|6YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis, Room
Temperature Structure
pdb|1QJ4|A Chain A, Hydroxynitrile-lyase From Hevea Brasiliensis At Atomic
Resolution
pdb|1SC9|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With The Natural Substrate Acetone Cyanohydrin
pdb|3C6X|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Y|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Z|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C70|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
Length = 257
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 35 MSHFVMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEYXXXXX 94
+HFV++H HGAW W K++ LLE G+KVT LDL ++G+D + + +EY
Sbjct: 3 FAHFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLL 62
Query: 95 XXXXXXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVYVAADMSD 142
EKVILVG S GGLN+ A +++ KI AV+ + + D
Sbjct: 63 TFLEALPPGEKVILVGESCGGLNIAIAADKYC-EKIAAAVFHNSVLPD 109
>pdb|1YB6|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With Mandelonitrile
pdb|1YB7|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With 2,3- Dimethyl-2-Hydroxy-Butyronitrile
Length = 256
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 35 MSHFVMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEYXXXXX 94
+HFV++H HGAW W K++ LLE G+KVT LDL ++G+D + + +EY
Sbjct: 2 FAHFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLL 61
Query: 95 XXXXXXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVYVAADMSD 142
EKVILVG S GGLN+ A +++ KI AV+ + + D
Sbjct: 62 TFLEALPPGEKVILVGESCGGLNIAIAADKYC-EKIAAAVFHNSVLPD 108
>pdb|1SCI|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis
pdb|1SCK|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetone
pdb|1SCQ|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetonecyanohydrin
Length = 257
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 35 MSHFVMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEYXXXXX 94
+HFV++H HGAW W K++ LLE G+KVT LDL ++G+D + + +EY
Sbjct: 3 FAHFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLL 62
Query: 95 XXXXXXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVYVAADMSD 142
EKVILVG S GGLN+ A +++ KI AV+ + + D
Sbjct: 63 TFLEALPPGEKVILVGESCGGLNIAIAADKYC-EKIAAAVFHNSVLPD 109
>pdb|1EB8|A Chain A, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB8|B Chain B, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB9|A Chain A, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB9|B Chain B, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
Length = 262
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 30 IHSSMMSHFVMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEY 89
I + +HFV++H HGAW W K++ LE +G+KVT LD+ ++GID + + +EY
Sbjct: 2 ISKMVTAHFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEY 61
Query: 90 XXXXXXXXXXXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVY 135
EKVI+VG S GLN+ A +R+ KI V+
Sbjct: 62 SEPLLTFLEKLPQGEKVIIVGESCAGLNIAIAADRY-VDKIAAGVF 106
>pdb|1DWO|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWO|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWP|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta At 2.2 Angstrom Resolution
pdb|1DWP|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta At 2.2 Angstrom Resolution
Length = 262
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 30 IHSSMMSHFVMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEY 89
I + +HFV++H HGAW W K++ LE +G+KVT LD+ ++GID + + +EY
Sbjct: 2 ISKMVTAHFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEY 61
Query: 90 XXXXXXXXXXXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVY 135
EKVI+VG S GLN+ A +R+ KI V+
Sbjct: 62 SEPLLTFLEKLPQGEKVIIVGESCAGLNIAIAADRY-VDKIAAGVF 106
>pdb|1DWQ|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWQ|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
Length = 262
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 54/96 (56%)
Query: 30 IHSSMMSHFVMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEY 89
I + +HFV++H HGAW W K++ LE +G+KVT LD+ ++GID + + +EY
Sbjct: 2 ISKMVTAHFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEY 61
Query: 90 XXXXXXXXXXXXXXEKVILVGHSIGGLNVTDAINRF 125
EKVI+VG S GLN+ A +R+
Sbjct: 62 SEPLLTFLEKLPQGEKVIIVGESXAGLNIAIAADRY 97
>pdb|3RKT|A Chain A, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|B Chain B, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|C Chain C, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|D Chain D, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|E Chain E, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|F Chain F, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|G Chain G, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|H Chain H, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
Length = 258
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 34 MMSHFVMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEYXXXX 93
+ +HFV++H HGAW W K++ LE +G+KVT LD+ ++GID + + +EY
Sbjct: 2 VTAHFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPL 61
Query: 94 XXXXXXXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVYVAADMSD 142
EKVI+VG S GLN+ A +R+ KI V+ + + D
Sbjct: 62 LTFLEKLPQGEKVIIVGESCAGLNIAIAADRY-VDKIAAGVFHNSLLPD 109
>pdb|3RKS|A Chain A, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|B Chain B, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|C Chain C, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|D Chain D, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
Length = 258
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 53/92 (57%)
Query: 34 MMSHFVMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEYXXXX 93
+ +HFV++H HGAW W K++ LE +G+KVT LD+ ++GID + + +EY
Sbjct: 2 VTAHFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPL 61
Query: 94 XXXXXXXXXXEKVILVGHSIGGLNVTDAINRF 125
EKVI+VG S GLN+ A +R+
Sbjct: 62 LTFLEKLPQGEKVIIVGESCAGLNIAIAADRY 93
>pdb|1E89|A Chain A, On The Mechanism Of Cyanogenesis Catalyzed By
Hydroxynitrile Lyase From Manihot Esculenta. Crystal
Structure Of Active Site Mutant Ser80ala In Complex With
Acetone Cyanohydrin
pdb|1E89|B Chain B, On The Mechanism Of Cyanogenesis Catalyzed By
Hydroxynitrile Lyase From Manihot Esculenta. Crystal
Structure Of Active Site Mutant Ser80ala In Complex With
Acetone Cyanohydrin
pdb|1E8D|A Chain A, Mechanistic Aspects Of Cyanogenesis From Active Site
Mutant Ser80ala Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Acetone Cyanohydrin
pdb|1E8D|B Chain B, Mechanistic Aspects Of Cyanogenesis From Active Site
Mutant Ser80ala Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Acetone Cyanohydrin
Length = 262
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 54/96 (56%)
Query: 30 IHSSMMSHFVMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEY 89
I + +HFV++H HGAW W K++ LE +G+KVT LD+ ++GID + + +EY
Sbjct: 2 ISKMVTAHFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEY 61
Query: 90 XXXXXXXXXXXXXXEKVILVGHSIGGLNVTDAINRF 125
EKVI+VG + GLN+ A +R+
Sbjct: 62 SEPLLTFLEKLPQGEKVIIVGEACAGLNIAIAADRY 97
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 39 VMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEYXXXXXXXXX 98
V++HG W + A L +GY+V D G + P T + + +
Sbjct: 28 VLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFG-QSSQPTTGYDYDTFAADLNTVLE 86
Query: 99 XXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVYVAA 138
+ V LVG S+G V ++ +G +I ++A+
Sbjct: 87 TLDLQDAV-LVGFSMGTGEVARYVSSYGTARIAAVAFLAS 125
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 39 VMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEYXXXXXXXXX 98
V++HG W + A L +GY+V D G + P T + + +
Sbjct: 27 VLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFG-QSSQPTTGYDYDTFAADLNTVLE 85
Query: 99 XXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVYVAA 138
+ V LVG S+G V ++ +G +I ++A+
Sbjct: 86 TLDLQDAV-LVGFSMGTGEVARYVSSYGTARIAKVAFLAS 124
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 39 VMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEYXXXXXXXXX 98
V++HG W + A L +GY+V D G + P T + + +
Sbjct: 27 VLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFG-QSSQPTTGYDYDTFAADLNTVLE 85
Query: 99 XXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVYVAA 138
+ V LVG S+G V ++ +G +I ++A+
Sbjct: 86 TLDLQDAV-LVGFSMGTGEVARYVSSYGTARIAKVAFLAS 124
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 39 VMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEYXXXXXXXXX 98
V++HG W + A L +GY+V D G + P T + + +
Sbjct: 27 VLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFG-QSSQPTTGYDYDTFAADLNTVLE 85
Query: 99 XXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVYVAA 138
+ V LVG S G V ++ +G +I ++A+
Sbjct: 86 TLDLQDAV-LVGFSTGTGEVARYVSSYGTARIAKVAFLAS 124
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 106 VILVGHSIGGLNVTDAINRFGYGKIHTAVYVAA 138
V LV HS+GG + + R G G++ +AV ++A
Sbjct: 88 VTLVAHSMGGGELARYVGRHGTGRLRSAVLLSA 120
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 39 VMVHGASHGAWCW-FKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEYXXXXXXXX 97
V++HG W ++V AL+E +GY+V D G + P + + +
Sbjct: 31 VLIHGWPLSGRSWEYQVPALVE-AGYRVITYDRRGFG-KSSQPWEGYEYDTFTSDLHQLL 88
Query: 98 XXXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVYVAA 138
+ V LVG S GG V I+ +G +I V+ A
Sbjct: 89 EQLEL-QNVTLVGFSXGGGEVARYISTYGTDRIEKVVFAGA 128
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 15/144 (10%)
Query: 39 VMVHGASHGAWCWFKVRALLETSGYKVTCLDLTSAGIDRTDPNTVFTLEEYXXXXXXXXX 98
V++HG W + L GY+V D G + NT + + +
Sbjct: 27 VLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFG-GSSKVNTGYDYDTFAADLHTVLE 85
Query: 99 XXXXXEKVILVGHSIGGLNVTDAINRFGYGKIHTAVYVAADMSDRRTEDVKVLFPASINQ 158
+ V+LVG S+G + + R+G+ ++ ++A+ L P + +
Sbjct: 86 TLDLRD-VVLVGFSMGTGELARYVARYGHERVAKLAFLAS------------LEPFLVQR 132
Query: 159 GAAQNGISPDMFE-LEYALGPDKF 181
G+ ++F+ +E A D+F
Sbjct: 133 DDNPEGVPQEVFDGIEAAAKGDRF 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,914,771
Number of Sequences: 62578
Number of extensions: 211745
Number of successful extensions: 593
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 566
Number of HSP's gapped (non-prelim): 27
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)