BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028627
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 125 CNHSMCMRCYRNWR-ARSQSCPFCR 148
C H MC C +W+ + Q CPFCR
Sbjct: 352 CGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 125 CNHSMCMRCYRNWR-ARSQSCPFCR 148
C H MC C +W+ + Q CPFCR
Sbjct: 352 CGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 125 CNHSMCMRCYRNWR-ARSQSCPFCR 148
C H MC C +W+ + Q CPFCR
Sbjct: 350 CGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 125 CNHSMCMRCYRNWR-ARSQSCPFCR 148
C H MC C +W+ + Q CPFCR
Sbjct: 350 CGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 33.9 bits (76), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 125 CNHSMCMRCYRNWR-ARSQSCPFCRDSLR 152
C H MC C +W+ + Q CPFCR ++
Sbjct: 45 CGHLMCTSCLTSWQESEGQGCPFCRCEIK 73
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 33.1 bits (74), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 125 CNHSMCMRCYRNWR-ARSQSCPFCRDSLR 152
C H MC C +W+ + Q CPFCR ++
Sbjct: 42 CGHLMCTSCLTSWQESEGQGCPFCRCEIK 70
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 121 VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN 155
+LP C HS C +C W R ++CP CR + N
Sbjct: 29 ILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 121 VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 152
V +C HS C C W R CP CR ++
Sbjct: 67 VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 121 VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 152
V +C HS C C W R CP CR ++
Sbjct: 78 VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 109
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 121 VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 152
V +C HS C C W R CP CR ++
Sbjct: 67 VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 125 CNHSMCMRCYRNWR-ARSQSCPFCR 148
C H MC C W+ + Q CPFCR
Sbjct: 356 CGHLMCTSCLTAWQESDGQGCPFCR 380
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 125 CNHSMCMRCYRNWR-ARSQSCPFCRDSLR 152
C H MC C W+ + Q CPFCR ++
Sbjct: 44 CGHLMCTSCLTAWQESDGQGCPFCRCEIK 72
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 30.0 bits (66), Expect = 0.88, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 122 LPDCNHSMCMRCYRNWRARSQSCPFCR 148
LP C H C W +CP CR
Sbjct: 24 LPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 125 CNHSMCMRCYRNWRAR-SQSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 171
CNH++C C+++ + S CPFCR RRV+S + +T + +V++
Sbjct: 33 CNHTLCKPCFQSTVEKASLCCPFCR---RRVSSWTRY-HTRRNSLVNV 76
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 29.3 bits (64), Expect = 1.6, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 121 VLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 151
V +C H C +C R+ + +CP CR +
Sbjct: 24 VSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 125 CNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS 156
CNH C W + SCP CR SL N+
Sbjct: 36 CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin-
Protein Ligase Uhrf1
Length = 124
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 125 CNHSMCMRCY-RNWRARSQSCPFCRDSLRR 153
C H++C C R++RA+ SCP CR L R
Sbjct: 70 CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 124 DCNHSMCMRCYRNWRARSQS---CPFCRDSLRR 153
DC H+ C++C S CP C+ S+R+
Sbjct: 37 DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69
>pdb|3O5W|B Chain B, Binding Of Kinetin In The Active Site Of Mistletoe Lectin
I
Length = 263
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 121 VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLAS-----IS 175
+ P N S C+ C R+ S S S +SG W++T+E I++L + ++
Sbjct: 182 IRPKQNQSQCLTCGRD----SVSTVINIVSCSAGSSGQRWVFTNEGAILNLKNGLAMDVA 237
Query: 176 REN--LKRLFMY 185
+ N L+R+ +Y
Sbjct: 238 QANPSLQRIIIY 249
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 121 VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENL 179
++P C+H+ C C R + + CP C + V DL D++V + +R +L
Sbjct: 37 IIPQCSHNYCSLCIRKFLSYKTQCPTCCVT---VTEPDLKNNRILDELVKSLNFARNHL 92
>pdb|2CT7|A Chain A, Solution Structure Of The Ibr Domain Of The Ring Finger
Protein 31 Protein
Length = 86
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 11/43 (25%)
Query: 121 VLPDCNHSMCMRCYRNW----RARSQSCPFCRD--SLRRVNSG 157
P C+ + C+RC R W R RS C D + +R+NSG
Sbjct: 45 TCPQCHQTFCVRCKRQWEEQHRGRS-----CEDFQNWKRMNSG 82
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 121 VLPDCNHSMCMRCY-RNWRARSQSCPFCRDSLRR 153
V +C H++C C R+++A+ SCP CR L +
Sbjct: 92 VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 121 VLPDCNHSMCMRCYRNWRARSQSCPFCR 148
VLP CNH +C W +++CP CR
Sbjct: 41 VLP-CNHEFHAKCVDKWLKANRTCPICR 67
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 121 VLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 151
V +C H C +C R+ + +CP CR +
Sbjct: 31 VSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 125 CNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTS 164
C H++C + A+ QSCP CR + V L +TS
Sbjct: 36 CGHTVCCE---SCAAQLQSCPVCRSRVEHVQHVYLPTHTS 72
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 125 CNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDD 167
C H+ C C W ++ +CP C+ + V ++T E D
Sbjct: 24 CLHAFCYVCITRWIRQNPTCPLCKVPVESV------VHTIESD 60
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 121 VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153
V +C H C +C R+ + +CP CR +
Sbjct: 28 VSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 121 VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153
V +C H C +C R+ + +CP CR +
Sbjct: 93 VSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 121 VLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 151
V +C H C +C R+ + +CP CR +
Sbjct: 36 VSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|1TV7|A Chain A, Structure Of The S-adenosylmethionine Dependent Enzyme
Moaa
pdb|1TV7|B Chain B, Structure Of The S-adenosylmethionine Dependent Enzyme
Moaa
pdb|1TV8|A Chain A, Structure Of Moaa In Complex With S-Adenosylmethionine
pdb|1TV8|B Chain B, Structure Of Moaa In Complex With S-Adenosylmethionine
pdb|2FB3|A Chain A, Structure Of Moaa In Complex With 5'-Gtp
pdb|2FB3|B Chain B, Structure Of Moaa In Complex With 5'-Gtp
Length = 340
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 44 TMCTRERKASIKEFYGVIFPSLLQ------LQRGITDVEDKKQ 80
+ CTR R +S +FYG +F ++ ++ G+TD E K+Q
Sbjct: 262 STCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQ 304
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,691,939
Number of Sequences: 62578
Number of extensions: 134156
Number of successful extensions: 442
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 411
Number of HSP's gapped (non-prelim): 42
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)