BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028627
(206 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZM74|RN141_CHICK RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1
Length = 230
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 107 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 163
E+EC IC++ ++LP C HS C +C W R +SCP CR + +GD W+ +
Sbjct: 152 EDECCICMDGRVDLILP-CAHSFCQKCIDKWSDRHRSCPVCRRQV--TGAGDSWVVSDAP 208
Query: 164 SEDDIV 169
+EDDI
Sbjct: 209 TEDDIA 214
>sp|Q2XNS1|RN141_CANFA RING finger protein 141 OS=Canis familiaris GN=RNF141 PE=2 SV=1
Length = 231
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 107 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 163
EEEC IC++ ++LP C HS C +C W R ++CP CR L+ + + W+ +
Sbjct: 153 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 209
Query: 164 SEDDIVD 170
+EDD+ +
Sbjct: 210 TEDDMAN 216
>sp|Q6IV57|RN141_RAT RING finger protein 141 OS=Rattus norvegicus GN=Rnf141 PE=2 SV=1
Length = 230
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 107 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 163
EEEC IC++ ++LP C HS C +C W R ++CP CR L+ + + W+ +
Sbjct: 152 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 208
Query: 164 SEDDIVD 170
+EDD+ +
Sbjct: 209 TEDDMAN 215
>sp|Q32L15|RN141_BOVIN RING finger protein 141 OS=Bos taurus GN=RNF141 PE=2 SV=1
Length = 230
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 107 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 163
EEEC IC++ ++LP C HS C +C W R ++CP CR L+ + + W+ +
Sbjct: 152 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 208
Query: 164 SEDDIVD 170
+EDD+ +
Sbjct: 209 TEDDMAN 215
>sp|Q99MB7|RN141_MOUSE RING finger protein 141 OS=Mus musculus GN=Rnf141 PE=2 SV=2
Length = 230
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 107 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 163
EEEC IC++ ++LP C HS C +C W R ++CP CR L+ + + W+ +
Sbjct: 152 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 208
Query: 164 SEDDIVD 170
+EDD+ +
Sbjct: 209 TEDDMAN 215
>sp|Q5R7K8|RN141_PONAB RING finger protein 141 OS=Pongo abelii GN=RNF141 PE=2 SV=1
Length = 230
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 107 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 163
EEEC IC++ ++LP C HS C +C W R ++CP CR L+ + + W+ +
Sbjct: 152 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 208
Query: 164 SEDDIVD 170
+EDD+ +
Sbjct: 209 TEDDMAN 215
>sp|Q8WVD5|RN141_HUMAN RING finger protein 141 OS=Homo sapiens GN=RNF141 PE=1 SV=1
Length = 230
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 107 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 163
EEEC IC++ ++LP C HS C +C W R ++CP CR L+ + + W+ +
Sbjct: 152 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 208
Query: 164 SEDDIVD 170
+EDD+ +
Sbjct: 209 TEDDMAN 215
>sp|Q6IV56|RN141_DANRE RING finger protein 141 OS=Danio rerio GN=rnf141 PE=2 SV=2
Length = 222
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 107 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSED 166
EEEC IC++ ++LP C HS C +C W +S++CP CR + N + W+ +
Sbjct: 144 EEECCICMDGKADLILP-CAHSFCQKCIDKWSGQSRNCPVCRIQVTAAN--ESWVMSDAP 200
Query: 167 DIVDLAS 173
D+A
Sbjct: 201 TGEDVAG 207
>sp|Q803C1|RNF8_DANRE E3 ubiquitin-protein ligase RNF8 OS=Danio rerio GN=rnf8 PE=2 SV=1
Length = 485
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 53 SIKEFYGVIFPSLLQLQRGITDVEDKKQKEI-CDAKYKKKGRMDK----GKLSEIDIERE 107
++KE VI L +G +V K KE+ + K+K + K +++E+ +E E
Sbjct: 332 ALKEHRKVI-EELKHAWQGFKEVLQAKDKELEVTKEEKEKAKAQKEEVVTQMTEV-LESE 389
Query: 108 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFC 147
+C IC E+ + V +C HS C C WR R CP C
Sbjct: 390 LQCSICSELFIEAVTLNCAHSFCQHCISEWRNRKDKCPMC 429
>sp|Q7ZX20|RNF8A_XENLA E3 ubiquitin-protein ligase RNF8-A OS=Xenopus laevis GN=rnf8-a PE=2
SV=1
Length = 540
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 12/148 (8%)
Query: 65 LLQLQRGITDVE---DKKQKEICDAKYKKKGRMDKGK--LSEID--IEREEECGICLEIC 117
+ +L R D E + K KE+ + K +K+ + + L+ ++ ++ E +C IC E
Sbjct: 330 MQELNRSKNDFEQIIEAKNKELQETKEEKEKVFAQKEEVLNHMNDVLDNELQCIICSEHF 389
Query: 118 CKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRE 177
+ V +C HS C C ++W+ R + CP CR + + L + D +VD S +
Sbjct: 390 IEAVTLNCAHSFCSYCIKSWKKRKEECPICRQEI-VTETRSLVLDNCIDSMVDKLSPEMK 448
Query: 178 NLKRLFMYIDKLPFITP---NPTLVSYD 202
N +R + +++ + NP LV D
Sbjct: 449 N-RRAALILERKEMVQAEESNPVLVVSD 475
>sp|Q13064|MKRN3_HUMAN Probable E3 ubiquitin-protein ligase makorin-3 OS=Homo sapiens
GN=MKRN3 PE=1 SV=1
Length = 507
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 16/68 (23%)
Query: 110 CGICLEICCK---------IVLPDCNHSMCMRCYRNWRARSQ-------SCPFCRDSLRR 153
CGIC+E+ + +L +CNHS C+RC R WR+ Q SCP CR +
Sbjct: 311 CGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKSCPQCRVTSEL 370
Query: 154 VNSGDLWI 161
V + W+
Sbjct: 371 VIPSEFWV 378
>sp|Q6NRG0|RNF8B_XENLA E3 ubiquitin-protein ligase RNF8-B OS=Xenopus laevis GN=rnf8-b PE=2
SV=1
Length = 532
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 18/170 (10%)
Query: 37 AYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKE-ICDAKYKKKGRMD 95
A A + T +E + +F +I +LQ E K++KE +C K + M+
Sbjct: 315 AQALQEHTQLMQELNRNKNDFEQIIQAKNKELQ------ETKEEKEKVCAQKEEVLNHMN 368
Query: 96 KGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN 155
++ E +C IC E + V +C HS C C ++WR R + CP CR +
Sbjct: 369 DV------LDNELQCIICSEHFIEAVTLNCAHSFCSYCIKSWRKRKEECPICRQEILS-E 421
Query: 156 SGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITP---NPTLVSYD 202
+ L + D +VD S +N +R + +++ + NP LV D
Sbjct: 422 TRSLVLDNCIDSMVDKLSPEMKN-RRAALILERKEMVQAEESNPVLVVSD 470
>sp|Q60764|MKRN3_MOUSE Probable E3 ubiquitin-protein ligase makorin-3 OS=Mus musculus
GN=Mkrn3 PE=2 SV=2
Length = 544
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 16/68 (23%)
Query: 110 CGICLEICCKIVLPD---------CNHSMCMRCYRNWRARSQ-------SCPFCRDSLRR 153
CGIC+E+ + P CNH+ C+RC R WR+ +Q SCP CR S
Sbjct: 347 CGICMEVVYEKADPSDRRFGILFSCNHTYCLRCIRRWRSATQFENRISKSCPQCRVSSGF 406
Query: 154 VNSGDLWI 161
V + W+
Sbjct: 407 VIPSEFWV 414
>sp|E0X9N4|C3H69_ARATH Zinc finger CCCH domain-containing protein 69 OS=Arabidopsis
thaliana GN=At3g63550 PE=3 SV=1
Length = 350
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 34/143 (23%)
Query: 76 EDKKQKEICDAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLP---------DCN 126
E ++ K++C+ K+K+ L + + +E EC +CLE P +C+
Sbjct: 172 EREEHKKVCEKKHKQ--------LEALKLSQEIECCVCLERVLSKATPAERKFGLLTECD 223
Query: 127 HSMCMRCYRNWRARSQS-----------CPFCRDSLRRVNSGDLWIYTSEDDIVDLASIS 175
H+ C+ C RNWR+ S S CP CR V +W +++ ++ ++
Sbjct: 224 HAFCIACIRNWRSSSPSTGMDVNSTLRACPICRKLSYFVVPSVIW-FSAPEEKKEIMDNY 282
Query: 176 RENLKRL----FMYID-KLPFIT 193
RE L+ + F + D PF T
Sbjct: 283 REKLRSIDCKHFSFGDGNCPFGT 305
>sp|Q9UHC7|MKRN1_HUMAN E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens GN=MKRN1 PE=1
SV=3
Length = 482
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 16/73 (21%)
Query: 110 CGICLEICCKI---------VLPDCNHSMCMRCYRNWRARSQ-------SCPFCRDSLRR 153
CGIC+E+ + +L +CNH+ C++C R WR+ Q SCP CR +
Sbjct: 281 CGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 340
Query: 154 VNSGDLWIYTSED 166
V + W+ E+
Sbjct: 341 VIPSEYWVEEKEE 353
>sp|Q9QXP6|MKRN1_MOUSE E3 ubiquitin-protein ligase makorin-1 OS=Mus musculus GN=Mkrn1 PE=2
SV=1
Length = 481
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query: 110 CGICLEICCKIVLP---------DCNHSMCMRCYRNWRARSQ-------SCPFCRDSLRR 153
CGIC+E+ + P +CNH+ C++C R WR+ Q SCP CR +
Sbjct: 281 CGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 340
Query: 154 VNSGDLWIYTSED 166
V + W+ E+
Sbjct: 341 VIPSEYWVEEKEE 353
>sp|Q9TT91|MKRN1_MACEU E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1
PE=2 SV=1
Length = 478
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query: 110 CGICLEICCKIVLP---------DCNHSMCMRCYRNWRARSQ-------SCPFCRDSLRR 153
CGIC+E+ + P +CNH+ C++C R WR+ Q SCP CR +
Sbjct: 277 CGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 336
Query: 154 VNSGDLWIYTSED 166
V + W+ E+
Sbjct: 337 VIPSEYWVEEKEE 349
>sp|Q8IYW5|RN168_HUMAN E3 ubiquitin-protein ligase RNF168 OS=Homo sapiens GN=RNF168 PE=1
SV=1
Length = 571
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 9/66 (13%)
Query: 109 ECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQ-SCPFCRDSLRRVNSGDLWI--YTSE 165
+CGIC+EI + V CNH++C C+++ ++ CPFCR RRV+S W +T
Sbjct: 15 QCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCR---RRVSS---WTRYHTRR 68
Query: 166 DDIVDL 171
+ +V++
Sbjct: 69 NSLVNV 74
>sp|B2RYR0|RN168_RAT E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus GN=Rnf168
PE=2 SV=1
Length = 564
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 109 ECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQ-SCPFCRDSLRRVNS 156
+CGIC+EI + V CNH++C C+++ ++ CPFCR RRV+S
Sbjct: 15 QCGICMEILVEPVTLPCNHTLCNPCFQSTVEKANLCCPFCR---RRVSS 60
>sp|Q80XJ2|RN168_MOUSE E3 ubiquitin-protein ligase RNF168 OS=Mus musculus GN=Rnf168 PE=2
SV=3
Length = 565
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 109 ECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQ-SCPFCRDSLRRVNS 156
+CGIC+EI + V CNH++C C+++ ++ CPFCR RRV+S
Sbjct: 15 QCGICMEILLEPVTLPCNHTLCNPCFQSTVEKANLCCPFCR---RRVSS 60
>sp|Q4SRI6|MKRN1_TETNG Probable E3 ubiquitin-protein ligase makorin-1 OS=Tetraodon
nigroviridis GN=mkrn1 PE=3 SV=1
Length = 372
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query: 110 CGICLEICCKI---------VLPDCNHSMCMRCYRNWRARSQ-------SCPFCRDSLRR 153
CG+C+E+ + +L +CNH C++C R WR+ Q SCP CR +
Sbjct: 226 CGVCMEVVFEKANPSERRFGILSNCNHCYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 285
Query: 154 VNSGDLWIYTSED 166
V + W+ ED
Sbjct: 286 VIPSEYWVEDKED 298
>sp|Q13434|MKRN4_HUMAN Putative E3 ubiquitin-protein ligase makorin-4 OS=Homo sapiens
GN=MKRN4P PE=5 SV=1
Length = 485
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query: 110 CGICLEICCKIVLPD---------CNHSMCMRCYRNWRARSQ-------SCPFCRDSLRR 153
CGIC+E+ + P+ CNH+ C++C R WR+ + SCP CR +
Sbjct: 316 CGICMEVVYEKANPNEHRFGILSNCNHTFCLKCIRKWRSAKEFESRIVKSCPQCRITSNF 375
Query: 154 VNSGDLWIYTSED 166
V + W+ E+
Sbjct: 376 VIPSEYWVEEKEE 388
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 104 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 151
I++ EC IC E + C H+ C C NW S+SCP CR L
Sbjct: 79 IKKTLECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKL 126
>sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2 OS=Homo
sapiens GN=LONRF2 PE=2 SV=3
Length = 754
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 17/115 (14%)
Query: 109 ECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR----------VNSGD 158
EC +C+ + + V C H+ C++C + CP C+D L V + +
Sbjct: 448 ECALCMRLLFEPVTTPCGHTFCLKCLERCLDHAPHCPLCKDKLSELLASRNFNITVLAEE 507
Query: 159 LWIYTSEDDIVDLASISRENLKRLF-------MYIDKLPFITPNPTLVSYDPRYR 206
L D++ D I E + L +++ + F T L ++PRYR
Sbjct: 508 LIFRYLPDELSDRKRIYDEEMSELSNLTRDVPIFVCAMAFPTVPCPLHVFEPRYR 562
>sp|Q6P256|CHFR_XENTR E3 ubiquitin-protein ligase CHFR OS=Xenopus tropicalis GN=chfr PE=2
SV=1
Length = 626
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 91 KGRMDKGKLSEIDIEREEE---CGICLEICCKIV-LPDCNHSMCMRCYRNWRARSQSCPF 146
KG D+ K + ++ EE C IC E+ V L C H+ C CY W RS CP
Sbjct: 245 KGASDESKTPSMKPDKMEETLTCIICQELLHDCVSLQPCMHTFCAACYSGWMERSSLCPT 304
Query: 147 CRDSLRRV 154
CR + R+
Sbjct: 305 CRCPVERI 312
>sp|Q6GLT5|MKRN1_XENLA Probable E3 ubiquitin-protein ligase makorin-1 OS=Xenopus laevis
GN=mkrn1 PE=2 SV=1
Length = 408
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query: 110 CGICLEICCKIVLP---------DCNHSMCMRCYRNWRARSQ-------SCPFCRDSLRR 153
CGIC+E+ + P +C+HS C++C R WR+ Q SCP CR +
Sbjct: 247 CGICMEVVYEKTNPSERRFGILSNCSHSYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 306
Query: 154 VNSGDLWIYTSED 166
+ + W+ E+
Sbjct: 307 IIPSEYWVEEKEE 319
>sp|Q5NU14|MKRN1_TAKRU Probable E3 ubiquitin-protein ligase makorin-1 OS=Takifugu rubripes
GN=mkrn1 PE=2 SV=1
Length = 429
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query: 110 CGICLEICCKI---------VLPDCNHSMCMRCYRNWRARSQ-------SCPFCRDSLRR 153
CG+C+E+ + +L +C+H C++C R WR+ Q SCP CR +
Sbjct: 226 CGVCMEVVFEKANPSERRFGILSNCSHCYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 285
Query: 154 VNSGDLWIYTSED 166
V + W+ ED
Sbjct: 286 VIPSEYWVEDKED 298
>sp|Q5D7I6|TRIM5_ALOSA Tripartite motif-containing protein 5 OS=Alouatta sara GN=TRIM5
PE=3 SV=1
Length = 551
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 102 IDIEREEECGICLEICCKIVLPDCNHSMCMRCY--RNWRARSQSCPFCRDSLRRVN 155
++I+ E C ICLE+ + + DC HS C C + +R +SCP CR S N
Sbjct: 7 VNIKEEVTCPICLELLTEPLSLDCGHSFCQACITANHKESRERSCPLCRVSYHSEN 62
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 71 GITDVEDKKQKEICDAKYKKKGRMDKGKLSEID--IEREEECGICLEICCKIVLPDCNHS 128
I +DK+ ++ + K K + + ++ LS ++ +E E +C IC E + V +C HS
Sbjct: 365 AIIQAKDKELEQTKEEKEKVQAQKEEV-LSHMNDVLENELQCIICSEYFVEAVTLNCAHS 423
Query: 129 MCMRCYRNWRARSQSCPFCRDSLR 152
C C W R CP CR ++
Sbjct: 424 FCSYCINEWMKRKVECPICRKDIK 447
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 42/94 (44%)
Query: 63 PSLLQLQRGITDVEDKKQKEICDAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVL 122
P + L R + + + Q++I + +++ + + + E + C IC +I + +
Sbjct: 1045 PGHIHLLRELEEEKSNTQRKIAHFESRRRYLTNLYEHIVLKAESHQICIICRDIIKQGFI 1104
Query: 123 PDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS 156
C H C C W S SCP C+ L + N+
Sbjct: 1105 TTCGHLYCSFCLEAWLKHSSSCPMCKTKLNKNNA 1138
>sp|Q9LZV8|ATL74_ARATH RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2
SV=1
Length = 159
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 109 ECGICLEICCKI----VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN 155
EC ICL VLP CNHS M C W SCP CR SL V+
Sbjct: 104 ECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIEVH 154
>sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2
SV=1
Length = 181
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 106 REEECGICL---EICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWI 161
+ EC ICL E K+ VLP CNH +RC W SCP CR SL + +
Sbjct: 110 KATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQPSPMAV 169
Query: 162 YTSEDDIV 169
++D+V
Sbjct: 170 SRRDEDMV 177
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 67 QLQRGITDVE---DKKQKEICDAKYKKKGRMDKGK---LSEID--IEREEECGICLEICC 118
+L R D E K KE+ K +K+ +M K LS ++ +E E +C IC E
Sbjct: 353 ELNRSKKDFEAIIQAKNKELEQTKEEKE-KMQAQKEEVLSHMNDVLENELQCIICSEYFI 411
Query: 119 KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 152
+ V +C HS C C W R CP CR ++
Sbjct: 412 EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 445
>sp|Q5R4I2|RNF8_PONAB E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1
Length = 486
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 104 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 152
+E E +C IC E + V +C HS C C W R CP CR ++
Sbjct: 398 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 446
>sp|P22682|CBL_MOUSE E3 ubiquitin-protein ligase CBL OS=Mus musculus GN=Cbl PE=1 SV=3
Length = 913
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 110 CGICLEICCKIVLPDCNHSMCMRCYRNWR-ARSQSCPFCRDSLR 152
C IC E + + C H MC C +W+ + Q CPFCR ++
Sbjct: 379 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 422
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 102 IDIEREEECGICLEICCKI----VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN 155
I +E+ +C +CL +LP C+H+ + C W + +CP CR SL N
Sbjct: 199 ISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSLSTSN 256
>sp|Q5FWP4|CHFR_XENLA E3 ubiquitin-protein ligase CHFR OS=Xenopus laevis GN=chfr PE=1
SV=1
Length = 625
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 92 GRMDKGKLSEIDIEREEE---CGICLEICCKIV-LPDCNHSMCMRCYRNWRARSQSCPFC 147
G D+ K + ++ EE C IC E+ V L C H+ C CY W RS CP C
Sbjct: 245 GASDESKTPSMKPDKMEETLTCIICQELLHDCVSLQPCMHTFCAACYSGWMERSSLCPTC 304
Query: 148 RDSLRRV 154
R + R+
Sbjct: 305 RCPVERI 311
>sp|Q8JFF3|MKRN1_SERQU Probable E3 ubiquitin-protein ligase makorin-1 OS=Seriola
quinqueradiata GN=mkrn1 PE=2 SV=1
Length = 435
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 16/73 (21%)
Query: 110 CGICLEICCKIVLP---------DCNHSMCMRCYRNWRARSQ-------SCPFCRDSLRR 153
CG+C+E+ + P +C+H C++C R WR+ Q SCP CR +
Sbjct: 228 CGVCMEVVFEKANPSERRFGILSNCSHCYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 287
Query: 154 VNSGDLWIYTSED 166
V + W+ +D
Sbjct: 288 VIPSEYWVEDKDD 300
>sp|Q5ZA07|C3H41_ORYSJ E3 ubiquitin-protein ligase makorin OS=Oryza sativa subsp. japonica
GN=MKRN PE=2 SV=1
Length = 368
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 30/119 (25%)
Query: 82 EICDAKYKKKGRMDKGKLSEIDIEREE--------ECGICLE-ICCKI--------VLPD 124
++C Y+ R + KL E + +R E EC +CL+ + K +L +
Sbjct: 180 KMCLHPYRPDEREEHTKLCEKNHKRLESLKRSQEIECSVCLDRVLSKPTAAERKFGLLSE 239
Query: 125 CNHSMCMRCYRNWRARS-----------QSCPFCRDSLRRVNSGDLWIYTSED--DIVD 170
C+H C+ C RNWR S ++CP CR V LW ++ E+ +I+D
Sbjct: 240 CDHPFCISCIRNWRNNSPTSGMDVNSALRACPICRKLSYYVIPSVLWYFSKEEKLEIID 298
>sp|Q65XV2|XB3_ORYSJ E3 ubiquitin-protein ligase XB3 OS=Oryza sativa subsp. japonica
GN=XB3 PE=1 SV=1
Length = 450
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 16/103 (15%)
Query: 68 LQRGITDVEDKKQKEICDA-KYK----KKGRMDKGKLSEIDIEREEECGICLEICCKIVL 122
L+ + + +++K+I + KY G + ++ E C IC + C I +
Sbjct: 276 LEAALMEANREREKKILNGTKYSLPSPSPGDDSADDDACSEVSDTELCCICFDQACTIEV 335
Query: 123 PDCNHSMCMRCY-----------RNWRARSQSCPFCRDSLRRV 154
DC H MC C S +CPFCR S+ R+
Sbjct: 336 QDCGHQMCAPCTLALCCHNKPNPTTLTPPSPACPFCRGSISRL 378
>sp|Q96EP1|CHFR_HUMAN E3 ubiquitin-protein ligase CHFR OS=Homo sapiens GN=CHFR PE=1 SV=2
Length = 664
Score = 40.4 bits (93), Expect = 0.009, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 104 IEREEECGICLEICCKIV-LPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 154
+E C IC ++ V L C H+ C CY W RS CP CR + R+
Sbjct: 298 MEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERI 349
>sp|Q8VC56|RNF8_MOUSE E3 ubiquitin-protein ligase RNF8 OS=Mus musculus GN=Rnf8 PE=1 SV=1
Length = 488
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 104 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR-RVNS 156
+E E +C IC E + V +C HS C C W R CP CR + R NS
Sbjct: 400 LENELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICRKDIESRTNS 453
>sp|Q4KLN8|RNF8_RAT E3 ubiquitin-protein ligase RNF8 OS=Rattus norvegicus GN=Rnf8 PE=2
SV=1
Length = 487
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 104 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR-RVNS 156
+E E +C IC E + V +C HS C C W R CP CR + R NS
Sbjct: 399 LENELQCIICSEYFIEAVTLNCAHSFCSFCISEWMKRKVECPICRKDIESRTNS 452
>sp|P38239|YBR2_YEAST Uncharacterized RING finger protein YBR062C OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YBR062C PE=1
SV=2
Length = 180
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 93 RMDKGKLSEIDIEREEECGICL------EICCKIVLPDCNHSMCMRCYRNWRARSQSCPF 146
R++K KL D C IC E + LP C+H + C W +RS +CP
Sbjct: 97 RINKKKLKATD-----NCSICYTNYLEDEYPLVVELPHCHHKFDLECLSVWLSRSTTCPL 151
Query: 147 CRDSL 151
CRD++
Sbjct: 152 CRDNV 156
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 3 OS=Arabidopsis
thaliana GN=At5g43530 PE=3 SV=1
Length = 1277
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 109 ECGICLEICCKIVLPDCNHSMCMRC-YRNWRARS-QSCPFCRDSLRRV 154
EC ICLE VL C H MC C +WR+ S CP CR L+R
Sbjct: 1039 ECPICLESADDPVLTPCAHRMCRECLLTSWRSPSCGLCPICRTILKRT 1086
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2
SV=1
Length = 324
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 109 ECGICLEICCKI----VLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 151
EC ICL K +LP CNHS + C W +CP CR+++
Sbjct: 126 ECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172
>sp|Q496Y0|LONF3_HUMAN LON peptidase N-terminal domain and RING finger protein 3 OS=Homo
sapiens GN=LONRF3 PE=1 SV=1
Length = 759
Score = 39.7 bits (91), Expect = 0.015, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 109 ECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153
EC +C+ + + V C H+ C++C + CP C+D L +
Sbjct: 466 ECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQ 510
>sp|Q8HXH0|LONF3_MACFA LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca
fascicularis GN=LONRF3 PE=2 SV=1
Length = 718
Score = 39.7 bits (91), Expect = 0.015, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 109 ECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153
EC +C+ + + V C H+ C++C + CP C+D L +
Sbjct: 425 ECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQ 469
>sp|Q0IIM1|RN168_BOVIN E3 ubiquitin-protein ligase RNF168 OS=Bos taurus GN=RNF168 PE=2
SV=2
Length = 573
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 109 ECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRVNS 156
+C IC+EI + V CNH++C C+ + + S CPFCR RRV+S
Sbjct: 15 QCQICVEILFEPVTLPCNHTLCKPCFESTVEKASLCCPFCR---RRVSS 60
>sp|P0C775|P28_VACC8 E3 ubiquitin-protein ligase p28-like OS=Vaccinia virus (strain
LC16m8) GN=p28 PE=3 SV=1
Length = 239
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 15/66 (22%)
Query: 104 IEREEECGICLEICCKI---------VLPDCNHSMCMRCYRNWR------ARSQSCPFCR 148
+ +E+ECGIC E+ +L CNH C+ C W S +CP CR
Sbjct: 164 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHKTRRETGASDNCPICR 223
Query: 149 DSLRRV 154
R +
Sbjct: 224 TRFRNI 229
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.140 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,141,455
Number of Sequences: 539616
Number of extensions: 2979035
Number of successful extensions: 11297
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 356
Number of HSP's that attempted gapping in prelim test: 10795
Number of HSP's gapped (non-prelim): 738
length of query: 206
length of database: 191,569,459
effective HSP length: 112
effective length of query: 94
effective length of database: 131,132,467
effective search space: 12326451898
effective search space used: 12326451898
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)