Query 028627
Match_columns 206
No_of_seqs 209 out of 1988
Neff 7.8
Searched_HMMs 29240
Date Tue Mar 26 00:19:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ng2_A RNF4, snurf, ring finge 99.5 4.8E-15 1.6E-19 99.3 4.1 56 105-160 8-70 (71)
2 2djb_A Polycomb group ring fin 99.5 1.3E-14 4.4E-19 97.8 5.5 56 103-158 11-67 (72)
3 2egp_A Tripartite motif-contai 99.5 1.2E-14 4E-19 99.4 3.4 60 103-162 8-74 (79)
4 3lrq_A E3 ubiquitin-protein li 99.5 8.2E-15 2.8E-19 105.2 2.1 55 105-159 20-76 (100)
5 1t1h_A Gspef-atpub14, armadill 99.5 1.9E-14 6.5E-19 98.3 3.8 53 104-156 5-58 (78)
6 2ecy_A TNF receptor-associated 99.5 4.5E-14 1.5E-18 93.5 5.5 52 103-154 11-63 (66)
7 4ayc_A E3 ubiquitin-protein li 99.5 4.8E-14 1.6E-18 106.8 6.0 50 105-154 51-100 (138)
8 2xeu_A Ring finger protein 4; 99.5 1.4E-14 4.9E-19 94.8 2.5 53 106-158 2-61 (64)
9 2yur_A Retinoblastoma-binding 99.5 3.9E-14 1.3E-18 96.0 4.6 50 103-152 11-63 (74)
10 2ea6_A Ring finger protein 4; 99.5 3.3E-14 1.1E-18 94.5 4.1 51 103-153 11-68 (69)
11 2d8t_A Dactylidin, ring finger 99.5 1.5E-14 5.1E-19 97.3 2.4 50 105-154 13-62 (71)
12 2ysl_A Tripartite motif-contai 99.5 5.4E-14 1.8E-18 94.7 5.1 53 103-155 16-71 (73)
13 2csy_A Zinc finger protein 183 99.5 4.7E-14 1.6E-18 97.1 4.8 49 104-152 12-60 (81)
14 2ecv_A Tripartite motif-contai 99.5 8.6E-14 2.9E-18 96.0 5.9 61 103-163 15-81 (85)
15 2kiz_A E3 ubiquitin-protein li 99.5 7.7E-14 2.6E-18 93.0 5.3 52 105-156 12-66 (69)
16 2ecw_A Tripartite motif-contai 99.4 6.5E-14 2.2E-18 96.6 5.1 59 103-161 15-79 (85)
17 2ect_A Ring finger protein 126 99.4 8.7E-14 3E-18 94.9 4.5 57 103-159 11-70 (78)
18 1iym_A EL5; ring-H2 finger, ub 99.4 6.3E-14 2.2E-18 89.2 3.4 48 105-152 3-54 (55)
19 3ztg_A E3 ubiquitin-protein li 99.4 9.6E-14 3.3E-18 97.7 4.5 50 103-152 9-61 (92)
20 2ct2_A Tripartite motif protei 99.4 1.4E-13 4.8E-18 95.8 5.2 54 103-156 11-71 (88)
21 2ckl_A Polycomb group ring fin 99.4 4.9E-14 1.7E-18 102.3 2.9 52 103-154 11-63 (108)
22 2kr4_A Ubiquitin conjugation f 99.4 1.7E-13 6E-18 95.5 4.4 54 103-156 10-63 (85)
23 2ecm_A Ring finger and CHY zin 99.4 1.2E-13 4.3E-18 87.8 3.3 48 105-152 3-54 (55)
24 2ep4_A Ring finger protein 24; 99.4 2.8E-13 9.6E-18 91.5 5.0 52 103-154 11-65 (74)
25 3fl2_A E3 ubiquitin-protein li 99.4 1.2E-13 4.2E-18 102.6 3.4 49 105-153 50-99 (124)
26 1x4j_A Ring finger protein 38; 99.4 1.4E-13 4.6E-18 93.4 3.2 49 105-153 21-72 (75)
27 2l0b_A E3 ubiquitin-protein li 99.4 2.5E-13 8.6E-18 95.7 4.7 49 105-153 38-89 (91)
28 2ecn_A Ring finger protein 141 99.4 9.2E-14 3.1E-18 92.9 2.2 51 104-155 12-62 (70)
29 2y43_A E3 ubiquitin-protein li 99.4 1.3E-13 4.3E-18 98.5 3.0 51 105-155 20-71 (99)
30 1chc_A Equine herpes virus-1 r 99.4 1.7E-13 5.7E-18 91.0 3.4 48 106-153 4-52 (68)
31 1g25_A CDK-activating kinase a 99.4 2.1E-13 7.3E-18 89.9 3.7 53 106-158 2-60 (65)
32 2kre_A Ubiquitin conjugation f 99.4 3.2E-13 1.1E-17 97.0 4.2 54 103-156 25-78 (100)
33 2ysj_A Tripartite motif-contai 99.4 5.4E-13 1.9E-17 87.3 4.7 45 103-147 16-63 (63)
34 1jm7_A BRCA1, breast cancer ty 99.4 4.4E-13 1.5E-17 97.4 4.4 55 106-160 20-77 (112)
35 2ecl_A Ring-box protein 2; RNF 99.3 3.1E-13 1E-17 93.3 3.0 49 106-154 14-77 (81)
36 1wgm_A Ubiquitin conjugation f 99.3 6.6E-13 2.3E-17 95.0 4.4 54 103-156 18-72 (98)
37 2ecj_A Tripartite motif-contai 99.3 1.1E-12 3.9E-17 84.1 4.9 45 103-147 11-58 (58)
38 4ap4_A E3 ubiquitin ligase RNF 99.3 4.4E-13 1.5E-17 99.7 3.3 58 105-162 5-69 (133)
39 1v87_A Deltex protein 2; ring- 99.3 7.1E-13 2.4E-17 96.8 4.2 48 106-153 24-94 (114)
40 1z6u_A NP95-like ring finger p 99.3 6.5E-13 2.2E-17 102.1 3.3 50 105-154 76-126 (150)
41 3hct_A TNF receptor-associated 99.3 7.5E-13 2.6E-17 97.5 3.4 51 103-153 14-65 (118)
42 1rmd_A RAG1; V(D)J recombinati 99.3 8E-13 2.7E-17 96.9 3.4 51 105-155 21-72 (116)
43 3l11_A E3 ubiquitin-protein li 99.3 4.7E-13 1.6E-17 98.0 0.4 50 104-153 12-62 (115)
44 3dpl_R Ring-box protein 1; ubi 99.3 3E-12 1E-16 92.9 3.9 48 106-153 36-101 (106)
45 1e4u_A Transcriptional repress 99.3 9.7E-12 3.3E-16 85.3 6.2 53 104-156 8-65 (78)
46 2ckl_B Ubiquitin ligase protei 99.2 1.7E-12 5.7E-17 101.0 2.5 49 105-153 52-102 (165)
47 1bor_A Transcription factor PM 99.2 2.5E-12 8.5E-17 82.5 2.5 46 105-153 4-49 (56)
48 1jm7_B BARD1, BRCA1-associated 99.2 1.7E-12 5.7E-17 95.5 1.8 53 105-159 20-73 (117)
49 2vje_A E3 ubiquitin-protein li 99.2 3.1E-12 1.1E-16 84.4 2.3 49 105-153 6-57 (64)
50 4ap4_A E3 ubiquitin ligase RNF 99.2 2.7E-12 9.4E-17 95.4 2.0 55 105-159 70-131 (133)
51 2c2l_A CHIP, carboxy terminus 99.2 1.3E-11 4.5E-16 102.6 6.0 54 103-156 204-258 (281)
52 3knv_A TNF receptor-associated 99.2 3.4E-12 1.2E-16 97.1 1.9 51 103-153 27-78 (141)
53 2vje_B MDM4 protein; proto-onc 99.2 8.5E-12 2.9E-16 82.0 2.4 49 105-153 5-56 (63)
54 4ic3_A E3 ubiquitin-protein li 99.2 5.3E-12 1.8E-16 85.5 1.1 44 106-153 23-67 (74)
55 2yu4_A E3 SUMO-protein ligase 99.1 1.1E-11 3.6E-16 87.9 2.4 52 105-156 5-66 (94)
56 2y1n_A E3 ubiquitin-protein li 99.1 2.1E-11 7.1E-16 106.5 4.2 50 106-155 331-381 (389)
57 2f42_A STIP1 homology and U-bo 99.1 3.1E-11 1.1E-15 95.1 3.7 56 103-158 102-158 (179)
58 3hcs_A TNF receptor-associated 99.1 3.7E-11 1.3E-15 93.6 3.3 52 103-154 14-66 (170)
59 4a0k_B E3 ubiquitin-protein li 99.1 1.3E-11 4.3E-16 91.0 0.2 48 106-153 47-112 (117)
60 2ecg_A Baculoviral IAP repeat- 99.1 4.9E-11 1.7E-15 80.8 2.3 44 106-153 24-68 (75)
61 2ea5_A Cell growth regulator w 99.0 2.2E-10 7.5E-15 76.3 3.8 45 105-153 13-58 (68)
62 2d8s_A Cellular modulator of i 99.0 3.5E-10 1.2E-14 77.8 4.0 49 105-153 13-70 (80)
63 3htk_C E3 SUMO-protein ligase 98.9 1.9E-10 6.6E-15 95.2 2.2 59 104-162 178-241 (267)
64 2yho_A E3 ubiquitin-protein li 98.9 1.1E-10 3.7E-15 80.1 0.6 45 106-154 17-62 (79)
65 2ct0_A Non-SMC element 1 homol 98.9 1.3E-09 4.4E-14 73.8 4.8 50 105-154 13-65 (74)
66 2bay_A PRE-mRNA splicing facto 98.8 1E-09 3.5E-14 71.5 1.7 52 107-158 3-55 (61)
67 3t6p_A Baculoviral IAP repeat- 98.8 9.9E-10 3.4E-14 94.9 0.4 45 105-153 293-338 (345)
68 1wim_A KIAA0161 protein; ring 98.7 5.7E-09 2E-13 73.5 2.8 45 106-150 4-61 (94)
69 3k1l_B Fancl; UBC, ring, RWD, 98.6 1.2E-08 3.9E-13 87.4 1.4 48 105-152 306-372 (381)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.4 1.9E-07 6.4E-12 60.5 4.5 48 105-152 4-58 (60)
71 3vk6_A E3 ubiquitin-protein li 98.4 2.1E-07 7.1E-12 65.8 3.2 47 109-155 3-51 (101)
72 3nw0_A Non-structural maintena 97.6 4.7E-05 1.6E-09 62.3 4.7 51 106-156 179-232 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 96.4 0.0015 5.1E-08 45.8 2.3 33 106-138 2-37 (101)
74 2ko5_A Ring finger protein Z; 94.1 0.029 1E-06 38.9 2.7 48 104-153 25-73 (99)
75 3m62_A Ubiquitin conjugation f 94.1 0.031 1.1E-06 53.7 3.7 57 103-159 887-944 (968)
76 2cs3_A Protein C14ORF4, MY039 92.8 0.14 4.7E-06 34.4 4.2 35 105-139 13-51 (93)
77 2lri_C Autoimmune regulator; Z 84.4 0.72 2.5E-05 29.7 2.8 46 106-151 11-60 (66)
78 1z60_A TFIIH basal transcripti 83.5 0.83 2.9E-05 28.8 2.7 40 108-147 16-58 (59)
79 1weo_A Cellulose synthase, cat 80.6 4.9 0.00017 27.4 5.8 48 106-153 15-70 (93)
80 1z2q_A LM5-1; membrane protein 80.4 1.1 3.7E-05 30.1 2.6 38 99-136 13-54 (84)
81 3o36_A Transcription intermedi 79.9 1.1 3.9E-05 34.3 2.9 47 106-152 3-53 (184)
82 1joc_A EEA1, early endosomal a 79.1 1.8 6.2E-05 31.3 3.6 34 101-134 63-100 (125)
83 2yw8_A RUN and FYVE domain-con 77.9 0.93 3.2E-05 30.3 1.6 35 101-135 13-51 (82)
84 3u5n_A E3 ubiquitin-protein li 76.9 1.1 3.8E-05 35.2 2.0 47 105-151 5-55 (207)
85 3i2d_A E3 SUMO-protein ligase 76.1 3.7 0.00013 35.3 5.2 50 105-154 247-301 (371)
86 3t7l_A Zinc finger FYVE domain 74.2 1.9 6.5E-05 29.3 2.4 36 101-136 14-53 (90)
87 1x4u_A Zinc finger, FYVE domai 71.6 2.1 7.1E-05 28.6 2.1 35 100-134 7-45 (84)
88 2l5u_A Chromodomain-helicase-D 70.7 2.4 8.1E-05 26.6 2.1 45 105-149 9-57 (61)
89 2ro1_A Transcription intermedi 67.6 3 0.0001 32.2 2.5 45 107-151 2-50 (189)
90 1mm2_A MI2-beta; PHD, zinc fin 66.4 1.4 4.9E-05 27.6 0.3 46 105-150 7-56 (61)
91 1wil_A KIAA1045 protein; ring 66.0 8.3 0.00028 26.0 4.1 33 105-137 13-47 (89)
92 2jmo_A Parkin; IBR, E3 ligase, 65.5 0.52 1.8E-05 31.5 -2.0 19 124-144 55-73 (80)
93 1wd2_A Ariadne-1 protein homol 64.2 1.1 3.8E-05 28.2 -0.5 33 107-139 6-46 (60)
94 3mpx_A FYVE, rhogef and PH dom 64.2 1.4 4.8E-05 38.0 0.0 49 103-151 371-430 (434)
95 1vfy_A Phosphatidylinositol-3- 62.4 3.9 0.00013 26.5 2.0 28 107-134 11-42 (73)
96 1y02_A CARP2, FYVE-ring finger 62.3 0.67 2.3E-05 33.6 -2.1 47 105-151 17-67 (120)
97 4fo9_A E3 SUMO-protein ligase 62.2 6.8 0.00023 33.5 3.9 49 105-153 213-266 (360)
98 3zyq_A Hepatocyte growth facto 60.4 3.3 0.00011 32.9 1.6 31 105-135 162-196 (226)
99 1dvp_A HRS, hepatocyte growth 59.7 3.2 0.00011 32.7 1.4 31 105-135 159-193 (220)
100 1zbd_B Rabphilin-3A; G protein 59.3 4.7 0.00016 29.5 2.1 30 105-134 53-87 (134)
101 4g9i_A Hydrogenase maturation 58.7 4.7 0.00016 38.0 2.5 49 105-153 104-190 (772)
102 2gmg_A Hypothetical protein PF 58.6 2.4 8.4E-05 29.8 0.4 28 119-151 67-94 (105)
103 2yql_A PHD finger protein 21A; 58.0 0.85 2.9E-05 28.1 -1.9 44 105-148 7-54 (56)
104 3ttc_A HYPF, transcriptional r 57.4 4.8 0.00016 37.2 2.3 47 105-151 15-99 (657)
105 3fyb_A Protein of unknown func 57.2 4.3 0.00015 28.2 1.4 12 128-139 41-52 (104)
106 2o35_A Hypothetical protein DU 57.1 4.3 0.00015 28.2 1.4 12 128-139 42-53 (105)
107 2cor_A Pinch protein; LIM doma 57.1 10 0.00035 24.5 3.3 40 106-153 14-53 (79)
108 3ql9_A Transcriptional regulat 56.3 23 0.00079 25.7 5.4 45 105-149 55-110 (129)
109 2fiy_A Protein FDHE homolog; F 55.6 1.1 3.7E-05 37.7 -2.2 46 105-150 180-231 (309)
110 1wig_A KIAA1808 protein; LIM d 55.2 7.5 0.00026 24.7 2.4 37 108-152 6-42 (73)
111 2k16_A Transcription initiatio 55.1 2.8 9.5E-05 27.2 0.2 48 105-152 16-70 (75)
112 1f62_A Transcription factor WS 55.0 4.9 0.00017 23.9 1.3 41 109-149 2-49 (51)
113 2lbm_A Transcriptional regulat 54.9 13 0.00045 27.4 3.9 45 105-149 61-116 (142)
114 1x62_A C-terminal LIM domain p 54.6 7.8 0.00027 24.9 2.4 41 105-153 13-53 (79)
115 1nyp_A Pinch protein; LIM doma 54.4 7 0.00024 24.1 2.1 39 107-153 5-43 (66)
116 1wfk_A Zinc finger, FYVE domai 53.2 5 0.00017 27.1 1.3 32 105-136 7-42 (88)
117 3vth_A Hydrogenase maturation 53.1 5.7 0.0002 37.4 2.1 48 105-152 109-194 (761)
118 1x64_A Alpha-actinin-2 associa 52.3 11 0.00039 24.7 3.0 41 105-153 23-63 (89)
119 2d8x_A Protein pinch; LIM doma 52.2 7.7 0.00026 24.2 2.0 40 107-154 5-44 (70)
120 1wyh_A SLIM 2, skeletal muscle 51.7 12 0.00042 23.3 3.0 39 107-153 5-45 (72)
121 2zet_C Melanophilin; complex, 51.2 6.1 0.00021 29.6 1.6 29 106-134 67-100 (153)
122 2dar_A PDZ and LIM domain prot 51.1 7.9 0.00027 25.6 2.1 40 106-153 24-63 (90)
123 1x6a_A LIMK-2, LIM domain kina 50.6 8.8 0.0003 24.7 2.2 37 108-152 16-52 (81)
124 2d8z_A Four and A half LIM dom 50.4 9.6 0.00033 23.7 2.3 37 108-152 6-42 (70)
125 1x4l_A Skeletal muscle LIM-pro 50.2 12 0.00042 23.3 2.8 38 107-152 5-46 (72)
126 1we9_A PHD finger family prote 46.6 2.5 8.6E-05 26.5 -1.1 46 105-150 4-58 (64)
127 1xwh_A Autoimmune regulator; P 45.4 3 0.0001 26.4 -0.8 46 105-150 6-55 (66)
128 1v6g_A Actin binding LIM prote 44.9 9.4 0.00032 24.6 1.6 38 108-153 16-53 (81)
129 3mjh_B Early endosome antigen 44.5 3.8 0.00013 22.8 -0.4 15 106-120 4-18 (34)
130 2pv0_B DNA (cytosine-5)-methyl 43.5 25 0.00084 30.4 4.4 46 105-150 91-148 (386)
131 2e6r_A Jumonji/ARID domain-con 43.4 2.7 9.1E-05 28.7 -1.4 48 103-150 12-66 (92)
132 2ysm_A Myeloid/lymphoid or mix 43.4 5 0.00017 28.0 -0.0 35 105-139 5-42 (111)
133 1m3v_A FLIN4, fusion of the LI 43.3 15 0.0005 25.8 2.5 48 106-153 31-81 (122)
134 2dlo_A Thyroid receptor-intera 42.6 8.6 0.00029 24.8 1.1 39 107-153 15-53 (81)
135 1x63_A Skeletal muscle LIM-pro 42.5 13 0.00043 23.9 1.9 39 107-153 15-55 (82)
136 2cur_A Skeletal muscle LIM-pro 42.2 10 0.00034 23.5 1.4 38 107-152 5-42 (69)
137 1x68_A FHL5 protein; four-and- 41.8 9.8 0.00034 24.2 1.3 37 108-152 6-46 (76)
138 2cu8_A Cysteine-rich protein 2 41.3 11 0.00039 23.8 1.5 39 107-153 9-48 (76)
139 2cuq_A Four and A half LIM dom 41.2 14 0.00048 23.6 2.0 37 108-152 16-52 (80)
140 2d8v_A Zinc finger FYVE domain 40.5 11 0.00037 24.2 1.3 33 105-138 6-39 (67)
141 1fp0_A KAP-1 corepressor; PHD 39.1 8.9 0.00031 26.0 0.7 46 105-150 23-72 (88)
142 2ehe_A Four and A half LIM dom 38.3 22 0.00076 22.7 2.7 38 108-153 16-55 (82)
143 1x3h_A Leupaxin; paxillin fami 38.1 14 0.00046 23.6 1.5 38 108-153 16-53 (80)
144 2ct7_A Ring finger protein 31; 37.2 2 6.9E-05 28.8 -2.8 15 123-137 47-61 (86)
145 3a1b_A DNA (cytosine-5)-methyl 36.2 22 0.00075 26.8 2.6 45 105-149 77-133 (159)
146 1x4k_A Skeletal muscle LIM-pro 36.1 12 0.00042 23.3 1.0 38 108-153 6-45 (72)
147 2jrp_A Putative cytoplasmic pr 36.1 1.9 6.6E-05 28.9 -2.9 11 108-118 3-13 (81)
148 2lv9_A Histone-lysine N-methyl 36.1 8.2 0.00028 26.5 0.2 43 106-149 27-75 (98)
149 2l43_A N-teminal domain from h 35.3 32 0.0011 22.9 3.1 48 105-152 23-77 (88)
150 2l3k_A Rhombotin-2, linker, LI 34.2 21 0.0007 25.1 2.1 32 107-138 36-69 (123)
151 1iml_A CRIP, cysteine rich int 33.6 13 0.00046 23.5 0.9 42 106-149 26-69 (76)
152 1x61_A Thyroid receptor intera 33.4 19 0.00066 22.3 1.7 38 107-152 5-44 (72)
153 2co8_A NEDD9 interacting prote 33.3 37 0.0013 21.8 3.1 42 105-154 13-55 (82)
154 2kgg_A Histone demethylase jar 32.9 24 0.00083 20.9 2.0 40 109-148 4-52 (52)
155 1g47_A Pinch protein; LIM doma 32.8 23 0.0008 22.2 2.0 41 106-154 10-52 (77)
156 2egq_A FHL1 protein; LIM domai 32.0 17 0.0006 22.9 1.3 38 108-153 16-58 (77)
157 2dj7_A Actin-binding LIM prote 31.8 26 0.0009 22.5 2.2 40 105-152 13-53 (80)
158 2l4z_A DNA endonuclease RBBP8, 31.5 15 0.00051 26.1 0.9 38 107-152 61-99 (123)
159 3lqh_A Histone-lysine N-methyl 31.4 12 0.00041 28.8 0.4 45 107-151 2-64 (183)
160 1wen_A Inhibitor of growth fam 31.3 28 0.00096 22.3 2.2 44 105-151 14-66 (71)
161 1weu_A Inhibitor of growth fam 31.3 27 0.00091 23.7 2.1 43 105-151 34-86 (91)
162 2iyb_E Testin, TESS, TES; LIM 31.2 17 0.00057 22.3 1.0 36 109-152 4-43 (65)
163 2ri7_A Nucleosome-remodeling f 30.1 9.6 0.00033 28.6 -0.3 45 105-150 6-59 (174)
164 2jne_A Hypothetical protein YF 29.6 3.2 0.00011 28.8 -2.8 43 107-154 32-74 (101)
165 1rut_X Flinc4, fusion protein 29.2 17 0.00059 27.5 1.0 47 106-152 31-80 (188)
166 2d8y_A Eplin protein; LIM doma 28.5 49 0.0017 21.5 3.2 41 106-154 14-55 (91)
167 2xjy_A Rhombotin-2; oncoprotei 27.9 26 0.0009 24.5 1.8 49 105-153 27-78 (131)
168 3v43_A Histone acetyltransfera 27.5 80 0.0028 21.7 4.3 30 106-135 4-42 (112)
169 2vpb_A Hpygo1, pygopus homolog 26.3 35 0.0012 21.4 1.9 30 105-134 6-40 (65)
170 2yt5_A Metal-response element- 26.2 21 0.0007 22.2 0.8 46 105-150 4-61 (66)
171 1j2o_A FLIN2, fusion of rhombo 26.1 31 0.0011 23.7 1.9 34 106-139 29-65 (114)
172 1skh_A Major prion protein 2; 25.7 35 0.0012 18.2 1.5 15 10-24 10-24 (30)
173 1l8d_A DNA double-strand break 25.4 37 0.0013 23.3 2.1 11 142-152 48-58 (112)
174 2ku7_A MLL1 PHD3-CYP33 RRM chi 23.2 98 0.0033 21.2 4.2 28 124-151 7-45 (140)
175 3f6q_B LIM and senescent cell 23.2 28 0.00096 21.3 1.0 41 106-154 10-52 (72)
176 3c5k_A HD6, histone deacetylas 22.6 43 0.0015 23.3 2.0 25 107-131 24-48 (109)
177 2lcq_A Putative toxin VAPC6; P 22.4 22 0.00074 26.4 0.4 25 123-153 136-160 (165)
178 2rgt_A Fusion of LIM/homeobox 21.3 86 0.003 22.9 3.6 46 105-152 31-76 (169)
179 2jvx_A NF-kappa-B essential mo 20.5 24 0.00082 18.5 0.2 11 142-152 4-14 (28)
180 1a7i_A QCRP2 (LIM1); LIM domai 20.1 21 0.00072 22.8 -0.1 39 107-153 7-46 (81)
No 1
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.53 E-value=4.8e-15 Score=99.29 Aligned_cols=56 Identities=25% Similarity=0.701 Sum_probs=49.5
Q ss_pred CccCcccccccccccc-------cccCCCCcccHHHHHHHHhcCCCCCCccccccccCCCCcc
Q 028627 105 EREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLW 160 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~-------~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~~~ 160 (206)
.++..|+||++.+.++ +.++|||.||..|+.+|+....+||+||.++...+...++
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 5678999999999887 7899999999999999999999999999999876665543
No 2
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=97.84 Aligned_cols=56 Identities=20% Similarity=0.425 Sum_probs=49.2
Q ss_pred ccCccCccccccccccccccc-CCCCcccHHHHHHHHhcCCCCCCccccccccCCCC
Q 028627 103 DIEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGD 158 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~~~~-~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~ 158 (206)
..+++..|+||++.+.+++.+ +|||.||..||.+|+.....||+||.++...++..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCC
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccc
Confidence 346788999999999999886 99999999999999999999999999998665543
No 3
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.49 E-value=1.2e-14 Score=99.38 Aligned_cols=60 Identities=28% Similarity=0.535 Sum_probs=51.0
Q ss_pred ccCccCcccccccccccccccCCCCcccHHHHHHHHhc-------CCCCCCccccccccCCCCcccc
Q 028627 103 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-------SQSCPFCRDSLRRVNSGDLWIY 162 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~-------~~~CP~Cr~~~~~~~~~~~~~~ 162 (206)
...++..|+||++.+.+|+.++|||.||..|+.+|+.. ...||.||.++...++..++..
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l 74 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHL 74 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSS
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHH
Confidence 34678899999999999999999999999999999986 6799999999986555555443
No 4
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.48 E-value=8.2e-15 Score=105.16 Aligned_cols=55 Identities=29% Similarity=0.678 Sum_probs=47.9
Q ss_pred CccCcccccccccccccc-cCCCCcccHHHHHHHHhcC-CCCCCccccccccCCCCc
Q 028627 105 EREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARS-QSCPFCRDSLRRVNSGDL 159 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~-~~CgH~Fc~~Ci~~w~~~~-~~CP~Cr~~~~~~~~~~~ 159 (206)
.++..|+||++.+.+|+. ++|||.||..||.+|+... ..||.||.++....+..+
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~ 76 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNC 76 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhh
Confidence 467899999999999999 9999999999999999987 799999999975544333
No 5
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.47 E-value=1.9e-14 Score=98.29 Aligned_cols=53 Identities=17% Similarity=0.339 Sum_probs=47.7
Q ss_pred cCccCcccccccccccccccCCCCcccHHHHHHHHhc-CCCCCCccccccccCC
Q 028627 104 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRVNS 156 (206)
Q Consensus 104 ~~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~-~~~CP~Cr~~~~~~~~ 156 (206)
..++..|+||++.+.+|+.++|||.||..||.+|+.. ..+||.||.++....+
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l 58 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL 58 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCC
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhC
Confidence 3578899999999999999999999999999999986 8899999999875443
No 6
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=4.5e-14 Score=93.48 Aligned_cols=52 Identities=23% Similarity=0.632 Sum_probs=46.2
Q ss_pred ccCccCcccccccccccccccCCCCcccHHHHHHHHh-cCCCCCCcccccccc
Q 028627 103 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRV 154 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~-~~~~CP~Cr~~~~~~ 154 (206)
...++..|+||++.+.+++.++|||.||..|+.+|+. ....||+||.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 3456789999999999999999999999999999994 678999999998754
No 7
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.47 E-value=4.8e-14 Score=106.81 Aligned_cols=50 Identities=36% Similarity=0.850 Sum_probs=45.9
Q ss_pred CccCcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCcccccccc
Q 028627 105 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 154 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~ 154 (206)
.++..|+||++.+.+|+.++|||.||..||..|+....+||.||.++...
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 35678999999999999999999999999999999999999999998643
No 8
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.47 E-value=1.4e-14 Score=94.83 Aligned_cols=53 Identities=26% Similarity=0.687 Sum_probs=46.3
Q ss_pred ccCcccccccccccc-------cccCCCCcccHHHHHHHHhcCCCCCCccccccccCCCC
Q 028627 106 REEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGD 158 (206)
Q Consensus 106 ~~~~C~IC~~~~~~~-------~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~ 158 (206)
++.+|+||++.+.++ +.++|||.||..|+.+|+..+..||.||.++...+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 61 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceee
Confidence 457899999999876 77899999999999999999999999999987655433
No 9
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.46 E-value=3.9e-14 Score=96.05 Aligned_cols=50 Identities=32% Similarity=0.607 Sum_probs=44.9
Q ss_pred ccCccCcccccccccccccccC-CCCcccHHHHHHHHhcC--CCCCCcccccc
Q 028627 103 DIEREEECGICLEICCKIVLPD-CNHSMCMRCYRNWRARS--QSCPFCRDSLR 152 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~~~~~-CgH~Fc~~Ci~~w~~~~--~~CP~Cr~~~~ 152 (206)
+..++..|+||++.+.+|+.++ |||.||..||..|+... ..||.||+++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 4467889999999999999999 99999999999999864 79999999754
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.3e-14 Score=94.48 Aligned_cols=51 Identities=27% Similarity=0.741 Sum_probs=45.5
Q ss_pred ccCccCcccccccccccc-------cccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 103 DIEREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~-------~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
...+...|+||++.+.++ +.++|||.||..|+.+|+.....||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 335678999999999876 788999999999999999999999999998763
No 11
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-14 Score=97.25 Aligned_cols=50 Identities=28% Similarity=0.685 Sum_probs=46.3
Q ss_pred CccCcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCcccccccc
Q 028627 105 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 154 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~ 154 (206)
.++..|+||++.+.+++.++|||.||..|+.+|+.....||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 56789999999999999999999999999999999999999999998743
No 12
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5.4e-14 Score=94.67 Aligned_cols=53 Identities=34% Similarity=0.787 Sum_probs=46.7
Q ss_pred ccCccCcccccccccccccccCCCCcccHHHHHHHHh---cCCCCCCccccccccC
Q 028627 103 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLRRVN 155 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~---~~~~CP~Cr~~~~~~~ 155 (206)
...++..|+||++.+.+++.++|||.||..|+..|+. ....||+||.++...+
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 3467789999999999999999999999999999997 4679999999987543
No 13
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=4.7e-14 Score=97.09 Aligned_cols=49 Identities=22% Similarity=0.451 Sum_probs=45.7
Q ss_pred cCccCcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 028627 104 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 152 (206)
Q Consensus 104 ~~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~ 152 (206)
......|+||++.+.+|+.++|||.||..|+.+|+.....||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3567899999999999999999999999999999999999999999986
No 14
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=8.6e-14 Score=95.95 Aligned_cols=61 Identities=31% Similarity=0.620 Sum_probs=52.0
Q ss_pred ccCccCcccccccccccccccCCCCcccHHHHHHHHhc------CCCCCCccccccccCCCCccccC
Q 028627 103 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR------SQSCPFCRDSLRRVNSGDLWIYT 163 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~------~~~CP~Cr~~~~~~~~~~~~~~~ 163 (206)
...++..|+||++.+.+++.++|||.||..|+..|+.. ...||.||.++...++..++...
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVA 81 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCC
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHH
Confidence 34677899999999999999999999999999999986 88999999999876655554433
No 15
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=7.7e-14 Score=93.02 Aligned_cols=52 Identities=29% Similarity=0.668 Sum_probs=44.9
Q ss_pred CccCcccccccccc---cccccCCCCcccHHHHHHHHhcCCCCCCccccccccCC
Q 028627 105 EREEECGICLEICC---KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS 156 (206)
Q Consensus 105 ~~~~~C~IC~~~~~---~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~~~ 156 (206)
..+..|+||++.+. .++.++|||.||..|+.+|+....+||+||.++....+
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 56789999999885 34678999999999999999999999999999875543
No 16
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=6.5e-14 Score=96.56 Aligned_cols=59 Identities=34% Similarity=0.545 Sum_probs=50.3
Q ss_pred ccCccCcccccccccccccccCCCCcccHHHHHHHHhc------CCCCCCccccccccCCCCccc
Q 028627 103 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR------SQSCPFCRDSLRRVNSGDLWI 161 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~------~~~CP~Cr~~~~~~~~~~~~~ 161 (206)
...++..|+||++.+.+++.++|||.||..|+..|+.. ...||.||.++....+..+..
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~ 79 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLH 79 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSC
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHH
Confidence 34567899999999999999999999999999999987 789999999988655544433
No 17
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.43 E-value=8.7e-14 Score=94.94 Aligned_cols=57 Identities=30% Similarity=0.552 Sum_probs=47.6
Q ss_pred ccCccCcccccccccccc---cccCCCCcccHHHHHHHHhcCCCCCCccccccccCCCCc
Q 028627 103 DIEREEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDL 159 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~---~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~~ 159 (206)
....+..|+||++.+.++ +.++|||.||..||.+|+.....||+||.++...+...+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 335678999999998755 456999999999999999999999999999986555443
No 18
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.42 E-value=6.3e-14 Score=89.24 Aligned_cols=48 Identities=25% Similarity=0.681 Sum_probs=42.2
Q ss_pred CccCccccccccccc---ccccC-CCCcccHHHHHHHHhcCCCCCCcccccc
Q 028627 105 EREEECGICLEICCK---IVLPD-CNHSMCMRCYRNWRARSQSCPFCRDSLR 152 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~---~~~~~-CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~ 152 (206)
+++.+|+||++.+.+ ++.++ |||.||..|+.+|+..+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 456789999999986 56665 9999999999999999999999999764
No 19
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.42 E-value=9.6e-14 Score=97.68 Aligned_cols=50 Identities=30% Similarity=0.594 Sum_probs=44.7
Q ss_pred ccCccCcccccccccccccccC-CCCcccHHHHHHHHhc--CCCCCCcccccc
Q 028627 103 DIEREEECGICLEICCKIVLPD-CNHSMCMRCYRNWRAR--SQSCPFCRDSLR 152 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~~~~~-CgH~Fc~~Ci~~w~~~--~~~CP~Cr~~~~ 152 (206)
...++..|+||++.+.+|+.++ |||.||..||..|+.. ...||.||.++.
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4467899999999999999999 9999999999999974 469999999873
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.4e-13 Score=95.75 Aligned_cols=54 Identities=31% Similarity=0.688 Sum_probs=47.1
Q ss_pred ccCccCccccccccccc----ccccCCCCcccHHHHHHHHhcC---CCCCCccccccccCC
Q 028627 103 DIEREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARS---QSCPFCRDSLRRVNS 156 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~----~~~~~CgH~Fc~~Ci~~w~~~~---~~CP~Cr~~~~~~~~ 156 (206)
...+...|+||++.+.+ ++.++|||.||..|+..|+... ..||.||.++...+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 44677899999999998 8899999999999999999865 899999999875433
No 21
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.42 E-value=4.9e-14 Score=102.27 Aligned_cols=52 Identities=21% Similarity=0.570 Sum_probs=47.2
Q ss_pred ccCccCccccccccccccccc-CCCCcccHHHHHHHHhcCCCCCCcccccccc
Q 028627 103 DIEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 154 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~~~~-~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~ 154 (206)
...++..|+||++.+.+|+.+ +|||.||..|+..|+..+..||.||.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 345788999999999999987 9999999999999999999999999998754
No 22
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.40 E-value=1.7e-13 Score=95.48 Aligned_cols=54 Identities=17% Similarity=0.007 Sum_probs=48.7
Q ss_pred ccCccCcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCccccccccCC
Q 028627 103 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS 156 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~~~ 156 (206)
...+++.|+||++.+.+|+.++|||.||..||.+|+.+..+||+||.++....+
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l 63 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESML 63 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhc
Confidence 346789999999999999999999999999999999999999999999875443
No 23
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.40 E-value=1.2e-13 Score=87.78 Aligned_cols=48 Identities=25% Similarity=0.581 Sum_probs=42.6
Q ss_pred CccCccccccccccc----ccccCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 028627 105 EREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 152 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~----~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~ 152 (206)
.++..|+||++.+.+ ++.++|||.||..|+.+|+.....||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 356789999999865 677899999999999999999999999999874
No 24
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.8e-13 Score=91.48 Aligned_cols=52 Identities=23% Similarity=0.602 Sum_probs=44.4
Q ss_pred ccCccCcccccccccccccc---cCCCCcccHHHHHHHHhcCCCCCCcccccccc
Q 028627 103 DIEREEECGICLEICCKIVL---PDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 154 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~~~---~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~ 154 (206)
+...+..|+||++.+.++.. ++|||.||..|+.+|+.....||+||.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 33567899999999986544 49999999999999999989999999998643
No 25
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.39 E-value=1.2e-13 Score=102.56 Aligned_cols=49 Identities=31% Similarity=0.636 Sum_probs=44.5
Q ss_pred CccCcccccccccccccccCCCCcccHHHHHHHHhc-CCCCCCccccccc
Q 028627 105 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR 153 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~-~~~CP~Cr~~~~~ 153 (206)
.++..|+||++.+.+|+.++|||.||..||..|+.. ...||.||.++..
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 456899999999999999999999999999999985 5599999999875
No 26
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.4e-13 Score=93.42 Aligned_cols=49 Identities=22% Similarity=0.619 Sum_probs=43.9
Q ss_pred CccCcccccccccccc---cccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 105 EREEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~---~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
.++..|+||++.+..+ +.++|||.||..|+.+|+..+..||+||+++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4668999999999866 668999999999999999999999999998864
No 27
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.39 E-value=2.5e-13 Score=95.68 Aligned_cols=49 Identities=29% Similarity=0.594 Sum_probs=43.8
Q ss_pred CccCccccccccccc---ccccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 105 EREEECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~---~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
..+..|+||++.+.. ++.++|||.||..||.+|+..+.+||+||.++..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 567899999999886 6778999999999999999999999999998753
No 28
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=9.2e-14 Score=92.90 Aligned_cols=51 Identities=35% Similarity=0.939 Sum_probs=46.0
Q ss_pred cCccCcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCccccccccC
Q 028627 104 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN 155 (206)
Q Consensus 104 ~~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~~ 155 (206)
..+...|+||++.+.+ +.++|||.||..|+.+|+.+...||+||.++...+
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 3567899999999999 88999999999999999999999999999987543
No 29
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.38 E-value=1.3e-13 Score=98.48 Aligned_cols=51 Identities=25% Similarity=0.682 Sum_probs=46.0
Q ss_pred CccCccccccccccccccc-CCCCcccHHHHHHHHhcCCCCCCccccccccC
Q 028627 105 EREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN 155 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~-~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~~ 155 (206)
.++..|+||++.+.+|+.+ +|||.||..|+..|+.....||.||.++...+
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhh
Confidence 4568999999999999877 99999999999999999999999999987543
No 30
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.38 E-value=1.7e-13 Score=91.04 Aligned_cols=48 Identities=29% Similarity=0.783 Sum_probs=43.9
Q ss_pred ccCcccccccccccc-cccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 106 REEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 106 ~~~~C~IC~~~~~~~-~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
.+..|+||++.+.++ +.++|||.||..|+.+|+..+.+||.||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 467899999999986 779999999999999999999999999999864
No 31
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.38 E-value=2.1e-13 Score=89.90 Aligned_cols=53 Identities=25% Similarity=0.549 Sum_probs=44.0
Q ss_pred ccCccccccc-ccccc----cccCCCCcccHHHHHHHHhc-CCCCCCccccccccCCCC
Q 028627 106 REEECGICLE-ICCKI----VLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRVNSGD 158 (206)
Q Consensus 106 ~~~~C~IC~~-~~~~~----~~~~CgH~Fc~~Ci~~w~~~-~~~CP~Cr~~~~~~~~~~ 158 (206)
++..|+||++ .+.++ +.++|||.||..|+.+|+.+ ...||.||.++...+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccccee
Confidence 3568999999 88877 46899999999999999764 578999999998665543
No 32
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.37 E-value=3.2e-13 Score=96.98 Aligned_cols=54 Identities=17% Similarity=0.020 Sum_probs=48.7
Q ss_pred ccCccCcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCccccccccCC
Q 028627 103 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS 156 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~~~ 156 (206)
...++..|+||++.+.+|+.++|||.||..||..|+....+||+||.++...++
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L 78 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESML 78 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSS
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhc
Confidence 346789999999999999999999999999999999999999999999875443
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=5.4e-13 Score=87.32 Aligned_cols=45 Identities=36% Similarity=0.841 Sum_probs=40.7
Q ss_pred ccCccCcccccccccccccccCCCCcccHHHHHHHHh---cCCCCCCc
Q 028627 103 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFC 147 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~---~~~~CP~C 147 (206)
...++..|+||++.+.+|+.++|||.||..||.+|+. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3467889999999999999999999999999999998 46789998
No 34
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.35 E-value=4.4e-13 Score=97.36 Aligned_cols=55 Identities=25% Similarity=0.634 Sum_probs=47.2
Q ss_pred ccCcccccccccccccccCCCCcccHHHHHHHHhcC---CCCCCccccccccCCCCcc
Q 028627 106 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS---QSCPFCRDSLRRVNSGDLW 160 (206)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~---~~CP~Cr~~~~~~~~~~~~ 160 (206)
+...|+||++.+.+|+.++|||.||..|+..|+... ..||.||.++....+..+.
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 77 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCC
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccH
Confidence 456899999999999999999999999999999864 4899999999866554443
No 35
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=3.1e-13 Score=93.31 Aligned_cols=49 Identities=27% Similarity=0.677 Sum_probs=41.5
Q ss_pred ccCccccccccccc--------------c-cccCCCCcccHHHHHHHHhcCCCCCCcccccccc
Q 028627 106 REEECGICLEICCK--------------I-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 154 (206)
Q Consensus 106 ~~~~C~IC~~~~~~--------------~-~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~ 154 (206)
++..|+||++.+.+ + +.++|||.||..||.+|+..+.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 56789999999865 3 3346999999999999999999999999988643
No 36
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.34 E-value=6.6e-13 Score=95.00 Aligned_cols=54 Identities=19% Similarity=0.102 Sum_probs=48.6
Q ss_pred ccCccCcccccccccccccccCCC-CcccHHHHHHHHhcCCCCCCccccccccCC
Q 028627 103 DIEREEECGICLEICCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRRVNS 156 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~~~~~Cg-H~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~~~ 156 (206)
...+++.|+||++.+.+||.++|| |.||..||.+|+....+||+||.++....+
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI 72 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhc
Confidence 345789999999999999999999 999999999999988999999999875433
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.1e-12 Score=84.10 Aligned_cols=45 Identities=33% Similarity=0.959 Sum_probs=39.9
Q ss_pred ccCccCcccccccccccccccCCCCcccHHHHHHHHh---cCCCCCCc
Q 028627 103 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFC 147 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~---~~~~CP~C 147 (206)
...++..|+||++.+.+++.++|||.||..|+.+|+. ....||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456789999999999999999999999999999954 57899998
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.33 E-value=4.4e-13 Score=99.71 Aligned_cols=58 Identities=26% Similarity=0.677 Sum_probs=50.7
Q ss_pred CccCcccccccccccc-------cccCCCCcccHHHHHHHHhcCCCCCCccccccccCCCCcccc
Q 028627 105 EREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIY 162 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~-------~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~~~~~ 162 (206)
.++.+|+||++.+.++ +.++|||.||..||.+|+....+||.||+++.......++..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~ 69 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG 69 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCS
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccC
Confidence 4578999999999988 889999999999999999999999999999987666555444
No 39
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.33 E-value=7.1e-13 Score=96.79 Aligned_cols=48 Identities=29% Similarity=0.626 Sum_probs=41.0
Q ss_pred ccCccccccccccccc------------------ccCCCCcccHHHHHHHH-----hcCCCCCCccccccc
Q 028627 106 REEECGICLEICCKIV------------------LPDCNHSMCMRCYRNWR-----ARSQSCPFCRDSLRR 153 (206)
Q Consensus 106 ~~~~C~IC~~~~~~~~------------------~~~CgH~Fc~~Ci~~w~-----~~~~~CP~Cr~~~~~ 153 (206)
.+..|+||++.+.++. .++|||.||..||.+|+ ....+||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4568999999997643 68999999999999999 457899999998864
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.31 E-value=6.5e-13 Score=102.10 Aligned_cols=50 Identities=30% Similarity=0.631 Sum_probs=45.3
Q ss_pred CccCcccccccccccccccCCCCcccHHHHHHHHhcC-CCCCCcccccccc
Q 028627 105 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLRRV 154 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~-~~CP~Cr~~~~~~ 154 (206)
.++..|+||++.+.+|+.++|||.||..||..|+... ..||.||.++...
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4678999999999999999999999999999999865 4899999998754
No 41
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.31 E-value=7.5e-13 Score=97.51 Aligned_cols=51 Identities=27% Similarity=0.544 Sum_probs=45.8
Q ss_pred ccCccCcccccccccccccccCCCCcccHHHHHHHHhcCC-CCCCccccccc
Q 028627 103 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQ-SCPFCRDSLRR 153 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~-~CP~Cr~~~~~ 153 (206)
...++..|+||++.+.+|+.++|||.||..||.+|+.... .||.||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 4467789999999999999999999999999999998654 99999998864
No 42
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.31 E-value=8e-13 Score=96.92 Aligned_cols=51 Identities=25% Similarity=0.511 Sum_probs=46.0
Q ss_pred CccCcccccccccccccccCCCCcccHHHHHHHHhc-CCCCCCccccccccC
Q 028627 105 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRVN 155 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~-~~~CP~Cr~~~~~~~ 155 (206)
.++..|+||++.+.+|+.++|||.||..||.+|+.. ...||.||.++...+
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 456899999999999999999999999999999986 789999999987543
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.27 E-value=4.7e-13 Score=98.03 Aligned_cols=50 Identities=38% Similarity=0.883 Sum_probs=45.3
Q ss_pred cCccCcccccccccccccccCCCCcccHHHHHHHHhc-CCCCCCccccccc
Q 028627 104 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR 153 (206)
Q Consensus 104 ~~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~-~~~CP~Cr~~~~~ 153 (206)
..++..|+||++.+.+|+.++|||.||..|+..|+.. ...||.||.++..
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3567899999999999999999999999999999976 7799999999864
No 44
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.25 E-value=3e-12 Score=92.87 Aligned_cols=48 Identities=23% Similarity=0.578 Sum_probs=41.9
Q ss_pred ccCcccccccccccc------------------cccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 106 REEECGICLEICCKI------------------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 106 ~~~~C~IC~~~~~~~------------------~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
.+..|+||++.+.++ +.++|||.||..||.+|+..+.+||+||+++..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 567899999998854 347999999999999999999999999998653
No 45
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.25 E-value=9.7e-12 Score=85.25 Aligned_cols=53 Identities=26% Similarity=0.589 Sum_probs=43.3
Q ss_pred cCccCcccccccccc--cccccC--CCCcccHHHHHHHHh-cCCCCCCccccccccCC
Q 028627 104 IEREEECGICLEICC--KIVLPD--CNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVNS 156 (206)
Q Consensus 104 ~~~~~~C~IC~~~~~--~~~~~~--CgH~Fc~~Ci~~w~~-~~~~CP~Cr~~~~~~~~ 156 (206)
.+++..|+||++.+. ++...+ |||.||..|+..++. ....||.||+++...+.
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 467889999999885 445555 999999999999875 47899999999976544
No 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.25 E-value=1.7e-12 Score=100.97 Aligned_cols=49 Identities=29% Similarity=0.676 Sum_probs=44.3
Q ss_pred CccCccccccccccccccc-CCCCcccHHHHHHHHhc-CCCCCCccccccc
Q 028627 105 EREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR 153 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~-~CgH~Fc~~Ci~~w~~~-~~~CP~Cr~~~~~ 153 (206)
.++..|+||++.+.+++.+ +|||.||..||..|+.. ...||.||.++..
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 4567999999999999886 99999999999999997 8899999999853
No 47
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.24 E-value=2.5e-12 Score=82.52 Aligned_cols=46 Identities=22% Similarity=0.486 Sum_probs=41.2
Q ss_pred CccCcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 105 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
.++..|+||++.+.+|+.++|||.||..|+.. ....||+||+++..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc---CCCCCCcCCcEeec
Confidence 46788999999999999999999999999977 36789999998864
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=1.7e-12 Score=95.52 Aligned_cols=53 Identities=23% Similarity=0.464 Sum_probs=45.9
Q ss_pred CccCccccccccccccccc-CCCCcccHHHHHHHHhcCCCCCCccccccccCCCCc
Q 028627 105 EREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDL 159 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~-~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~~ 159 (206)
.++..|+||++.+.+|+.+ +|||.||..||..|+. ..||.||.++....+..+
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n 73 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKIN 73 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCC
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccccccc
Confidence 4578999999999999998 9999999999999987 889999999865444444
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.22 E-value=3.1e-12 Score=84.38 Aligned_cols=49 Identities=24% Similarity=0.604 Sum_probs=44.3
Q ss_pred CccCccccccccccccccc--CCCCc-ccHHHHHHHHhcCCCCCCccccccc
Q 028627 105 EREEECGICLEICCKIVLP--DCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~--~CgH~-Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
+++..|.||++...+++.+ ||||. ||..|+..|...+..||+||+++..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 4567899999999999876 99999 8999999999999999999999863
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.21 E-value=2.7e-12 Score=95.37 Aligned_cols=55 Identities=25% Similarity=0.689 Sum_probs=48.0
Q ss_pred CccCcccccccccccc-------cccCCCCcccHHHHHHHHhcCCCCCCccccccccCCCCc
Q 028627 105 EREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDL 159 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~-------~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~~ 159 (206)
.+...|+||++.+.++ +.++|||.||..|+.+|+...++||.||.++...+...+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceee
Confidence 5678899999999876 778999999999999999999999999999986654433
No 51
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.20 E-value=1.3e-11 Score=102.59 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=46.8
Q ss_pred ccCccCcccccccccccccccCCCCcccHHHHHHHHhc-CCCCCCccccccccCC
Q 028627 103 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRVNS 156 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~-~~~CP~Cr~~~~~~~~ 156 (206)
+...+..|+||++.+.+||+++|||.||..||..|+.. ..+||+||.+++..++
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l 258 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL 258 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGC
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcC
Confidence 34578999999999999999999999999999999986 4559999999875443
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.20 E-value=3.4e-12 Score=97.09 Aligned_cols=51 Identities=20% Similarity=0.462 Sum_probs=45.5
Q ss_pred ccCccCcccccccccccccccCCCCcccHHHHHHHHhcC-CCCCCccccccc
Q 028627 103 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLRR 153 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~-~~CP~Cr~~~~~ 153 (206)
..+++..|+||++.+.+|+.++|||.||..||.+|+... ..||.||.++..
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 456789999999999999999999999999999999865 499999998753
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.17 E-value=8.5e-12 Score=82.00 Aligned_cols=49 Identities=20% Similarity=0.537 Sum_probs=43.7
Q ss_pred CccCccccccccccccccc--CCCCc-ccHHHHHHHHhcCCCCCCccccccc
Q 028627 105 EREEECGICLEICCKIVLP--DCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~--~CgH~-Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
+.+..|.||++...+++.+ ||||. ||..|+..|...+..||+||+++..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 3567899999999988776 99998 9999999999888999999999864
No 54
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.15 E-value=5.3e-12 Score=85.52 Aligned_cols=44 Identities=30% Similarity=0.745 Sum_probs=40.7
Q ss_pred ccCcccccccccccccccCCCCc-ccHHHHHHHHhcCCCCCCccccccc
Q 028627 106 REEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~CgH~-Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
++..|+||++.+.+++.++|||. ||..|+..| ..||+||.++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 46789999999999999999999 999999988 899999999864
No 55
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=1.1e-11 Score=87.89 Aligned_cols=52 Identities=21% Similarity=0.324 Sum_probs=44.1
Q ss_pred CccCcccccccccccccccC-CCCcccHHHHHHHHhcC------CCCCC--cccc-ccccCC
Q 028627 105 EREEECGICLEICCKIVLPD-CNHSMCMRCYRNWRARS------QSCPF--CRDS-LRRVNS 156 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~-CgH~Fc~~Ci~~w~~~~------~~CP~--Cr~~-~~~~~~ 156 (206)
..++.|+||++.+.+|+.++ |||.||..||.+|+... ..||+ |+.. +...++
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L 66 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDL 66 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGE
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhC
Confidence 56789999999999999995 99999999999999853 59999 9876 654433
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.14 E-value=2.1e-11 Score=106.46 Aligned_cols=50 Identities=32% Similarity=0.834 Sum_probs=45.4
Q ss_pred ccCcccccccccccccccCCCCcccHHHHHHHHh-cCCCCCCccccccccC
Q 028627 106 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVN 155 (206)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~-~~~~CP~Cr~~~~~~~ 155 (206)
....|+||++.+.+++.++|||.||..|+..|+. ....||+||.++....
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 3479999999999999999999999999999998 7899999999987543
No 57
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.11 E-value=3.1e-11 Score=95.10 Aligned_cols=56 Identities=13% Similarity=0.032 Sum_probs=48.1
Q ss_pred ccCccCcccccccccccccccCCCCcccHHHHHHHHhc-CCCCCCccccccccCCCC
Q 028627 103 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRVNSGD 158 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~-~~~CP~Cr~~~~~~~~~~ 158 (206)
....++.||||++.+.+||.++|||.||..||..|+.. ..+||+|+.++...++.+
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~p 158 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIP 158 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEE
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcc
Confidence 44678999999999999999999999999999999986 457999999987554433
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.09 E-value=3.7e-11 Score=93.65 Aligned_cols=52 Identities=27% Similarity=0.529 Sum_probs=46.2
Q ss_pred ccCccCcccccccccccccccCCCCcccHHHHHHHHhc-CCCCCCcccccccc
Q 028627 103 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRV 154 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~-~~~CP~Cr~~~~~~ 154 (206)
...+++.|+||++.+.+|+.++|||.||..|+.+|+.. ...||.||.++...
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 44678999999999999999999999999999999985 45999999988653
No 59
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.08 E-value=1.3e-11 Score=90.99 Aligned_cols=48 Identities=23% Similarity=0.578 Sum_probs=1.0
Q ss_pred ccCcccccccccccc------------------cccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 106 REEECGICLEICCKI------------------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 106 ~~~~C~IC~~~~~~~------------------~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
.+..|+||++.+.++ +.++|||.||..||.+|+..+.+||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 457999999998752 235899999999999999999999999998653
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=4.9e-11 Score=80.84 Aligned_cols=44 Identities=30% Similarity=0.757 Sum_probs=39.2
Q ss_pred ccCcccccccccccccccCCCCc-ccHHHHHHHHhcCCCCCCccccccc
Q 028627 106 REEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~CgH~-Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
++..|+||++.+.+++.++|||. ||..|+.. ...||+||.++..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 45689999999999999999999 99999954 4899999999874
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2.2e-10 Score=76.34 Aligned_cols=45 Identities=31% Similarity=0.804 Sum_probs=40.5
Q ss_pred CccCcccccccccccccccCCCCc-ccHHHHHHHHhcCCCCCCccccccc
Q 028627 105 EREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~CgH~-Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
.++..|.||++...+++++||||. ||..|+.. ...||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 457899999999999999999999 99999984 5899999999874
No 62
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=3.5e-10 Score=77.79 Aligned_cols=49 Identities=20% Similarity=0.560 Sum_probs=41.3
Q ss_pred CccCcccccccccc--cccccCCC-----CcccHHHHHHHHhcC--CCCCCccccccc
Q 028627 105 EREEECGICLEICC--KIVLPDCN-----HSMCMRCYRNWRARS--QSCPFCRDSLRR 153 (206)
Q Consensus 105 ~~~~~C~IC~~~~~--~~~~~~Cg-----H~Fc~~Ci~~w~~~~--~~CP~Cr~~~~~ 153 (206)
.++..|.||++.+. ++.++||+ |.||..||.+|+..+ .+||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 45679999998875 45678996 999999999999864 599999998863
No 63
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.94 E-value=1.9e-10 Score=95.16 Aligned_cols=59 Identities=19% Similarity=0.225 Sum_probs=49.2
Q ss_pred cCccCcccccccccccccc-cCCCCcccHHHHHHHHhcC--CCCCC--ccccccccCCCCcccc
Q 028627 104 IEREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARS--QSCPF--CRDSLRRVNSGDLWIY 162 (206)
Q Consensus 104 ~~~~~~C~IC~~~~~~~~~-~~CgH~Fc~~Ci~~w~~~~--~~CP~--Cr~~~~~~~~~~~~~~ 162 (206)
...+..||||++.+.+||. +.|||.||..||..|+..+ ..||. |+..+...++..++..
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L 241 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIM 241 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHH
Confidence 4567999999999999998 4999999999999999753 68999 9999876666555443
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.94 E-value=1.1e-10 Score=80.11 Aligned_cols=45 Identities=31% Similarity=0.696 Sum_probs=40.2
Q ss_pred ccCcccccccccccccccCCCCc-ccHHHHHHHHhcCCCCCCcccccccc
Q 028627 106 REEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRRV 154 (206)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~CgH~-Fc~~Ci~~w~~~~~~CP~Cr~~~~~~ 154 (206)
++..|+||++...+++.+||||. ||..|+..| ..||+||.++...
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 45689999999999999999999 999999876 4999999999753
No 65
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=1.3e-09 Score=73.77 Aligned_cols=50 Identities=20% Similarity=0.499 Sum_probs=41.9
Q ss_pred CccCccccccccccccc-ccCCCCcccHHHHHHHHhcC--CCCCCcccccccc
Q 028627 105 EREEECGICLEICCKIV-LPDCNHSMCMRCYRNWRARS--QSCPFCRDSLRRV 154 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~-~~~CgH~Fc~~Ci~~w~~~~--~~CP~Cr~~~~~~ 154 (206)
+...+|+||.+.+.... ...|+|.||..||.+|+..+ .+||+||.+....
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 45579999999998543 34899999999999999876 8999999987643
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.81 E-value=1e-09 Score=71.54 Aligned_cols=52 Identities=12% Similarity=0.122 Sum_probs=45.9
Q ss_pred cCccccccccccccccc-CCCCcccHHHHHHHHhcCCCCCCccccccccCCCC
Q 028627 107 EEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGD 158 (206)
Q Consensus 107 ~~~C~IC~~~~~~~~~~-~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~ 158 (206)
...|+||++.+.+|+.+ +|||.|+..||.+|+.++.+||+.+.++...++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 55 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEE
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEE
Confidence 46799999999999998 99999999999999998888999999997655543
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.76 E-value=9.9e-10 Score=94.89 Aligned_cols=45 Identities=27% Similarity=0.846 Sum_probs=41.1
Q ss_pred CccCcccccccccccccccCCCCc-ccHHHHHHHHhcCCCCCCccccccc
Q 028627 105 EREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~CgH~-Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
.++..|+||++.+.+++.+||||. ||..|+..| ..||+||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 356899999999999999999999 999999988 799999999864
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.70 E-value=5.7e-09 Score=73.46 Aligned_cols=45 Identities=22% Similarity=0.590 Sum_probs=37.5
Q ss_pred ccCccccccccccccccc---CCCCcccHHHHHHHHhc--------CCCCCC--cccc
Q 028627 106 REEECGICLEICCKIVLP---DCNHSMCMRCYRNWRAR--------SQSCPF--CRDS 150 (206)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~---~CgH~Fc~~Ci~~w~~~--------~~~CP~--Cr~~ 150 (206)
+..+|+||++.+..+..+ +|||.||..|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 567899999999876543 79999999999998862 248999 9987
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.57 E-value=1.2e-08 Score=87.40 Aligned_cols=48 Identities=25% Similarity=0.599 Sum_probs=39.4
Q ss_pred CccCccccccccccc-cc-------ccCCCCcccHHHHHHHHhcC-----------CCCCCcccccc
Q 028627 105 EREEECGICLEICCK-IV-------LPDCNHSMCMRCYRNWRARS-----------QSCPFCRDSLR 152 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~-~~-------~~~CgH~Fc~~Ci~~w~~~~-----------~~CP~Cr~~~~ 152 (206)
+...+|+||++.+.+ .. .+.|||.||..|+.+|+.+. ..||.||++++
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 466799999998875 21 24799999999999999742 57999999886
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.45 E-value=1.9e-07 Score=60.48 Aligned_cols=48 Identities=21% Similarity=0.461 Sum_probs=39.8
Q ss_pred CccCcccccccccccccccCCC--C---cccHHHHHHHHhc--CCCCCCcccccc
Q 028627 105 EREEECGICLEICCKIVLPDCN--H---SMCMRCYRNWRAR--SQSCPFCRDSLR 152 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~Cg--H---~Fc~~Ci~~w~~~--~~~CP~Cr~~~~ 152 (206)
+++..|.||++...++...||. | .||..|+.+|+.. +.+||+|+.++.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4567899999987677778865 4 7999999999973 689999998865
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.36 E-value=2.1e-07 Score=65.75 Aligned_cols=47 Identities=23% Similarity=0.494 Sum_probs=39.7
Q ss_pred ccccccccccc-ccccCCCCcccHHHHHHHHh-cCCCCCCccccccccC
Q 028627 109 ECGICLEICCK-IVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVN 155 (206)
Q Consensus 109 ~C~IC~~~~~~-~~~~~CgH~Fc~~Ci~~w~~-~~~~CP~Cr~~~~~~~ 155 (206)
.|++|--.+.. +...||+|.||.+|+..|.+ +.+.||.|+.++..+.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 58889888774 56789999999999999985 5799999999997543
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.63 E-value=4.7e-05 Score=62.33 Aligned_cols=51 Identities=20% Similarity=0.452 Sum_probs=41.1
Q ss_pred ccCccccccccccccc-ccCCCCcccHHHHHHHHhc--CCCCCCccccccccCC
Q 028627 106 REEECGICLEICCKIV-LPDCNHSMCMRCYRNWRAR--SQSCPFCRDSLRRVNS 156 (206)
Q Consensus 106 ~~~~C~IC~~~~~~~~-~~~CgH~Fc~~Ci~~w~~~--~~~CP~Cr~~~~~~~~ 156 (206)
.-..|.||.+...... ...|+|.||..|+..|+.. ...||.|+.+.....+
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 3578999999988654 3569999999999999975 4599999997765433
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.38 E-value=0.0015 Score=45.78 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=27.5
Q ss_pred ccCcccccccc-cccccc--cCCCCcccHHHHHHHH
Q 028627 106 REEECGICLEI-CCKIVL--PDCNHSMCMRCYRNWR 138 (206)
Q Consensus 106 ~~~~C~IC~~~-~~~~~~--~~CgH~Fc~~Ci~~w~ 138 (206)
++..|+||.+. +.+++. +.|+|.||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 35789999976 667777 8999999999999843
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.14 E-value=0.029 Score=38.86 Aligned_cols=48 Identities=27% Similarity=0.554 Sum_probs=39.1
Q ss_pred cCccCcccccccccccccccCC-CCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 104 IEREEECGICLEICCKIVLPDC-NHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 104 ~~~~~~C~IC~~~~~~~~~~~C-gH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
.-+-..|..|+-... -+..| .|..|..|+...+..+..||+|..++..
T Consensus 25 ~~G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CSCCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred ccCcccChhhccccC--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 345688999987665 34456 5889999999999999999999999853
No 75
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=94.08 E-value=0.031 Score=53.70 Aligned_cols=57 Identities=14% Similarity=0.063 Sum_probs=49.2
Q ss_pred ccCccCcccccccccccccccCCC-CcccHHHHHHHHhcCCCCCCccccccccCCCCc
Q 028627 103 DIEREEECGICLEICCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDL 159 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~~~~~Cg-H~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~~ 159 (206)
+..++..|||-.+.+.+||+++-| +.+-..+|.+|+..+.+||+=|.+++.....++
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN 944 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPN 944 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEEC
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccccccc
Confidence 335789999999999999999998 589999999999999999999999886544443
No 76
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.83 E-value=0.14 Score=34.45 Aligned_cols=35 Identities=26% Similarity=0.515 Sum_probs=29.8
Q ss_pred CccCcccccccccccccccCC----CCcccHHHHHHHHh
Q 028627 105 EREEECGICLEICCKIVLPDC----NHSMCMRCYRNWRA 139 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~C----gH~Fc~~Ci~~w~~ 139 (206)
...+.|.+|.+.+.+.-...| +|.||..|-+...+
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 567899999999998766666 78999999999887
No 77
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=84.42 E-value=0.72 Score=29.67 Aligned_cols=46 Identities=17% Similarity=0.408 Sum_probs=32.1
Q ss_pred ccCcccccccccccccccCCCCcccHHHHHHHHhc----CCCCCCccccc
Q 028627 106 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR----SQSCPFCRDSL 151 (206)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~----~~~CP~Cr~~~ 151 (206)
....|.||.+.-.-..--.|...||..|+.+.+.. .-.||.|+...
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 45679999864321122368889999999877664 34799997653
No 78
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=83.46 E-value=0.83 Score=28.81 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=30.9
Q ss_pred Cccccccccccccc---ccCCCCcccHHHHHHHHhcCCCCCCc
Q 028627 108 EECGICLEICCKIV---LPDCNHSMCMRCYRNWRARSQSCPFC 147 (206)
Q Consensus 108 ~~C~IC~~~~~~~~---~~~CgH~Fc~~Ci~~w~~~~~~CP~C 147 (206)
..|--|...+.+.. -..|++.||.+|=.=..+....||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 45999998886543 46899999999955445567899988
No 79
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=80.57 E-value=4.9 Score=27.41 Aligned_cols=48 Identities=27% Similarity=0.725 Sum_probs=36.3
Q ss_pred ccCcccccccccc---c--c--cccCCCCcccHHHHHH-HHhcCCCCCCccccccc
Q 028627 106 REEECGICLEICC---K--I--VLPDCNHSMCMRCYRN-WRARSQSCPFCRDSLRR 153 (206)
Q Consensus 106 ~~~~C~IC~~~~~---~--~--~~~~CgH~Fc~~Ci~~-w~~~~~~CP~Cr~~~~~ 153 (206)
....|.||-+..- + + ..-.|+-..|..|..- ....+..||.|+.+..+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 4578999999854 1 1 2236788889999965 45579999999998864
No 80
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=80.38 E-value=1.1 Score=30.12 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=27.5
Q ss_pred CcccccCccCcccccccccccc----cccCCCCcccHHHHHH
Q 028627 99 LSEIDIEREEECGICLEICCKI----VLPDCNHSMCMRCYRN 136 (206)
Q Consensus 99 ~~~~~~~~~~~C~IC~~~~~~~----~~~~CgH~Fc~~Ci~~ 136 (206)
..+.+..+...|.+|...|.-. --..||+.||..|...
T Consensus 13 ~~W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 13 GYWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp SCCCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CccccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3454556678999999998732 2357999999999643
No 81
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=79.85 E-value=1.1 Score=34.34 Aligned_cols=47 Identities=21% Similarity=0.471 Sum_probs=31.0
Q ss_pred ccCcccccccccccccccCCCCcccHHHHHHHHhc----CCCCCCcccccc
Q 028627 106 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR----SQSCPFCRDSLR 152 (206)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~----~~~CP~Cr~~~~ 152 (206)
.+..|.+|.+.-.-...-.|.-.||..|+.+-+.. .-.||.|+..-.
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 45679999865221122357788999998665443 356999987543
No 82
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=79.09 E-value=1.8 Score=31.31 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=24.9
Q ss_pred ccccCccCcccccccccccc----cccCCCCcccHHHH
Q 028627 101 EIDIEREEECGICLEICCKI----VLPDCNHSMCMRCY 134 (206)
Q Consensus 101 ~~~~~~~~~C~IC~~~~~~~----~~~~CgH~Fc~~Ci 134 (206)
+.+......|.+|...|.-. ..-.||+.||..|.
T Consensus 63 W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs 100 (125)
T 1joc_A 63 WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECS 100 (125)
T ss_dssp CCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGS
T ss_pred cccCCCCCCCcCcCCccccccccccCCCCCeEEChHHh
Confidence 33434557899999988732 33579999999995
No 83
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=77.95 E-value=0.93 Score=30.29 Aligned_cols=35 Identities=17% Similarity=0.418 Sum_probs=24.6
Q ss_pred ccccCccCcccccccccccc----cccCCCCcccHHHHH
Q 028627 101 EIDIEREEECGICLEICCKI----VLPDCNHSMCMRCYR 135 (206)
Q Consensus 101 ~~~~~~~~~C~IC~~~~~~~----~~~~CgH~Fc~~Ci~ 135 (206)
+.+..+...|.+|...|.-. --..||..||..|..
T Consensus 13 W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 13 WLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp --CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred cccCccCCcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 33445567899999988732 235799999999964
No 84
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=76.93 E-value=1.1 Score=35.17 Aligned_cols=47 Identities=21% Similarity=0.419 Sum_probs=31.9
Q ss_pred CccCcccccccccccccccCCCCcccHHHHHHHHhc----CCCCCCccccc
Q 028627 105 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR----SQSCPFCRDSL 151 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~----~~~CP~Cr~~~ 151 (206)
..+..|.+|.+.-.-...-.|...||..|+.+-+.. .-.||.|+..-
T Consensus 5 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 355679999865332222368888999998765543 35799998754
No 85
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=76.06 E-value=3.7 Score=35.30 Aligned_cols=50 Identities=16% Similarity=0.328 Sum_probs=36.1
Q ss_pred CccCcccccccccccccc-cCCCCcccHHH--HHHHHh--cCCCCCCcccccccc
Q 028627 105 EREEECGICLEICCKIVL-PDCNHSMCMRC--YRNWRA--RSQSCPFCRDSLRRV 154 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~-~~CgH~Fc~~C--i~~w~~--~~~~CP~Cr~~~~~~ 154 (206)
.-.+.||+-...+..|+. ..|.|.-|.+- +..... ..-.||+|.+.+...
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHH
Confidence 456899999999998866 68999866554 223222 367899999887543
No 86
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=74.20 E-value=1.9 Score=29.31 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=25.5
Q ss_pred ccccCccCcccccccccccc----cccCCCCcccHHHHHH
Q 028627 101 EIDIEREEECGICLEICCKI----VLPDCNHSMCMRCYRN 136 (206)
Q Consensus 101 ~~~~~~~~~C~IC~~~~~~~----~~~~CgH~Fc~~Ci~~ 136 (206)
+....+...|.+|...|.-. .-..||+.||..|...
T Consensus 14 W~~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 14 WVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CcccccCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 33334567899999988722 3357999999999643
No 87
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.59 E-value=2.1 Score=28.62 Aligned_cols=35 Identities=20% Similarity=0.516 Sum_probs=25.5
Q ss_pred cccccCccCcccccccccccc----cccCCCCcccHHHH
Q 028627 100 SEIDIEREEECGICLEICCKI----VLPDCNHSMCMRCY 134 (206)
Q Consensus 100 ~~~~~~~~~~C~IC~~~~~~~----~~~~CgH~Fc~~Ci 134 (206)
.+.+..+...|.+|...|.-. --..||..||..|.
T Consensus 7 ~W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 7 GRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CSCSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred ccccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 344445667899999988632 22579999999994
No 88
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=70.66 E-value=2.4 Score=26.56 Aligned_cols=45 Identities=22% Similarity=0.511 Sum_probs=29.9
Q ss_pred CccCcccccccccccccccCCCCcccHHHHHHHHh----cCCCCCCccc
Q 028627 105 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRD 149 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~----~~~~CP~Cr~ 149 (206)
..+..|.+|.+.-.-..--.|...||..|+..-+. ..-.||.|+.
T Consensus 9 ~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 56678999987421111235777899999976443 2457999865
No 89
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=67.64 E-value=3 Score=32.25 Aligned_cols=45 Identities=16% Similarity=0.367 Sum_probs=29.4
Q ss_pred cCcccccccccccccccCCCCcccHHHHHHHHh----cCCCCCCccccc
Q 028627 107 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL 151 (206)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~----~~~~CP~Cr~~~ 151 (206)
+..|.+|.+.-.-...-.|...||..|+.+=+. +.-.||.|+..-
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 346999986533222235777899999865443 244799998764
No 90
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=66.36 E-value=1.4 Score=27.63 Aligned_cols=46 Identities=20% Similarity=0.377 Sum_probs=29.6
Q ss_pred CccCcccccccccccccccCCCCcccHHHHHHHHhc----CCCCCCcccc
Q 028627 105 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR----SQSCPFCRDS 150 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~----~~~CP~Cr~~ 150 (206)
..+..|.+|.+.-.-..--.|...||..|+.+-+.. .-.||.|+..
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 456789999864221112357778999998754332 3469999764
No 91
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=65.96 E-value=8.3 Score=26.01 Aligned_cols=33 Identities=18% Similarity=0.458 Sum_probs=23.3
Q ss_pred CccCcccccccccccccc--cCCCCcccHHHHHHH
Q 028627 105 EREEECGICLEICCKIVL--PDCNHSMCMRCYRNW 137 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~--~~CgH~Fc~~Ci~~w 137 (206)
..+..|.||-..-.+... .-|+-.||..|+.+.
T Consensus 13 ~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccccccccceeccccccccccHhhcccc
Confidence 467899999754332211 237889999999986
No 92
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=65.55 E-value=0.52 Score=31.45 Aligned_cols=19 Identities=21% Similarity=0.871 Sum_probs=15.7
Q ss_pred CCCCcccHHHHHHHHhcCCCC
Q 028627 124 DCNHSMCMRCYRNWRARSQSC 144 (206)
Q Consensus 124 ~CgH~Fc~~Ci~~w~~~~~~C 144 (206)
.|||.||..|...|.. ..|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 6999999999988855 455
No 93
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=64.23 E-value=1.1 Score=28.22 Aligned_cols=33 Identities=24% Similarity=0.666 Sum_probs=22.3
Q ss_pred cCcccccccccccc-----cc-cC--CCCcccHHHHHHHHh
Q 028627 107 EEECGICLEICCKI-----VL-PD--CNHSMCMRCYRNWRA 139 (206)
Q Consensus 107 ~~~C~IC~~~~~~~-----~~-~~--CgH~Fc~~Ci~~w~~ 139 (206)
...||-|...+... +. .. |+|.||..|..+|..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 34788888777632 22 23 888888888877754
No 94
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=64.18 E-value=1.4 Score=38.04 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=0.0
Q ss_pred ccCccCccccccccccc----ccccCCCCcccHHHHHHHHh-------cCCCCCCccccc
Q 028627 103 DIEREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRA-------RSQSCPFCRDSL 151 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~----~~~~~CgH~Fc~~Ci~~w~~-------~~~~CP~Cr~~~ 151 (206)
.......|..|...|.- -....||+.||..|...... ....|-.|-..+
T Consensus 371 ~~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 371 PVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ------------------------------------------------------------
T ss_pred CcccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 33456789999998872 23357999999999865432 135566665544
No 95
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=62.45 E-value=3.9 Score=26.46 Aligned_cols=28 Identities=18% Similarity=0.457 Sum_probs=21.7
Q ss_pred cCcccccccccccc----cccCCCCcccHHHH
Q 028627 107 EEECGICLEICCKI----VLPDCNHSMCMRCY 134 (206)
Q Consensus 107 ~~~C~IC~~~~~~~----~~~~CgH~Fc~~Ci 134 (206)
+..|.+|...|.-. --..||+.||..|.
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs 42 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHS 42 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGS
T ss_pred CCcccCCCCccCCccccccCCCCCEEEccccc
Confidence 45899999988732 22579999999995
No 96
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=62.28 E-value=0.67 Score=33.56 Aligned_cols=47 Identities=21% Similarity=0.494 Sum_probs=29.9
Q ss_pred CccCcccccccccccc----cccCCCCcccHHHHHHHHhcCCCCCCccccc
Q 028627 105 EREEECGICLEICCKI----VLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 151 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~----~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~ 151 (206)
.....|..|...|.-. ....||..||..|..........|-.|-..+
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 4556899999988732 3357999999999765544466777775543
No 97
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=62.17 E-value=6.8 Score=33.54 Aligned_cols=49 Identities=14% Similarity=0.237 Sum_probs=35.4
Q ss_pred CccCcccccccccccccc-cCCCCcccHHHH--HHHHh--cCCCCCCccccccc
Q 028627 105 EREEECGICLEICCKIVL-PDCNHSMCMRCY--RNWRA--RSQSCPFCRDSLRR 153 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~-~~CgH~Fc~~Ci--~~w~~--~~~~CP~Cr~~~~~ 153 (206)
.-.+.||+-...+..|+. ..|.|.-|.+-. ..... ..-.||+|.+.+..
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 456889999999998866 689998665532 22222 35789999998763
No 98
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.37 E-value=3.3 Score=32.90 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=23.7
Q ss_pred CccCcccccccccccc----cccCCCCcccHHHHH
Q 028627 105 EREEECGICLEICCKI----VLPDCNHSMCMRCYR 135 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~----~~~~CgH~Fc~~Ci~ 135 (206)
.+...|.+|...|.-- ....||+.||..|..
T Consensus 162 ~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 162 VDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred ccCCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 4557999999988722 335799999999964
No 99
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=59.66 E-value=3.2 Score=32.72 Aligned_cols=31 Identities=16% Similarity=0.373 Sum_probs=23.4
Q ss_pred CccCcccccccccccc----cccCCCCcccHHHHH
Q 028627 105 EREEECGICLEICCKI----VLPDCNHSMCMRCYR 135 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~----~~~~CgH~Fc~~Ci~ 135 (206)
.++..|.+|...|.-. -...||+.||..|..
T Consensus 159 ~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 3467999999988722 335799999999853
No 100
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=59.34 E-value=4.7 Score=29.54 Aligned_cols=30 Identities=27% Similarity=0.689 Sum_probs=21.8
Q ss_pred CccCcccccccccc-----cccccCCCCcccHHHH
Q 028627 105 EREEECGICLEICC-----KIVLPDCNHSMCMRCY 134 (206)
Q Consensus 105 ~~~~~C~IC~~~~~-----~~~~~~CgH~Fc~~Ci 134 (206)
.++..|.+|...+. ......|.|.+|..|-
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 46789999999884 1244578888888774
No 101
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=58.70 E-value=4.7 Score=38.03 Aligned_cols=49 Identities=24% Similarity=0.560 Sum_probs=37.5
Q ss_pred CccCcccccccccccc----------cccCCCCcc--------------------cHHHHHHHHh--------cCCCCCC
Q 028627 105 EREEECGICLEICCKI----------VLPDCNHSM--------------------CMRCYRNWRA--------RSQSCPF 146 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~----------~~~~CgH~F--------------------c~~Ci~~w~~--------~~~~CP~ 146 (206)
.+--.|+-|+.++.+| ..+.||-.| |..|..++-. +...||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 4567899999988764 335677776 9999999976 3568999
Q ss_pred ccccccc
Q 028627 147 CRDSLRR 153 (206)
Q Consensus 147 Cr~~~~~ 153 (206)
|--.+..
T Consensus 184 CGP~l~l 190 (772)
T 4g9i_A 184 CGPSYRL 190 (772)
T ss_dssp TSCCEEE
T ss_pred CCceEEE
Confidence 9776643
No 102
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=58.60 E-value=2.4 Score=29.79 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=18.4
Q ss_pred cccccCCCCcccHHHHHHHHhcCCCCCCccccc
Q 028627 119 KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 151 (206)
Q Consensus 119 ~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~ 151 (206)
.+....||+.|+ .-+.....||.|+..-
T Consensus 67 p~~C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 67 PAQCRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp CCBBTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred CcChhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 344567999992 1223468899998753
No 103
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.00 E-value=0.85 Score=28.11 Aligned_cols=44 Identities=18% Similarity=0.456 Sum_probs=26.3
Q ss_pred CccCcccccccccccccccCCCCcccHHHHHHHHhc----CCCCCCcc
Q 028627 105 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR----SQSCPFCR 148 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~----~~~CP~Cr 148 (206)
..+..|.+|.+.-.-..--.|...||..|+.+-+.. .-.||.|.
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 456789999875221112357778999988653332 23466664
No 104
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=57.44 E-value=4.8 Score=37.25 Aligned_cols=47 Identities=23% Similarity=0.587 Sum_probs=34.7
Q ss_pred CccCcccccccccccc----------cccCCCCcc--------------------cHHHHHHHHh--------cCCCCCC
Q 028627 105 EREEECGICLEICCKI----------VLPDCNHSM--------------------CMRCYRNWRA--------RSQSCPF 146 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~----------~~~~CgH~F--------------------c~~Ci~~w~~--------~~~~CP~ 146 (206)
.+--.|+-|+.++.+| ..+.||-.| |..|..++-. +...||.
T Consensus 15 pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~ 94 (657)
T 3ttc_A 15 PDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPE 94 (657)
T ss_dssp CCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCcc
Confidence 3556888888877654 334666666 9999999876 3578999
Q ss_pred ccccc
Q 028627 147 CRDSL 151 (206)
Q Consensus 147 Cr~~~ 151 (206)
|--.+
T Consensus 95 CGP~l 99 (657)
T 3ttc_A 95 CGPYL 99 (657)
T ss_dssp TSCCE
T ss_pred cCccc
Confidence 97666
No 105
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=57.23 E-value=4.3 Score=28.19 Aligned_cols=12 Identities=25% Similarity=0.977 Sum_probs=10.8
Q ss_pred cccHHHHHHHHh
Q 028627 128 SMCMRCYRNWRA 139 (206)
Q Consensus 128 ~Fc~~Ci~~w~~ 139 (206)
.||..|+..|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999986
No 106
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=57.11 E-value=4.3 Score=28.23 Aligned_cols=12 Identities=33% Similarity=1.082 Sum_probs=10.8
Q ss_pred cccHHHHHHHHh
Q 028627 128 SMCMRCYRNWRA 139 (206)
Q Consensus 128 ~Fc~~Ci~~w~~ 139 (206)
.||..|+.+|..
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999986
No 107
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.09 E-value=10 Score=24.47 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=31.9
Q ss_pred ccCcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 106 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
....|+-|...+....+..-|..||..| +.|-.|+.+|..
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIIDEQPLIFKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCCSCCCCCSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCCCccCCCEecceEEEECcceeCCCC--------CEeCCCCCccCC
Confidence 3468999999888666666788888877 789999998874
No 108
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=56.27 E-value=23 Score=25.65 Aligned_cols=45 Identities=22% Similarity=0.474 Sum_probs=30.7
Q ss_pred CccCcccccccccccccccCCCCcccHHHHHHHH-----------hcCCCCCCccc
Q 028627 105 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWR-----------ARSQSCPFCRD 149 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~-----------~~~~~CP~Cr~ 149 (206)
..+..|.+|.+.-.-.---.|-..||..|+.+-+ ...=.|+.|+.
T Consensus 55 g~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4566799998763322223688899999998742 12357999954
No 109
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=55.62 E-value=1.1 Score=37.70 Aligned_cols=46 Identities=20% Similarity=0.431 Sum_probs=35.9
Q ss_pred CccCccccccccccccccc----CCC--CcccHHHHHHHHhcCCCCCCcccc
Q 028627 105 EREEECGICLEICCKIVLP----DCN--HSMCMRCYRNWRARSQSCPFCRDS 150 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~----~Cg--H~Fc~~Ci~~w~~~~~~CP~Cr~~ 150 (206)
.....||+|-....-.++. .=| |.+|..|-.+|......||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4578999999987654432 245 468999999999999999999875
No 110
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.21 E-value=7.5 Score=24.71 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=28.5
Q ss_pred CcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 028627 108 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 152 (206)
Q Consensus 108 ~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~ 152 (206)
..|+-|...+...++..-|..||.+| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 46888888877666666777888877 78888888875
No 111
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=55.07 E-value=2.8 Score=27.19 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=31.8
Q ss_pred CccCcccccccccccccc---cCCCCcccHHHHHHHHh----cCCCCCCcccccc
Q 028627 105 EREEECGICLEICCKIVL---PDCNHSMCMRCYRNWRA----RSQSCPFCRDSLR 152 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~---~~CgH~Fc~~Ci~~w~~----~~~~CP~Cr~~~~ 152 (206)
.+...|.+|......... -.|.-.||..|+..-.. ..-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 345679999876543222 25777899999854333 2457999987654
No 112
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=55.04 E-value=4.9 Score=23.85 Aligned_cols=41 Identities=24% Similarity=0.567 Sum_probs=25.5
Q ss_pred cccccccccccccc---cCCCCcccHHHHHHHHhc----CCCCCCccc
Q 028627 109 ECGICLEICCKIVL---PDCNHSMCMRCYRNWRAR----SQSCPFCRD 149 (206)
Q Consensus 109 ~C~IC~~~~~~~~~---~~CgH~Fc~~Ci~~w~~~----~~~CP~Cr~ 149 (206)
.|.+|...-....+ -.|...||..|+.+=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 47778764332222 257788999999653332 345888864
No 113
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=54.94 E-value=13 Score=27.44 Aligned_cols=45 Identities=22% Similarity=0.480 Sum_probs=31.6
Q ss_pred CccCcccccccccccccccCCCCcccHHHHHHHHh-----------cCCCCCCccc
Q 028627 105 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-----------RSQSCPFCRD 149 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~-----------~~~~CP~Cr~ 149 (206)
..+..|.+|.+.=.-..--.|-..||..|+.+-+. ..-.||.|+.
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 45688999988544222236888999999986542 2457999964
No 114
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.56 E-value=7.8 Score=24.92 Aligned_cols=41 Identities=15% Similarity=0.328 Sum_probs=32.3
Q ss_pred CccCcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 105 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
.....|+-|.+.+...++..-+..||..| +.|-.|+.+|..
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLRDRHRHPEC--------YVCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECSSCEECTTT--------TSCSSSCCCHHH
T ss_pred CCCCccccCCCCccCcEEEECcceeCcCc--------CeeCCCCCCCCC
Confidence 34568999999888666666788888888 689999998853
No 115
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=54.45 E-value=7 Score=24.07 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=29.6
Q ss_pred cCcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 107 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
...|+-|...+....+..-|..||..| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCCcccCCEecceEEEECccccccCc--------CEECCCCCCCCC
Confidence 357889988887555555677888877 789999988763
No 116
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=53.23 E-value=5 Score=27.08 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=23.7
Q ss_pred CccCcccccccccccc----cccCCCCcccHHHHHH
Q 028627 105 EREEECGICLEICCKI----VLPDCNHSMCMRCYRN 136 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~----~~~~CgH~Fc~~Ci~~ 136 (206)
.+...|.+|...|.-. --..||+.||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3456899999988732 2357999999999643
No 117
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=53.06 E-value=5.7 Score=37.38 Aligned_cols=48 Identities=23% Similarity=0.496 Sum_probs=36.2
Q ss_pred CccCcccccccccccc----------cccCCCCcc--------------------cHHHHHHHHh--------cCCCCCC
Q 028627 105 EREEECGICLEICCKI----------VLPDCNHSM--------------------CMRCYRNWRA--------RSQSCPF 146 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~----------~~~~CgH~F--------------------c~~Ci~~w~~--------~~~~CP~ 146 (206)
.+--.|+-|+.++.+| ..+.||-.| |..|..++-. +...||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 4557899999988764 335677554 9999999876 3578999
Q ss_pred cccccc
Q 028627 147 CRDSLR 152 (206)
Q Consensus 147 Cr~~~~ 152 (206)
|--.+.
T Consensus 189 CGP~l~ 194 (761)
T 3vth_A 189 CGPSLS 194 (761)
T ss_dssp TSCCEE
T ss_pred cCCeeE
Confidence 977664
No 118
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=52.30 E-value=11 Score=24.71 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=32.4
Q ss_pred CccCcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 105 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
.....|.-|.+.+...++..-+..||..| +.|-.|+.+|..
T Consensus 23 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVVKARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCCSCCEESSSCEECTTT--------CCCSSSCCCTTT
T ss_pred CcCCCcccCCCEecccEEEECCceECccC--------CEecCCCCCCCC
Confidence 34568999999888766666788888888 789999998864
No 119
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.23 E-value=7.7 Score=24.20 Aligned_cols=40 Identities=25% Similarity=0.530 Sum_probs=29.4
Q ss_pred cCcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCcccccccc
Q 028627 107 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 154 (206)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~ 154 (206)
...|.-|...+...++..-|..||.+| ..|-.|+.+|...
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPEC--------FRCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTT--------SBCSSSCCBCSSS
T ss_pred CCcCccCCCEecceEEEECcccccccC--------CEeCCCCCcCCCC
Confidence 457888888877655555677778777 6888998887643
No 120
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.74 E-value=12 Score=23.27 Aligned_cols=39 Identities=21% Similarity=0.373 Sum_probs=29.6
Q ss_pred cCcccccccccc--cccccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 107 EEECGICLEICC--KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 107 ~~~C~IC~~~~~--~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
...|+-|...+. +.++..-|..||..| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEEECccccCccc--------CeECCCCCcCCC
Confidence 357999999887 345555688888887 789999888764
No 121
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=51.22 E-value=6.1 Score=29.62 Aligned_cols=29 Identities=24% Similarity=0.600 Sum_probs=23.0
Q ss_pred ccCcccccccccc-----cccccCCCCcccHHHH
Q 028627 106 REEECGICLEICC-----KIVLPDCNHSMCMRCY 134 (206)
Q Consensus 106 ~~~~C~IC~~~~~-----~~~~~~CgH~Fc~~Ci 134 (206)
.+..|.+|...|. ......|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 5789999999865 2244689999999996
No 122
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.15 E-value=7.9 Score=25.59 Aligned_cols=40 Identities=18% Similarity=0.359 Sum_probs=31.8
Q ss_pred ccCcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 106 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
....|+-|-..+....+..-|..||..| +.|-.|+.+|..
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEecceEEEECCccccccC--------CccCCCCCCCCC
Confidence 4568999999887666666788888887 789999998874
No 123
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.60 E-value=8.8 Score=24.67 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=29.4
Q ss_pred CcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 028627 108 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 152 (206)
Q Consensus 108 ~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~ 152 (206)
..|+.|.+.+.+..+..-+..||..| ..|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAGEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCCSCCBCCTTCCBCTTS--------CBCTTTCCBCC
T ss_pred CcCccCCCCcCceEEEECCceecccc--------CCccCCCCccC
Confidence 47999998888666666678888877 78999998885
No 124
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.43 E-value=9.6 Score=23.67 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=27.5
Q ss_pred CcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 028627 108 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 152 (206)
Q Consensus 108 ~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~ 152 (206)
..|+-|...+....+..-|..||..| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCcccCCeeccceEEECccccCCCC--------CccCCCCCcCC
Confidence 46888888777555555677788777 68888888875
No 125
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.18 E-value=12 Score=23.34 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=28.5
Q ss_pred cCccccccccccc----ccccCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 028627 107 EEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 152 (206)
Q Consensus 107 ~~~C~IC~~~~~~----~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~ 152 (206)
...|+-|-..+.. .++..-|..||..| ..|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCccc--------CEeccCCCcCC
Confidence 4578889888774 44445677888877 78999988876
No 126
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=46.55 E-value=2.5 Score=26.49 Aligned_cols=46 Identities=22% Similarity=0.470 Sum_probs=29.9
Q ss_pred CccCccccccccccc-ccc---cCCCCcccHHHHHHHHh-----cCCCCCCcccc
Q 028627 105 EREEECGICLEICCK-IVL---PDCNHSMCMRCYRNWRA-----RSQSCPFCRDS 150 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~-~~~---~~CgH~Fc~~Ci~~w~~-----~~~~CP~Cr~~ 150 (206)
.+...|++|.....+ ... -.|...||..|+.--.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 456789999887642 222 25777899999743211 35678888653
No 127
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=45.44 E-value=3 Score=26.45 Aligned_cols=46 Identities=20% Similarity=0.466 Sum_probs=29.0
Q ss_pred CccCcccccccccccccccCCCCcccHHHHHHHHh----cCCCCCCcccc
Q 028627 105 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDS 150 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~----~~~~CP~Cr~~ 150 (206)
..+..|.+|.+.-.-..--.|.-.||..|+.+-+. ..-.||.|...
T Consensus 6 ~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 45678999987522111135777899999875333 23458888653
No 128
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.88 E-value=9.4 Score=24.57 Aligned_cols=38 Identities=18% Similarity=0.368 Sum_probs=29.1
Q ss_pred CcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 108 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 108 ~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
..|+-|...+...++..-|..||..| +.|-.|+.++..
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSALGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTT--------SSCSSSCCCCCS
T ss_pred CcCccccCEeccceEEECCceeCccC--------CccccCCCCCCC
Confidence 47999998887555555677788877 789999988753
No 129
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=44.49 E-value=3.8 Score=22.76 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=9.8
Q ss_pred ccCcccccccccccc
Q 028627 106 REEECGICLEICCKI 120 (206)
Q Consensus 106 ~~~~C~IC~~~~~~~ 120 (206)
+...||+|+..+..+
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 346777777776644
No 130
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=43.52 E-value=25 Score=30.35 Aligned_cols=46 Identities=22% Similarity=0.530 Sum_probs=31.1
Q ss_pred CccCccccccccccccccc--CCCCcccHHHHHHHHh----------cCCCCCCcccc
Q 028627 105 EREEECGICLEICCKIVLP--DCNHSMCMRCYRNWRA----------RSQSCPFCRDS 150 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~--~CgH~Fc~~Ci~~w~~----------~~~~CP~Cr~~ 150 (206)
..+..|.+|-+.-.-...- .|...||..||...+. ..=.|=+|...
T Consensus 91 G~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 91 GYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 3456788887654322222 7889999999998874 23478888654
No 131
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.43 E-value=2.7 Score=28.72 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=30.6
Q ss_pred ccCccCcccccccccccccc---cCCCCcccHHHHHHHHhc----CCCCCCcccc
Q 028627 103 DIEREEECGICLEICCKIVL---PDCNHSMCMRCYRNWRAR----SQSCPFCRDS 150 (206)
Q Consensus 103 ~~~~~~~C~IC~~~~~~~~~---~~CgH~Fc~~Ci~~w~~~----~~~CP~Cr~~ 150 (206)
...++..|.||...-....+ -.|...||..|+.+-+.. .-.||.|+..
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 33556789999876542222 257778999998643332 3358988764
No 132
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=43.38 E-value=5 Score=28.01 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=24.8
Q ss_pred CccCccccccccccc---ccccCCCCcccHHHHHHHHh
Q 028627 105 EREEECGICLEICCK---IVLPDCNHSMCMRCYRNWRA 139 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~---~~~~~CgH~Fc~~Ci~~w~~ 139 (206)
..+..|.+|.+.-.. ..-..|+..||..|+.....
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 457789999876432 12257899999999976543
No 133
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=43.32 E-value=15 Score=25.83 Aligned_cols=48 Identities=13% Similarity=0.065 Sum_probs=36.1
Q ss_pred ccCccccccccccc---ccccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 106 REEECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 106 ~~~~C~IC~~~~~~---~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
+-+.|..|...+.+ .....=|..+|..|..+.+.....|..|..+|..
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 34788899888852 3344567789999988876555589999999874
No 134
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.61 E-value=8.6 Score=24.78 Aligned_cols=39 Identities=21% Similarity=0.468 Sum_probs=29.0
Q ss_pred cCcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 107 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
...|+-|...+.+.++..-|..||..| ..|..|+.+|..
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 2dlo_A 15 LEKCATCSQPILDRILRAMGKAYHPGC--------FTCVVCHRGLDG 53 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTT--------CBCSSSCCBCTT
T ss_pred CCccccCCCeecceeEEECCccccHHh--------cCcccCCCccCC
Confidence 457888888877655555677778777 789999888763
No 135
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.49 E-value=13 Score=23.90 Aligned_cols=39 Identities=13% Similarity=0.358 Sum_probs=29.7
Q ss_pred cCcccccccccc--cccccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 107 EEECGICLEICC--KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 107 ~~~C~IC~~~~~--~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
...|+.|...+. +.++..-|..||..| ..|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTT--------CCCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEECcccccccc--------CchhhCCCccCC
Confidence 357999999887 444555677888887 789999988864
No 136
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.23 E-value=10 Score=23.55 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=26.6
Q ss_pred cCcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 028627 107 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 152 (206)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~ 152 (206)
...|+-|.+.+....+..-|..||..| ..|..|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITSGGITYQDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCTTCEEETTEEECTTT--------TBCTTTCCBCT
T ss_pred cCCCcccCCEeCcceEEECccccccCc--------CEECCCCCCCC
Confidence 346888888776544444566777776 67888888875
No 137
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.81 E-value=9.8 Score=24.18 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=28.0
Q ss_pred Cccccccccccc----ccccCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 028627 108 EECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 152 (206)
Q Consensus 108 ~~C~IC~~~~~~----~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~ 152 (206)
..|+.|...+.. .++..-+..||.+| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCC
Confidence 468889888774 44445677788888 78999988875
No 138
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.31 E-value=11 Score=23.84 Aligned_cols=39 Identities=15% Similarity=0.359 Sum_probs=29.0
Q ss_pred cCcccccccccc-cccccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 107 EEECGICLEICC-KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 107 ~~~C~IC~~~~~-~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
...|+.|.+.+. ...+..-|..||..| ..|..|+.+|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCC--------CCCCCCCCccCC
Confidence 457999999887 334445677788877 789999998863
No 139
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.20 E-value=14 Score=23.55 Aligned_cols=37 Identities=16% Similarity=0.365 Sum_probs=28.5
Q ss_pred CcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 028627 108 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 152 (206)
Q Consensus 108 ~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~ 152 (206)
..|+-|.+.+....+..-|..||..| ..|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQGGVTYRDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSCCEESSSSEECTTT--------CBCSSSCCBCT
T ss_pred CcCCCCCCEecCcEEEECCchhhhhh--------CCcccCCCcCC
Confidence 57888888877655555677788877 78999998885
No 140
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=40.53 E-value=11 Score=24.17 Aligned_cols=33 Identities=27% Similarity=0.586 Sum_probs=24.3
Q ss_pred CccCcccccccccccccccCC-CCcccHHHHHHHH
Q 028627 105 EREEECGICLEICCKIVLPDC-NHSMCMRCYRNWR 138 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~C-gH~Fc~~Ci~~w~ 138 (206)
++..-|.||.+.- .-....| |-.||..|..+..
T Consensus 6 ee~pWC~ICneDA-tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNEDA-TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSCC-CEEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCCC-eEEecCCCCceehHHHHHHHc
Confidence 3456799999983 3445678 7789999987764
No 141
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=39.10 E-value=8.9 Score=25.98 Aligned_cols=46 Identities=15% Similarity=0.389 Sum_probs=30.3
Q ss_pred CccCcccccccccccccccCCCCcccHHHHHHHHhc----CCCCCCcccc
Q 028627 105 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR----SQSCPFCRDS 150 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~----~~~CP~Cr~~ 150 (206)
..+..|.+|.+.-.-..--.|.-.||..|+.+=+.. .-.||.|+..
T Consensus 23 ~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 456789999975321111356667999999765543 3469999754
No 142
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.31 E-value=22 Score=22.70 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=28.5
Q ss_pred Ccccccccccc--cccccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 108 EECGICLEICC--KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 108 ~~C~IC~~~~~--~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
..|+.|...+. ..++..-|..||..| ..|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFYEDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCCSSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEEEeCCccccccC--------CeecCCCCccCC
Confidence 47999999887 344444577888877 789999988763
No 143
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.06 E-value=14 Score=23.63 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=28.3
Q ss_pred CcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 108 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 108 ~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
..|+-|...+....+..-|..||..| ..|-.|+.++..
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLENYLSAMDTVWHPEC--------FVCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCSSCEEETTEEECTTT--------CBCSSSCCBSCS
T ss_pred CccccCCCeecceeEEECCCeEecCc--------CChhhCCCCCCC
Confidence 47888888877655555666777776 789999988864
No 144
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=37.18 E-value=2 Score=28.79 Aligned_cols=15 Identities=47% Similarity=1.604 Sum_probs=13.1
Q ss_pred cCCCCcccHHHHHHH
Q 028627 123 PDCNHSMCMRCYRNW 137 (206)
Q Consensus 123 ~~CgH~Fc~~Ci~~w 137 (206)
..|||.||..|-.+|
T Consensus 47 ~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 47 PQCHQTFCVRCKRQW 61 (86)
T ss_dssp TTTCCEECSSSCSBC
T ss_pred CCCCCccccccCCch
Confidence 459999999998888
No 145
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=36.16 E-value=22 Score=26.78 Aligned_cols=45 Identities=18% Similarity=0.460 Sum_probs=30.4
Q ss_pred CccCcccccccccccccc--cCCCCcccHHHHHHHHhc----------CCCCCCccc
Q 028627 105 EREEECGICLEICCKIVL--PDCNHSMCMRCYRNWRAR----------SQSCPFCRD 149 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~--~~CgH~Fc~~Ci~~w~~~----------~~~CP~Cr~ 149 (206)
..+..|.+|-+.-.-..- .+|...||..||..++.. .=.|=+|..
T Consensus 77 G~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 77 GYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 346778888875432222 268889999999888763 236888864
No 146
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.14 E-value=12 Score=23.25 Aligned_cols=38 Identities=16% Similarity=0.311 Sum_probs=27.7
Q ss_pred Cccccccccccc--ccccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 108 EECGICLEICCK--IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 108 ~~C~IC~~~~~~--~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
..|+.|...+.. .++..-|..||..| ..|-.|+.++..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEECcCeecccC--------CcccccCCccCC
Confidence 478899888874 34444677788777 688899888764
No 147
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=36.12 E-value=1.9 Score=28.89 Aligned_cols=11 Identities=18% Similarity=0.452 Sum_probs=5.8
Q ss_pred Ccccccccccc
Q 028627 108 EECGICLEICC 118 (206)
Q Consensus 108 ~~C~IC~~~~~ 118 (206)
..||.|...+.
T Consensus 3 ~~CP~C~~~l~ 13 (81)
T 2jrp_A 3 ITCPVCHHALE 13 (81)
T ss_dssp CCCSSSCSCCE
T ss_pred CCCCCCCCccc
Confidence 34666655544
No 148
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=36.06 E-value=8.2 Score=26.46 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=27.6
Q ss_pred ccCccccccccccccccc---CCCCcccHHHHHHHHh---cCCCCCCccc
Q 028627 106 REEECGICLEICCKIVLP---DCNHSMCMRCYRNWRA---RSQSCPFCRD 149 (206)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~---~CgH~Fc~~Ci~~w~~---~~~~CP~Cr~ 149 (206)
+...| ||........++ .|.-.||..|+..-.. ....||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34567 787765544333 5777899999854222 2468999964
No 149
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=35.31 E-value=32 Score=22.92 Aligned_cols=48 Identities=23% Similarity=0.514 Sum_probs=30.9
Q ss_pred CccCcccccccccc---cccc--cCCCCcccHHHHHHHHh--cCCCCCCcccccc
Q 028627 105 EREEECGICLEICC---KIVL--PDCNHSMCMRCYRNWRA--RSQSCPFCRDSLR 152 (206)
Q Consensus 105 ~~~~~C~IC~~~~~---~~~~--~~CgH~Fc~~Ci~~w~~--~~~~CP~Cr~~~~ 152 (206)
..+..|.||.+.-. +.++ -.|.-.||..|+..-.. ..-.||.|.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 46789999997641 1222 36777899999864321 3446888866544
No 150
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=34.22 E-value=21 Score=25.06 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=16.2
Q ss_pred cCccccccccccc--ccccCCCCcccHHHHHHHH
Q 028627 107 EEECGICLEICCK--IVLPDCNHSMCMRCYRNWR 138 (206)
Q Consensus 107 ~~~C~IC~~~~~~--~~~~~CgH~Fc~~Ci~~w~ 138 (206)
-+.|..|...+.. .....=|..+|..|..+.+
T Consensus 36 CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWT 69 (123)
T ss_dssp TCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHH
T ss_pred cCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHh
Confidence 3556666655521 1223345566666665543
No 151
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=33.61 E-value=13 Score=23.46 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=21.7
Q ss_pred ccCcccccccccccc-cccCCCCcccH-HHHHHHHhcCCCCCCccc
Q 028627 106 REEECGICLEICCKI-VLPDCNHSMCM-RCYRNWRARSQSCPFCRD 149 (206)
Q Consensus 106 ~~~~C~IC~~~~~~~-~~~~CgH~Fc~-~Ci~~w~~~~~~CP~Cr~ 149 (206)
+-..|..|...+... ....=|..+|. .|..+. ....|..|..
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~--f~~~C~~C~~ 69 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAM--FGPKGFGRGG 69 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHH--SSCCCSSCCC
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHH--hCccCCCcCC
Confidence 345666666665542 22334556666 465432 3455666643
No 152
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.37 E-value=19 Score=22.31 Aligned_cols=38 Identities=26% Similarity=0.511 Sum_probs=26.7
Q ss_pred cCccccccccccc--ccccCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 028627 107 EEECGICLEICCK--IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 152 (206)
Q Consensus 107 ~~~C~IC~~~~~~--~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~ 152 (206)
...|+.|.+.+.. .++..-+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECSSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEECCCeEcccC--------CcccccCCcCC
Confidence 3468888887663 34445677778777 67888888874
No 153
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.28 E-value=37 Score=21.80 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=30.5
Q ss_pred CccCcccccccccccc-cccCCCCcccHHHHHHHHhcCCCCCCcccccccc
Q 028627 105 EREEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 154 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~-~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~ 154 (206)
.....|+-|...+... .+..-|..||..| +.|-.|+.+|...
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCc--------CEEcCCCCCcCCC
Confidence 3457899999988532 3334577888888 7899999888644
No 154
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=32.87 E-value=24 Score=20.92 Aligned_cols=40 Identities=15% Similarity=0.301 Sum_probs=23.5
Q ss_pred cccccccccccc--cc--c-CCCCcccHHHHHH----HHhcCCCCCCcc
Q 028627 109 ECGICLEICCKI--VL--P-DCNHSMCMRCYRN----WRARSQSCPFCR 148 (206)
Q Consensus 109 ~C~IC~~~~~~~--~~--~-~CgH~Fc~~Ci~~----w~~~~~~CP~Cr 148 (206)
.|.+|.....+. .+ - .|.-.||..|+.- -......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 466787766432 11 1 4777889988731 112567788874
No 155
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.83 E-value=23 Score=22.20 Aligned_cols=41 Identities=12% Similarity=0.285 Sum_probs=30.3
Q ss_pred ccCcccccccccc--cccccCCCCcccHHHHHHHHhcCCCCCCcccccccc
Q 028627 106 REEECGICLEICC--KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 154 (206)
Q Consensus 106 ~~~~C~IC~~~~~--~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~ 154 (206)
....|+-|...+. +.++..-|..||..| ..|-.|+.++...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEeCccEecccc--------CeECCCCCCCCCC
Confidence 4568999999885 334445677788877 7899999888644
No 156
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=32.04 E-value=17 Score=22.87 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=28.3
Q ss_pred Cccccccccccc-----ccccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 108 EECGICLEICCK-----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 108 ~~C~IC~~~~~~-----~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
..|+-|...+.. .++..-|..||..| ..|-.|+.++..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTT--------CBCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCccc--------CEehhcCCCCCC
Confidence 578999888774 34444577788877 789999988863
No 157
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.77 E-value=26 Score=22.51 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=29.7
Q ss_pred CccCccccccccccc-ccccCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 028627 105 EREEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 152 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~-~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~ 152 (206)
.....|+-|-..+.. ..+..-+..||..| +.|-.|+.+|.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEEEECCccccccc--------CCcCcCCCCcC
Confidence 456789999998863 33344577788877 78999998886
No 158
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=31.51 E-value=15 Score=26.06 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=30.5
Q ss_pred cCccccccccccccc-ccCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 028627 107 EEECGICLEICCKIV-LPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 152 (206)
Q Consensus 107 ~~~C~IC~~~~~~~~-~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~ 152 (206)
...|+-|-..+.... +..-|..||..| +.|-.|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc--------cCcCcCCCccc
Confidence 468999999888663 555677888888 78999999886
No 159
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=31.41 E-value=12 Score=28.83 Aligned_cols=45 Identities=13% Similarity=0.309 Sum_probs=30.1
Q ss_pred cCccccccccccccc----c---cCCCCcccHHHHHH------HHh-----cCCCCCCccccc
Q 028627 107 EEECGICLEICCKIV----L---PDCNHSMCMRCYRN------WRA-----RSQSCPFCRDSL 151 (206)
Q Consensus 107 ~~~C~IC~~~~~~~~----~---~~CgH~Fc~~Ci~~------w~~-----~~~~CP~Cr~~~ 151 (206)
+..|+||...+.+.- . -.|...||..|..- -.. ..-.||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 346999998776431 2 25778899999822 111 267999998753
No 160
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=31.34 E-value=28 Score=22.27 Aligned_cols=44 Identities=16% Similarity=0.500 Sum_probs=27.5
Q ss_pred CccCccccccccccccccc--C--CC-CcccHHHHHHHHh----cCCCCCCccccc
Q 028627 105 EREEECGICLEICCKIVLP--D--CN-HSMCMRCYRNWRA----RSQSCPFCRDSL 151 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~--~--Cg-H~Fc~~Ci~~w~~----~~~~CP~Cr~~~ 151 (206)
.+...| +|.......++. . |. ..||..|+. +. ..-.||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 345667 898854322221 3 55 589999985 22 345799997654
No 161
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=31.26 E-value=27 Score=23.68 Aligned_cols=43 Identities=16% Similarity=0.498 Sum_probs=27.3
Q ss_pred CccCccccccccccccccc---C--CC-CcccHHHHHHHHh----cCCCCCCccccc
Q 028627 105 EREEECGICLEICCKIVLP---D--CN-HSMCMRCYRNWRA----RSQSCPFCRDSL 151 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~---~--Cg-H~Fc~~Ci~~w~~----~~~~CP~Cr~~~ 151 (206)
.+...| +|...... .++ . |. ..||..|+. +. ..-.||.|+...
T Consensus 34 ~e~~yC-iC~~~~~g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCCS-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCCC-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 344566 99886443 233 3 55 579999985 22 356799997654
No 162
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=31.19 E-value=17 Score=22.32 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=26.3
Q ss_pred cccccccccc--cccccCCCCccc--HHHHHHHHhcCCCCCCcccccc
Q 028627 109 ECGICLEICC--KIVLPDCNHSMC--MRCYRNWRARSQSCPFCRDSLR 152 (206)
Q Consensus 109 ~C~IC~~~~~--~~~~~~CgH~Fc--~~Ci~~w~~~~~~CP~Cr~~~~ 152 (206)
.|+-|...+. +..+..-|..|| ..| ..|-.|+.++.
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~C--------F~C~~C~~~L~ 43 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTEC--------FLCSCCSKCLI 43 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTT--------SBCTTTCCBCT
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCC--------EECCCCCCcCC
Confidence 5788888777 345555677788 777 78888888875
No 163
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=30.09 E-value=9.6 Score=28.60 Aligned_cols=45 Identities=20% Similarity=0.427 Sum_probs=28.9
Q ss_pred CccCccccccccccc-ccc---cCCCCcccHHHHHHHH-----hcCCCCCCcccc
Q 028627 105 EREEECGICLEICCK-IVL---PDCNHSMCMRCYRNWR-----ARSQSCPFCRDS 150 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~-~~~---~~CgH~Fc~~Ci~~w~-----~~~~~CP~Cr~~ 150 (206)
.....| +|.....+ ... -.|...||..|+.--. .....||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 345678 99876532 212 2577889999984211 246789999875
No 164
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=29.63 E-value=3.2 Score=28.80 Aligned_cols=43 Identities=23% Similarity=0.474 Sum_probs=28.7
Q ss_pred cCcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCcccccccc
Q 028627 107 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 154 (206)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~ 154 (206)
+..||.|...+... =++.+|..|-.. +.....||-|..+++..
T Consensus 32 ~~~CP~Cq~eL~~~----g~~~hC~~C~~~-f~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 32 ELHCPQCQHVLDQD----NGHARCRSCGEF-IEMKALCPDCHQPLQVL 74 (101)
T ss_dssp CCBCSSSCSBEEEE----TTEEEETTTCCE-EEEEEECTTTCSBCEEE
T ss_pred cccCccCCCcceec----CCEEECccccch-hhccccCcchhhHHHHH
Confidence 47899999876631 234457777432 23456799999998643
No 165
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=29.24 E-value=17 Score=27.52 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=26.3
Q ss_pred ccCccccccccccc---ccccCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 028627 106 REEECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 152 (206)
Q Consensus 106 ~~~~C~IC~~~~~~---~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~ 152 (206)
+-+.|..|...+.. .....=|..+|..|..+.......|+.|..+|.
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 34667777666553 222334566777776554432225777766664
No 166
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.53 E-value=49 Score=21.53 Aligned_cols=41 Identities=20% Similarity=0.446 Sum_probs=29.1
Q ss_pred ccCccccccccccc-ccccCCCCcccHHHHHHHHhcCCCCCCcccccccc
Q 028627 106 REEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 154 (206)
Q Consensus 106 ~~~~C~IC~~~~~~-~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~ 154 (206)
....|+-|-..+.. ..+..-|..||..| ..|-.|..+|...
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISC--------FRCSYCNNKLSLG 55 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTT--------CBCTTTCCBCCTT
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCC--------CeeCCCCCCCCCC
Confidence 45689999888764 23345677788877 6788888887643
No 167
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=27.89 E-value=26 Score=24.51 Aligned_cols=49 Identities=18% Similarity=0.347 Sum_probs=33.1
Q ss_pred CccCccccccccccc---ccccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 105 EREEECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~---~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
.+-+.|..|...+.. .....=|..+|..|..+.......|..|..+|..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 345788888877752 2334456778888877765444478888888753
No 168
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=27.54 E-value=80 Score=21.71 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=20.0
Q ss_pred ccCcccccccccc-----c--cc--ccCCCCcccHHHHH
Q 028627 106 REEECGICLEICC-----K--IV--LPDCNHSMCMRCYR 135 (206)
Q Consensus 106 ~~~~C~IC~~~~~-----~--~~--~~~CgH~Fc~~Ci~ 135 (206)
....|.+|...-. . .. -..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 3457889987531 1 11 14699999999994
No 169
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=26.32 E-value=35 Score=21.40 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=19.8
Q ss_pred CccCcccccccccccccc----c-CCCCcccHHHH
Q 028627 105 EREEECGICLEICCKIVL----P-DCNHSMCMRCY 134 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~----~-~CgH~Fc~~Ci 134 (206)
+....|++|...+.+... - .|.-.||..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 456689999998653211 2 57778999997
No 170
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=26.20 E-value=21 Score=22.17 Aligned_cols=46 Identities=17% Similarity=0.318 Sum_probs=29.5
Q ss_pred CccCccccccccccc--ccc---cCCCCcccHHHHHHHH-------hcCCCCCCcccc
Q 028627 105 EREEECGICLEICCK--IVL---PDCNHSMCMRCYRNWR-------ARSQSCPFCRDS 150 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~--~~~---~~CgH~Fc~~Ci~~w~-------~~~~~CP~Cr~~ 150 (206)
..+..|.+|...... ..+ -.|.-.||..|+.+-+ ...-.||.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 456789999986431 222 3678889999986522 134467777553
No 171
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.05 E-value=31 Score=23.70 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=21.9
Q ss_pred ccCccccccccccc---ccccCCCCcccHHHHHHHHh
Q 028627 106 REEECGICLEICCK---IVLPDCNHSMCMRCYRNWRA 139 (206)
Q Consensus 106 ~~~~C~IC~~~~~~---~~~~~CgH~Fc~~Ci~~w~~ 139 (206)
.-+.|..|...+.+ .....=|..+|..|..+.+.
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG 65 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT
T ss_pred hcCcccccCCchhcCCCeeEEECCeeechHHHHHHhC
Confidence 45778888777763 23344566788888766543
No 172
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=25.71 E-value=35 Score=18.19 Aligned_cols=15 Identities=33% Similarity=0.647 Sum_probs=11.9
Q ss_pred HHHHHHHHhhhcccc
Q 028627 10 HTFLFLVQWIDCRLA 24 (206)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (206)
-++||+..|+|.++.
T Consensus 10 ilvLfva~wsdvglc 24 (30)
T 1skh_A 10 ILVLFVAMWSDVGLC 24 (30)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhHHHHh
Confidence 378899999997753
No 173
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=25.38 E-value=37 Score=23.28 Aligned_cols=11 Identities=36% Similarity=0.984 Sum_probs=7.2
Q ss_pred CCCCCcccccc
Q 028627 142 QSCPFCRDSLR 152 (206)
Q Consensus 142 ~~CP~Cr~~~~ 152 (206)
..||+|..++.
T Consensus 48 ~~CPvCgs~l~ 58 (112)
T 1l8d_A 48 GKCPVCGRELT 58 (112)
T ss_dssp EECTTTCCEEC
T ss_pred CCCCCCCCcCC
Confidence 34777777665
No 174
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=23.24 E-value=98 Score=21.23 Aligned_cols=28 Identities=14% Similarity=0.469 Sum_probs=18.5
Q ss_pred CCCCcccHHHH---HH---HHhc-----CCCCCCccccc
Q 028627 124 DCNHSMCMRCY---RN---WRAR-----SQSCPFCRDSL 151 (206)
Q Consensus 124 ~CgH~Fc~~Ci---~~---w~~~-----~~~CP~Cr~~~ 151 (206)
.|+..||..|. .+ .+.. ...||.|...-
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 48888999996 21 1222 57899997643
No 175
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=23.18 E-value=28 Score=21.29 Aligned_cols=41 Identities=12% Similarity=0.280 Sum_probs=29.4
Q ss_pred ccCcccccccccccc--cccCCCCcccHHHHHHHHhcCCCCCCcccccccc
Q 028627 106 REEECGICLEICCKI--VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 154 (206)
Q Consensus 106 ~~~~C~IC~~~~~~~--~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~~ 154 (206)
....|+-|...+... ++..-|..||..| ..|-.|..++...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~C--------F~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQC--------FVCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTT--------SSCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCC--------CcccCCCCCCCCC
Confidence 345799999887733 4445677788877 6899999888643
No 176
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=22.57 E-value=43 Score=23.32 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=20.1
Q ss_pred cCcccccccccccccccCCCCcccH
Q 028627 107 EEECGICLEICCKIVLPDCNHSMCM 131 (206)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~CgH~Fc~ 131 (206)
...|..|...-..-+.+.|||.+|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 4579999877666678899999984
No 177
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.35 E-value=22 Score=26.39 Aligned_cols=25 Identities=16% Similarity=0.465 Sum_probs=15.9
Q ss_pred cCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 123 PDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 123 ~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
..|||.|=.. .....||.|..++..
T Consensus 136 ~~Cg~~~~~~------~~~~~Cp~CG~~~~~ 160 (165)
T 2lcq_A 136 IGCGRKFSTL------PPGGVCPDCGSKVKL 160 (165)
T ss_dssp SSSCCEESSC------CGGGBCTTTCCBEEE
T ss_pred CCCCCcccCC------CCCCcCCCCCCccee
Confidence 4678776432 223579999888643
No 178
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=21.30 E-value=86 Score=22.95 Aligned_cols=46 Identities=11% Similarity=0.253 Sum_probs=29.7
Q ss_pred CccCcccccccccccccccCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 028627 105 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 152 (206)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~ 152 (206)
.+-+.|..|...+.......=|..+|..|..+.. ...|..|..+|.
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~~C~~C~~~I~ 76 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIP 76 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH--SCBCTTTCCBCC
T ss_pred cccCccCCCCCcCCCCCcccCCeeeecccccccc--cccccccccccC
Confidence 3457888888777654334456778888875543 456777776664
No 179
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=20.53 E-value=24 Score=18.53 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=8.0
Q ss_pred CCCCCcccccc
Q 028627 142 QSCPFCRDSLR 152 (206)
Q Consensus 142 ~~CP~Cr~~~~ 152 (206)
..||+|+..+.
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 46999987654
No 180
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=20.08 E-value=21 Score=22.80 Aligned_cols=39 Identities=23% Similarity=0.445 Sum_probs=25.0
Q ss_pred cCcccccccccc-cccccCCCCcccHHHHHHHHhcCCCCCCccccccc
Q 028627 107 EEECGICLEICC-KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 153 (206)
Q Consensus 107 ~~~C~IC~~~~~-~~~~~~CgH~Fc~~Ci~~w~~~~~~CP~Cr~~~~~ 153 (206)
...|+.|.+.+. ...+..-|..||..| ..|-.|+.++..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCC--------FLCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSS--------EECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEEeCCccccccc--------CccCCCCCCCCC
Confidence 356888888774 223344566677766 578888877753
Done!