Query 028628
Match_columns 206
No_of_seqs 124 out of 832
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 00:21:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028628.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028628hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uuj_A Platelet-activating fac 95.3 0.018 6.1E-07 39.8 4.0 31 41-71 11-41 (88)
2 2xtc_A F-box-like/WD repeat-co 95.2 0.02 6.9E-07 39.7 3.9 34 37-70 2-35 (90)
3 2nxp_A Transcription initiatio 86.2 1.5 5.2E-05 33.1 5.9 68 97-168 35-103 (156)
4 2d68_A FOP, FGFR1OP; alpha hel 83.4 1.2 4.3E-05 30.1 3.7 30 41-70 19-48 (82)
5 1vyh_C Platelet-activating fac 82.8 0.24 8.3E-06 42.1 0.0 54 40-99 8-61 (410)
6 2j4b_A TAF5, transcription ini 76.1 5.6 0.00019 29.3 5.7 62 97-163 16-78 (138)
7 2j49_A Transcription initiatio 69.9 4.6 0.00016 30.2 3.9 61 97-162 18-79 (148)
8 2y4t_A DNAJ homolog subfamily 59.8 71 0.0024 26.1 11.8 76 27-103 198-283 (450)
9 2xz2_A CSTF-50, isoform B; RNA 58.7 12 0.0004 24.1 3.6 32 40-71 16-47 (66)
10 2p58_C Putative type III secre 45.9 74 0.0025 22.4 6.3 42 44-104 26-67 (116)
11 3q15_A PSP28, response regulat 42.7 81 0.0028 25.5 7.5 28 39-66 8-37 (378)
12 2pmy_A RAS and EF-hand domain- 38.2 28 0.00097 22.4 3.2 30 19-48 39-68 (91)
13 1oyi_A Double-stranded RNA-bin 37.5 25 0.00086 23.5 2.8 46 40-93 15-60 (82)
14 2dna_A Unnamed protein product 36.5 16 0.00055 23.5 1.6 25 81-105 34-60 (67)
15 2uwj_G Type III export protein 36.4 72 0.0025 22.4 5.1 42 44-104 25-66 (115)
16 1c07_A Protein (epidermal grow 35.9 38 0.0013 22.2 3.7 30 19-48 22-51 (95)
17 2lv7_A Calcium-binding protein 35.6 32 0.0011 23.2 3.2 31 19-49 48-80 (100)
18 3nso_A Protein S100-A3; EF-han 35.4 60 0.002 22.0 4.7 29 21-49 26-61 (101)
19 3mse_B Calcium-dependent prote 35.3 42 0.0014 24.4 4.1 32 19-50 120-151 (180)
20 2cp9_A EF-TS, EF-TSMT, elongat 35.0 20 0.00069 22.8 1.9 20 84-103 27-48 (64)
21 1q5z_A SIPA, SIPA; cell invasi 34.8 74 0.0025 23.1 5.1 65 7-71 71-141 (177)
22 3mkr_A Coatomer subunit epsilo 34.3 1.7E+02 0.0058 23.0 10.6 58 42-102 66-126 (291)
23 1whc_A RSGI RUH-027, UBA/UBX 3 33.5 47 0.0016 20.8 3.5 16 90-105 35-50 (64)
24 3sjr_A Uncharacterized protein 32.8 85 0.0029 23.7 5.3 66 97-163 98-163 (175)
25 1qjt_A EH1, epidermal growth f 32.1 52 0.0018 21.9 3.9 29 19-47 23-51 (99)
26 1xmk_A Double-stranded RNA-spe 31.9 30 0.001 22.8 2.5 47 41-94 10-57 (79)
27 3ieg_A DNAJ homolog subfamily 31.5 1.8E+02 0.006 22.4 13.5 57 87-144 244-300 (359)
28 2kgr_A Intersectin-1; structur 30.8 40 0.0014 23.0 3.1 28 20-47 27-54 (111)
29 2v5f_A Prolyl 4-hydroxylase su 29.9 1.2E+02 0.004 19.8 6.7 59 85-143 13-73 (104)
30 1c7v_A CAVP, calcium vector pr 29.9 48 0.0017 20.3 3.2 31 19-49 20-53 (81)
31 2xpi_A Anaphase-promoting comp 29.8 2.6E+02 0.0087 23.7 12.9 72 28-102 395-466 (597)
32 1tiz_A Calmodulin-related prot 29.5 57 0.0019 18.9 3.4 30 19-48 13-44 (67)
33 2xpi_A Anaphase-promoting comp 29.5 2.6E+02 0.0089 23.7 11.2 62 82-143 155-227 (597)
34 3t5x_A PCI domain-containing p 29.4 75 0.0026 24.5 4.8 92 27-128 35-131 (203)
35 2jpq_A UPF0352 protein VP2129; 28.8 73 0.0025 21.2 3.9 25 179-203 50-74 (83)
36 1y0n_A Hypothetical UPF0270 pr 28.6 33 0.0011 22.7 2.2 44 37-93 9-52 (78)
37 1a4p_A S100A10; S100 family, E 28.5 95 0.0033 20.3 4.7 15 20-34 21-35 (96)
38 3ej9_B Beta-subunit of trans-3 28.3 36 0.0012 22.0 2.2 26 179-204 12-37 (70)
39 3u3w_A Transcriptional activat 28.2 2.1E+02 0.007 22.1 9.3 87 57-144 46-143 (293)
40 3ulq_A Response regulator aspa 27.7 2.1E+02 0.0072 22.9 7.7 60 88-147 114-174 (383)
41 1fi6_A EH domain protein REPS1 27.5 38 0.0013 22.1 2.4 29 20-48 22-50 (92)
42 3ph0_C ASCG; type III secretio 27.4 1.2E+02 0.0039 18.9 4.5 20 44-63 25-44 (61)
43 1k2h_A S100A1, S-100 protein, 27.3 82 0.0028 19.8 4.1 30 19-48 22-59 (93)
44 3sxm_A Transcriptional regulat 27.3 78 0.0027 21.8 4.3 31 75-105 97-127 (140)
45 2vxg_A LD41624, GE-1, CG6181-P 27.0 1.8E+02 0.0062 21.1 7.5 26 80-105 3-29 (139)
46 1eh2_A EPS15; calcium binding, 26.4 80 0.0028 21.4 4.1 29 20-48 27-55 (106)
47 2pvb_A Protein (parvalbumin); 26.2 61 0.0021 21.1 3.4 29 20-48 54-87 (108)
48 3khe_A Calmodulin-like domain 25.2 62 0.0021 23.3 3.5 32 19-50 135-166 (191)
49 3iko_C Nucleoporin NUP84; NPC, 24.7 71 0.0024 28.1 4.3 29 76-104 176-204 (460)
50 4eto_A Protein S100-A4; calciu 23.8 1.5E+02 0.005 19.4 4.9 28 21-48 26-60 (93)
51 1wr1_B Ubiquitin-like protein 23.5 28 0.00097 21.5 1.1 15 89-103 42-56 (58)
52 1pva_A Parvalbumin; calcium bi 23.4 75 0.0026 20.7 3.4 29 20-48 55-88 (110)
53 2ekk_A UBA domain from E3 ubiq 23.3 57 0.0019 18.8 2.4 16 88-103 31-46 (47)
54 2voi_B BH3-interacting domain 23.1 47 0.0016 18.4 1.8 13 7-19 11-23 (34)
55 2bwb_A Ubiquitin-like protein 22.9 76 0.0026 18.4 2.9 13 89-101 32-44 (46)
56 2ccm_A Calexcitin; EF hand, ca 22.8 99 0.0034 22.2 4.3 30 19-48 121-150 (191)
57 2ho1_A Type 4 fimbrial biogene 22.7 2.3E+02 0.0077 20.7 13.8 112 26-143 57-168 (252)
58 2knz_A Ubiquilin-4; cytoplasm, 22.7 1E+02 0.0035 18.3 3.6 16 89-104 36-51 (53)
59 1k9u_A Polcalcin PHL P 7; poll 22.7 71 0.0024 19.3 3.0 29 19-47 15-44 (78)
60 1ify_A HHR23A, UV excision rep 22.5 80 0.0027 18.5 3.0 24 82-105 23-48 (49)
61 1q80_A SCP, sarcoplasmic calci 22.5 61 0.0021 22.8 3.0 30 19-48 106-135 (174)
62 3akb_A Putative calcium bindin 22.1 91 0.0031 21.5 3.8 30 19-48 110-139 (166)
63 3ct5_A Morphogenesis protein 1 22.1 1.1E+02 0.0037 22.7 4.3 42 20-72 5-51 (159)
64 1k8k_G P16, ARP2/3 complex 16 22.0 83 0.0028 23.4 3.6 25 81-105 39-63 (151)
65 3nau_A Zinc fingers and homeob 21.8 1.3E+02 0.0045 19.0 4.0 35 9-43 14-48 (66)
66 3dwl_G Actin-related protein 2 21.7 41 0.0014 25.2 1.8 24 82-105 41-64 (152)
67 2vq2_A PILW, putative fimbrial 21.5 2.2E+02 0.0074 20.0 12.9 16 128-143 159-174 (225)
68 3fs7_A Parvalbumin, thymic; ca 21.5 82 0.0028 20.5 3.3 16 20-35 55-70 (109)
69 2kbw_B BH3-interacting domain 21.5 52 0.0018 18.3 1.8 14 7-20 15-28 (35)
70 1bu3_A Calcium-binding protein 21.4 71 0.0024 20.8 3.0 14 20-33 21-34 (109)
71 3m20_A 4-oxalocrotonate tautom 21.4 86 0.003 18.8 3.1 27 178-204 10-36 (62)
72 2kn2_A Calmodulin; S MAPK phos 21.1 95 0.0032 19.4 3.5 30 19-48 21-52 (92)
73 2opo_A Polcalcin CHE A 3; calc 20.8 86 0.003 19.3 3.2 30 19-48 23-53 (86)
74 2bid_A Protein (BID); programm 20.6 70 0.0024 24.7 2.9 33 7-55 88-120 (197)
75 1avs_A Troponin C; muscle cont 20.4 1.1E+02 0.0038 19.1 3.7 30 19-48 32-63 (90)
76 3ox6_A Calcium-binding protein 20.4 1.3E+02 0.0044 20.3 4.3 32 19-50 100-134 (153)
77 1rwy_A Parvalbumin alpha; EF-h 20.3 85 0.0029 20.3 3.2 14 21-34 55-68 (109)
78 2jrx_A UPF0352 protein YEJL; h 20.2 94 0.0032 20.7 3.1 24 179-202 50-73 (83)
79 1vek_A UBP14, ubiquitin-specif 20.0 1.1E+02 0.0037 20.2 3.5 24 82-105 44-70 (84)
No 1
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.32 E-value=0.018 Score=39.77 Aligned_cols=31 Identities=23% Similarity=0.567 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHhCCCC
Q 028628 41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 71 (206)
Q Consensus 41 ~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~~ 71 (206)
++|++.|++||..+||.+++.+|.+|+++..
T Consensus 11 eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~ 41 (88)
T 1uuj_A 11 DELNRAIADYLRSNGYEEAYSVFKKEAELDM 41 (88)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhcCCC
Confidence 4689999999999999999999999998763
No 2
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=95.18 E-value=0.02 Score=39.71 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCC
Q 028628 37 KIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE 70 (206)
Q Consensus 37 ~~~~~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~ 70 (206)
.++.+++|.+|..||...||..||-+|.+|+++.
T Consensus 2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 5677888999999999999999999999998874
No 3
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=86.25 E-value=1.5 Score=33.06 Aligned_cols=68 Identities=19% Similarity=0.164 Sum_probs=48.6
Q ss_pred HHHHHhhCchhhh-cccchhhhhHHHHHHHHHHcCChHHHHHHHHHhcCccccCChhHHHHHHHHHhhhcccC
Q 028628 97 IEKVNDLNPEILD-TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFED 168 (206)
Q Consensus 97 i~~~~~~~p~l~~-~~s~L~F~L~~q~fieli~~~~~~~Al~y~r~~l~~~~~~~~~~~~~i~~l~~LLay~~ 168 (206)
..|++.. ++..+ .=..+.|=+-++-|++||.+|...+|-+|.+++-+-+... +.+.++.+.++..-..
T Consensus 35 ~~wv~~s-ld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~---~~~~i~~L~~i~~~~~ 103 (156)
T 2nxp_A 35 KHFIECS-LDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECY---YQDDLRVLSSLTKKEH 103 (156)
T ss_dssp HHHHHTS-CHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGG---GHHHHHHHHTCCSHHH
T ss_pred HHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHH---HHHHHHHHhcCCCHHH
Confidence 4666653 22222 2267899999999999999999999999999877666533 3677777766544333
No 4
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=83.38 E-value=1.2 Score=30.06 Aligned_cols=30 Identities=23% Similarity=0.122 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHhCCC
Q 028628 41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTE 70 (206)
Q Consensus 41 ~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~ 70 (206)
..++.+|.+||-..||.=|+..|..|+|.+
T Consensus 19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 19 RLVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 357899999999999999999999999986
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=82.84 E-value=0.24 Score=42.13 Aligned_cols=54 Identities=17% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHH
Q 028628 40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEK 99 (206)
Q Consensus 40 ~~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Ai~~ 99 (206)
+++++++|++||..+||.+++.+|.+|.+++..... ......+.++.|+..+..
T Consensus 8 ~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~~------~~~~~~~~~~~w~~~~~l 61 (410)
T 1vyh_C 8 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEEL------DKKYAGLLEKKWTSVIRL 61 (410)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcch------hhhhhchhhhhhhheeeH
Confidence 356799999999999999999999999987532111 122344566777666553
No 6
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=76.07 E-value=5.6 Score=29.27 Aligned_cols=62 Identities=19% Similarity=0.264 Sum_probs=43.3
Q ss_pred HHHHHhhCchhhh-cccchhhhhHHHHHHHHHHcCChHHHHHHHHHhcCccccCChhHHHHHHHHHhh
Q 028628 97 IEKVNDLNPEILD-TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVAL 163 (206)
Q Consensus 97 i~~~~~~~p~l~~-~~s~L~F~L~~q~fieli~~~~~~~Al~y~r~~l~~~~~~~~~~~~~i~~l~~L 163 (206)
..|++.. +++.+ .=+.+.|=+-++-|++||.+|...+|-+|..++-+.+... .++++.+.++
T Consensus 16 ~~wv~~s-ld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~----~~~i~~L~~i 78 (138)
T 2j4b_A 16 KTWIEDS-LDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK----SEEIKQFESI 78 (138)
T ss_dssp HHHHHHS-CHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C----HHHHHHHTTC
T ss_pred HHHHHhC-cHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH----HHHHHHHhcC
Confidence 4666653 23222 2267899999999999999999999999998766655422 4666666553
No 7
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=69.88 E-value=4.6 Score=30.20 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=41.2
Q ss_pred HHHHHhhCchhhh-cccchhhhhHHHHHHHHHHcCChHHHHHHHHHhcCccccCChhHHHHHHHHHh
Q 028628 97 IEKVNDLNPEILD-TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVA 162 (206)
Q Consensus 97 i~~~~~~~p~l~~-~~s~L~F~L~~q~fieli~~~~~~~Al~y~r~~l~~~~~~~~~~~~~i~~l~~ 162 (206)
..|++.. +++.+ .=+.+.|=+.++-|++||.+| ..+|-+|..++-+.+.. .+.++++.+.+
T Consensus 18 r~wv~~s-ld~yk~EL~~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~---~~~~~i~~L~~ 79 (148)
T 2j49_A 18 KNWVDSS-LEIYKPELSYIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKD---FHGSEINRLFS 79 (148)
T ss_dssp HHHHHTS-CTTTHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHH---HHHHHHHTTTT
T ss_pred HHHHHhC-cHhhHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHH---HHHHHHHHHhc
Confidence 4666553 22222 125689999999999999999 99999998876655542 23455555544
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=59.76 E-value=71 Score=26.11 Aligned_cols=76 Identities=11% Similarity=0.053 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHHHH----------HHHHHHHHHcCCHHHH
Q 028628 27 EEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITD----------RMAVKKAVQCGNVEDA 96 (206)
Q Consensus 27 ~~~~~~~~~~~~~~~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~~~~~~~~~~~----------r~~I~~~I~~g~i~~A 96 (206)
..+.+.+...+.+......+..-|....-+.++...|.+-..+.|... ..... ..........|++++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 276 (450)
T 2y4t_A 198 SDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK-RCFAHYKQVKKLNKLIESAEELIRDGRYTDA 276 (450)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 344444444444444444444444443334444444544444433221 11111 1123445567788888
Q ss_pred HHHHHhh
Q 028628 97 IEKVNDL 103 (206)
Q Consensus 97 i~~~~~~ 103 (206)
+.++++.
T Consensus 277 ~~~~~~~ 283 (450)
T 2y4t_A 277 TSKYESV 283 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776553
No 9
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=58.73 E-value=12 Score=24.11 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCC
Q 028628 40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 71 (206)
Q Consensus 40 ~~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~~ 71 (206)
++.|-++|..-|...||...|..+.+..+..+
T Consensus 16 Re~LYrLIISQL~YDG~~~iA~~L~~~v~~~~ 47 (66)
T 2xz2_A 16 REILYRLMISQLMYDGLEKFAMELSMLVKADQ 47 (66)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 46689999999999999999999999988654
No 10
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=45.91 E-value=74 Score=22.44 Aligned_cols=42 Identities=17% Similarity=0.339 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Q 028628 44 NKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLN 104 (206)
Q Consensus 44 ~~lI~~YL~~~Gy~~ta~~f~~e~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Ai~~~~~~~ 104 (206)
..-|+++|-.+|- +-+.++ .++..+.-.|+.++|+...+.+.
T Consensus 26 A~tIAdwL~~~~~-~E~v~l------------------IR~sSLmNrG~Yq~Al~l~~~~c 67 (116)
T 2p58_C 26 ANCIAEWLHLKGE-EEAVQL------------------IRLSSLMNRGDYASALQQGNKLA 67 (116)
T ss_dssp HHHHHHHHHHTTC-HHHHHH------------------HHHHHHHHTTCHHHHHHHHTTSC
T ss_pred HHHHHHHHHhCCc-HHHHHH------------------HHHHHHHcchhHHHHHHhcCCCC
Confidence 5678888888776 333333 34666778899999999987765
No 11
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=42.66 E-value=81 Score=25.53 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHH--HhhCHHHHHHHHHHH
Q 028628 39 RKEDMNKLVMNFL--VTEGYVDAAEKFRME 66 (206)
Q Consensus 39 ~~~~l~~lI~~YL--~~~Gy~~ta~~f~~e 66 (206)
+...+..+|-++. +..+..+.|..+.++
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~ 37 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAE 37 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3344455555554 555555555555554
No 12
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=38.20 E-value=28 Score=22.44 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=22.3
Q ss_pred hcccCCCHHHHHHHHhcCCCCHHHHHHHHH
Q 028628 19 MSKKVITREEWEKKLNDVKIRKEDMNKLVM 48 (206)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lI~ 48 (206)
.++|.|+.+|+...+..+..+...+..++.
T Consensus 39 d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 39 NRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp TCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 457899999999888877766666555543
No 13
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=37.46 E-value=25 Score=23.48 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHcCCH
Q 028628 40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNV 93 (206)
Q Consensus 40 ~~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~~~~~~~~~~~r~~I~~~I~~g~i 93 (206)
...+.+-|+++|.++| -++..++++.|+.. -..|+++..+-.+|-+
T Consensus 15 ~~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk------~aVr~~L~~Le~eG~I 60 (82)
T 1oyi_A 15 NAEIVCEAIKTIGIEG--ATAAQLTRQLNMEK------REVNKALYDLQRSAMV 60 (82)
T ss_dssp SHHHHHHHHHHHSSST--EEHHHHHHHSSSCH------HHHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHHcC--CCHHHHHHHHCcCH------HHHHHHHHHHHHCCCE
Confidence 3455677889999999 88999999999852 3345666666666644
No 14
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=36.54 E-value=16 Score=23.51 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=17.5
Q ss_pred HHHHHHHH--HcCCHHHHHHHHHhhCc
Q 028628 81 RMAVKKAV--QCGNVEDAIEKVNDLNP 105 (206)
Q Consensus 81 r~~I~~~I--~~g~i~~Ai~~~~~~~p 105 (206)
++...+++ ..||++.|++|+-.+-+
T Consensus 34 ~~an~~AL~at~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 34 YNANLQALIATDGDTNAAIYKLKSSQG 60 (67)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 34434443 36899999999987755
No 15
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=36.39 E-value=72 Score=22.45 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Q 028628 44 NKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLN 104 (206)
Q Consensus 44 ~~lI~~YL~~~Gy~~ta~~f~~e~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Ai~~~~~~~ 104 (206)
..-|+++|-.+|- +-+.++ .++..+.-.|+.++|+...+.+.
T Consensus 25 A~tIAdwL~~~~~-~E~v~l------------------IR~sSLmNrG~Yq~Al~l~~~~c 66 (115)
T 2uwj_G 25 ALCIAEWLERLGQ-DEAARL------------------IRISSLANQGRYQEALAFAHGNP 66 (115)
T ss_dssp HHHHHHHHHHTTC-HHHHHH------------------HHHHHHHHTTCHHHHHGGGTTCC
T ss_pred HHHHHHHHHhCCc-HHHHHH------------------HHHHHHHcchhHHHHHHhcCCCC
Confidence 5678888888776 333333 34566778899999998877664
No 16
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=35.93 E-value=38 Score=22.22 Aligned_cols=30 Identities=3% Similarity=-0.057 Sum_probs=23.9
Q ss_pred hcccCCCHHHHHHHHhcCCCCHHHHHHHHH
Q 028628 19 MSKKVITREEWEKKLNDVKIRKEDMNKLVM 48 (206)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lI~ 48 (206)
.++|.|+.+|+...+.....+...+..++.
T Consensus 22 d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 22 DMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp TCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 467999999999999888777776666654
No 17
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=35.58 E-value=32 Score=23.15 Aligned_cols=31 Identities=6% Similarity=0.184 Sum_probs=23.1
Q ss_pred hcccCCCHHHHHHHHhc--CCCCHHHHHHHHHH
Q 028628 19 MSKKVITREEWEKKLND--VKIRKEDMNKLVMN 49 (206)
Q Consensus 19 ~~~~~~~~~~~~~~~~~--~~~~~~~l~~lI~~ 49 (206)
.++|+|+.+|+...+.. .+++...+..++..
T Consensus 48 d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~ 80 (100)
T 2lv7_A 48 DGNGFISKQELGTAMRSLGYMPNEVELEVIIQR 80 (100)
T ss_dssp SCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 46799999999888874 45677777776644
No 18
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=35.38 E-value=60 Score=22.01 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=22.2
Q ss_pred ccCCCHHHHHHHHhc-------CCCCHHHHHHHHHH
Q 028628 21 KKVITREEWEKKLND-------VKIRKEDMNKLVMN 49 (206)
Q Consensus 21 ~~~~~~~~~~~~~~~-------~~~~~~~l~~lI~~ 49 (206)
+|+||++|+...+.. .+.+...++.+|.+
T Consensus 26 ~G~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~ 61 (101)
T 3nso_A 26 KYKLCQAELKELLQKELATWTPTEFRECDYNKFMSV 61 (101)
T ss_dssp TTEECHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHH
T ss_pred CCEECHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Confidence 489999999888864 45667777777755
No 19
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=35.34 E-value=42 Score=24.41 Aligned_cols=32 Identities=9% Similarity=0.267 Sum_probs=25.1
Q ss_pred hcccCCCHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028628 19 MSKKVITREEWEKKLNDVKIRKEDMNKLVMNF 50 (206)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lI~~Y 50 (206)
.++|.|+++|+...+.+.+++...+..++..+
T Consensus 120 d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~ 151 (180)
T 3mse_B 120 DEDGYISKSDIVSLVHDKVLDNNDIDNFFLSV 151 (180)
T ss_dssp TCSSCBCHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 35688999999888888888888887776554
No 20
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=35.00 E-value=20 Score=22.82 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=15.0
Q ss_pred HHHHH--HcCCHHHHHHHHHhh
Q 028628 84 VKKAV--QCGNVEDAIEKVNDL 103 (206)
Q Consensus 84 I~~~I--~~g~i~~Ai~~~~~~ 103 (206)
-+.++ .+||++.|+.|+++.
T Consensus 27 cKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 27 CKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHH
Confidence 34444 469999999999864
No 21
>1q5z_A SIPA, SIPA; cell invasion; 1.80A {Salmonella typhimurium} SCOP: a.196.1.1
Probab=34.84 E-value=74 Score=23.14 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhhcccCCCHHHHHHHHhcCCCCH------HHHHHHHHHHHHhhCHHHHHHHHHHHhCCCC
Q 028628 7 VIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRK------EDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 71 (206)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~~ 71 (206)
|-|....+.+-+-++..|.-......-..|+-++ +.+...|.-|=.++.+.++|-.|.+|+|+..
T Consensus 71 vrrafd~lraeil~nd~iks~alkaqcsdi~~~~elk~kidtlke~it~hpqkeklaevalqf~reagltk 141 (177)
T 1q5z_A 71 VRRAFDGLRAEILPNDTIKSAALKAQCSDIDKHPELKAKMETLKEVITHHPQKEKLAEIALQFAREAGLTR 141 (177)
T ss_dssp HHHHHHHHHHHHSCSSHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHCTTT
T ss_pred HHHhhhhhhhhhcCCchHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhchhh
Confidence 4444555555566666666555555555555444 4566777777778889999999999999864
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=34.30 E-value=1.7e+02 Score=22.99 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhCHHHH-HHHHHHHh--CCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 028628 42 DMNKLVMNFLVTEGYVDA-AEKFRMES--GTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVND 102 (206)
Q Consensus 42 ~l~~lI~~YL~~~Gy~~t-a~~f~~e~--~~~~~~~~~~~~~r~~I~~~I~~g~i~~Ai~~~~~ 102 (206)
..-..+++|+...|-.+. .+.|.+-. +..|.. .+.. ...=.-....|++++|++++++
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~-~~~~--~~la~~~~~~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN-TTFL--LMAASIYFYDQNPDAALRTLHQ 126 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC-HHHH--HHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCC-HHHH--HHHHHHHHHCCCHHHHHHHHhC
Confidence 345667778888774444 44444422 222221 1111 1111233466777777777766
No 23
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.45 E-value=47 Score=20.77 Aligned_cols=16 Identities=13% Similarity=0.183 Sum_probs=13.6
Q ss_pred cCCHHHHHHHHHhhCc
Q 028628 90 CGNVEDAIEKVNDLNP 105 (206)
Q Consensus 90 ~g~i~~Ai~~~~~~~p 105 (206)
+++++.|++|+-.|.+
T Consensus 35 ~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 35 NQGIEAAMDWLMEHED 50 (64)
T ss_dssp SCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhCCC
Confidence 5799999999988764
No 24
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=32.84 E-value=85 Score=23.69 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=43.9
Q ss_pred HHHHHhhCchhhhcccchhhhhHHHHHHHHHHcCChHHHHHHHHHhcCccccCChhHHHHHHHHHhh
Q 028628 97 IEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVAL 163 (206)
Q Consensus 97 i~~~~~~~p~l~~~~s~L~F~L~~q~fieli~~~~~~~Al~y~r~~l~~~~~~~~~~~~~i~~l~~L 163 (206)
+......+..-...|+++.+.=....|+++|+.| +++-..=||..|..+..-..+....|+++-.|
T Consensus 98 VsfaT~FF~~yq~qhPd~~~ee~L~~Fm~lIgGG-iEqGF~EArdIL~GL~VleG~IA~~IdkTY~L 163 (175)
T 3sjr_A 98 LLGMEILMELYRQQHPDWTAPAIRQAFAPLARAG-LERGYQEACQVLRQLNVYTPAVAGQLQGLLLL 163 (175)
T ss_dssp HHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH-HHHhHHHHHHHHhhccccCcHHHHhHHHHHHH
Confidence 3445555555666789999999999999999876 55556666666655543334445555555443
No 25
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=32.13 E-value=52 Score=21.93 Aligned_cols=29 Identities=7% Similarity=-0.068 Sum_probs=22.8
Q ss_pred hcccCCCHHHHHHHHhcCCCCHHHHHHHH
Q 028628 19 MSKKVITREEWEKKLNDVKIRKEDMNKLV 47 (206)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lI 47 (206)
.++|.|+.+|+...+....++...+..++
T Consensus 23 d~dG~Is~~el~~~l~~~~l~~~~l~~i~ 51 (99)
T 1qjt_A 23 GNTGRVLALDAAAFLKKSGLPDLILGKIW 51 (99)
T ss_dssp TTSSCCCSHHHHHHHHTSSSCHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 35789999999998888877776666655
No 26
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=31.95 E-value=30 Score=22.79 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHH-HHHHHHHHHHHcCCHH
Q 028628 41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATI-TDRMAVKKAVQCGNVE 94 (206)
Q Consensus 41 ~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~~~~~~~~~-~~r~~I~~~I~~g~i~ 94 (206)
..+..-|++||..+|= -||..++++.|+. .. ..|+.+..+-.+|-+.
T Consensus 10 ~~~~~~IL~~Lk~~g~-~ta~eiA~~Lgit------~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 10 AEIKEKICDYLFNVSD-SSALNLAKNIGLT------KARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHHHHHHHHTCC-EEHHHHHHHHCGG------GHHHHHHHHHHHHHTTSEE
T ss_pred hhHHHHHHHHHHHcCC-cCHHHHHHHcCCC------cHHHHHHHHHHHHHCCCEE
Confidence 4567889999999994 5799999999985 23 4567777777777665
No 27
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=31.49 E-value=1.8e+02 Score=22.35 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=27.3
Q ss_pred HHHcCCHHHHHHHHHhhCchhhhcccchhhhhHHHHHHHHHHcCChHHHHHHHHHhcC
Q 028628 87 AVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELA 144 (206)
Q Consensus 87 ~I~~g~i~~Ai~~~~~~~p~l~~~~s~L~F~L~~q~fieli~~~~~~~Al~y~r~~l~ 144 (206)
.+..|++++|+..+++... ....++.....++...-.-+...|+..+|+++.++-+.
T Consensus 244 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 300 (359)
T 3ieg_A 244 LIRDGRYTDATSKYESVMK-TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ 300 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHH-HCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4566777777766654321 11111222222222222223456777777777776543
No 28
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=30.75 E-value=40 Score=23.01 Aligned_cols=28 Identities=7% Similarity=0.060 Sum_probs=22.7
Q ss_pred cccCCCHHHHHHHHhcCCCCHHHHHHHH
Q 028628 20 SKKVITREEWEKKLNDVKIRKEDMNKLV 47 (206)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~l~~lI 47 (206)
++|.|+.+|+...+.+..++...+..++
T Consensus 27 ~dG~I~~~El~~~l~~~~~~~~~~~~i~ 54 (111)
T 2kgr_A 27 MSGHLTGPQARTILMQSSLPQAQLASIW 54 (111)
T ss_dssp SCCEEEHHHHHHHHHTTCCCHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHhCCCCHHHHHHHH
Confidence 5789999999999988777777766654
No 29
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=29.90 E-value=1.2e+02 Score=19.82 Aligned_cols=59 Identities=10% Similarity=0.022 Sum_probs=34.0
Q ss_pred HHHHHcCCHHHHHHHHHhhCchhhhcc--cchhhhhHHHHHHHHHHcCChHHHHHHHHHhc
Q 028628 85 KKAVQCGNVEDAIEKVNDLNPEILDTN--PQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143 (206)
Q Consensus 85 ~~~I~~g~i~~Ai~~~~~~~p~l~~~~--s~L~F~L~~q~fieli~~~~~~~Al~y~r~~l 143 (206)
..+...|++..|+.|.++-........ ..-.-.++.+--.-+.+.|+..+|+.+.++-+
T Consensus 13 ~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 13 KVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 345678999999999987532221111 01111222111222457789999999888754
No 30
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=29.90 E-value=48 Score=20.35 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=22.4
Q ss_pred hcccCCCHHHHHHHHhcCC---CCHHHHHHHHHH
Q 028628 19 MSKKVITREEWEKKLNDVK---IRKEDMNKLVMN 49 (206)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~---~~~~~l~~lI~~ 49 (206)
.++|.|+.+|+...+..+. ++...+..++..
T Consensus 20 d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 53 (81)
T 1c7v_A 20 NGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKE 53 (81)
T ss_dssp SGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 4578999999999887765 566666665543
No 31
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=29.84 E-value=2.6e+02 Score=23.71 Aligned_cols=72 Identities=11% Similarity=-0.028 Sum_probs=32.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 028628 28 EWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVND 102 (206)
Q Consensus 28 ~~~~~~~~~~~~~~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Ai~~~~~ 102 (206)
.+.+.+...+.+....+.++.-|....-+.++...|.+-....|... .. ....+.-....|++++|++..++
T Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~--~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 395 YFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH-LP--YLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS-HH--HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch-HH--HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444443444455555555555554445555555555444433211 11 11223333445666666555544
No 32
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=29.50 E-value=57 Score=18.90 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=20.6
Q ss_pred hcccCCCHHHHHHHHhcC--CCCHHHHHHHHH
Q 028628 19 MSKKVITREEWEKKLNDV--KIRKEDMNKLVM 48 (206)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~--~~~~~~l~~lI~ 48 (206)
.++|.|+.+|+...+..+ +++...+..++.
T Consensus 13 d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~ 44 (67)
T 1tiz_A 13 NKDGKLSLDEFREVALAFSPYFTQEDIVKFFE 44 (67)
T ss_dssp TSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 467899999998888754 355555555443
No 33
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=29.47 E-value=2.6e+02 Score=23.67 Aligned_cols=62 Identities=19% Similarity=0.081 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCchhh-----------hcccchhhhhHHHHHHHHHHcCChHHHHHHHHHhc
Q 028628 82 MAVKKAVQCGNVEDAIEKVNDLNPEIL-----------DTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143 (206)
Q Consensus 82 ~~I~~~I~~g~i~~Ai~~~~~~~p~l~-----------~~~s~L~F~L~~q~fieli~~~~~~~Al~y~r~~l 143 (206)
..+.-....|++++|++.+++..|.-. ..+.......+...-.-+.+.|+..+|+++.++-+
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 227 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEAL 227 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445556778888888888876544320 00001111122222222456788999998888754
No 34
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=29.35 E-value=75 Score=24.47 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHH----HhhCHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 028628 27 EEWEKKLNDVKIRKEDMNKLVMNFL----VTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVND 102 (206)
Q Consensus 27 ~~~~~~~~~~~~~~~~l~~lI~~YL----~~~Gy~~ta~~f~~e~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Ai~~~~~ 102 (206)
+.+..++.+.+.+...-.+.|+-|| +-.|...+...|.+ .+.. ....+.++++.||+..--+++++
T Consensus 35 ~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll~~-~~~~---------~y~~L~~Avr~Gdl~~f~~~l~~ 104 (203)
T 3t5x_A 35 EYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKK-YHLM---------QFAEVTRAVSEGNLLLLHEALAK 104 (203)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHHHHHH-TTCG---------GGHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCHHHhhh-Cchh---------HHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455666666655555567888888 44565555555532 2221 23468999999999999999999
Q ss_pred hCchhhhcccc-hhhhhHHHHHHHHHH
Q 028628 103 LNPEILDTNPQ-LFFHLQQQRLIELIR 128 (206)
Q Consensus 103 ~~p~l~~~~s~-L~F~L~~q~fieli~ 128 (206)
+...+.+.+-. +.-.++..-+..+++
T Consensus 105 ~~~~f~~~~~~lll~rlr~~v~r~l~r 131 (203)
T 3t5x_A 105 HEAFFIRCGIFLILEKLKIITYRNLFK 131 (203)
T ss_dssp THHHHHHHTCHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHCChHHHHHHHHHHHHHHHHH
Confidence 87766665432 222333334445555
No 35
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=28.81 E-value=73 Score=21.19 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=21.7
Q ss_pred ChhhHHHHHHHHHHHHHhhCCCCCC
Q 028628 179 DISQRLKTASEVNAAILTSQSHEKG 203 (206)
Q Consensus 179 ~~~~r~~la~~vN~aiL~~~~~~~~ 203 (206)
.+..|..+|+.|-.|+..+...++.
T Consensus 50 ~~~qR~~iAe~Fa~AL~~Svk~~~~ 74 (83)
T 2jpq_A 50 AASQRKLIAEKFAQALMSSLETPKT 74 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 4899999999999999999877553
No 36
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=28.57 E-value=33 Score=22.75 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHcCCH
Q 028628 37 KIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNV 93 (206)
Q Consensus 37 ~~~~~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~~~~~~~~~~~r~~I~~~I~~g~i 93 (206)
.++++.|+.+|-+|..|+|-- .|- ....-....++++++.+|+.
T Consensus 9 ~L~~eTL~nLIeefv~RegtD---------yg~----E~sL~~kv~qv~~qL~~Gea 52 (78)
T 1y0n_A 9 LLEADTLNNLLEDFVTREGTD---------NGD----ETPLDVRVERARHALRRGEA 52 (78)
T ss_dssp GSCHHHHHHHHHHHHHCC--------------------CCHHHHHHHHHHHHHTTSE
T ss_pred hCCHHHHHHHHHHHHhccccc---------ccc----cccHHHHHHHHHHHHHcCCE
Confidence 367888999999999999973 221 11233455778888888863
No 37
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein, calcium-phospholipid protein complex; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Probab=28.51 E-value=95 Score=20.32 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=12.1
Q ss_pred cccCCCHHHHHHHHh
Q 028628 20 SKKVITREEWEKKLN 34 (206)
Q Consensus 20 ~~~~~~~~~~~~~~~ 34 (206)
++|+|+++|+...+.
T Consensus 21 ~dg~Is~~El~~~l~ 35 (96)
T 1a4p_A 21 DKGYLTKEDLRVLME 35 (96)
T ss_dssp GGCSBCHHHHHHHHH
T ss_pred CCCeECHHHHHHHHH
Confidence 577999999977764
No 38
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=28.28 E-value=36 Score=22.04 Aligned_cols=26 Identities=8% Similarity=0.051 Sum_probs=23.4
Q ss_pred ChhhHHHHHHHHHHHHHhhCCCCCCC
Q 028628 179 DISQRLKTASEVNAAILTSQSHEKGD 204 (206)
Q Consensus 179 ~~~~r~~la~~vN~aiL~~~~~~~~~ 204 (206)
+.++.+++...|.+++...+|.|+++
T Consensus 12 T~EQK~~lI~~VT~a~~eslgap~es 37 (70)
T 3ej9_B 12 SVARKQQLIRDVIDVTNKSIGSDPKI 37 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 47899999999999999999998764
No 39
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=28.22 E-value=2.1e+02 Score=22.09 Aligned_cols=87 Identities=13% Similarity=0.066 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhCCCC--------CccHHHHHH-HHHHHHHHHcCCHHHHHHHHHhhCchhhhcccchhhhhHHHHHHH--
Q 028628 57 VDAAEKFRMESGTEP--------DIDLATITD-RMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIE-- 125 (206)
Q Consensus 57 ~~ta~~f~~e~~~~~--------~~~~~~~~~-r~~I~~~I~~g~i~~Ai~~~~~~~p~l~~~~s~L~F~L~~q~fie-- 125 (206)
.++...+++..|+++ ..+.+.... ...+...+..|++++|+..+++.... ....+.....+.....+-
T Consensus 46 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~ 124 (293)
T 3u3w_A 46 MDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK-EEYHPEFQQFLQWQYYVAAY 124 (293)
T ss_dssp HHHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHHH
Confidence 355556666666642 122333333 34588889999999999998764221 111122111111111111
Q ss_pred HHHcCChHHHHHHHHHhcC
Q 028628 126 LIRNGKVEEALEFAQEELA 144 (206)
Q Consensus 126 li~~~~~~~Al~y~r~~l~ 144 (206)
....++..+|+.+.++-+.
T Consensus 125 ~~~~~~~~~Ai~~~~~al~ 143 (293)
T 3u3w_A 125 VLKKVDYEYCILELKKLLN 143 (293)
T ss_dssp HTTSSCHHHHHHHHHHHHH
T ss_pred HHcccCHHHHHHHHHHHHH
Confidence 1234688999999998765
No 40
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=27.67 E-value=2.1e+02 Score=22.88 Aligned_cols=60 Identities=5% Similarity=-0.014 Sum_probs=27.9
Q ss_pred HHcCCHHHHHHHHHhhCchhhhcccch-hhhhHHHHHHHHHHcCChHHHHHHHHHhcCccc
Q 028628 88 VQCGNVEDAIEKVNDLNPEILDTNPQL-FFHLQQQRLIELIRNGKVEEALEFAQEELAPRG 147 (206)
Q Consensus 88 I~~g~i~~Ai~~~~~~~p~l~~~~s~L-~F~L~~q~fieli~~~~~~~Al~y~r~~l~~~~ 147 (206)
...|+++.|+...++-.......+... .-..+..-=.-....|+..+|+++.++-+.-+.
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 174 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK 174 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 455666666666655432222222221 112221111223345666667777666665544
No 41
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=27.51 E-value=38 Score=22.07 Aligned_cols=29 Identities=7% Similarity=0.047 Sum_probs=21.2
Q ss_pred cccCCCHHHHHHHHhcCCCCHHHHHHHHH
Q 028628 20 SKKVITREEWEKKLNDVKIRKEDMNKLVM 48 (206)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~l~~lI~ 48 (206)
++|.|+.+|+...+.....+...+..++.
T Consensus 22 ~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 22 LNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp TTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57889999998888776666666555543
No 42
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=27.43 E-value=1.2e+02 Score=18.93 Aligned_cols=20 Identities=10% Similarity=0.232 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhCHHHHHHHH
Q 028628 44 NKLVMNFLVTEGYVDAAEKF 63 (206)
Q Consensus 44 ~~lI~~YL~~~Gy~~ta~~f 63 (206)
..-|+++|-.+|-.+-+.++
T Consensus 25 A~tIA~~L~~~~~~eE~v~m 44 (61)
T 3ph0_C 25 AASIADWLAQEECMAECVTL 44 (61)
T ss_dssp HHHHHHHHHTSSTTHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHH
Confidence 45677777777665555444
No 43
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=27.34 E-value=82 Score=19.81 Aligned_cols=30 Identities=17% Similarity=0.338 Sum_probs=20.5
Q ss_pred hccc-CCCHHHHHHHHhc-------CCCCHHHHHHHHH
Q 028628 19 MSKK-VITREEWEKKLND-------VKIRKEDMNKLVM 48 (206)
Q Consensus 19 ~~~~-~~~~~~~~~~~~~-------~~~~~~~l~~lI~ 48 (206)
.++| .|+++|+...+.. .+++...+..++.
T Consensus 22 d~~G~~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~~~ 59 (93)
T 1k2h_A 22 EGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMK 59 (93)
T ss_dssp SSCCSSCCHHHHHHHHHHHTHHHHHCCCCHHHHHHHHH
T ss_pred CCCcCccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3456 9999999888764 4566666655543
No 44
>3sxm_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.55A {Thermotoga maritima} PDB: 3sxk_A 3sxz_A
Probab=27.27 E-value=78 Score=21.85 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhhCc
Q 028628 75 LATITDRMAVKKAVQCGNVEDAIEKVNDLNP 105 (206)
Q Consensus 75 ~~~~~~r~~I~~~I~~g~i~~Ai~~~~~~~p 105 (206)
......=..|.++|.+||.+.|...+..|.-
T Consensus 97 ~~~~~eH~~I~~Ai~~~D~~~A~~~~~~Hl~ 127 (140)
T 3sxm_A 97 VVSNREHKELIERIISGDKEGAIEKLKEHLK 127 (140)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566677788999999999999888877653
No 45
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=26.97 E-value=1.8e+02 Score=21.08 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCCHHHHH-HHHHhhCc
Q 028628 80 DRMAVKKAVQCGNVEDAI-EKVNDLNP 105 (206)
Q Consensus 80 ~r~~I~~~I~~g~i~~Ai-~~~~~~~p 105 (206)
.+.+|.+++.+|++++|. .|++...-
T Consensus 3 ~~~~I~~Ll~~g~~eeAf~~aL~ssd~ 29 (139)
T 2vxg_A 3 MGDSIKQLLMAGQINKAFHQALLANDL 29 (139)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhCcH
Confidence 356799999999999996 67765443
No 46
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=26.35 E-value=80 Score=21.43 Aligned_cols=29 Identities=7% Similarity=0.116 Sum_probs=24.1
Q ss_pred cccCCCHHHHHHHHhcCCCCHHHHHHHHH
Q 028628 20 SKKVITREEWEKKLNDVKIRKEDMNKLVM 48 (206)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~l~~lI~ 48 (206)
++|+|+.+|+...+.+..++...+..++.
T Consensus 27 ~dG~Is~~el~~~l~~~gl~~~el~~i~~ 55 (106)
T 1eh2_A 27 VNGFLSGDKVKPVLLNSKLPVDILGRVWE 55 (106)
T ss_dssp SSSCCBHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 68999999999999888888777777653
No 47
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=26.19 E-value=61 Score=21.08 Aligned_cols=29 Identities=10% Similarity=0.234 Sum_probs=17.4
Q ss_pred cccCCCHHHHHHHHhcC-----CCCHHHHHHHHH
Q 028628 20 SKKVITREEWEKKLNDV-----KIRKEDMNKLVM 48 (206)
Q Consensus 20 ~~~~~~~~~~~~~~~~~-----~~~~~~l~~lI~ 48 (206)
++|.|+.+|+.+.+..+ +++...+..++.
T Consensus 54 ~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~ 87 (108)
T 2pvb_A 54 KSGFIEEDELKLFLQNFSPSARALTDAETKAFLA 87 (108)
T ss_dssp CSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 45677777777766644 455555555543
No 48
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=25.17 E-value=62 Score=23.26 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=22.5
Q ss_pred hcccCCCHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028628 19 MSKKVITREEWEKKLNDVKIRKEDMNKLVMNF 50 (206)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lI~~Y 50 (206)
.++|.|+.+|+...+.+.+++...+..++..+
T Consensus 135 d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~ 166 (191)
T 3khe_A 135 DGSGKITNEELGRLFGVTEVDDETWHQVLQEC 166 (191)
T ss_dssp TCSSEECHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred CCcCcCCHHHHHHHHccCCCCHHHHHHHHHHh
Confidence 35678888888888777777777666665443
No 49
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C
Probab=24.72 E-value=71 Score=28.12 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Q 028628 76 ATITDRMAVKKAVQCGNVEDAIEKVNDLN 104 (206)
Q Consensus 76 ~~~~~r~~I~~~I~~g~i~~Ai~~~~~~~ 104 (206)
+.-...+.|-.+|+.|++++|++||.+.-
T Consensus 176 ~e~~l~~~i~~liR~G~~~eA~~lc~~~g 204 (460)
T 3iko_C 176 EDHIFFKYIYELILAGAIDEALEEAKLSD 204 (460)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 34556788999999999999999998754
No 50
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Probab=23.80 E-value=1.5e+02 Score=19.38 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=17.7
Q ss_pred ccCCCHHHHHHHHhc-C------CCCHHHHHHHHH
Q 028628 21 KKVITREEWEKKLND-V------KIRKEDMNKLVM 48 (206)
Q Consensus 21 ~~~~~~~~~~~~~~~-~------~~~~~~l~~lI~ 48 (206)
+|+||++|+...+.. + +.+...+..++.
T Consensus 26 ~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~ 60 (93)
T 4eto_A 26 KFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS 60 (93)
T ss_dssp TTSBCHHHHHHHHHHHCGGGC---CCHHHHHHHHH
T ss_pred CCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHH
Confidence 369999999877753 2 234555555543
No 51
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=23.51 E-value=28 Score=21.54 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=12.0
Q ss_pred HcCCHHHHHHHHHhh
Q 028628 89 QCGNVEDAIEKVNDL 103 (206)
Q Consensus 89 ~~g~i~~Ai~~~~~~ 103 (206)
..||++.|++|+-.+
T Consensus 42 ~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 42 SGGSVQGALDSLLNG 56 (58)
T ss_dssp HTSCHHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHhC
Confidence 468999999998653
No 52
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=23.36 E-value=75 Score=20.67 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=16.2
Q ss_pred cccCCCHHHHHHHHhcC-----CCCHHHHHHHHH
Q 028628 20 SKKVITREEWEKKLNDV-----KIRKEDMNKLVM 48 (206)
Q Consensus 20 ~~~~~~~~~~~~~~~~~-----~~~~~~l~~lI~ 48 (206)
++|.|+.+|+...+..+ +++...+..++.
T Consensus 55 ~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~ 88 (110)
T 1pva_A 55 ASGFIEEEELKFVLKSFAADGRDLTDAETKAFLK 88 (110)
T ss_dssp CSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 45667777766666543 345555544443
No 53
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.34 E-value=57 Score=18.82 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=12.4
Q ss_pred HHcCCHHHHHHHHHhh
Q 028628 88 VQCGNVEDAIEKVNDL 103 (206)
Q Consensus 88 I~~g~i~~Ai~~~~~~ 103 (206)
...||++.|++|+-.|
T Consensus 31 ~~~~n~e~A~~~L~~h 46 (47)
T 2ekk_A 31 LNTSTMEQATEYLLTH 46 (47)
T ss_dssp HHSCSHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHcC
Confidence 3457999999998654
No 54
>2voi_B BH3-interacting domain death agonist P13; protein-protein complex, BCL-2, membrane, apoptosis, Pro-surviVal, mitochondrion, phosphoprotein; 2.1A {Mus musculus}
Probab=23.09 E-value=47 Score=18.40 Aligned_cols=13 Identities=31% Similarity=0.348 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhhh
Q 028628 7 VIRQLAEIEAMAM 19 (206)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (206)
+.||||.||...|
T Consensus 11 ia~~la~igd~~d 23 (34)
T 2voi_B 11 IARHLAQIGDEMD 23 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHccchhhhhh
Confidence 5789999998765
No 55
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=22.87 E-value=76 Score=18.40 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=10.7
Q ss_pred HcCCHHHHHHHHH
Q 028628 89 QCGNVEDAIEKVN 101 (206)
Q Consensus 89 ~~g~i~~Ai~~~~ 101 (206)
..||++.|++|+-
T Consensus 32 ~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 32 SGGSVQGALDSLL 44 (46)
T ss_dssp HTTCHHHHHHHHH
T ss_pred hCCCHHHHHHHHH
Confidence 4689999999974
No 56
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=22.83 E-value=99 Score=22.21 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=21.9
Q ss_pred hcccCCCHHHHHHHHhcCCCCHHHHHHHHH
Q 028628 19 MSKKVITREEWEKKLNDVKIRKEDMNKLVM 48 (206)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lI~ 48 (206)
.++|.|+.+|+...+....+++..+..++.
T Consensus 121 d~dG~I~~~E~~~~l~~~g~~~~~~~~~~~ 150 (191)
T 2ccm_A 121 SGDNIIDKHEYSTVYMSYGIPKSDCDAAFD 150 (191)
T ss_dssp TCSSBCCHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 467899999998888777666666555443
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=22.74 E-value=2.3e+02 Score=20.68 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCc
Q 028628 26 REEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNP 105 (206)
Q Consensus 26 ~~~~~~~~~~~~~~~~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Ai~~~~~~~p 105 (206)
...+.+.+...+.+......+..-|+...-+.++...|.+-....|. +... ......-....|++++|+.++++...
T Consensus 57 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~--~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 57 KVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARV--LNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH--HHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHH--HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44455555544444444444433343333344444445444443332 1111 12223344667888888888776533
Q ss_pred hhhhcccchhhhhHHHHHHHHHHcCChHHHHHHHHHhc
Q 028628 106 EILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143 (206)
Q Consensus 106 ~l~~~~s~L~F~L~~q~fieli~~~~~~~Al~y~r~~l 143 (206)
....+. ........-.-+...|+..+|+++.++-+
T Consensus 134 --~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 134 --DTLYPE-RSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp --CTTCTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --CccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 001111 11111111112345677777777777644
No 58
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=22.73 E-value=1e+02 Score=18.31 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=12.9
Q ss_pred HcCCHHHHHHHHHhhC
Q 028628 89 QCGNVEDAIEKVNDLN 104 (206)
Q Consensus 89 ~~g~i~~Ai~~~~~~~ 104 (206)
..||++.|++|+-.+-
T Consensus 36 t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 36 TGGDINAAIERLLGSQ 51 (53)
T ss_dssp HTSCHHHHHHHHHHCC
T ss_pred hCCCHHHHHHHHHHcC
Confidence 4689999999987653
No 59
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=22.67 E-value=71 Score=19.32 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=18.5
Q ss_pred hcccCCCHHHHHHHHhcC-CCCHHHHHHHH
Q 028628 19 MSKKVITREEWEKKLNDV-KIRKEDMNKLV 47 (206)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~lI 47 (206)
.++|.|+.+|+...+..+ +.+...+..++
T Consensus 15 ~~~G~i~~~el~~~l~~~g~~~~~~~~~~~ 44 (78)
T 1k9u_A 15 NGDGKISLSELTDALRTLGSTSADEVQRMM 44 (78)
T ss_dssp TCSSEECHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHhCCCCHHHHHHHH
Confidence 467899999997776543 34444444443
No 60
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.51 E-value=80 Score=18.48 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=16.3
Q ss_pred HHHHHHHH--cCCHHHHHHHHHhhCc
Q 028628 82 MAVKKAVQ--CGNVEDAIEKVNDLNP 105 (206)
Q Consensus 82 ~~I~~~I~--~g~i~~Ai~~~~~~~p 105 (206)
...+.++. .||++.|++|+-..-|
T Consensus 23 ~~a~~AL~~~~~n~e~A~e~L~~gip 48 (49)
T 1ify_A 23 ERVVAALRASYNNPHRAVEYLLTGIP 48 (49)
T ss_dssp HHHHHHHHTTTSCSHHHHHHHHHCCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 44555554 4789999999866533
No 61
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=22.50 E-value=61 Score=22.83 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=21.1
Q ss_pred hcccCCCHHHHHHHHhcCCCCHHHHHHHHH
Q 028628 19 MSKKVITREEWEKKLNDVKIRKEDMNKLVM 48 (206)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lI~ 48 (206)
.++|.|+++|+...+....++...++.++.
T Consensus 106 d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~ 135 (174)
T 1q80_A 106 NEDNNISRDEYGIFFGMLGLDKTMAPASFD 135 (174)
T ss_dssp TSSSSBCHHHHHHHHHHHTCCGGGHHHHHH
T ss_pred CCCCcccHHHHHHHHHHcCCCHHHHHHHHH
Confidence 457889999998877766666655555543
No 62
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=22.12 E-value=91 Score=21.53 Aligned_cols=30 Identities=7% Similarity=0.076 Sum_probs=21.6
Q ss_pred hcccCCCHHHHHHHHhcCCCCHHHHHHHHH
Q 028628 19 MSKKVITREEWEKKLNDVKIRKEDMNKLVM 48 (206)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lI~ 48 (206)
.++|.|+.+|+...+....++...+..++.
T Consensus 110 d~~G~i~~~E~~~~l~~~~~~~~~~~~~~~ 139 (166)
T 3akb_A 110 DGDGAVTVADTARALTAFGVPEDLARQAAA 139 (166)
T ss_dssp SSSSCCBHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 457889999998888776666666555544
No 63
>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, late protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB: 3csz_A* 3csr_A* 3ct0_A* 3ct1_A*
Probab=22.05 E-value=1.1e+02 Score=22.68 Aligned_cols=42 Identities=26% Similarity=0.418 Sum_probs=32.5
Q ss_pred cccCCCHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHH-----HHHHhCCCCC
Q 028628 20 SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEK-----FRMESGTEPD 72 (206)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~l~~lI~~YL~~~Gy~~ta~~-----f~~e~~~~~~ 72 (206)
+++++|-.+-.+ -.+-|.+||...|+.+.+.+ +..|+|+.|.
T Consensus 5 ~~~~~t~~~~~~-----------~a~~i~~~l~~~G~s~~~aAGilGN~~~ESg~nP~ 51 (159)
T 3ct5_A 5 SNKYLTMSEMKV-----------NAQYILNYLSSNGWTKQAICGMLGNMQSESTINPG 51 (159)
T ss_dssp SSSCCCHHHHHH-----------HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHTTCTT
T ss_pred cCCCCCHHHHHH-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcc
Confidence 456667666644 36889999999999988755 8889998774
No 64
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=22.04 E-value=83 Score=23.44 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhCc
Q 028628 81 RMAVKKAVQCGNVEDAIEKVNDLNP 105 (206)
Q Consensus 81 r~~I~~~I~~g~i~~Ai~~~~~~~p 105 (206)
-.+|++++..|+..+|++.+=++-|
T Consensus 39 ~~qv~~lL~~g~~~~ALk~~L~~pP 63 (151)
T 1k8k_G 39 EGEVDSCLRQGNMTAALQAALKNPP 63 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTSSCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 4779999999999999999977755
No 65
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=21.76 E-value=1.3e+02 Score=19.03 Aligned_cols=35 Identities=11% Similarity=0.212 Sum_probs=27.3
Q ss_pred HHHHHHHHhhhcccCCCHHHHHHHHhcCCCCHHHH
Q 028628 9 RQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDM 43 (206)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 43 (206)
.||.+++..+-.+.+.|..+..+.-..+.+++..+
T Consensus 14 ~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qV 48 (66)
T 3nau_A 14 EQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEI 48 (66)
T ss_dssp HHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHh
Confidence 58888999999999999999877666666665444
No 66
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=21.74 E-value=41 Score=25.17 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCc
Q 028628 82 MAVKKAVQCGNVEDAIEKVNDLNP 105 (206)
Q Consensus 82 ~~I~~~I~~g~i~~Ai~~~~~~~p 105 (206)
.+|++++..|+..+|++.+=++-|
T Consensus 41 ~qvr~lL~~g~~~~ALk~aL~~pP 64 (152)
T 3dwl_G 41 PQARSAIQTGNALQGLKTLLSYVP 64 (152)
T ss_dssp HHHHHHHHHSCCHHHHHHHTSSCC
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC
Confidence 779999999999999999988755
No 67
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=21.54 E-value=2.2e+02 Score=20.03 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=9.0
Q ss_pred HcCChHHHHHHHHHhc
Q 028628 128 RNGKVEEALEFAQEEL 143 (206)
Q Consensus 128 ~~~~~~~Al~y~r~~l 143 (206)
..|+..+|+.+.++-+
T Consensus 159 ~~~~~~~A~~~~~~~~ 174 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQ 174 (225)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4456666666665533
No 68
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=21.53 E-value=82 Score=20.46 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=8.2
Q ss_pred cccCCCHHHHHHHHhc
Q 028628 20 SKKVITREEWEKKLND 35 (206)
Q Consensus 20 ~~~~~~~~~~~~~~~~ 35 (206)
++|.|+.+|+...+..
T Consensus 55 ~~G~i~~~el~~~l~~ 70 (109)
T 3fs7_A 55 KSGFIEEEELQLFLKN 70 (109)
T ss_dssp CSSSBCHHHHHTTGGG
T ss_pred CCCeEeHHHHHHHHHH
Confidence 3455555555555443
No 69
>2kbw_B BH3-interacting domain death agonist; MCL-1, BID_BH3, complex, alternative splicing, apoptosis, CY developmental protein, differentiation, membrane; NMR {Homo sapiens}
Probab=21.48 E-value=52 Score=18.31 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhhc
Q 028628 7 VIRQLAEIEAMAMS 20 (206)
Q Consensus 7 ~~~~~~~~~~~~~~ 20 (206)
+.||||.||...|.
T Consensus 15 ia~qla~igd~~d~ 28 (35)
T 2kbw_B 15 IARHLAQVGDSMDR 28 (35)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHccchhhhhhc
Confidence 57899999987663
No 70
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=21.44 E-value=71 Score=20.78 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=6.5
Q ss_pred cccCCCHHHHHHHH
Q 028628 20 SKKVITREEWEKKL 33 (206)
Q Consensus 20 ~~~~~~~~~~~~~~ 33 (206)
+++.|+.+||...+
T Consensus 21 ~~g~i~~~eF~~~~ 34 (109)
T 1bu3_A 21 AADSFNYKAFFAKV 34 (109)
T ss_dssp STTCCCHHHHHHHH
T ss_pred CCCcCcHHHHHHHH
Confidence 34444544444444
No 71
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=21.36 E-value=86 Score=18.82 Aligned_cols=27 Identities=7% Similarity=0.204 Sum_probs=23.5
Q ss_pred cChhhHHHHHHHHHHHHHhhCCCCCCC
Q 028628 178 LDISQRLKTASEVNAAILTSQSHEKGD 204 (206)
Q Consensus 178 l~~~~r~~la~~vN~aiL~~~~~~~~~ 204 (206)
.+.++..+++..+..++-..+|.|++.
T Consensus 10 rt~eqK~~L~~~it~~~~~~lg~~~~~ 36 (62)
T 3m20_A 10 LDVGKKREFVERLTSVAAEIYGMDRSA 36 (62)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcce
Confidence 467889999999999999999998764
No 72
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=21.06 E-value=95 Score=19.44 Aligned_cols=30 Identities=10% Similarity=0.267 Sum_probs=20.9
Q ss_pred hcccCCCHHHHHHHHhcCC--CCHHHHHHHHH
Q 028628 19 MSKKVITREEWEKKLNDVK--IRKEDMNKLVM 48 (206)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~--~~~~~l~~lI~ 48 (206)
.++|.|+.+++...+..+. ++...+..++.
T Consensus 21 d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 52 (92)
T 2kn2_A 21 DQNGYISASELRHVMINLGEKLTDEEVEQMIK 52 (92)
T ss_dssp TCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4578999999988887654 55555555543
No 73
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=20.77 E-value=86 Score=19.34 Aligned_cols=30 Identities=10% Similarity=0.281 Sum_probs=20.4
Q ss_pred hcccCCCHHHHHHHHhcCC-CCHHHHHHHHH
Q 028628 19 MSKKVITREEWEKKLNDVK-IRKEDMNKLVM 48 (206)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~lI~ 48 (206)
.++|.|+++|+...+.... .+...+..++.
T Consensus 23 d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 23 NGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp TCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4578999999988887653 55555554443
No 74
>2bid_A Protein (BID); programmed cell death, apoptosis regulation and amplification; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=20.62 E-value=70 Score=24.68 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhhcccCCCHHHHHHHHhcCCCCHHHHHHHHHHHHHhhC
Q 028628 7 VIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEG 55 (206)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lI~~YL~~~G 55 (206)
+.||||+||-..+. ++.+..++.++..++..+=
T Consensus 88 IA~qLAqiGD~md~----------------sI~P~lV~~La~qf~N~~l 120 (197)
T 2bid_A 88 IARHLAQVGDSMDR----------------SIPPGLVNGLALQLRNTSR 120 (197)
T ss_dssp HHHHHHHHHHHHHT----------------TCCTTCHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHHHhc----------------cCChHHHHHHHHHHHhcCc
Confidence 56889988866332 5566677888888776653
No 75
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=20.39 E-value=1.1e+02 Score=19.08 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=21.1
Q ss_pred hcccCCCHHHHHHHHhcC--CCCHHHHHHHHH
Q 028628 19 MSKKVITREEWEKKLNDV--KIRKEDMNKLVM 48 (206)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~--~~~~~~l~~lI~ 48 (206)
.++|.|+.+++...+..+ +++...+..++.
T Consensus 32 d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 32 DGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp TCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 467899999998888755 455666655543
No 76
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=20.36 E-value=1.3e+02 Score=20.27 Aligned_cols=32 Identities=9% Similarity=0.278 Sum_probs=22.2
Q ss_pred hcccCCCHHHHHHHHhc---CCCCHHHHHHHHHHH
Q 028628 19 MSKKVITREEWEKKLND---VKIRKEDMNKLVMNF 50 (206)
Q Consensus 19 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~lI~~Y 50 (206)
..+|.|+++|+...+.. .+++...+..++..+
T Consensus 100 d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 134 (153)
T 3ox6_A 100 NGDGEISTSELREAMRALLGHQVGHRDIEEIIRDV 134 (153)
T ss_dssp TCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 35789999999887744 456666666665443
No 77
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=20.32 E-value=85 Score=20.32 Aligned_cols=14 Identities=21% Similarity=0.264 Sum_probs=6.5
Q ss_pred ccCCCHHHHHHHHh
Q 028628 21 KKVITREEWEKKLN 34 (206)
Q Consensus 21 ~~~~~~~~~~~~~~ 34 (206)
+|.|+.+|+...+.
T Consensus 55 ~G~I~~~el~~~l~ 68 (109)
T 1rwy_A 55 SGFIEEDELGSILK 68 (109)
T ss_dssp SSEECHHHHHTHHH
T ss_pred CCeEcHHHHHHHHH
Confidence 34455555444443
No 78
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=20.18 E-value=94 Score=20.66 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=20.7
Q ss_pred ChhhHHHHHHHHHHHHHhhCCCCC
Q 028628 179 DISQRLKTASEVNAAILTSQSHEK 202 (206)
Q Consensus 179 ~~~~r~~la~~vN~aiL~~~~~~~ 202 (206)
.+..|..+|+.|-.|+..+...++
T Consensus 50 ~~~qR~~iAe~Fa~AL~~Svk~~~ 73 (83)
T 2jrx_A 50 APAQRQAIANSFARALQSSINEDK 73 (83)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCSSC
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCc
Confidence 478899999999999999987644
No 79
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=20.03 E-value=1.1e+02 Score=20.25 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=16.9
Q ss_pred HHHHHHH-Hc--CCHHHHHHHHHhhCc
Q 028628 82 MAVKKAV-QC--GNVEDAIEKVNDLNP 105 (206)
Q Consensus 82 ~~I~~~I-~~--g~i~~Ai~~~~~~~p 105 (206)
.+.+.++ .. ++++.|+.|+-.|.+
T Consensus 44 ~~a~~AL~~t~n~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 44 LHCQKAAINTSNAGVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 3455554 33 589999999988764
Done!