Citrus Sinensis ID: 028629

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNSAR
Secondary Structure (PSIPRED)
ccccccccccEEEEcHHHHHHHHcccccccccccccccccEEEEEccccEEEEEEEccccccHHHHHHHHHHHHHcccccccccEEEEEccccccccccccEEEEEEEEccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHccccHHccccccccccEEccEcccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccEEEEEEEcccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHEEcccccccHcHccHHEEccccccccEEEEccccccHHHHcc
Coil and Loop (DISEMBL)
mklgalglpayrtfSLEELEEAtnnfdtsafmgegskgqmyrgrlkngTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSalghcfecyfddssvsRIFLIFEyvpngtlrswiseghawqslTWTQRISAAIGVARGIQflhtgivpgvfsnnlkiTDILLDQNLVAKIssynlpllaenaekvghvtpysgsinptnsar
Flexible Loop (DISEMBL)
mklgalglpayRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENaekvghvtpysgsinptnsar
Low Complexity Region (SEG)
MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNSAR
Disordered region (IsUnstruct)
********PAYRTFSL**********************QMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGH***************
Disordered Region (DISOPRED)
**********YRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIA****************HHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNSA*
Disordered Region (DISEMBL)
MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNSAR
Disordered Region (DISPRO)
****ALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNSAR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNSAR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
Q8LFN2	802	Probable inactive leucine	yes	no	0.956	0.245	0.776	9e-90
Q9M9S4	728	Probable LRR receptor-lik	no	no	0.902	0.255	0.494	4e-52
C0LGJ9	742	Probable LRR receptor-lik	no	no	0.902	0.250	0.454	2e-45
Q9LK35	855	Receptor-like protein kin	no	no	0.776	0.187	0.404	2e-31
Q9SJT0	871	Probable receptor-like pr	no	no	0.800	0.189	0.411	1e-30
Q9FID9	880	Probable receptor-like pr	no	no	0.849	0.198	0.362	1e-30
Q9SA72	849	Probable receptor-like pr	no	no	0.776	0.188	0.422	2e-30
Q9T020	878	Probable receptor-like pr	no	no	0.776	0.182	0.404	3e-30
Q9FLJ8	842	Probable receptor-like pr	no	no	0.839	0.205	0.385	8e-30
Q9FID8	873	Putative receptor-like pr	no	no	0.883	0.208	0.350	1e-29

>sp|Q8LFN2|Y3037_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana GN=At3g03770 PE=2 SV=1

 Score =  329 bits (843), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 153/197 (77%), Positives = 172/197 (87%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           MKLG LGLPAYRTFSLEELE ATNNF++SAFMGEGS+GQ+YRGRLK+G+F+AIRCLKMKK
Sbjct: 452 MKLGGLGLPAYRTFSLEELEYATNNFESSAFMGEGSQGQIYRGRLKDGSFVAIRCLKMKK 511

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISE 120
           S ST+N MHHIELI+KLRH HLVS LGHCFECY DDS+VSR+F +FEYVPNG LR+WIS+
Sbjct: 512 SCSTQNLMHHIELIAKLRHRHLVSVLGHCFECYLDDSTVSRMFFVFEYVPNGELRTWISD 571

Query: 121 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 180
           GH  + LTW QRIS AIGVA+GIQFLHTGIVPGV+ NNLK+TDILLD NL AK+SSYNLP
Sbjct: 572 GHMGRLLTWEQRISVAIGVAKGIQFLHTGIVPGVYDNNLKMTDILLDNNLAAKLSSYNLP 631

Query: 181 LLAENAEKVGHVTPYSG 197
           LL E   KVG V   SG
Sbjct: 632 LLVEGLGKVGQVGSRSG 648

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9S4|Y1143_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g14390 OS=Arabidopsis thaliana GN=At1g14390 PE=2 SV=1

 Score =  204 bits (518), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 97/196 (49%), Positives = 133/196 (67%), Gaps = 10/196 (5%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           M+   +GL  YR FSLEELEEATNNFD     GE    Q+Y+G L+ G  + +RC+K+K+
Sbjct: 422 MRSAVIGLSPYRVFSLEELEEATNNFDAENLCGE----QLYKGCLREGIAVTVRCIKLKQ 477

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD--DSSVSRIFLIFEYVPNGTLRSWI 118
            +ST+N    +E++SKLRH HLVS LGHC   Y D    + S IF++ EY+ NG+LR ++
Sbjct: 478 KNSTQNLAQQMEVLSKLRHMHLVSVLGHCIGTYQDHHPYAGSTIFIVQEYISNGSLRDYL 537

Query: 119 SEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN 178
           ++    + L W QR+S AIGVARGIQFLHTG+ PG+F NNL+I ++LLD+ L  K+S Y+
Sbjct: 538 TDWRKKEVLKWPQRMSIAIGVARGIQFLHTGVAPGIFGNNLEIENVLLDETLTVKLSGYS 597

Query: 179 LPLLAENAEKVGHVTP 194
           +PL      KVG  +P
Sbjct: 598 IPL----PSKVGAESP 609

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGJ9|Y2278_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g02780 OS=Arabidopsis thaliana GN=At2g02780 PE=2 SV=1

 Score =  182 bits (461), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/196 (45%), Positives = 125/196 (63%), Gaps = 10/196 (5%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           M+   +GLP YR FSLEELEEATN+FD ++   E    Q+YRG L+ G  + +R +K+K+
Sbjct: 427 MRSAVIGLPPYRVFSLEELEEATNDFDAASLFCE----QLYRGCLREGIPVTVRVIKLKQ 482

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS--RIFLIFEYVPNGTLRSWI 118
               ++    +E++SKLRH HLVS LGH      D +  +   IF++ EY+ +G+LR ++
Sbjct: 483 KSLPQSLAQQMEVLSKLRHMHLVSVLGHSIASNQDHNQHAGHTIFIVQEYISSGSLRDFL 542

Query: 119 SEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN 178
           +     + L W QR++ AIGVARGIQFLH G+ PG+F NNLKI +I+LD+ L  KIS Y 
Sbjct: 543 TNCRKKEVLKWPQRMAIAIGVARGIQFLHMGVAPGIFGNNLKIENIMLDETLTVKISGYT 602

Query: 179 LPLLAENAEKVGHVTP 194
           +PL      KVG   P
Sbjct: 603 IPL----PSKVGEERP 614

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LK35|THE1_ARATH Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1

 Score =  135 bits (339), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 103/168 (61%), Gaps = 8/168 (4%)

Query: 12  RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHI 71
           R F  +E+ +ATN FD S+ +G G  G++Y+G L++GT +A++    +       F   I
Sbjct: 496 RCFMFQEIMDATNKFDESSLLGVGGFGRVYKGTLEDGTKVAVKRGNPRSEQGMAEFRTEI 555

Query: 72  ELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQ 131
           E++SKLRH HLVS +G+C E        S + L++EY+ NG LRS +  G     L+W Q
Sbjct: 556 EMLSKLRHRHLVSLIGYCDE-------RSEMILVYEYMANGPLRSHL-YGADLPPLSWKQ 607

Query: 132 RISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           R+   IG ARG+ +LHTG    +   ++K T+ILLD+NLVAK++ + L
Sbjct: 608 RLEICIGAARGLHYLHTGASQSIIHRDVKTTNILLDENLVAKVADFGL 655

Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner. Mediates the response of growing plant cells to the perturbation of cellulose synthesis and may act as a cell-wall-integrity sensor. Controls ectopic-lignin accumulation in cellulose-deficient mutant backgrounds.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9SJT0|Y2214_ARATH Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana GN=At2g21480 PE=3 SV=1

 Score =  133 bits (334), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/175 (41%), Positives = 102/175 (58%), Gaps = 10/175 (5%)

Query: 5   ALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST 64
           ALGL  Y  FSL EL+E T NFD S  +G G  G +Y G + +GT +AI+    +     
Sbjct: 506 ALGLGRY--FSLSELQEVTKNFDASEIIGVGGFGNVYIGTIDDGTQVAIKRGNPQSEQGI 563

Query: 65  RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAW 124
             F   I+++SKLRH HLVS +G+C E        + + L++EY+ NG  R  +  G   
Sbjct: 564 TEFHTEIQMLSKLRHRHLVSLIGYCDEN-------AEMILVYEYMSNGPFRDHLY-GKNL 615

Query: 125 QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
             LTW QR+   IG ARG+ +LHTG   G+   ++K T+ILLD+ LVAK++ + L
Sbjct: 616 SPLTWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKSTNILLDEALVAKVADFGL 670

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9FID9|Y5389_ARATH Probable receptor-like protein kinase At5g38990 OS=Arabidopsis thaliana GN=At5g38990 PE=2 SV=1

 Score =  133 bits (334), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 113/185 (61%), Gaps = 10/185 (5%)

Query: 12  RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNG-TFIAIRCLKMKKSHSTRNFMHH 70
           R FS+ E++ ATN+F+    +G G  G +Y+GR+  G T +A++ L++  +   + F   
Sbjct: 511 RRFSIYEIKSATNDFEEKLIIGVGGFGSVYKGRIDGGATLVAVKRLEITSNQGAKEFDTE 570

Query: 71  IELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI--SEGHAWQSLT 128
           +E++SKLRH HLVS +G+C     DD +   + L++EY+P+GTL+  +   +  +   L+
Sbjct: 571 LEMLSKLRHVHLVSLIGYC-----DDDN--EMVLVYEYMPHGTLKDHLFRRDKASDPPLS 623

Query: 129 WTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK 188
           W +R+   IG ARG+Q+LHTG    +   ++K T+ILLD+N VAK+S + L  +   +  
Sbjct: 624 WKRRLEICIGAARGLQYLHTGAKYTIIHRDIKTTNILLDENFVAKVSDFGLSRVGPTSAS 683

Query: 189 VGHVT 193
             HV+
Sbjct: 684 QTHVS 688

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9SA72|Y1357_ARATH Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=1 SV=1

 Score =  132 bits (331), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/168 (42%), Positives = 100/168 (59%), Gaps = 8/168 (4%)

Query: 12  RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHI 71
           R F+L E+  AT NFD    +G G  G++YRG L++GT IAI+            F   I
Sbjct: 506 RKFTLAEIRAATKNFDDGLAIGVGGFGKVYRGELEDGTLIAIKRATPHSQQGLAEFETEI 565

Query: 72  ELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQ 131
            ++S+LRH HLVS +G C E        + + L++EY+ NGTLRS +  G     L+W Q
Sbjct: 566 VMLSRLRHRHLVSLIGFCDEH-------NEMILVYEYMANGTLRSHLF-GSNLPPLSWKQ 617

Query: 132 RISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           R+ A IG ARG+ +LHTG   G+   ++K T+ILLD+N VAK+S + L
Sbjct: 618 RLEACIGSARGLHYLHTGSERGIIHRDVKTTNILLDENFVAKMSDFGL 665

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9T020|Y4391_ARATH Probable receptor-like protein kinase At4g39110 OS=Arabidopsis thaliana GN=At4g39110 PE=1 SV=1

 Score =  131 bits (330), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 99/168 (58%), Gaps = 8/168 (4%)

Query: 12  RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHI 71
           R FSL EL+EAT NF+ S  +G G  G +Y G L +GT +A++    +       F   I
Sbjct: 512 RYFSLSELQEATKNFEASQIIGVGGFGNVYIGTLDDGTKVAVKRGNPQSEQGITEFQTEI 571

Query: 72  ELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQ 131
           +++SKLRH HLVS +G+C E        S + L++E++ NG  R  +  G     LTW Q
Sbjct: 572 QMLSKLRHRHLVSLIGYCDEN-------SEMILVYEFMSNGPFRDHLY-GKNLAPLTWKQ 623

Query: 132 RISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           R+   IG ARG+ +LHTG   G+   ++K T+ILLD+ LVAK++ + L
Sbjct: 624 RLEICIGSARGLHYLHTGTAQGIIHRDVKSTNILLDEALVAKVADFGL 671

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9FLJ8|Y5613_ARATH Probable receptor-like protein kinase At5g61350 OS=Arabidopsis thaliana GN=At5g61350 PE=2 SV=1

 Score =  130 bits (326), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 72/187 (38%), Positives = 104/187 (55%), Gaps = 14/187 (7%)

Query: 12  RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHI 71
           R F   EL+ AT NFD +A  G G  G++Y G +  GT +AI+            F   I
Sbjct: 511 RYFPFTELQTATQNFDENAVCGVGGFGKVYIGEIDGGTQVAIKRGSQSSEQGINEFQTEI 570

Query: 72  ELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI-----SEGHAWQS 126
           +++SKLRH HLVS +G C E          + L++EY+ NG LR  +     ++ +   +
Sbjct: 571 QMLSKLRHRHLVSLIGFCDEN-------KEMILVYEYMSNGPLRDHLYGSKENDPNPIPT 623

Query: 127 LTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENA 186
           L+W QR+   IG ARG+ +LHTG   G+   ++K T+ILLD+NLVAK+S + L   A   
Sbjct: 624 LSWKQRLEICIGSARGLHYLHTGAAQGIIHRDVKTTNILLDENLVAKVSDFGLSKDAPMD 683

Query: 187 EKVGHVT 193
           E  GHV+
Sbjct: 684 E--GHVS 688

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9FID8|Y5900_ARATH Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana GN=At5g39000 PE=3 SV=1

 Score =  129 bits (325), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 115/194 (59%), Gaps = 12/194 (6%)

Query: 5   ALGLPAY--RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNG-TFIAIRCLKMKKS 61
           A  LPA   R FS+ E++ ATN+F+    +G G  G +Y+G++  G T +A++ L++  +
Sbjct: 495 AKSLPADLCRRFSIFEIKSATNDFEDKLIIGVGGFGSVYKGQIDGGATLVAVKRLEITSN 554

Query: 62  HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI--S 119
              + F   +E++SKLRH HLVS +G+C E        + + L++EY+P+GTL+  +   
Sbjct: 555 QGAKEFETELEMLSKLRHVHLVSLIGYCDED-------NEMVLVYEYMPHGTLKDHLFRR 607

Query: 120 EGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           +  +   L+W +R+   IG ARG+Q+LHTG    +   ++K T+ILLD+N V K+S + L
Sbjct: 608 DKTSDPPLSWKRRLEICIGAARGLQYLHTGAKYTIIHRDIKTTNILLDENFVTKVSDFGL 667

Query: 180 PLLAENAEKVGHVT 193
             +   +    HV+
Sbjct: 668 SRVGPTSASQTHVS 681

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
224144836	774	predicted protein [Populus trichocarpa]	1.0	0.266	0.834	1e-100
255569464	782	leucine-rich repeat protein, putative [R	1.0	0.263	0.810	6e-98
225439195	786	PREDICTED: probable inactive leucine-ric	0.917	0.240	0.862	5e-94
224123880	784	predicted protein [Populus trichocarpa]	1.0	0.262	0.815	7e-94
147854936	746	hypothetical protein VITISV_020032 [Viti	0.917	0.253	0.862	8e-94
297833056	802	hypothetical protein ARALYDRAFT_477625 [	0.956	0.245	0.791	3e-89
18396660	802	leucine-rich repeat protein kinase-like	0.956	0.245	0.776	5e-88
6006864	803	hypothetical protein [Arabidopsis thalia	0.917	0.235	0.783	8e-86
27311539	652	expressed protein [Arabidopsis thaliana]	0.917	0.289	0.783	9e-86
357508805	774	hypothetical protein MTR_7g086420 [Medic	0.883	0.235	0.774	2e-82

>gi|224144836|ref|XP_002325432.1| predicted protein [Populus trichocarpa] gi|222862307|gb|EEE99813.1| predicted protein [Populus trichocarpa]

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/206 (83%), Positives = 187/206 (90%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           MKLGALGLP YRTFSLEE+EEATNNFDTSAFMGEGS+GQMYRGRLK+G+F+AIRCLKMK+
Sbjct: 450 MKLGALGLPPYRTFSLEEVEEATNNFDTSAFMGEGSQGQMYRGRLKDGSFVAIRCLKMKR 509

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISE 120
           SHST+NFMHHIELISKLRH HLVSALGHCFECY DDSSVSRIFL+FEYVPNGTLRSWIS 
Sbjct: 510 SHSTQNFMHHIELISKLRHRHLVSALGHCFECYLDDSSVSRIFLVFEYVPNGTLRSWISG 569

Query: 121 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 180
           GHAWQ L WT RI+AAIGVA+GIQFLHTGIVPGV+SNNLKITD+LLDQNL+AKISSYNLP
Sbjct: 570 GHAWQKLQWTHRIAAAIGVAKGIQFLHTGIVPGVYSNNLKITDVLLDQNLIAKISSYNLP 629

Query: 181 LLAENAEKVGHVTPYSGSINPTNSAR 206
           LLAEN   V H T    S + + SAR
Sbjct: 630 LLAENKGMVVHGTSSGASKDLSTSAR 655

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569464|ref|XP_002525699.1| leucine-rich repeat protein, putative [Ricinus communis] gi|223534999|gb|EEF36682.1| leucine-rich repeat protein, putative [Ricinus communis]

 Score =  362 bits (929), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 167/206 (81%), Positives = 187/206 (90%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           MKLGALG+PAYRTFSLEELEEATNNFDTSAF+GEGS+GQMYRGRLKNG+++AIRCLKMK+
Sbjct: 450 MKLGALGIPAYRTFSLEELEEATNNFDTSAFIGEGSQGQMYRGRLKNGSYVAIRCLKMKR 509

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISE 120
           S+ST+NFMHHIELISKLRH HL+SALGHCFECY DDSSVSRIFL+FEYVPNGTLRSWISE
Sbjct: 510 SYSTQNFMHHIELISKLRHRHLISALGHCFECYLDDSSVSRIFLVFEYVPNGTLRSWISE 569

Query: 121 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 180
             + Q+L W QRI+AAIGVA+GIQFLHTGI+PGV+S NLKITD+LLDQNLVAKI SYNLP
Sbjct: 570 KRSRQTLNWAQRIAAAIGVAKGIQFLHTGILPGVYSKNLKITDVLLDQNLVAKICSYNLP 629

Query: 181 LLAENAEKVGHVTPYSGSINPTNSAR 206
           LLAENA K+GH     GS +P   AR
Sbjct: 630 LLAENAGKIGHGVSSGGSTDPITVAR 655

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439195|ref|XP_002269509.1| PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Vitis vinifera] gi|296085894|emb|CBI31218.3| unnamed protein product [Vitis vinifera]

 Score =  349 bits (895), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 163/189 (86%), Positives = 179/189 (94%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           M LGALGLPAYRTFSLEELEEATNNFDTS FMGEGS+GQMYRG+LK+G+ +AIRCLKMKK
Sbjct: 452 MNLGALGLPAYRTFSLEELEEATNNFDTSTFMGEGSQGQMYRGKLKDGSLVAIRCLKMKK 511

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISE 120
           SHST+NFMHHIELI KLRH HLVS+LGHCFECY DD+SVSRIFLIFEYVPNGTLRSWISE
Sbjct: 512 SHSTQNFMHHIELILKLRHRHLVSSLGHCFECYLDDASVSRIFLIFEYVPNGTLRSWISE 571

Query: 121 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 180
           G + Q+L+WTQRI+AAIGVA+GI+FLHTGI+PGV+SNNLKITDILLDQNLVAKISSYNLP
Sbjct: 572 GRSRQTLSWTQRIAAAIGVAKGIEFLHTGILPGVYSNNLKITDILLDQNLVAKISSYNLP 631

Query: 181 LLAENAEKV 189
           LLAEN  KV
Sbjct: 632 LLAENMGKV 640

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123880|ref|XP_002319187.1| predicted protein [Populus trichocarpa] gi|222857563|gb|EEE95110.1| predicted protein [Populus trichocarpa]

 Score =  348 bits (893), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 168/206 (81%), Positives = 182/206 (88%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGS+GQ+YRGRLK+G+F+ IRCLKMK+
Sbjct: 450 MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSQGQIYRGRLKDGSFVVIRCLKMKR 509

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISE 120
           SH T NFMHHIELISKLRH HLVSALGH FE Y DDSSVSRIFL+FEYVPNGTLRSWIS 
Sbjct: 510 SHGTHNFMHHIELISKLRHRHLVSALGHGFEYYLDDSSVSRIFLVFEYVPNGTLRSWISG 569

Query: 121 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 180
           GHA Q + WT RI+AAIGVA+GIQFLHTGIVPGV+SNNLKITD+LLDQNLVAKISSYNLP
Sbjct: 570 GHARQKIHWTHRIAAAIGVAKGIQFLHTGIVPGVYSNNLKITDVLLDQNLVAKISSYNLP 629

Query: 181 LLAENAEKVGHVTPYSGSINPTNSAR 206
           LLAEN   VGH      S + + SAR
Sbjct: 630 LLAENRGMVGHGASSGASKDLSLSAR 655

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147854936|emb|CAN80270.1| hypothetical protein VITISV_020032 [Vitis vinifera]

 Score =  348 bits (893), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 163/189 (86%), Positives = 179/189 (94%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           M LGALGLPAYRTFSLEELEEATNNFDTS FMGEGS+GQMYRG+LK+G+ +AIRCLKMKK
Sbjct: 412 MNLGALGLPAYRTFSLEELEEATNNFDTSTFMGEGSQGQMYRGKLKDGSLVAIRCLKMKK 471

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISE 120
           SHST+NFMHHIELI KLRH HLVS+LGHCFECY DD+SVSRIFLIFEYVPNGTLRSWISE
Sbjct: 472 SHSTQNFMHHIELILKLRHRHLVSSLGHCFECYLDDASVSRIFLIFEYVPNGTLRSWISE 531

Query: 121 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 180
           G + Q+L+WTQRI+AAIGVA+GI+FLHTGI+PGV+SNNLKITDILLDQNLVAKISSYNLP
Sbjct: 532 GRSRQTLSWTQRIAAAIGVAKGIEFLHTGILPGVYSNNLKITDILLDQNLVAKISSYNLP 591

Query: 181 LLAENAEKV 189
           LLAEN  KV
Sbjct: 592 LLAENMGKV 600

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833056|ref|XP_002884410.1| hypothetical protein ARALYDRAFT_477625 [Arabidopsis lyrata subsp. lyrata] gi|297330250|gb|EFH60669.1| hypothetical protein ARALYDRAFT_477625 [Arabidopsis lyrata subsp. lyrata]

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 156/197 (79%), Positives = 173/197 (87%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           MKLGALGLPAYRTFSLEELE ATNNF++SAFMGEGS+GQ+YRGRLK+G+F+AIRCLKMKK
Sbjct: 452 MKLGALGLPAYRTFSLEELEYATNNFESSAFMGEGSQGQIYRGRLKDGSFVAIRCLKMKK 511

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISE 120
           S ST+N MHHIELI+KLRH HLVS LGHCFECY DDS+VSR+F +FEYVPNG LRSWIS+
Sbjct: 512 SCSTQNLMHHIELIAKLRHRHLVSVLGHCFECYLDDSTVSRMFFVFEYVPNGELRSWISD 571

Query: 121 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 180
           GH  + LTW QRIS AIGVA+GIQFLHTGIVPGV+ NNLKITDILLD NL AK+SSYNLP
Sbjct: 572 GHMGRLLTWEQRISVAIGVAKGIQFLHTGIVPGVYDNNLKITDILLDNNLAAKVSSYNLP 631

Query: 181 LLAENAEKVGHVTPYSG 197
           LL E   KVG V   SG
Sbjct: 632 LLVEGLGKVGQVGSRSG 648

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396660|ref|NP_566213.1| leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] gi|334185060|ref|NP_001189801.1| leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] gi|75155911|sp|Q8LFN2.1|Y3037_ARATH RecName: Full=Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770; Flags: Precursor gi|21536973|gb|AAM61314.1| unknown [Arabidopsis thaliana] gi|224589557|gb|ACN59312.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gi|332640463|gb|AEE73984.1| leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] gi|332640464|gb|AEE73985.1| leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]

 Score =  329 bits (843), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 153/197 (77%), Positives = 172/197 (87%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           MKLG LGLPAYRTFSLEELE ATNNF++SAFMGEGS+GQ+YRGRLK+G+F+AIRCLKMKK
Sbjct: 452 MKLGGLGLPAYRTFSLEELEYATNNFESSAFMGEGSQGQIYRGRLKDGSFVAIRCLKMKK 511

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISE 120
           S ST+N MHHIELI+KLRH HLVS LGHCFECY DDS+VSR+F +FEYVPNG LR+WIS+
Sbjct: 512 SCSTQNLMHHIELIAKLRHRHLVSVLGHCFECYLDDSTVSRMFFVFEYVPNGELRTWISD 571

Query: 121 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 180
           GH  + LTW QRIS AIGVA+GIQFLHTGIVPGV+ NNLK+TDILLD NL AK+SSYNLP
Sbjct: 572 GHMGRLLTWEQRISVAIGVAKGIQFLHTGIVPGVYDNNLKMTDILLDNNLAAKLSSYNLP 631

Query: 181 LLAENAEKVGHVTPYSG 197
           LL E   KVG V   SG
Sbjct: 632 LLVEGLGKVGQVGSRSG 648

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6006864|gb|AAF00640.1|AC009540_17 hypothetical protein [Arabidopsis thaliana]

 Score =  322 bits (824), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 148/189 (78%), Positives = 168/189 (88%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           MKLG LGLPAYRTFSLEELE ATNNF++SAFMGEGS+GQ+YRGRLK+G+F+AIRCLKMKK
Sbjct: 452 MKLGGLGLPAYRTFSLEELEYATNNFESSAFMGEGSQGQIYRGRLKDGSFVAIRCLKMKK 511

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISE 120
           S ST+N MHHIELI+KLRH HLVS LGHCFECY DDS+VSR+F +FEYVPNG LR+WIS+
Sbjct: 512 SCSTQNLMHHIELIAKLRHRHLVSVLGHCFECYLDDSTVSRMFFVFEYVPNGELRTWISD 571

Query: 121 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 180
           GH  + LTW QRIS AIGVA+GIQFLHTGIVPGV+ NNLK+TDILLD NL AK+SSYNLP
Sbjct: 572 GHMGRLLTWEQRISVAIGVAKGIQFLHTGIVPGVYDNNLKMTDILLDNNLAAKLSSYNLP 631

Query: 181 LLAENAEKV 189
           LL E   K+
Sbjct: 632 LLVEGLGKL 640

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27311539|gb|AAO00735.1| expressed protein [Arabidopsis thaliana]

 Score =  321 bits (823), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 148/189 (78%), Positives = 168/189 (88%)

Query: 1   MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
           MKLG LGLPAYRTFSLEELE ATNNF++SAFMGEGS+GQ+YRGRLK+G+F+AIRCLKMKK
Sbjct: 452 MKLGGLGLPAYRTFSLEELEYATNNFESSAFMGEGSQGQIYRGRLKDGSFVAIRCLKMKK 511

Query: 61  SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISE 120
           S ST+N MHHIELI+KLRH HLVS LGHCFECY DDS+VSR+F +FEYVP+G LR+WIS+
Sbjct: 512 SCSTQNLMHHIELIAKLRHRHLVSVLGHCFECYLDDSTVSRMFFVFEYVPDGELRTWISD 571

Query: 121 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 180
           GH  + LTW QRIS AIGVA+GIQFLHTGIVPGV+ NNLK+TDILLD NL AK+SSYNLP
Sbjct: 572 GHMGRLLTWEQRISVAIGVAKGIQFLHTGIVPGVYDNNLKMTDILLDNNLAAKLSSYNLP 631

Query: 181 LLAENAEKV 189
           LL E   KV
Sbjct: 632 LLVEGLGKV 640

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508805|ref|XP_003624691.1| hypothetical protein MTR_7g086420 [Medicago truncatula] gi|87162732|gb|ABD28527.1| Protein kinase [Medicago truncatula] gi|355499706|gb|AES80909.1| hypothetical protein MTR_7g086420 [Medicago truncatula]

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 141/182 (77%), Positives = 163/182 (89%)

Query: 2   KLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS 61
           K GALGLP YR+FSLEE+E ATNNFDT++ MGE S G+MYRG+LKNG+ + IRC+KMKK 
Sbjct: 444 KFGALGLPTYRSFSLEEIEAATNNFDTASLMGEDSYGEMYRGQLKNGSIVVIRCIKMKKR 503

Query: 62  HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEG 121
           +ST+NFMHH+ELISKLRH HLVSALGHCF+C  +DSSVS+IFL+FEYVPNGTLRSW S+G
Sbjct: 504 YSTQNFMHHMELISKLRHRHLVSALGHCFKCSLEDSSVSKIFLVFEYVPNGTLRSWTSDG 563

Query: 122 HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL 181
           H  +SL WTQRI AAIGVA+GIQFLHTGIVPGV+SNN+KI DILLD NLVAKISSYNLPL
Sbjct: 564 HTGRSLNWTQRIGAAIGVAKGIQFLHTGIVPGVYSNNIKIEDILLDHNLVAKISSYNLPL 623

Query: 182 LA 183
           L+
Sbjct: 624 LS 625

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
TAIR|locus:2079339	802	AT3G03770 [Arabidopsis thalian	0.956	0.245	0.776	6.6e-81
TAIR|locus:2167326	680	AT5G63410 [Arabidopsis thalian	0.888	0.269	0.464	1.9e-44
TAIR|locus:2050080	871	AT2G21480 [Arabidopsis thalian	0.800	0.189	0.411	1.9e-30
TAIR|locus:2151349	855	THE1 "THESEUS1" [Arabidopsis t	0.864	0.208	0.388	1e-29
TAIR|locus:2136338	878	AT4G39110 [Arabidopsis thalian	0.796	0.186	0.408	1.4e-29
TAIR|locus:2152312	880	AT5G38990 [Arabidopsis thalian	0.883	0.206	0.360	3e-29
TAIR|locus:2204564	849	HERK2 "hercules receptor kinas	0.864	0.209	0.404	5.8e-29
TAIR|locus:2177202	873	AT5G39000 [Arabidopsis thalian	0.883	0.208	0.360	1.3e-28
TAIR|locus:2062824	565	NCRK [Arabidopsis thaliana (ta	0.873	0.318	0.376	2.1e-28
TAIR|locus:2178707	824	AT5G24010 [Arabidopsis thalian	0.781	0.195	0.385	4.7e-28

TAIR|locus:2079339 AT3G03770 [Arabidopsis thaliana (taxid:3702)]

 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 153/197 (77%), Positives = 172/197 (87%)

Query:     1 MKLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK 60
             MKLG LGLPAYRTFSLEELE ATNNF++SAFMGEGS+GQ+YRGRLK+G+F+AIRCLKMKK
Sbjct:   452 MKLGGLGLPAYRTFSLEELEYATNNFESSAFMGEGSQGQIYRGRLKDGSFVAIRCLKMKK 511

Query:    61 SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISE 120
             S ST+N MHHIELI+KLRH HLVS LGHCFECY DDS+VSR+F +FEYVPNG LR+WIS+
Sbjct:   512 SCSTQNLMHHIELIAKLRHRHLVSVLGHCFECYLDDSTVSRMFFVFEYVPNGELRTWISD 571

Query:   121 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 180
             GH  + LTW QRIS AIGVA+GIQFLHTGIVPGV+ NNLK+TDILLD NL AK+SSYNLP
Sbjct:   572 GHMGRLLTWEQRISVAIGVAKGIQFLHTGIVPGVYDNNLKMTDILLDNNLAAKLSSYNLP 631

Query:   181 LLAENAEKVGHVTPYSG 197
             LL E   KVG V   SG
Sbjct:   632 LLVEGLGKVGQVGSRSG 648

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2167326 AT5G63410 [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 86/185 (46%), Positives = 128/185 (69%)

Query:     2 KLGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSK-GQMYRGRLKNGTFIAIRCLKMKK 60
             K G+  LP  R FSLEE+ +AT NFD +  +GE S  G +Y+G L+NGT +AIRCL   K
Sbjct:   378 KFGSEDLPVCRQFSLEEIVKATKNFDKTMILGESSLYGTLYKGNLENGTKVAIRCLPSSK 437

Query:    61 SHSTRNFMHHIELISKLRHCHLVSALGHCFECYF-DDSSVSRIFLIFEYVPNGTLRSWIS 119
              +S RN    ++L++KLRH +LV  LGHC +C   DD SV ++FLI+EY+PNG  +S +S
Sbjct:   438 KYSIRNLKLRLDLLAKLRHPNLVCLLGHCIDCGGKDDYSVEKVFLIYEYIPNGNFQSCLS 497

Query:   120 EGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
             +  + + + W++R++   GVA+ + FLHTG++PG FSN LK  ++LL+Q+  AK+S Y L
Sbjct:   498 DNSSGKGMNWSERLNVLTGVAKAVHFLHTGVIPGFFSNRLKTNNVLLNQHRFAKLSDYGL 557

Query:   180 PLLAE 184
              +++E
Sbjct:   558 SIVSE 562

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2050080 AT2G21480 [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 1.9e-30, Sum P(2) = 1.9e-30
 Identities = 72/175 (41%), Positives = 104/175 (59%)

Query:     5 ALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST 64
             ALGL  Y  FSL EL+E T NFD S  +G G  G +Y G + +GT +AI+    +     
Sbjct:   506 ALGLGRY--FSLSELQEVTKNFDASEIIGVGGFGNVYIGTIDDGTQVAIKRGNPQSEQGI 563

Query:    65 RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAW 124
               F   I+++SKLRH HLVS +G+C     D+++   + L++EY+ NG  R  +  G   
Sbjct:   564 TEFHTEIQMLSKLRHRHLVSLIGYC-----DENA--EMILVYEYMSNGPFRDHLY-GKNL 615

Query:   125 QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
               LTW QR+   IG ARG+ +LHTG   G+   ++K T+ILLD+ LVAK++ + L
Sbjct:   616 SPLTWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKSTNILLDEALVAKVADFGL 670

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2151349 THE1 "THESEUS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 73/188 (38%), Positives = 112/188 (59%)

Query:    12 RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHI 71
             R F  +E+ +ATN FD S+ +G G  G++Y+G L++GT +A++    +       F   I
Sbjct:   496 RCFMFQEIMDATNKFDESSLLGVGGFGRVYKGTLEDGTKVAVKRGNPRSEQGMAEFRTEI 555

Query:    72 ELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQ 131
             E++SKLRH HLVS +G+C     D+ S   + L++EY+ NG LRS +  G     L+W Q
Sbjct:   556 EMLSKLRHRHLVSLIGYC-----DERS--EMILVYEYMANGPLRSHLY-GADLPPLSWKQ 607

Query:   132 RISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGH 191
             R+   IG ARG+ +LHTG    +   ++K T+ILLD+NLVAK++ + L     + ++  H
Sbjct:   608 RLEICIGAARGLHYLHTGASQSIIHRDVKTTNILLDENLVAKVADFGLSKTGPSLDQT-H 666

Query:   192 V-TPYSGS 198
             V T   GS
Sbjct:   667 VSTAVKGS 674

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI

GO:0009791 "post-embryonic development" evidence=IGI

GO:0051510 "regulation of unidimensional cell growth" evidence=IGI;RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=IGI

GO:0009826 "unidimensional cell growth" evidence=IGI

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2136338 AT4G39110 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
 Identities = 71/174 (40%), Positives = 104/174 (59%)

Query:     6 LGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTR 65
             LGL  Y  FSL EL+EAT NF+ S  +G G  G +Y G L +GT +A++    +      
Sbjct:   508 LGLGRY--FSLSELQEATKNFEASQIIGVGGFGNVYIGTLDDGTKVAVKRGNPQSEQGIT 565

Query:    66 NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQ 125
              F   I+++SKLRH HLVS +G+C     D++S   + L++E++ NG  R  +  G    
Sbjct:   566 EFQTEIQMLSKLRHRHLVSLIGYC-----DENS--EMILVYEFMSNGPFRDHLY-GKNLA 617

Query:   126 SLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
              LTW QR+   IG ARG+ +LHTG   G+   ++K T+ILLD+ LVAK++ + L
Sbjct:   618 PLTWKQRLEICIGSARGLHYLHTGTAQGIIHRDVKSTNILLDEALVAKVADFGL 671

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2152312 AT5G38990 [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 3.0e-29, P = 3.0e-29
 Identities = 70/194 (36%), Positives = 117/194 (60%)

Query:     5 ALGLPA--YRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNG-TFIAIRCLKMKKS 61
             A  LP+   R FS+ E++ ATN+F+    +G G  G +Y+GR+  G T +A++ L++  +
Sbjct:   502 ASSLPSDLCRRFSIYEIKSATNDFEEKLIIGVGGFGSVYKGRIDGGATLVAVKRLEITSN 561

Query:    62 HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI--S 119
                + F   +E++SKLRH HLVS +G+C     DD +   + L++EY+P+GTL+  +   
Sbjct:   562 QGAKEFDTELEMLSKLRHVHLVSLIGYC-----DDDN--EMVLVYEYMPHGTLKDHLFRR 614

Query:   120 EGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
             +  +   L+W +R+   IG ARG+Q+LHTG    +   ++K T+ILLD+N VAK+S + L
Sbjct:   615 DKASDPPLSWKRRLEICIGAARGLQYLHTGAKYTIIHRDIKTTNILLDENFVAKVSDFGL 674

Query:   180 PLLAENAEKVGHVT 193
               +   +    HV+
Sbjct:   675 SRVGPTSASQTHVS 688

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2204564 HERK2 "hercules receptor kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 5.8e-29, P = 5.8e-29
 Identities = 76/188 (40%), Positives = 108/188 (57%)

Query:    12 RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHI 71
             R F+L E+  AT NFD    +G G  G++YRG L++GT IAI+            F   I
Sbjct:   506 RKFTLAEIRAATKNFDDGLAIGVGGFGKVYRGELEDGTLIAIKRATPHSQQGLAEFETEI 565

Query:    72 ELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQ 131
              ++S+LRH HLVS +G C     D+ +   + L++EY+ NGTLRS +  G     L+W Q
Sbjct:   566 VMLSRLRHRHLVSLIGFC-----DEHN--EMILVYEYMANGTLRSHLF-GSNLPPLSWKQ 617

Query:   132 RISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGH 191
             R+ A IG ARG+ +LHTG   G+   ++K T+ILLD+N VAK+S + L     + +   H
Sbjct:   618 RLEACIGSARGLHYLHTGSERGIIHRDVKTTNILLDENFVAKMSDFGLSKAGPSMDHT-H 676

Query:   192 V-TPYSGS 198
             V T   GS
Sbjct:   677 VSTAVKGS 684

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009741 "response to brassinosteroid stimulus" evidence=IGI

GO:0009826 "unidimensional cell growth" evidence=IGI

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2177202 AT5G39000 [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.3e-28, P = 1.3e-28
 Identities = 70/194 (36%), Positives = 114/194 (58%)

Query:     5 ALGLPA--YRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNG-TFIAIRCLKMKKS 61
             A  LPA   R FS+ E++ ATN+F+    +G G  G +Y+G++  G T +A++ L++  +
Sbjct:   495 AKSLPADLCRRFSIFEIKSATNDFEDKLIIGVGGFGSVYKGQIDGGATLVAVKRLEITSN 554

Query:    62 HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEG 121
                + F   +E++SKLRH HLVS +G+C E   D+  V    L++EY+P+GTL+  +   
Sbjct:   555 QGAKEFETELEMLSKLRHVHLVSLIGYCDE---DNEMV----LVYEYMPHGTLKDHLFRR 607

Query:   122 HAWQS--LTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
                    L+W +R+   IG ARG+Q+LHTG    +   ++K T+ILLD+N V K+S + L
Sbjct:   608 DKTSDPPLSWKRRLEICIGAARGLQYLHTGAKYTIIHRDIKTTNILLDENFVTKVSDFGL 667

Query:   180 PLLAENAEKVGHVT 193
               +   +    HV+
Sbjct:   668 SRVGPTSASQTHVS 681

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2062824 NCRK [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 2.1e-28, P = 2.1e-28
 Identities = 70/186 (37%), Positives = 109/186 (58%)

Query:    14 FSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRN-FMHHIE 72
             FS  ELE+ATN F +++ +G G    +YRG+LK+G   AI+ L   K   T   F   +E
Sbjct:   198 FSYTELEQATNKFSSNSVIGHGGSSCVYRGQLKDGKTAAIKRLNTPKGDDTDTLFSTEVE 257

Query:    73 LISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQR 132
             L+S+L H H+V  +G+C E  F      R+ L+FEY+  G+LR  + +G   + +TW  R
Sbjct:   258 LLSRLHHYHVVPLIGYCSE--FHGKHAERL-LVFEYMSYGSLRDCL-DGELGEKMTWNIR 313

Query:   133 ISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP-LLAENAEKVGH 191
             IS A+G ARG+++LH    P +   ++K T+ILLD+N  AKI+   +   L+ +  + G 
Sbjct:   314 ISVALGAARGLEYLHEAAAPRILHRDVKSTNILLDENWHAKITDLGMAKCLSSDGLQSGS 373

Query:   192 VTPYSG 197
              +P +G
Sbjct:   374 SSPTTG 379

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0010008 "endosome membrane" evidence=IDA

GO:0010089 "xylem development" evidence=RCA;IDA

GO:0012505 "endomembrane system" evidence=IDA

GO:0051020 "GTPase binding" evidence=IPI

GO:0007155 "cell adhesion" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2178707 AT5G24010 [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 4.7e-28, Sum P(2) = 4.7e-28
 Identities = 66/171 (38%), Positives = 97/171 (56%)

Query:    11 YRTF--SLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFM 68
             Y T   S  EL+  TNNFD S  +G G  G ++RG LK+ T +A++            F+
Sbjct:   472 YHTLRISFAELQSGTNNFDRSLVIGVGGFGMVFRGSLKDNTKVAVKRGSPGSRQGLPEFL 531

Query:    69 HHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLT 128
               I ++SK+RH HLVS +G+C E        S + L++EY+  G L+S +  G     L+
Sbjct:   532 SEITILSKIRHRHLVSLVGYCEE-------QSEMILVYEYMDKGPLKSHLY-GSTNPPLS 583

Query:   129 WTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
             W QR+   IG ARG+ +LHTG   G+   ++K T+ILLD N VAK++ + L
Sbjct:   584 WKQRLEVCIGAARGLHYLHTGSSQGIIHRDIKSTNILLDNNYVAKVADFGL 634

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LFN2	Y3037_ARATH	No assigned EC number	0.7766	0.9563	0.2456	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XIX0116 hypothetical protein (774 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	206
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-15
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	2e-15
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	1e-14
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	1e-13
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	4e-13
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	4e-13
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	1e-10
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	5e-10
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	1e-09
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	2e-09
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	2e-09
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	2e-09
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	3e-09
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	5e-09
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	8e-09
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	1e-08
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	3e-08
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	4e-08
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	1e-07
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	2e-07
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	2e-07
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	4e-07
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	4e-07
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	6e-07
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	8e-07
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	1e-06
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	3e-06
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	3e-06
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	4e-06
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	4e-06
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	5e-06
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	5e-06
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	7e-06
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	9e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-06
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	1e-05
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	1e-05
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	1e-05
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	1e-05
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	1e-05
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	1e-05
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	2e-05
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	3e-05
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	3e-05
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	4e-05
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	4e-05
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	5e-05
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	7e-05
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	1e-04
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	1e-04
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	1e-04
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	3e-04
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	3e-04
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	3e-04
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	4e-04
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	4e-04
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	5e-04
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	6e-04
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	7e-04
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	7e-04
cd05087	269	cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of t	0.001
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	0.001
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	0.002
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	0.002
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	0.003
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	0.003
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	0.004
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	0.004

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 71.5 bits (176), Expect = 2e-15
 Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 17/151 (11%)

Query: 33  GEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHH-IELISKLRHCHLVSALGHCF 90
           GEG  G +Y  R K  G  +AI+ +K + S S    +   IE++ KL H ++V      +
Sbjct: 2   GEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIV----KLY 57

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLH-TG 149
             + D++    ++L+ EY   G+L+  + E      L+  + +   + +  G+++LH  G
Sbjct: 58  GVFEDEN---HLYLVMEYCEGGSLKDLLKENE--GKLSEDEILRILLQILEGLEYLHSNG 112

Query: 150 IVPGVFSNNLKITDILLDQ-NLVAKISSYNL 179
           I+      +LK  +ILLD  N   K++ + L
Sbjct: 113 IIHR----DLKPENILLDSDNGKVKLADFGL 139

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 72.2 bits (178), Expect = 2e-15
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 33/160 (20%)

Query: 33  GEGSKGQMYRGRLKNG----TFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALG 87
           GEG+ G++Y+G+LK      T +A++ LK   S   R +F+    ++ KL H ++V  LG
Sbjct: 4   GEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLG 63

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISE------GHAWQSLTWTQRISAAIGVAR 141
            C E          ++L+ EY+  G L  ++ +           +L+    +S AI +A+
Sbjct: 64  VCTE-------EEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAK 116

Query: 142 GIQFLHT-GIVPGVFSNNLKITD-----ILLDQNLVAKIS 175
           G+++L +   V           D      L+ ++LV KIS
Sbjct: 117 GMEYLASKKFVHR---------DLAARNCLVGEDLVVKIS 147

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 69.9 bits (172), Expect = 1e-14
 Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 27/154 (17%)

Query: 33  GEGSKGQMYRGRLKNG-----TFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSAL 86
           GEG+ G++Y+G LK         +A++ LK   S      F+    ++ KL H ++V  L
Sbjct: 8   GEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNIVKLL 67

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFL 146
           G C       +    + ++ EY+P G L  ++ + +  + L+ +  +S A+ +ARG+++L
Sbjct: 68  GVC-------TEEEPLMIVMEYMPGGDLLDYLRK-NRPKELSLSDLLSFALQIARGMEYL 119

Query: 147 HTGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
                    S N     L   + L+ +NLV KIS
Sbjct: 120 E--------SKNFIHRDLAARNCLVGENLVVKIS 145

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 67.2 bits (165), Expect = 1e-13
 Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 28/154 (18%)

Query: 33  GEGSKGQMYRGRLKNGTF-----IAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSAL 86
           GEG+ G++Y+G+LK         +A++ LK   S      F+    ++ KL H ++V  L
Sbjct: 8   GEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVVKLL 67

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFL 146
           G C       +    ++++ EY+  G L S++ +      L+ +  +S A+ +ARG+++L
Sbjct: 68  GVC-------TEEEPLYIVMEYMEGGDLLSYLRKNR--PKLSLSDLLSFALQIARGMEYL 118

Query: 147 HTGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
                    S N     L   + L+ +NLV KIS
Sbjct: 119 E--------SKNFIHRDLAARNCLVGENLVVKIS 144

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 66.0 bits (162), Expect = 4e-13
 Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 28/154 (18%)

Query: 33  GEGSKGQMYRGRLK-----NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSAL 86
           GEG+ G++Y+G LK       T +A++ LK   S   R  F+    ++ KL H ++V  L
Sbjct: 8   GEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIVRLL 67

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFL 146
           G C +    +     ++++ EY+P G L  ++ + H  + LT    +  A+ +A+G+++L
Sbjct: 68  GVCTQ---GEP----LYIVTEYMPGGDLLDFLRK-HG-EKLTLKDLLQMALQIAKGMEYL 118

Query: 147 HTGIVPGVFSNNLKITD-----ILLDQNLVAKIS 175
                    S N    D      L+ +NLV KIS
Sbjct: 119 E--------SKNFVHRDLAARNCLVTENLVVKIS 144

Length = 258

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 65.7 bits (161), Expect = 4e-13
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 26/152 (17%)

Query: 32  MGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHH--IELISKLRHCHLVSALGH 88
           +G GS G +Y+ + K  G  +A++ LK +   S ++      I ++ +L H ++V     
Sbjct: 7   LGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIV----- 61

Query: 89  CFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHT 148
                F+D     ++L+ EY   G L  ++S G     L+  +    A+ + RG+++LH 
Sbjct: 62  RLIDAFEDKD--HLYLVMEYCEGGDLFDYLSRG---GPLSEDEAKKIALQILRGLEYLH- 115

Query: 149 GIVPGVFSNN-----LKITDILLDQNLVAKIS 175
                  SN      LK  +ILLD+N V KI+
Sbjct: 116 -------SNGIIHRDLKPENILLDENGVVKIA 140

Length = 260

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 58.7 bits (143), Expect = 1e-10
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 27/151 (17%)

Query: 33  GEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCF 90
           GEGS G++Y  R K  G  +AI+ +K KK    R   +  I+++ KL+H ++V      +
Sbjct: 8   GEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIV----RLY 63

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHT-G 149
           + + D+     ++L+ EY   G L   + +     S    +     I     +++LH+ G
Sbjct: 64  DVFEDEDK---LYLVMEYCEGGDLFDLLKKRGRL-SEDEARFYLRQI--LSALEYLHSKG 117

Query: 150 IV-----PGVFSNNLKITDILLDQNLVAKIS 175
           IV     P    N      ILLD++   K++
Sbjct: 118 IVHRDLKP---EN------ILLDEDGHVKLA 139

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 57.2 bits (139), Expect = 5e-10
 Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 16/147 (10%)

Query: 33  GEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCHLVSALGHC 89
           G GS G +Y    K  G  +A++ +++              I ++S L+H ++V   G  
Sbjct: 9   GRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSE 68

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHT- 148
            +   ++ +   IFL  EYV  G+L S + +      L           +  G+ +LH+ 
Sbjct: 69  RD---EEKNTLNIFL--EYVSGGSLSSLLKKF---GKLPEPVIRKYTRQILEGLAYLHSN 120

Query: 149 GIVPGVFSNNLKITDILLDQNLVAKIS 175
           GIV      ++K  +IL+D + V K++
Sbjct: 121 GIVHR----DIKGANILVDSDGVVKLA 143

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 56.2 bits (135), Expect = 1e-09
 Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 13/156 (8%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   +     F+   +++ KLRH  LV        
Sbjct: 14  LGQGCFGEVWMGTWNGTTKVAIKTLK-PGTMMPEAFLQEAQIMKKLRHDKLVP------- 65

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
             +   S   I+++ E++  G+L  ++ EG   + L   Q +  A  +A G+ ++     
Sbjct: 66  -LYAVVSEEPIYIVTEFMGKGSLLDFLKEGDG-KYLKLPQLVDMAAQIADGMAYIER--- 120

Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  +IL+  NLV KI+ + L  L E+ E
Sbjct: 121 MNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNE 156

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 55.4 bits (133), Expect = 2e-09
 Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 13/156 (8%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 14  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 65

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
             +   S   I+++ EY+  G+L  ++ +G   + L   Q +  A  +A G+ ++     
Sbjct: 66  -LYAVVSEEPIYIVTEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVER--- 120

Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 121 MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 156

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 21/179 (11%)

Query: 25  NFDTSAFMGEGSKGQMYR-GRLKNGTFIA-----IRCLKMKKSHSTRNFMHHIELISKLR 78
           +F     +G+GS G +Y+  RL +  F A     +  +  K+     N    I +++ + 
Sbjct: 1   DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVN---EIRILASVN 57

Query: 79  HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRI-SAAI 137
           H +++      ++  F D   +++ ++ EY P G L   IS+    + L   Q I    I
Sbjct: 58  HPNII-----SYKEAFLDG--NKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFI 110

Query: 138 GVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP-LLAENAEKVGHVTPY 195
            + RG+Q LH      +   +LK  +ILL  N + KI    +  +L +N  K    TP+
Sbjct: 111 QLLRGLQALHEQ---KILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAKTQIGTPH 166

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 15/150 (10%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G  KN   +AI+ LK       ++F   ++ + +LRH HL+S    C  
Sbjct: 14  LGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVC-- 71

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWI--SEGHAWQSLTWTQRISAAIGVARGIQFLHTG 149
                S    +++I E +  G+L +++   EG   Q L     I  A  VA G+ +L   
Sbjct: 72  -----SVGEPVYIITELMEKGSLLAFLRSPEG---QVLPVASLIDMACQVAEGMAYLEE- 122

Query: 150 IVPGVFSNNLKITDILLDQNLVAKISSYNL 179
                   +L   +IL+ ++LV K++ + L
Sbjct: 123 --QNSIHRDLAARNILVGEDLVCKVADFGL 150

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 55.5 bits (132), Expect = 3e-09
 Identities = 37/182 (20%), Positives = 79/182 (43%), Gaps = 15/182 (8%)

Query: 25  NFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLK---MKKSHSTRNFMHHIELISKLRHCH 81
           ++     +GEGS G++Y  R +    +A++ L      KS     F+  I++++ L H  
Sbjct: 1   SYRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPP 58

Query: 82  LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVAR 141
            +  L   F+          ++L+ EYV  G+L   + +      L+ ++ +     +  
Sbjct: 59  NIVKLYDFFQDE------GSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILS 112

Query: 142 GIQFLHTGIVPGVFSNNLKITDILLDQNL-VAKISSYNLPLLAENAEKVGHVTPYSGSIN 200
            +++LH+    G+   ++K  +ILLD++  V K+  + L  L  +      +     +  
Sbjct: 113 ALEYLHSK---GIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSV 169

Query: 201 PT 202
            T
Sbjct: 170 GT 171

Length = 384

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 54.4 bits (131), Expect = 5e-09
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 25/133 (18%)

Query: 32  MGEGSKGQMYRGRLKNG------TFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVS 84
           +GEG+ G+++ G   +         +A++ LK   S+  R +F    EL++  +H ++V 
Sbjct: 13  LGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVK 72

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTL-----------RSWISEGHAWQSLTWTQRI 133
             G C E            ++FEY+ +G L               S       LT +Q +
Sbjct: 73  FYGVCTEG-------DPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLL 125

Query: 134 SAAIGVARGIQFL 146
             A+ +A G+ +L
Sbjct: 126 QIAVQIASGMVYL 138

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 53.5 bits (128), Expect = 8e-09
 Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 17/158 (10%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G     T +A++ LK   + S  +F+   +++ KLRH  LV       +
Sbjct: 14  LGNGQFGEVWMGTWNGNTKVAVKTLK-PGTMSPESFLEEAQIMKKLRHDKLV-------Q 65

Query: 92  CYFDDSSVSR--IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTG 149
            Y   + VS   I+++ EY+  G+L  ++ +G   ++L     +  A  VA G+ ++   
Sbjct: 66  LY---AVVSEEPIYIVTEYMSKGSLLDFLKDGEG-RALKLPNLVDMAAQVAAGMAYIER- 120

Query: 150 IVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                   +L+  +IL+   LV KI+ + L  L E+ E
Sbjct: 121 --MNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNE 156

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 30/168 (17%)

Query: 32  MGEGSKGQMYRGRL------KNGTFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVS 84
           +GEG+ G++Y+G L       + T +AI+ LK       +  F    EL+S L+H ++V 
Sbjct: 13  LGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVC 72

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI-------------SEGHAWQSLTWTQ 131
            LG C +    +       ++FEY+ +G L  ++              +     SL  + 
Sbjct: 73  LLGVCTK----EQPTC---MLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSD 125

Query: 132 RISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
            +  AI +A G+++L +         +L   + L+ + L  KIS + L
Sbjct: 126 FLHIAIQIAAGMEYLSSH---HFVHRDLAARNCLVGEGLTVKISDFGL 170

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 19/173 (10%)

Query: 32  MGEGSKGQMYRGRL----KNGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSAL 86
           +G G  G++ RGRL    K    +AI+ LK   S   R +F+    ++ +  H +++   
Sbjct: 12  IGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLE 71

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFL 146
           G         +    + +I EY+ NG+L  ++ E       T  Q +    G+A G+++L
Sbjct: 72  GVV-------TKSRPVMIITEYMENGSLDKFLREND--GKFTVGQLVGMLRGIASGMKYL 122

Query: 147 HTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSI 199
                      +L   +IL++ NLV K+S + L    E++E     T   G I
Sbjct: 123 SE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSE--ATYTTKGGKI 170

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 51.6 bits (123), Expect = 4e-08
 Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 26/164 (15%)

Query: 32  MGEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSA 85
           +GEG+ G+++     N         +A++ LK    ++ ++F    EL++ L+H H+V  
Sbjct: 13  LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKF 72

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI----------SEGHAWQSLTWTQRISA 135
            G C E          + ++FEY+ +G L  ++          +EG+    LT +Q +  
Sbjct: 73  YGVCVEG-------DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHI 125

Query: 136 AIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           A  +A G+ +L +         +L   + L+ +NL+ KI  + +
Sbjct: 126 AQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVKIGDFGM 166

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 19/159 (11%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCH 81
                 A +G+G  G +  G  +    +A++CLK     ST  + F+    +++ LRH +
Sbjct: 6   KELKLGATIGKGEFGDVMLGDYRGQK-VAVKCLK---DDSTAAQAFLAEASVMTTLRHPN 61

Query: 82  LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI-SEGHAWQSLTWTQRISAAIGVA 140
           LV  LG         +    ++++ EY+  G+L  ++ S G A   +T  Q++  A+ V 
Sbjct: 62  LVQLLGVVL----QGNP---LYIVTEYMAKGSLVDYLRSRGRA--VITLAQQLGFALDVC 112

Query: 141 RGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
            G+++L           +L   ++L+ ++LVAK+S + L
Sbjct: 113 EGMEYLEE---KNFVHRDLAARNVLVSEDLVAKVSDFGL 148

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 16/167 (9%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G     T +A++ LK   + S   F+   +++ KLRH  LV     C  
Sbjct: 14  LGAGQFGEVWMGTWNGTTKVAVKTLK-PGTMSPEAFLQEAQIMKKLRHDKLVQLYAVC-- 70

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
                S    I+++ EY+  G+L  ++  G   + L   Q +  A  +A G+ +L +   
Sbjct: 71  -----SEEEPIYIVTEYMSKGSLLDFLKSGEG-KKLRLPQLVDMAAQIAEGMAYLES--- 121

Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGS 198
                 +L   +IL+ +NLV KI+ + L  L E+ E     T   G+
Sbjct: 122 RNYIHRDLAARNILVGENLVCKIADFGLARLIEDDE----YTAREGA 164

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 21/160 (13%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G     T +AI+ LK + S S   F+    L+ +L+H  LV        
Sbjct: 14  LGAGQFGEVWMGYYNGHTKVAIKSLK-QGSMSPEAFLAEANLMKQLQHPRLVRLY----- 67

Query: 92  CYFDDSSVSR--IFLIFEYVPNGTLRSWI--SEGHAWQSLTWTQRISAAIGVARGIQFLH 147
                + V++  I++I EY+ NG+L  ++   EG     LT  + I  A  +A G+ F+ 
Sbjct: 68  -----AVVTQEPIYIITEYMENGSLVDFLKTPEGI---KLTINKLIDMAAQIAEGMAFIE 119

Query: 148 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                     +L+  +IL+ + L  KI+ + L  L E+ E
Sbjct: 120 ---RKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNE 156

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 24/150 (16%)

Query: 33  GEGSKGQMYRG-RLKNGTFIAIRCLKM--KKSHSTRNFMHHIELISKLRHCHLVSALGHC 89
           G G+ G +Y+G  L+ G F+AI+ + +   K  + ++ M  I+L+  L+H ++V  +G  
Sbjct: 9   GRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGS- 67

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISE-GHAWQSLTWTQRISAAIGVA---RGIQF 145
                + S    I L  EY  NG+LR  I + G   +SL        A+ V    +G+ +
Sbjct: 68  ----IETSDSLYIIL--EYAENGSLRQIIKKFGPFPESL-------VAVYVYQVLQGLAY 114

Query: 146 LHTGIVPGVFSNNLKITDILLDQNLVAKIS 175
           LH     GV   ++K  +IL  ++ V K++
Sbjct: 115 LHE---QGVIHRDIKAANILTTKDGVVKLA 141

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 16/154 (10%)

Query: 32  MGEGSKGQMYRGR---LKNGTF--IAIRCLK-MKKSHSTRNFMHHIELISKLRHCHLVSA 85
           +GEG  G++   R   L + T   +A++ L    +     +F   IE++  L H ++V  
Sbjct: 12  LGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKY 71

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQF 145
            G C     +      + LI EY+P+G+LR ++       +L   + +  +  + +G+ +
Sbjct: 72  KGVC-----EKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINL--KRLLLFSSQICKGMDY 124

Query: 146 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           L +         +L   +IL++   + KIS + L
Sbjct: 125 LGS---QRYIHRDLAARNILVESEDLVKISDFGL 155

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 48.1 bits (114), Expect = 6e-07
 Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 28/166 (16%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST----RNFMHHIELISKL-RHCHLVSAL 86
           +GEG+ GQ+ R  +K         +KM K  ++    R+F   +E++ KL  H ++++ L
Sbjct: 10  IGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLL 69

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQ-------------SLTWTQRI 133
           G C        +   +++  EY P G L  ++ +    +             +LT  Q +
Sbjct: 70  GAC-------ENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLL 122

Query: 134 SAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
             A  VA G+Q+L           +L   ++L+ +NL +KI+ + L
Sbjct: 123 QFASDVATGMQYLSE---KQFIHRDLAARNVLVGENLASKIADFGL 165

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 48.1 bits (114), Expect = 8e-07
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 28/166 (16%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST----RNFMHHIELISKL-RHCHLVSAL 86
           +GEG+ GQ+ + R+K         +K  K +++    R+F   +E++ KL  H ++++ L
Sbjct: 15  IGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLL 74

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQS-------------LTWTQRI 133
           G C            ++L  EY P+G L  ++ +    ++             L+  Q +
Sbjct: 75  GAC-------EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLL 127

Query: 134 SAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
             A  VARG+ +L           +L   +IL+ +N VAKI+ + L
Sbjct: 128 HFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGL 170

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 28/166 (16%)

Query: 32  MGEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSA 85
           +GEG+ G+++     N         +A++ LK     + ++F    EL++ L+H H+V  
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRF 72

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI------------SEGHAWQSLTWTQRI 133
            G C E          + ++FEY+ +G L  ++             E  A   LT  Q +
Sbjct: 73  YGVCTEG-------RPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQML 125

Query: 134 SAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           + A  +A G+ +L +         +L   + L+ Q LV KI  + +
Sbjct: 126 AIASQIASGMVYLAS---LHFVHRDLATRNCLVGQGLVVKIGDFGM 168

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 20/175 (11%)

Query: 32  MGEGSKGQMYRGRLK----NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSAL 86
           +G G  G++ RGRLK       F+AI+ LK   +    R+F+    ++ +  H +++   
Sbjct: 12  IGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLE 71

Query: 87  GHCFECYFDDSSVSR-IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQF 145
           G          + SR + +I E++ NG L S++ +       T  Q +    G+A G+++
Sbjct: 72  GVV--------TKSRPVMIITEFMENGALDSFLRQNDG--QFTVIQLVGMLRGIAAGMKY 121

Query: 146 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP-LLAENAEKVGHVTPYSGSI 199
           L           +L   +IL++ NLV K+S + L   L ++     + +   G I
Sbjct: 122 LSE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKI 173

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 33/146 (22%), Positives = 74/146 (50%), Gaps = 17/146 (11%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G+G  G++Y+ R  + G  +AI+ +K++        ++ I+++ K +H ++V   G    
Sbjct: 9   GKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYG---- 64

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISA-AIGVARGIQFLHT-G 149
            Y        ++++ E+   G+L+  +      Q+LT +Q I+     + +G+++LH+ G
Sbjct: 65  SYLKK---DELWIVMEFCSGGSLKDLLK--STNQTLTESQ-IAYVCKELLKGLEYLHSNG 118

Query: 150 IVPGVFSNNLKITDILLDQNLVAKIS 175
           I+      ++K  +ILL  +   K+ 
Sbjct: 119 IIHR----DIKAANILLTSDGEVKLI 140

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 45.8 bits (108), Expect = 4e-06
 Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 28/167 (16%)

Query: 31  FMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST----RNFMHHIELISKL-RHCHLVSA 85
            +GEG+ GQ+ + R+K         +K  K +++    R+F   +E++ KL  H ++++ 
Sbjct: 2   VIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINL 61

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQ-------------SLTWTQR 132
           LG C            ++L  EY P+G L  ++ +    +             +L+  Q 
Sbjct: 62  LGAC-------EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 114

Query: 133 ISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           +  A  VARG+ +L           +L   +IL+ +N VAKI+ + L
Sbjct: 115 LHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGL 158

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 19/155 (12%)

Query: 31  FMGEGSKGQMYRG-RLKNGTFIAIRCLKMKKSHST-----RNFMHHIELISKLRHCHLVS 84
            +G GS G +Y G  L +G F A++ + +     T     +     I L+SKL+H ++V 
Sbjct: 7   LLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQ 66

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQ 144
            LG        +     +++  E VP G+L   + +   + S            +  G++
Sbjct: 67  YLG-------TEREEDNLYIFLELVPGGSLAKLLKK---YGSFPEPVIRLYTRQILLGLE 116

Query: 145 FLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           +LH          ++K  +IL+D N V K++ + +
Sbjct: 117 YLHDR---NTVHRDIKGANILVDTNGVVKLADFGM 148

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 45.6 bits (109), Expect = 5e-06
 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 24/150 (16%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNF----MHHIELISKLRHCHLVSALG 87
           GEG+ GQ+Y+ R  K G  +A++  K++  +    F    +  I+L+ KLRH ++V    
Sbjct: 8   GEGTYGQVYKARNKKTGELVALK--KIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKE 65

Query: 88  HCFECYFDDSSVSRIFLIFEYVP---NGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQ 144
                         I+++FEY+     G L             T +Q       +  G+Q
Sbjct: 66  IVTSKGKGS-----IYMVFEYMDHDLTGLLD------SPEVKFTESQIKCYMKQLLEGLQ 114

Query: 145 FLHTGIVPGVFSNNLKITDILLDQNLVAKI 174
           +LH+    G+   ++K ++IL++ + V K+
Sbjct: 115 YLHSN---GILHRDIKGSNILINNDGVLKL 141

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 40/167 (23%), Positives = 79/167 (47%), Gaps = 17/167 (10%)

Query: 32  MGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSAL 86
           +G G  G++  GRLK        +AI+ LK   +   R +F+    ++ +  H +++   
Sbjct: 12  IGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLE 71

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFL 146
           G   +          + ++ EY+ NG+L +++ + H  Q  T  Q +    G+A G+++L
Sbjct: 72  GVVTKS-------KPVMIVTEYMENGSLDAFLRK-HDGQ-FTVIQLVGMLRGIASGMKYL 122

Query: 147 HTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 193
                 G    +L   +IL++ NLV K+S + L  + E+  +  + T
Sbjct: 123 SD---MGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTT 166

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 44.8 bits (106), Expect = 7e-06
 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 10/101 (9%)

Query: 18  ELEEATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISK 76
           E E   +       +G+G+ G +Y  R L     IAI+ +  + S   +     I L S 
Sbjct: 2   EYEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSY 61

Query: 77  LRHCHLVSALGHCFECYFDDSSVSRIFLIF-EYVPNGTLRS 116
           L+H ++V  LG          S +  F IF E VP G+L +
Sbjct: 62  LKHRNIVQYLGSD--------SENGFFKIFMEQVPGGSLSA 94

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 34/163 (20%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHST----RNFMHHIELISKLR 78
           N ++    +GEG+ G + + R K  G  +AI+  K K+S       +  +  ++++ +LR
Sbjct: 1   NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIK--KFKESEDDEDVKKTALREVKVLRQLR 58

Query: 79  HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEG------HAWQSLTWTQR 132
           H ++V+                R++L+FEYV   TL   +          A +S  W Q 
Sbjct: 59  HENIVNLKEAF-------RRKGRLYLVFEYVER-TLLELLEASPGGLPPDAVRSYIW-QL 109

Query: 133 ISAAIGVARGIQFLHT-GIVPGVFSNNLKITDILLDQNLVAKI 174
           + A       I + H+  I+      ++K  +IL+ ++ V K+
Sbjct: 110 LQA-------IAYCHSHNII----HRDIKPENILVSESGVLKL 141

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.2 bits (107), Expect = 9e-06
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 18/135 (13%)

Query: 34  EGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
            G KG  Y+G+ +KNG    ++  ++   +S  +    I  + KL+H ++V  +G C   
Sbjct: 700 RGKKGASYKGKSIKNGMQFVVK--EINDVNSIPS--SEIADMGKLQHPNIVKLIGLC--- 752

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 152
                S    +LI EY+    L   +       +L+W +R   AIG+A+ ++FLH    P
Sbjct: 753 ----RSEKGAYLIHEYIEGKNLSEVLR------NLSWERRRKIAIGIAKALRFLHCRCSP 802

Query: 153 GVFSNNLKITDILLD 167
            V   NL    I++D
Sbjct: 803 AVVVGNLSPEKIIID 817

Length = 968

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 18/154 (11%)

Query: 32  MGEGSKGQ--MYRGRLKN---GTFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSA 85
           +GEG  G+  +Y     N   G  +A++ LK +      + +   I ++  L H ++V  
Sbjct: 12  LGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKY 71

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQF 145
            G C      +     + LI EYVP G+LR ++ +      L   Q +  A  +  G+ +
Sbjct: 72  KGCC-----SEQGGKGLQLIMEYVPLGSLRDYLPK----HKLNLAQLLLFAQQICEGMAY 122

Query: 146 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           LH+         +L   ++LLD + + KI  + L
Sbjct: 123 LHS---QHYIHRDLAARNVLLDNDRLVKIGDFGL 153

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 35/159 (22%), Positives = 75/159 (47%), Gaps = 25/159 (15%)

Query: 31  FMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSALGHC 89
           F+GEG+     +  L     +A++ L+   + + RN F+  I+++S+L++ +++  LG C
Sbjct: 32  FLGEGAPEFDGQPVL-----VAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLGVC 86

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISA---------AIGVA 140
                DD     + +I EY+ NG L  ++S+     + T    I +         A+ +A
Sbjct: 87  VS---DDP----LCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIA 139

Query: 141 RGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
            G+++L +         +L   + L+  +   KI+ + +
Sbjct: 140 SGMKYLAS---LNFVHRDLATRNCLVGNHYTIKIADFGM 175

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 13/148 (8%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G ++ G       +AI+ ++ + + S  +F+   +++ KL H  LV   G C E
Sbjct: 12  IGSGQFGLVWLGYWLEKRKVAIKTIR-EGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTE 70

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
                   S I L+FE++ +G L  ++         +    +   + V  G+ +L +   
Sbjct: 71  -------RSPICLVFEFMEHGCLSDYLRAQRG--KFSQETLLGMCLDVCEGMAYLESS-- 119

Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNL 179
             V   +L   + L+ +N V K+S + +
Sbjct: 120 -NVIHRDLAARNCLVGENQVVKVSDFGM 146

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 22/158 (13%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTR-NFMHHI----ELISKL 77
           ++F     +GEGS   +   + K      AI+ L   K    +   + ++    E++++L
Sbjct: 1   DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILD--KRQLIKEKKVKYVKIEKEVLTRL 58

Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAI 137
                +  L + F+   D+ ++   + + EY PNG L  +I + +       T+  +A I
Sbjct: 59  NGHPGIIKLYYTFQ---DEENL---YFVLEYAPNGELLQYIRK-YGSLDEKCTRFYAAEI 111

Query: 138 GVARGIQFLHT-GIVPGVFSNNLKITDILLDQNLVAKI 174
            +A  +++LH+ GI+      +LK  +ILLD+++  KI
Sbjct: 112 LLA--LEYLHSKGII----HRDLKPENILLDKDMHIKI 143

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 38/165 (23%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLKN-GTFIAI-RCLKMKKSHSTRNF-MHHIELISKLRHC 80
             ++    +GEGS G + + + K  G  +AI + L+ +     +   M  I ++ +LRH 
Sbjct: 1   EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHE 60

Query: 81  HLVSALGHCFECYFDDSSVSRIFLIFEYV-----------PNGTLRSWISEGHAWQSLTW 129
           +LV+ +              R++L+FE+V           PNG L       + +Q    
Sbjct: 61  NLVNLIEVF-------RRKKRLYLVFEFVDHTVLDDLEKYPNG-LDESRVRKYLFQ---- 108

Query: 130 TQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI 174
                    + RGI+F H+     +   ++K  +IL+ Q+ V K+
Sbjct: 109 ---------ILRGIEFCHSH---NIIHRDIKPENILVSQSGVVKL 141

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 34/156 (21%), Positives = 73/156 (46%), Gaps = 12/156 (7%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G   N T +A++ LK   + S + F+    L+  L+H  LV        
Sbjct: 14  LGAGQFGEVWMGYYNNSTKVAVKTLK-PGTMSVQAFLEEANLMKTLQHDKLV-------R 65

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
            Y   +    I++I EY+  G+L  ++ +      +   + I  +  +A G+ ++     
Sbjct: 66  LYAVVTKEEPIYIITEYMAKGSLLDFL-KSDEGGKVLLPKLIDFSAQIAEGMAYIER--- 121

Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  ++L+ ++L+ KI+ + L  + E+ E
Sbjct: 122 KNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNE 157

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 33/150 (22%), Positives = 70/150 (46%), Gaps = 13/150 (8%)

Query: 31  FMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHC 89
            +G+G+ G++++G LK+ T +A++  K       +  F+    ++ +  H ++V  +G C
Sbjct: 2   LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVC 61

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTG 149
                  +    I+++ E VP G   S++ +      L   Q +  A+  A G+ +L + 
Sbjct: 62  -------TQRQPIYIVMELVPGGDFLSFLRKKK--DELKTKQLVKFALDAAAGMAYLES- 111

Query: 150 IVPGVFSNNLKITDILLDQNLVAKISSYNL 179
                   +L   + L+ +N V KIS + +
Sbjct: 112 --KNCIHRDLAARNCLVGENNVLKISDFGM 139

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 33/148 (22%), Positives = 69/148 (46%), Gaps = 13/148 (8%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G ++ G+ +    +AI+ ++ + + S  +F+   +++ KL H +LV   G C  
Sbjct: 12  LGSGQFGVVHLGKWRGKIDVAIKMIR-EGAMSEDDFIEEAKVMMKLSHPNLVQLYGVC-- 68

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
                +    IF++ EY+ NG L +++ E        W   +     V   +++L +   
Sbjct: 69  -----TKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWL--LDMCSDVCEAMEYLESN-- 119

Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNL 179
            G    +L   + L+ ++ V K+S + L
Sbjct: 120 -GFIHRDLAARNCLVGEDNVVKVSDFGL 146

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 21/152 (13%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G +  G+ +    +AI+ +K + S S   F+   +++ KL H  LV   G C  
Sbjct: 12  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMKLSHEKLVQLYGVC-- 68

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEG----HAWQSLTWTQRISAAIGVARGIQFLH 147
                +    I+++ EY+ NG L +++ E        Q L   + +   +      QF+H
Sbjct: 69  -----TKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQFIH 123

Query: 148 TGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
                     +L   + L+D     K+S + L
Sbjct: 124 ---------RDLAARNCLVDDQGCVKVSDFGL 146

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 19/128 (14%)

Query: 31  FMGEGSKGQMYRGRLKN----GT---FIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHL 82
           F+G G+ G++Y G   +    G+    +A++ L+   +   +  F+    L+S   H ++
Sbjct: 2   FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNI 61

Query: 83  VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQS----LTWTQRISAAIG 138
           V  LG C     ++      ++I E +  G L S++ +    +     LT  + +   + 
Sbjct: 62  VKLLGVCLL---NEP----QYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLD 114

Query: 139 VARGIQFL 146
           VA+G  +L
Sbjct: 115 VAKGCVYL 122

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 34/171 (19%)

Query: 32  MGEGSKGQMYRG-RLKNGTFIAIRCLKMKKSHSTRN----------FMHHIELISKLRHC 80
           +G+G+ G++Y    +  G  +A++ +++  + + R+              IE +  L H 
Sbjct: 9   IGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHL 68

Query: 81  HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS-----EGHAWQSLTWTQRISA 135
           ++V  LG  FE   +  S   IFL  EYVP G++ S +      E    +  T  Q    
Sbjct: 69  NIVQYLG--FETTEEYLS---IFL--EYVPGGSIGSCLRTYGRFEEQLVRFFT-EQ---- 116

Query: 136 AIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENA 186
              V  G+ +LH+    G+   +LK  ++L+D + + KIS + +   +++ 
Sbjct: 117 ---VLEGLAYLHS---KGILHRDLKADNLLVDADGICKISDFGISKKSDDI 161

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 34/149 (22%), Positives = 73/149 (48%), Gaps = 13/149 (8%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHCF 90
           +G+G+ G +Y+G LK  T +A++  +        R F+   E++ +  H ++V  +G C 
Sbjct: 3   IGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCV 62

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGI 150
           +          I+++ E VP G+L +++ +      LT  + +  ++  A G+++L +  
Sbjct: 63  QKQ-------PIYIVMELVPGGSLLTFLRKKKN--RLTVKKLLQMSLDAAAGMEYLES-- 111

Query: 151 VPGVFSNNLKITDILLDQNLVAKISSYNL 179
                  +L   + L+ +N V KIS + +
Sbjct: 112 -KNCIHRDLAARNCLVGENNVLKISDFGM 139

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 42.3 bits (99), Expect = 7e-05
 Identities = 36/167 (21%), Positives = 74/167 (44%), Gaps = 29/167 (17%)

Query: 32  MGEGSKGQMYRGR------LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSA 85
           +GEG+ G+++          K+   +A++ LK     + ++F    EL++ L+H H+V  
Sbjct: 13  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 72

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS----------EGHAWQS---LTWTQR 132
            G C +          + ++FEY+ +G L  ++           +G   Q+   L  +Q 
Sbjct: 73  YGVCGDG-------DPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQM 125

Query: 133 ISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           +  A  +A G+ +L +         +L   + L+  NL+ KI  + +
Sbjct: 126 LHIASQIASGMVYLAS---QHFVHRDLATRNCLVGANLLVKIGDFGM 169

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 38/176 (21%)

Query: 32  MGEGSKGQMYRG---RLKNG---TFIAIRCLKMKKSHST-RNFMHHIELISKLRHCHLVS 84
           +GEG  G++ +    RLK     T +A++ LK   S S  R+ +    L+ ++ H H++ 
Sbjct: 8   LGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIK 67

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISE----GHAW---------------- 124
             G C       S    + LI EY   G+LRS++ E    G ++                
Sbjct: 68  LYGAC-------SQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPD 120

Query: 125 -QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
            ++LT    IS A  ++RG+Q+L       +   +L   ++L+ +    KIS + L
Sbjct: 121 ERALTMGDLISFAWQISRGMQYLAE---MKLVHRDLAARNVLVAEGRKMKISDFGL 173

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 36/150 (24%), Positives = 73/150 (48%), Gaps = 16/150 (10%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G   N T +A++ LK   +   ++F+   +++ KLRH  L+     C  
Sbjct: 14  LGAGQFGEVWEGLWNNTTPVAVKTLK-PGTMDPKDFLAEAQIMKKLRHPKLIQLYAVC-- 70

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFL--HTG 149
                +    I+++ E +  G+L  ++ +G A ++L   Q I  A  VA G+ +L     
Sbjct: 71  -----TLEEPIYIVTELMKYGSLLEYL-QGGAGRALKLPQLIDMAAQVASGMAYLEAQNY 124

Query: 150 IVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           I       +L   ++L+ +N + K++ + L
Sbjct: 125 I-----HRDLAARNVLVGENNICKVADFGL 149

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 37/160 (23%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCL------KMKKSHSTRNFMHHIELISK 76
           ++F+    +G GS G++   R K +G + A++ L      K+K+     N      ++  
Sbjct: 1   DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLN---EKRILQS 57

Query: 77  LRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI------SEGHAWQSLTWT 130
           +RH  LV+  G     + DDS+   ++L+ EYVP G L S +       E  A       
Sbjct: 58  IRHPFLVNLYGS----FQDDSN---LYLVMEYVPGGELFSHLRKSGRFPEPVA------- 103

Query: 131 QRISAAIGVARGIQFLHT-GIVPGVFSNNLKITDILLDQN 169
            R  AA  V   +++LH+  IV      +LK  ++LLD +
Sbjct: 104 -RFYAA-QVVLALEYLHSLDIV----YRDLKPENLLLDSD 137

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 39/170 (22%), Positives = 80/170 (47%), Gaps = 20/170 (11%)

Query: 32  MGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCF 90
           +G+G+ G++Y+ + K  G   A + ++ K      ++M  IE+++   H ++V  LG   
Sbjct: 20  LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLG--- 76

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGI 150
             Y+D     +++++ E+ P G + + + E    + LT  Q       +   +Q+LH+  
Sbjct: 77  AFYWD----GKLWIMIEFCPGGAVDAIMLELD--RGLTEPQIQVICRQMLEALQYLHS-- 128

Query: 151 VPGVFSNNLKITDILLDQNLVAK-----ISSYNLPLLAENAEKVGHVTPY 195
              +   +LK  ++LL  +   K     +S+ N+  L      +G  TPY
Sbjct: 129 -MKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIG--TPY 175

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 25/152 (16%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH------STRNFMHHIELISKLRHCHLVSA 85
           +G+G+ G +Y G    G  IA++ +++  S+              ++L+  L+H ++V  
Sbjct: 8   LGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQY 67

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLT---WTQRISAAIGVARG 142
           LG C     DD+++S IF+  E+VP G++ S ++            +T++I        G
Sbjct: 68  LGTC----LDDNTIS-IFM--EFVPGGSISSILNRFGPLPEPVFCKYTKQI------LDG 114

Query: 143 IQFLHTGIVPGVFSNNLKITDILLDQNLVAKI 174
           + +LH      V   ++K  +++L  N + K+
Sbjct: 115 VAYLHNN---CVVHRDIKGNNVMLMPNGIIKL 143

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 26/134 (19%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH--STRNFMHHIEL-ISKLRH 79
           ++ +    +G+GS G +Y+ R K  G   A     +KK H      F   +   +  LR 
Sbjct: 1   SDLERVKVLGQGSSGVVYKVRHKPTGKIYA-----LKKIHVDGDEEFRKQLLRELKTLRS 55

Query: 80  C---HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAA 136
           C   ++V     C+  ++ +  +S   ++ EY+  G+L   + +          + + A 
Sbjct: 56  CESPYVVK----CYGAFYKEGEIS---IVLEYMDGGSLADLLKK-----VGKIPEPVLAY 103

Query: 137 IG--VARGIQFLHT 148
           I   + +G+ +LHT
Sbjct: 104 IARQILKGLDYLHT 117

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 17/167 (10%)

Query: 32  MGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSAL 86
           +G G  G+++RG LK        +AI+ LK   +   R  F+    ++ +  H +++   
Sbjct: 13  IGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLE 72

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFL 146
           G         +      +I EY+ NG L  ++ +       +  Q +    G+A G+++L
Sbjct: 73  GVV-------TKFKPAMIITEYMENGALDKYLRDHDG--EFSSYQLVGMLRGIAAGMKYL 123

Query: 147 HTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 193
                      +L   +IL++ NL  K+S + L  + E+  +  + T
Sbjct: 124 SD---MNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTT 167

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 36/162 (22%)

Query: 32  MGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH-------LV 83
           +G GS  ++   RLK N    A++ +K +  H   +    I+ +   +H          +
Sbjct: 3   IGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDED----IDWVQTEKHVFEQASSNPFL 58

Query: 84  SALGHCFECYFDDSSVSRIFLIFEYVPNGTL------RSWISEGHAWQSLTWTQRISAAI 137
             L  CF+      + SR+FL+ EYV  G L      +  + E HA       +  +A I
Sbjct: 59  VGLHSCFQ------TTSRLFLVIEYVNGGDLMFHMQRQRKLPEEHA-------RFYAAEI 105

Query: 138 GVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
            +A  + FLH     G+   +LK+ ++LLD +   K++ Y +
Sbjct: 106 CIA--LNFLHE---RGIIYRDLKLDNVLLDADGHIKLTDYGM 142

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 16/159 (10%)

Query: 25  NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLK---MKKSHSTRNFMHHIELISKLRHC 80
           +F+    +G+GS G++     K      AI+ LK   + +       M    +++     
Sbjct: 1   DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKP 60

Query: 81  HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVA 140
             ++ L  CF+      +V R++ + EYV  G L   I +   ++     Q +  A  ++
Sbjct: 61  PFLTQLHSCFQ------TVDRLYFVMEYVNGGDLMYHIQQVGKFKE---PQAVFYAAEIS 111

Query: 141 RGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
            G+ FLH     G+   +LK+ +++LD     KI+ + +
Sbjct: 112 VGLFFLHR---RGIIYRDLKLDNVMLDSEGHIKIADFGM 147

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 35/151 (23%), Positives = 75/151 (49%), Gaps = 17/151 (11%)

Query: 30  AFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHC 89
             +GEG  G + +G    G  +A++ +K   +   + F+    +++KL H +LV  LG  
Sbjct: 12  EIIGEGEFGAVLQGEYT-GQKVAVKNIKCDVT--AQAFLEETAVMTKLHHKNLVRLLGVI 68

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWI-SEGHAWQSLTWTQRISAAIGVARGIQFLHT 148
                     + ++++ E +  G L +++ + G A  S+   Q +  ++ VA G+++L +
Sbjct: 69  LH--------NGLYIVMELMSKGNLVNFLRTRGRALVSVI--QLLQFSLDVAEGMEYLES 118

Query: 149 GIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
                +   +L   +IL+ ++ VAK+S + L
Sbjct: 119 ---KKLVHRDLAARNILVSEDGVAKVSDFGL 146

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 38/161 (23%), Positives = 61/161 (37%), Gaps = 21/161 (13%)

Query: 26  FDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMK------KSHSTRNFMHHIELISKLR 78
           F   A +G G  G++     K  G   AI+ LK        +  S        E  +  R
Sbjct: 1   FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSER 60

Query: 79  HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIG 138
           H  LV+    CF+      +   +  + EY   G L   I         +  + +  A  
Sbjct: 61  HPFLVNLFA-CFQ------TEDHVCFVMEYAAGGDLMMHIHTD----VFSEPRAVFYAAC 109

Query: 139 VARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           V  G+Q+LH      +   +LK+ ++LLD     KI+ + L
Sbjct: 110 VVLGLQYLHEN---KIVYRDLKLDNLLLDTEGFVKIADFGL 147

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 39.2 bits (91), Expect = 7e-04
 Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 32/160 (20%)

Query: 32  MGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSA----- 85
           +G+GS G+++   LK    F AI+ LK             + L+     C +V       
Sbjct: 3   LGKGSFGKVFLAELKGTNQFFAIKALK-----------KDVVLMDDDVECTMVEKRVLSL 51

Query: 86  ------LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGV 139
                 L H + C F   +   +F + EY+  G L   I   H +  L      +A I  
Sbjct: 52  AWEHPFLTHLY-CTF--QTKENLFFVMEYLNGGDLMFHIQSCHKF-DLPRATFYAAEIIC 107

Query: 140 ARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
             G+QFLH+    G+   +LK+ +ILLD +   KI+ + +
Sbjct: 108 --GLQFLHS---KGIVYRDLKLDNILLDTDGHIKIADFGM 142

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 16/154 (10%)

Query: 32  MGEGSKGQMYRGRLKNG---TFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALG 87
           +G G  G++  G + +G     + ++ L++  S      F+   +    L+H +L+  LG
Sbjct: 3   IGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLG 62

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRI--SAAIGVARGIQF 145
            C E       V+   L+ E+ P G L+ ++      + +T         A  +A G+  
Sbjct: 63  QCTE-------VTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLH 115

Query: 146 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           LH         ++L + + LL  +L  KI  Y L
Sbjct: 116 LHKN---NFIHSDLALRNCLLTADLTVKIGDYGL 146

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells. Aatyk1 has been implicated in neural differentiation, and is a regulator of the Na-K-2Cl cotransporter, a membrane protein involved in cell proliferation and survival, epithelial transport, and blood pressure control. The function of Aatyk3 is still unknown. Length = 269

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 31/152 (20%), Positives = 69/152 (45%), Gaps = 25/152 (16%)

Query: 25  NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMH-HIE--LISKLRHC 80
           + +    +G G+ G+++  R + +  + A++ + + +    +   H H E  ++ ++ H 
Sbjct: 2   DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHP 61

Query: 81  HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLT---WTQRISAAI 137
            ++      F    D      ++++ EYVP G L S++     + + T   +   I  A 
Sbjct: 62  FIIRL----FWTEHDQRF---LYMLMEYVPGGELFSYLRNSGRFSNSTGLFYASEIVCA- 113

Query: 138 GVARGIQFLHT-GIVPGVFSNNLKITDILLDQ 168
                +++LH+  IV      +LK  +ILLD+
Sbjct: 114 -----LEYLHSKEIV----YRDLKPENILLDK 136

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 32/157 (20%), Positives = 68/157 (43%), Gaps = 44/157 (28%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMK-KSHSTRNFMHHIELISKLR-HCHLVSALGHC 89
           GEG+  ++ + +  K G + AI+C+K   KS    N +  I+ + +L  H +++  +   
Sbjct: 8   GEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLI--- 64

Query: 90  FECYFDDSSVSRIFLIFE---------------YVPNGTLRSWISEGHAWQSLTWTQRIS 134
            E  FD  +  R+ L+FE                +P   ++S++     +Q L       
Sbjct: 65  -EVLFDRKT-GRLALVFELMDMNLYELIKGRKRPLPEKRVKSYM-----YQLL------- 110

Query: 135 AAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV 171
                 + +  +H     G+F  ++K  +IL+  +++
Sbjct: 111 ------KSLDHMHRN---GIFHRDIKPENILIKDDIL 138

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 30/166 (18%)

Query: 25  NFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSH------STRNFMHHIELISKL 77
            F+    +GEG+ G +YR R   +G  +A++ ++M          S R     I L+  L
Sbjct: 8   EFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLR----EITLLLNL 63

Query: 78  RHCHLVS----ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRI 133
           RH ++V      +G           +  IFL+ EY     L S +         + +Q  
Sbjct: 64  RHPNIVELKEVVVG---------KHLDSIFLVMEYCEQ-DLASLLDNMPT--PFSESQVK 111

Query: 134 SAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
              + + RG+Q+LH      +   +LK++++LL      KI+ + L
Sbjct: 112 CLMLQLLRGLQYLHENF---IIHRDLKVSNLLLTDKGCLKIADFGL 154

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 18/153 (11%)

Query: 32  MGEGSKGQMYRGRLKNGT--FIAIRCLK---MKKSHSTRNFMHHIELISKLRHCHLVSAL 86
           +G+GS G++    LK GT    AI+ LK   + +       M    +++       ++AL
Sbjct: 3   LGKGSFGKVMLAELK-GTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTAL 61

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFL 146
             CF+      +  R+F + EYV  G L   I     +       R  AA  V   + FL
Sbjct: 62  HCCFQ------TKDRLFFVMEYVNGGDLMFQIQRSRKFDEPR--SRFYAA-EVTLALMFL 112

Query: 147 HTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           H     GV   +LK+ +ILLD     K++ + +
Sbjct: 113 HRH---GVIYRDLKLDNILLDAEGHCKLADFGM 142

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 17/128 (13%)

Query: 32  MGEGSKGQMYRG--RLKNGTFI--AIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSAL 86
           +GEG  G +Y+G         I  A++  K   S S R  F+    ++ +  H H+V  +
Sbjct: 14  IGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLI 73

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSL----TWTQRISAAIGVARG 142
           G          + + ++++ E  P G LRS++        L     ++ ++S A+     
Sbjct: 74  GVI--------TENPVWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLES 125

Query: 143 IQFLHTGI 150
            +F+H  I
Sbjct: 126 KRFVHRDI 133

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 24/100 (24%)

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTL------RSWISEGHAWQSLTWTQRISAAIGV 139
           L  CF+      + SR+F + E+V  G L      +  + E HA       +  SA I +
Sbjct: 61  LHSCFQ------TESRLFFVIEFVSGGDLMFHMQRQRKLPEEHA-------RFYSAEISL 107

Query: 140 ARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           A  + FLH     G+   +LK+ ++LLD     K++ Y +
Sbjct: 108 A--LNFLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGM 142

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 29/147 (19%), Positives = 71/147 (48%), Gaps = 27/147 (18%)

Query: 50  FIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEY 108
            +A++ L+   + + RN F+  ++++S+L+  +++  LG C +   +D     + +I EY
Sbjct: 48  LVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRLLGVCVD---EDP----LCMITEY 100

Query: 109 VPNGTLRSWIS----------------EGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 152
           + NG L  ++S                  H   +++++  +  A+ +A G+++L +    
Sbjct: 101 MENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSS---L 157

Query: 153 GVFSNNLKITDILLDQNLVAKISSYNL 179
                +L   + L+ +NL  KI+ + +
Sbjct: 158 NFVHRDLATRNCLVGENLTIKIADFGM 184

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.98
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.98
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.97
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.97
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.97
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.97
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.97
KOG0589	426	consensus Serine/threonine protein kinase [General	99.97
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.97
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.97
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.97
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.97
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.97
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.97
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.97
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.97
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.97
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.97
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.97
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.97
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.97
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.97
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.97
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.97
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.97
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.97
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.97
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.97
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.97
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.97
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.97
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.97
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.97
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.97
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.97
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.97
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.97
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.97
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.97
KOG0584	632	consensus Serine/threonine protein kinase [General	99.97
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.97
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.97
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.97
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.97
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.97
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.97
PTZ00267	478	NIMA-related protein kinase; Provisional	99.97
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.97
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.97
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.97
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.97
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.97
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.97
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.97
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.97
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.97
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.97
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.97
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.97
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.97
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.97
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.97
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.97
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.97
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.96
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.96
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.96
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.96
PHA03212	391	serine/threonine kinase US3; Provisional	99.96
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.96
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.96
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.96
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.96
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.96
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.96
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.96
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.96
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.96
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.96
PTZ00036	440	glycogen synthase kinase; Provisional	99.96
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.96
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.96
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.96
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.96
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.96
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.96
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.96
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.96
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.96
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.96
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.96
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.96
PHA02988	283	hypothetical protein; Provisional	99.96
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.96
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.96
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.96
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.96
PHA03209	357	serine/threonine kinase US3; Provisional	99.96
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.96
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.96
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.96
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.96
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.96
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.96
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.96
KOG0586	596	consensus Serine/threonine protein kinase [General	99.96
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.96
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.96
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.96
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.96
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.96
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.96
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.96
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.96
PTZ00283	496	serine/threonine protein kinase; Provisional	99.96
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.96
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.96
KOG0610	459	consensus Putative serine/threonine protein kinase	99.96
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.96
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.96
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.96
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.96
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.96
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.96
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.96
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.96
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.96
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.96
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.96
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.96
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.96
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.96
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.96
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.96
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.96
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.96
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.96
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.96
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.96
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.96
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.96
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.96
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.96
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.96
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.96
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.96
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.96
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.96
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.96
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.96
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.96
PHA03211	461	serine/threonine kinase US3; Provisional	99.96
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.96
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.95
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.95
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.95
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.95
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.95
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.95
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.95
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.95
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.95
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.95
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.95
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.95
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.95
KOG3653	534	consensus Transforming growth factor beta/activin	99.95
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.95
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.95
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.95
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.95
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.95
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.95
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.95
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.95
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.95
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.95
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.95
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.95
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.95
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.95
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.95
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.95
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.95
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.95
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.95
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.95
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.95
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.95
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.95
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.95
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.95
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.95
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.95
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.95
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.95
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.95
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.95
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.95
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.95
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.95
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.95
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.95
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.95
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.95
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.95
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.95
PHA03207	392	serine/threonine kinase US3; Provisional	99.95
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.95
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.95
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.95
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.95
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.95
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.95
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.95
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.95
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.95
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.95
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.95
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.95
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.95
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.95
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.95
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.95
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.95
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.95
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.95
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.95
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.95
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.95
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.95
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.95
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.95
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.95
PTZ00284	467	protein kinase; Provisional	99.95
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.95
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.95
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.95
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.95
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.95
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.95
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.95
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.95
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.95
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.95
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.95
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.95
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.95
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.95
PRK09188	365	serine/threonine protein kinase; Provisional	99.95
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.95
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.95
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.95
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.95
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.95
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.95
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.95
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.95
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.95
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.95
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.95
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.95
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.95
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.95
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.95
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.95
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.95
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.94
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.94
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.94
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.94
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.94
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.94
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.94
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.94
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.94
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.94
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.94
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.94
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.94
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.94
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.94
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.94
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.94
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.94
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.94
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.94
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.94
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.94
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.94
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.94
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.94
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.94
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.94
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.94
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.94
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.94
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.94
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.94
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.94
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.94
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.94
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.94
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.94
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.94
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.94
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.94
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.94
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.94
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.94
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.94
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.94
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.94
PLN00009	294	cyclin-dependent kinase A; Provisional	99.94
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.94
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.94
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.94
PHA03210	501	serine/threonine kinase US3; Provisional	99.94
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.94
KOG1152	772	consensus Signal transduction serine/threonine kin	99.94
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.94
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.94
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.94
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.94
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.94
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.94
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.94
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.93
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.93
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.93
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.93
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.93
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.93
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.93
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.93
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.93
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.93
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.93
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.93
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.93
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.93
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.93
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.93
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.93
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.93
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.93
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.93
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.93
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.93
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.93
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.92
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.92
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.92
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.92
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.92
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
PHA02882	294	putative serine/threonine kinase; Provisional	99.92
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.91
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.91
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.91
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.91
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.91
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.91
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.91
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.9
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.9
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.9
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.9
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.9
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.89
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.89
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.87
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.87
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.86
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.86
PRK10345	210	hypothetical protein; Provisional	99.86
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.86
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.86
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.85
smart00090	237	RIO RIO-like kinase.	99.85
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.84
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.84
PRK14879	211	serine/threonine protein kinase; Provisional	99.83
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.83
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.83
PRK12274	218	serine/threonine protein kinase; Provisional	99.83
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.82
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.82
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.81
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.81
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.78
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.75
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.75
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.74
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.71
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.7
PLN00181	793	protein SPA1-RELATED; Provisional	99.69
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.63
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.61
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.6
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.53
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.52
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.5
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.49
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.45
KOG3087	229	consensus Serine/threonine protein kinase [General	99.43
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.4
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.39
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.35
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	99.31
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.3
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	99.26
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.26
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.25
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	99.25
KOG1243	690	consensus Protein kinase [General function predict	99.22
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.21
COG0478	304	RIO-like serine/threonine protein kinase fused to	99.19
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.14
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.13
PRK09902	216	hypothetical protein; Provisional	99.03
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	99.03
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.97
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.96
KOG1266	458	consensus Protein kinase [Signal transduction mech	98.94
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.88
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.82
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	98.81
KOG1235	538	consensus Predicted unusual protein kinase [Genera	98.78
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.62
PF01636	239	APH: Phosphotransferase enzyme family This family	98.56
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	98.53
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	98.52
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	98.43
PLN02876	822	acyl-CoA dehydrogenase	98.25
COG4248	637	Uncharacterized protein with protein kinase and he	98.25
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	98.18
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	98.14
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	98.09
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	98.06
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	98.06
PRK05231	319	homoserine kinase; Provisional	97.97
KOG2270	520	consensus Serine/threonine protein kinase involved	97.97
KOG2268	465	consensus Serine/threonine protein kinase [Signal	97.94
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	97.87
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	97.82
PRK10593	297	hypothetical protein; Provisional	97.82
PRK09550	401	mtnK methylthioribose kinase; Reviewed	97.77
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	97.71
PLN02236	344	choline kinase	97.59
KOG2137	700	consensus Protein kinase [Signal transduction mech	97.49
KOG0606	1205	consensus Microtubule-associated serine/threonine	97.42
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	97.33
KOG0576	829	consensus Mitogen-activated protein kinase kinase	97.31
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	97.28
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	97.19
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	97.16
PRK11768	325	serine/threonine protein kinase; Provisional	97.08
PLN02756	418	S-methyl-5-thioribose kinase	96.93
COG2334	331	Putative homoserine kinase type II (protein kinase	96.71
PRK12396	409	5-methylribose kinase; Reviewed	96.69
PTZ00384	383	choline kinase; Provisional	96.62
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	96.6
PRK06148	1013	hypothetical protein; Provisional	96.3
PTZ00296	442	choline kinase; Provisional	96.3
PHA03111	444	Ser/Thr kinase; Provisional	95.95
PRK10271	188	thiK thiamine kinase; Provisional	95.88
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	95.73
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	95.68
PF05445	434	Pox_ser-thr_kin: Poxvirus serine/threonine protein	95.53
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	95.21
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	95.05
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	94.81
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	94.01

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-41  Score=267.33  Aligned_cols=188  Identities=36%  Similarity=0.695  Sum_probs=165.6

Q ss_pred             ccceeCHHHHHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeecccc
Q 028629           10 AYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHC   89 (206)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~   89 (206)
                      ..+.|++.++..++++|.....||+|+||.||+|...++..||||++........++|.+|++++.+++|+|+++++|+|
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC  140 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYC  140 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEE
Confidence            57889999999999999999999999999999999988899999988755432156699999999999999999999999


Q ss_pred             ccccccCCCCc-eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC
Q 028629           90 FECYFDDSSVS-RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ  168 (206)
Q Consensus        90 ~~~~~~~~~~~-~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~  168 (206)
                      .+       .+ ..+||+||+++|+|.+++...... +++|..+..||.++|+||.|||+....+|+||||||+|||+|+
T Consensus       141 ~e-------~~~~~~LVYEym~nGsL~d~L~~~~~~-~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~  212 (361)
T KOG1187|consen  141 LE-------GGEHRLLVYEYMPNGSLEDHLHGKKGE-PLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDE  212 (361)
T ss_pred             ec-------CCceEEEEEEccCCCCHHHHhCCCCCC-CCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECC
Confidence            86       44 599999999999999999876532 7899999999999999999999976568999999999999999


Q ss_pred             CCceeEccCCccccccc-ccccccc-ccCccccCCCCCC
Q 028629          169 NLVAKISSYNLPLLAEN-AEKVGHV-TPYSGSINPTNSA  205 (206)
Q Consensus       169 ~~~~kl~df~~a~~~~~-~~~~~~~-~~~~~y~aPE~~~  205 (206)
                      ++++||+|||+|+.... ....... .||.||+||||..
T Consensus       213 ~~~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~  251 (361)
T KOG1187|consen  213 DFNAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYAS  251 (361)
T ss_pred             CCCEEccCccCcccCCccccceeeecCCCCccCChhhhc
Confidence            99999999999976654 3333333 8999999999874

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-40  Score=254.82  Aligned_cols=170  Identities=24%  Similarity=0.403  Sum_probs=154.7

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC--CCccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK--KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ...+|...+.||.|.|+.||+|+++ ++..||||.+.+.  .....+.+..|+.+|+.++|+||+.+++++..       
T Consensus         8 ~~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~-------   80 (429)
T KOG0595|consen    8 VVGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIED-------   80 (429)
T ss_pred             ccccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEec-------
Confidence            3568999999999999999999987 7899999999876  35556678899999999999999999999876       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC------Cce
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN------LVA  172 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~------~~~  172 (206)
                      .+++|+|||||+||+|.+++...   ..+++.+...++.|++.||.+||+   .+|+||||||.|||++..      ..+
T Consensus        81 ~~~i~lVMEyC~gGDLs~yi~~~---~~l~e~t~r~Fm~QLA~alq~L~~---~~IiHRDLKPQNiLLs~~~~~~~~~~L  154 (429)
T KOG0595|consen   81 DDFIYLVMEYCNGGDLSDYIRRR---GRLPEATARHFMQQLASALQFLHE---NNIIHRDLKPQNILLSTTARNDTSPVL  154 (429)
T ss_pred             CCeEEEEEEeCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCcceEEeccCCCCCCCceE
Confidence            67999999999999999999987   359999999999999999999999   799999999999999865      468


Q ss_pred             eEccCCccccccccccccccccCccccCCCCC
Q 028629          173 KISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       173 kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ||+|||+|+...+..-....+|++-|||||-.
T Consensus       155 KIADFGfAR~L~~~~~a~tlcGSplYMAPEV~  186 (429)
T KOG0595|consen  155 KIADFGFARFLQPGSMAETLCGSPLYMAPEVI  186 (429)
T ss_pred             EecccchhhhCCchhHHHHhhCCccccCHHHH
Confidence            99999999999999888889999999999954

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.8e-38  Score=242.48  Aligned_cols=170  Identities=21%  Similarity=0.322  Sum_probs=150.1

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc-------cHHHHHHHHHHHhccCCCceeeecccccccc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH-------STRNFMHHIELISKLRHCHLVSALGHCFECY   93 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~-------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   93 (206)
                      ....|.+.+.||+|+||.|-+|..+ +|+.||||.+.+.+..       ....+.+|+++|++++||||+++++++..  
T Consensus       170 ~~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~--  247 (475)
T KOG0615|consen  170 FNDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEV--  247 (475)
T ss_pred             hcceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeec--
Confidence            4567889999999999999999976 8999999999865422       22346799999999999999999999965  


Q ss_pred             ccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC---C
Q 028629           94 FDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN---L  170 (206)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~---~  170 (206)
                           ..+.|+|+||++||+|.+++-.+   ..+.+..-..++.|++.|+.|||+   .||+||||||+|||+..+   .
T Consensus       248 -----~ds~YmVlE~v~GGeLfd~vv~n---k~l~ed~~K~~f~Qll~avkYLH~---~GI~HRDiKPeNILl~~~~e~~  316 (475)
T KOG0615|consen  248 -----PDSSYMVLEYVEGGELFDKVVAN---KYLREDLGKLLFKQLLTAVKYLHS---QGIIHRDIKPENILLSNDAEDC  316 (475)
T ss_pred             -----CCceEEEEEEecCccHHHHHHhc---cccccchhHHHHHHHHHHHHHHHH---cCcccccCCcceEEeccCCcce
Confidence                 66789999999999999999876   457788888999999999999999   899999999999999866   7


Q ss_pred             ceeEccCCccccccccccccccccCccccCCCCC
Q 028629          171 VAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       171 ~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      .+||+|||+|+...+..--...+||+.|.|||-.
T Consensus       317 llKItDFGlAK~~g~~sfm~TlCGTpsYvAPEVl  350 (475)
T KOG0615|consen  317 LLKITDFGLAKVSGEGSFMKTLCGTPSYVAPEVL  350 (475)
T ss_pred             EEEecccchhhccccceehhhhcCCccccChhhe
Confidence            8999999999999887777779999999999964

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.1e-37  Score=250.53  Aligned_cols=170  Identities=20%  Similarity=0.412  Sum_probs=156.6

Q ss_pred             cCCcccceeccCcceeEEEEEE-eCCcEEEEEEeecC---CCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~-~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .+|..++.||+|+|+.||.++. .+|+.||+|++.+.   +....+.+.+||++.++++||||++++++|.+       .
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FED-------s   90 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFED-------S   90 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeec-------C
Confidence            5799999999999999999997 58999999999864   46667889999999999999999999999976       6


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ++.|+++|.|++++|.++++.+   .++++.+...+.+||+.||.|||+   .+|+|||||..|++++++.++||+|||+
T Consensus        91 ~nVYivLELC~~~sL~el~Krr---k~ltEpEary~l~QIv~GlkYLH~---~~IiHRDLKLGNlfL~~~~~VKIgDFGL  164 (592)
T KOG0575|consen   91 NNVYIVLELCHRGSLMELLKRR---KPLTEPEARYFLRQIVEGLKYLHS---LGIIHRDLKLGNLFLNENMNVKIGDFGL  164 (592)
T ss_pred             CceEEEEEecCCccHHHHHHhc---CCCCcHHHHHHHHHHHHHHHHHHh---cCceecccchhheeecCcCcEEecccce
Confidence            7899999999999999999865   679999999999999999999999   7999999999999999999999999999


Q ss_pred             ccccccc-ccccccccCccccCCCCCCC
Q 028629          180 PLLAENA-EKVGHVTPYSGSINPTNSAR  206 (206)
Q Consensus       180 a~~~~~~-~~~~~~~~~~~y~aPE~~~~  206 (206)
                      |..++.+ ++....+||+.|.|||-.++
T Consensus       165 At~le~~~Erk~TlCGTPNYIAPEVl~k  192 (592)
T KOG0575|consen  165 ATQLEYDGERKKTLCGTPNYIAPEVLNK  192 (592)
T ss_pred             eeeecCcccccceecCCCcccChhHhcc
Confidence            9998865 78888999999999997653

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=7.9e-38  Score=238.71  Aligned_cols=169  Identities=17%  Similarity=0.347  Sum_probs=151.5

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC-CCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc-
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS-  100 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~-  100 (206)
                      .+.+.+..||+|..|.||+++++ ++..+|+|++... .....+++.+|+++++.++||+|+.+++.|.+       .. 
T Consensus        79 ~dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~-------~~~  151 (364)
T KOG0581|consen   79 SDLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYS-------NGE  151 (364)
T ss_pred             HHhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEe-------CCc
Confidence            36778889999999999999987 8999999999544 34556789999999999999999999999987       44 


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ...++||||++|+|..++...   +.+++..+..++.++++||.|||+.  ..|+||||||+|+||+..|.+||||||.+
T Consensus       152 ~isI~mEYMDgGSLd~~~k~~---g~i~E~~L~~ia~~VL~GL~YLh~~--~~IIHRDIKPsNlLvNskGeVKicDFGVS  226 (364)
T KOG0581|consen  152 EISICMEYMDGGSLDDILKRV---GRIPEPVLGKIARAVLRGLSYLHEE--RKIIHRDIKPSNLLVNSKGEVKICDFGVS  226 (364)
T ss_pred             eEEeehhhcCCCCHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHhhc--cCeeeccCCHHHeeeccCCCEEecccccc
Confidence            499999999999999999876   4589999999999999999999964  79999999999999999999999999999


Q ss_pred             ccccccccccccccCccccCCCCCC
Q 028629          181 LLAENAEKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       181 ~~~~~~~~~~~~~~~~~y~aPE~~~  205 (206)
                      ..+.+. ..+...||..|||||..+
T Consensus       227 ~~lvnS-~a~tfvGT~~YMsPERi~  250 (364)
T KOG0581|consen  227 GILVNS-IANTFVGTSAYMSPERIS  250 (364)
T ss_pred             HHhhhh-hcccccccccccChhhhc
Confidence            988776 677899999999999864

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-37  Score=236.08  Aligned_cols=170  Identities=20%  Similarity=0.348  Sum_probs=151.6

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ...+|++.+.||+|+||.||.++.+ +++.+|+|++++..   ....+....|..+|.+++||+|+++.-.|.+      
T Consensus        23 ~~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt------   96 (357)
T KOG0598|consen   23 GPDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQT------   96 (357)
T ss_pred             ChhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEeccc------
Confidence            3578999999999999999999976 79999999998764   3456678899999999999999999887765      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       ...+|+|+||+.||.|.-.+++.   ..+++.....++.+|+.||.|||+   .+|+||||||+|||+|++|.++|+||
T Consensus        97 -~~kLylVld~~~GGeLf~hL~~e---g~F~E~~arfYlaEi~lAL~~LH~---~gIiyRDlKPENILLd~~GHi~LtDF  169 (357)
T KOG0598|consen   97 -EEKLYLVLDYLNGGELFYHLQRE---GRFSEDRARFYLAEIVLALGYLHS---KGIIYRDLKPENILLDEQGHIKLTDF  169 (357)
T ss_pred             -CCeEEEEEeccCCccHHHHHHhc---CCcchhHHHHHHHHHHHHHHHHHh---CCeeeccCCHHHeeecCCCcEEEecc
Confidence             78999999999999999999876   358999999999999999999999   89999999999999999999999999


Q ss_pred             Cccccccc-cccccccccCccccCCCCC
Q 028629          178 NLPLLAEN-AEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~-~~~~~~~~~~~~y~aPE~~  204 (206)
                      |+++.... .......+||+.|||||..
T Consensus       170 gL~k~~~~~~~~t~tfcGT~eYmAPEil  197 (357)
T KOG0598|consen  170 GLCKEDLKDGDATRTFCGTPEYMAPEIL  197 (357)
T ss_pred             ccchhcccCCCccccccCCccccChHHH
Confidence            99996544 3556667999999999964

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=2.6e-36  Score=225.17  Aligned_cols=168  Identities=18%  Similarity=0.277  Sum_probs=146.2

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      +.|+.+.++|+|++|.|++|+.+ +|+.||||.+.-..  +...+-.++|+++|++++|+|++.+.++|..       ..
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrr-------kr   74 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRR-------KR   74 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHh-------cc
Confidence            56888899999999999999987 79999999986332  3334557889999999999999999999965       67


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      .+++|+|||+. ++.+-++...  ..++.+.+..++.|++.|+.|+|.   .+++||||||+||||+.++.+|+||||+|
T Consensus        75 klhLVFE~~dh-TvL~eLe~~p--~G~~~~~vk~~l~Q~l~ai~~cHk---~n~IHRDIKPENILit~~gvvKLCDFGFA  148 (396)
T KOG0593|consen   75 KLHLVFEYCDH-TVLHELERYP--NGVPSELVKKYLYQLLKAIHFCHK---NNCIHRDIKPENILITQNGVVKLCDFGFA  148 (396)
T ss_pred             eeEEEeeecch-HHHHHHHhcc--CCCCHHHHHHHHHHHHHHhhhhhh---cCeecccCChhheEEecCCcEEeccchhh
Confidence            89999999987 6666666554  458999999999999999999999   69999999999999999999999999999


Q ss_pred             cccc-ccccccccccCccccCCCCC
Q 028629          181 LLAE-NAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~-~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +.+. +...-..+.-|.||+|||..
T Consensus       149 R~L~~pgd~YTDYVATRWYRaPELL  173 (396)
T KOG0593|consen  149 RTLSAPGDNYTDYVATRWYRAPELL  173 (396)
T ss_pred             HhhcCCcchhhhhhhhhhccChhhh
Confidence            9887 55666778999999999963

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-35  Score=233.22  Aligned_cols=176  Identities=24%  Similarity=0.449  Sum_probs=147.6

Q ss_pred             HHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCC--ccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           19 LEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        19 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      +..........+.+|.|+||+||+|.+++...||+|.+.....  ...+.+.+|+.+|++++||||++++|+|.+     
T Consensus        36 ~~i~~~~l~~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~-----  110 (362)
T KOG0192|consen   36 EEIDPDELPIEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTS-----  110 (362)
T ss_pred             eecChHHhhhhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC-----
Confidence            3334455666777999999999999998444499999975432  225689999999999999999999999976     


Q ss_pred             CCCc-eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCc-eeccCCccccEEecCCC-cee
Q 028629           97 SSVS-RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG-VFSNNLKITDILLDQNL-VAK  173 (206)
Q Consensus        97 ~~~~-~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~-i~h~dl~p~nil~~~~~-~~k  173 (206)
                        .. .+++||||+++|+|.+++..... ..+++..+..++.||+.||.|||+   .+ |+||||||+|+|++.+. .+|
T Consensus       111 --~~~~~~iVtEy~~~GsL~~~l~~~~~-~~l~~~~~l~~aldiArGm~YLH~---~~~iIHrDLK~~NiLv~~~~~~~K  184 (362)
T KOG0192|consen  111 --PPGSLCIVTEYMPGGSLSVLLHKKRK-RKLPLKVRLRIALDIARGMEYLHS---EGPIIHRDLKSDNILVDLKGKTLK  184 (362)
T ss_pred             --CCCceEEEEEeCCCCcHHHHHhhccc-CCCCHHHHHHHHHHHHHHHHHHhc---CCCeeecccChhhEEEcCCCCEEE
Confidence              33 68999999999999999987311 579999999999999999999999   67 99999999999999997 999


Q ss_pred             EccCCcccccccc-ccccccccCccccCCCCCC
Q 028629          174 ISSYNLPLLAENA-EKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       174 l~df~~a~~~~~~-~~~~~~~~~~~y~aPE~~~  205 (206)
                      |+|||+++..... .......||..|||||...
T Consensus       185 I~DFGlsr~~~~~~~~~~~~~GT~~wMAPEv~~  217 (362)
T KOG0192|consen  185 IADFGLSREKVISKTSMTSVAGTYRWMAPEVLR  217 (362)
T ss_pred             ECCCccceeeccccccccCCCCCccccChhhhc
Confidence            9999999877654 3333379999999999754

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1e-35  Score=234.63  Aligned_cols=171  Identities=21%  Similarity=0.339  Sum_probs=148.6

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ...|+.++.||+|+||.||+|+.. +|+.||+|.+..+.  .....-..+||.+|++++||||+++.+...+     ...
T Consensus       116 ~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~-----~~~  190 (560)
T KOG0600|consen  116 ADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTS-----KLS  190 (560)
T ss_pred             hHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEe-----cCC
Confidence            467888999999999999999965 89999999997664  5555667889999999999999999998876     224


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ..+|+|+||++. +|.-++....  -.+++.++..++.|++.||.|+|.   .+|.|||||.+|||||++|.+||+|||+
T Consensus       191 ~siYlVFeYMdh-DL~GLl~~p~--vkft~~qIKc~mkQLl~Gl~~cH~---~gvlHRDIK~SNiLidn~G~LKiaDFGL  264 (560)
T KOG0600|consen  191 GSIYLVFEYMDH-DLSGLLSSPG--VKFTEPQIKCYMKQLLEGLEYCHS---RGVLHRDIKGSNILIDNNGVLKIADFGL  264 (560)
T ss_pred             ceEEEEEecccc-hhhhhhcCCC--cccChHHHHHHHHHHHHHHHHHhh---cCeeeccccccceEEcCCCCEEeccccc
Confidence            689999999987 8988887632  458999999999999999999999   8999999999999999999999999999


Q ss_pred             cccccccc--cccccccCccccCCCCC
Q 028629          180 PLLAENAE--KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~--~~~~~~~~~~y~aPE~~  204 (206)
                      |++++...  ......-|.||+|||..
T Consensus       265 Ar~y~~~~~~~~T~rVvTLWYRpPELL  291 (560)
T KOG0600|consen  265 ARFYTPSGSAPYTSRVVTLWYRPPELL  291 (560)
T ss_pred             eeeccCCCCcccccceEEeeccChHHh
Confidence            99876654  34456888999999963

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=2.2e-35  Score=216.50  Aligned_cols=167  Identities=20%  Similarity=0.368  Sum_probs=147.4

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .+|...+.+|+|.||.||+|+.. +|+.||||.++...  ........+|++.|+.++|+||+.+.++|.+       .+
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~-------~~   74 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPH-------KS   74 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccC-------CC
Confidence            47888999999999999999965 89999999998653  3345678899999999999999999999976       67


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ++.+|+||++. +|+..++...  -.++...+..|+.++++|++|||+   ..|.||||||.|+|++++|.+||+|||+|
T Consensus        75 ~l~lVfEfm~t-dLe~vIkd~~--i~l~pa~iK~y~~m~LkGl~y~H~---~~IlHRDlKPnNLLis~~g~lKiADFGLA  148 (318)
T KOG0659|consen   75 NLSLVFEFMPT-DLEVVIKDKN--IILSPADIKSYMLMTLKGLAYCHS---KWILHRDLKPNNLLISSDGQLKIADFGLA  148 (318)
T ss_pred             ceEEEEEeccc-cHHHHhcccc--cccCHHHHHHHHHHHHHHHHHHHh---hhhhcccCCccceEEcCCCcEEeecccch
Confidence            89999999976 9999998765  579999999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccccc-cccccCccccCCCC
Q 028629          181 LLAENAEKV-GHVTPYSGSINPTN  203 (206)
Q Consensus       181 ~~~~~~~~~-~~~~~~~~y~aPE~  203 (206)
                      +...++... ....-|.||+|||.
T Consensus       149 r~f~~p~~~~~~~V~TRWYRAPEL  172 (318)
T KOG0659|consen  149 RFFGSPNRIQTHQVVTRWYRAPEL  172 (318)
T ss_pred             hccCCCCcccccceeeeeccChHH
Confidence            998766433 33478899999994

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-36  Score=236.28  Aligned_cols=171  Identities=18%  Similarity=0.287  Sum_probs=150.5

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCcc-HHHHHHHHHHHhccC-CCceeeeccccccccccCCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHS-TRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~-~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ..++|...+.||.|+||.||+|+.. +|+.||||.++..-... .-.-++|+..|+++. |+||+++.+++.+      .
T Consensus         8 ~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d------~   81 (538)
T KOG0661|consen    8 FMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRD------N   81 (538)
T ss_pred             HHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhc------c
Confidence            4678999999999999999999965 79999999997543222 223467999999998 9999999999976      1


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ...+++||||++. +|.++++.++  ..+++..+..|+.||++||+|+|.   .|++|||+||+|||+..+..+||+|||
T Consensus        82 ~~~L~fVfE~Md~-NLYqLmK~R~--r~fse~~irnim~QilqGL~hiHk---~GfFHRDlKPENiLi~~~~~iKiaDFG  155 (538)
T KOG0661|consen   82 DRILYFVFEFMDC-NLYQLMKDRN--RLFSESDIRNIMYQILQGLAHIHK---HGFFHRDLKPENILISGNDVIKIADFG  155 (538)
T ss_pred             CceEeeeHHhhhh-hHHHHHhhcC--CcCCHHHHHHHHHHHHHHHHHHHh---cCcccccCChhheEecccceeEecccc
Confidence            2289999999966 9999998874  689999999999999999999999   699999999999999999999999999


Q ss_pred             ccccccccccccccccCccccCCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +|+.+.+...-..+..|+||+|||-.
T Consensus       156 LARev~SkpPYTeYVSTRWYRAPEvL  181 (538)
T KOG0661|consen  156 LAREVRSKPPYTEYVSTRWYRAPEVL  181 (538)
T ss_pred             cccccccCCCcchhhhcccccchHHh
Confidence            99999887777789999999999964

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-35  Score=218.27  Aligned_cols=167  Identities=22%  Similarity=0.355  Sum_probs=150.8

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ..+|+..+.||.|+||+|-+++.+ +|..+|+|+++++.   ..+.+...+|..+|+.+.||+++++.+.+.+       
T Consensus        43 l~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d-------  115 (355)
T KOG0616|consen   43 LQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKD-------  115 (355)
T ss_pred             hhhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeecc-------
Confidence            356999999999999999999977 79999999998764   3445677889999999999999999988876       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+++++||||++||.|.+++.+.   ..+++.....+|.||+.|+.|||+   .+|++|||||+|||+|++|.+||.|||
T Consensus       116 ~~~lymvmeyv~GGElFS~Lrk~---~rF~e~~arFYAAeivlAleylH~---~~iiYRDLKPENiLlD~~G~iKitDFG  189 (355)
T KOG0616|consen  116 NSNLYMVMEYVPGGELFSYLRKS---GRFSEPHARFYAAEIVLALEYLHS---LDIIYRDLKPENLLLDQNGHIKITDFG  189 (355)
T ss_pred             CCeEEEEEeccCCccHHHHHHhc---CCCCchhHHHHHHHHHHHHHHHHh---cCeeeccCChHHeeeccCCcEEEEecc
Confidence            67899999999999999999886   458999999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccccccccccCccccCCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +|+.....  .-+.+||+.|+|||-.
T Consensus       190 FAK~v~~r--T~TlCGTPeYLAPEii  213 (355)
T KOG0616|consen  190 FAKRVSGR--TWTLCGTPEYLAPEII  213 (355)
T ss_pred             ceEEecCc--EEEecCCccccChHHh
Confidence            99987654  5668999999999964

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.7e-36  Score=224.20  Aligned_cols=177  Identities=17%  Similarity=0.287  Sum_probs=148.7

Q ss_pred             hcCCcccceeccCcceeEEEEEE-eCCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~-~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ..+|++.+.||.|.||+||++.. .+|..+|.|.+..+.  ....+.+..|+.+|++++||||++++++.+.     ...
T Consensus        18 l~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~-----~~~   92 (375)
T KOG0591|consen   18 LADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFI-----EDN   92 (375)
T ss_pred             HHHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhh-----ccc
Confidence            45699999999999999999995 489999999998553  3345678999999999999999999996544     223


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCC-CCcccCHHHHHHHHHHHHHHHHHHhcCCC-CceeccCCccccEEecCCCceeEccC
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGH-AWQSLTWTQRISAAIGVARGIQFLHTGIV-PGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~-~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      ..++++||+|+.|+|.+.++... ....+++.++|.++.|+|.||..+|.... .-|+||||||.||+++.+|.+|++||
T Consensus        93 evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDf  172 (375)
T KOG0591|consen   93 EVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDF  172 (375)
T ss_pred             hhhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccc
Confidence            45899999999999999987532 22679999999999999999999998321 24899999999999999999999999


Q ss_pred             Cccccccccc-cccccccCccccCCCCC
Q 028629          178 NLPLLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      |+++...+.. -.....||+.||+||..
T Consensus       173 GL~r~l~s~~tfA~S~VGTPyYMSPE~i  200 (375)
T KOG0591|consen  173 GLGRFLSSKTTFAHSLVGTPYYMSPERI  200 (375)
T ss_pred             hhHhHhcchhHHHHhhcCCCcccCHHHH
Confidence            9999887654 34557999999999964

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.5e-34  Score=226.31  Aligned_cols=172  Identities=20%  Similarity=0.338  Sum_probs=152.3

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC----C-ccHHHHHHHHHHHhccC-CCceeeecccccccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK----S-HSTRNFMHHIELISKLR-HCHLVSALGHCFECY   93 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~----~-~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~   93 (206)
                      ...++|..++.||+|+||.|+.|... ++..||+|.++.+.    . ...+.+.+|+.+++.+. ||||+++++++..  
T Consensus        14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t--   91 (370)
T KOG0583|consen   14 LSIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFAT--   91 (370)
T ss_pred             cccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEec--
Confidence            34678999999999999999999976 78999999776541    2 23456778999999998 9999999999876  


Q ss_pred             ccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC-Cce
Q 028629           94 FDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN-LVA  172 (206)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~-~~~  172 (206)
                           ...+++||||+.+|+|.+.+...   ..+.+.....+++|++.|+.|+|+   .+|+||||||+|||++.+ +++
T Consensus        92 -----~~~~~ivmEy~~gGdL~~~i~~~---g~l~E~~ar~~F~Qlisav~y~H~---~gi~HRDLK~ENilld~~~~~~  160 (370)
T KOG0583|consen   92 -----PTKIYIVMEYCSGGDLFDYIVNK---GRLKEDEARKYFRQLISAVAYCHS---RGIVHRDLKPENILLDGNEGNL  160 (370)
T ss_pred             -----CCeEEEEEEecCCccHHHHHHHc---CCCChHHHHHHHHHHHHHHHHHHh---CCEeeCCCCHHHEEecCCCCCE
Confidence                 56799999999999999999884   458889999999999999999999   899999999999999998 999


Q ss_pred             eEccCCccccc-cccccccccccCccccCCCCCC
Q 028629          173 KISSYNLPLLA-ENAEKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       173 kl~df~~a~~~-~~~~~~~~~~~~~~y~aPE~~~  205 (206)
                      ||+|||++... .........+|++.|+|||..+
T Consensus       161 Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~  194 (370)
T KOG0583|consen  161 KLSDFGLSAISPGEDGLLKTFCGSPAYAAPEVLS  194 (370)
T ss_pred             EEeccccccccCCCCCcccCCCCCcccCCHHHhC
Confidence            99999999998 5667778899999999999764

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-32  Score=211.69  Aligned_cols=172  Identities=22%  Similarity=0.388  Sum_probs=148.2

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC-c
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV-S  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~-~  100 (206)
                      ..+|..++.||+|+||.||++... +|...|+|.+........+.+.+|+.+|++++|+||+++++....      .. .
T Consensus        16 ~~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~------~~~~   89 (313)
T KOG0198|consen   16 ISNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSS------REND   89 (313)
T ss_pred             cchhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCcccc------ccCe
Confidence            567899999999999999999975 589999999986643336778999999999999999999996432      12 3


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC-CCceeEccCCc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-NLVAKISSYNL  179 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~-~~~~kl~df~~  179 (206)
                      .+++.|||+++|+|.+++....+  .+++..+..+.+|++.||.|||+   .+++|+||||+|||++. ++.+||+|||+
T Consensus        90 ~~~i~mEy~~~GsL~~~~~~~g~--~l~E~~v~~ytr~iL~GL~ylHs---~g~vH~DiK~~NiLl~~~~~~~KlaDFG~  164 (313)
T KOG0198|consen   90 EYNIFMEYAPGGSLSDLIKRYGG--KLPEPLVRRYTRQILEGLAYLHS---KGIVHCDIKPANILLDPSNGDVKLADFGL  164 (313)
T ss_pred             eeEeeeeccCCCcHHHHHHHcCC--CCCHHHHHHHHHHHHHHHHHHHh---CCEeccCcccceEEEeCCCCeEEeccCcc
Confidence            68999999999999999987642  58999999999999999999999   89999999999999999 79999999999


Q ss_pred             cccccc----cccccccccCccccCCCCCC
Q 028629          180 PLLAEN----AEKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       180 a~~~~~----~~~~~~~~~~~~y~aPE~~~  205 (206)
                      +.....    ........||+.|||||...
T Consensus       165 a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~  194 (313)
T KOG0198|consen  165 AKKLESKGTKSDSELSVQGTPNYMAPEVIR  194 (313)
T ss_pred             ccccccccccccccccccCCccccCchhhc
Confidence            987663    22344578999999999864

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-33  Score=220.24  Aligned_cols=177  Identities=19%  Similarity=0.333  Sum_probs=148.1

Q ss_pred             HHHHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--------------CccHHHHHHHHHHHhccCCCc
Q 028629           17 EELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--------------SHSTRNFMHHIELISKLRHCH   81 (206)
Q Consensus        17 ~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--------------~~~~~~~~~e~~~l~~l~h~~   81 (206)
                      .+.....|+|.+.+.||+|.||.|-+|+.. +++.||||++.+..              ....+.+.+||.+|++++|+|
T Consensus        90 ~~~~k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~n  169 (576)
T KOG0585|consen   90 DQDRKQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPN  169 (576)
T ss_pred             cccceehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcC
Confidence            345566799999999999999999999965 79999999997532              122457899999999999999


Q ss_pred             eeeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCcc
Q 028629           82 LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKI  161 (206)
Q Consensus        82 i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p  161 (206)
                      |++++++.-+     +..+++|+|+|||+.|.+...-...   ..+++.+.+.+++++..||.|||.   ++|+||||||
T Consensus       170 VV~LiEvLDD-----P~s~~~YlVley~s~G~v~w~p~d~---~els~~~Ar~ylrDvv~GLEYLH~---QgiiHRDIKP  238 (576)
T KOG0585|consen  170 VVKLIEVLDD-----PESDKLYLVLEYCSKGEVKWCPPDK---PELSEQQARKYLRDVVLGLEYLHY---QGIIHRDIKP  238 (576)
T ss_pred             eeEEEEeecC-----cccCceEEEEEeccCCccccCCCCc---ccccHHHHHHHHHHHHHHHHHHHh---cCeeccccch
Confidence            9999998754     5567899999999988776433221   238999999999999999999999   8999999999


Q ss_pred             ccEEecCCCceeEccCCccccc------cccccccccccCccccCCCCC
Q 028629          162 TDILLDQNLVAKISSYNLPLLA------ENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       162 ~nil~~~~~~~kl~df~~a~~~------~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +|+||+++|.+||+|||.+...      ++........||+.|+|||.-
T Consensus       239 sNLLl~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c  287 (576)
T KOG0585|consen  239 SNLLLSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELC  287 (576)
T ss_pred             hheEEcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhh
Confidence            9999999999999999999865      333344447999999999963

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-33  Score=224.25  Aligned_cols=172  Identities=23%  Similarity=0.341  Sum_probs=148.3

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhcc-CCCceeeecccccccccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFD   95 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~   95 (206)
                      .-.++|..++.||.|.|++|++|+.. +++.||||++++.-   ..-.+-+..|-..|.+| .||.|++++-.|.+    
T Consensus        70 k~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD----  145 (604)
T KOG0592|consen   70 KTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQD----  145 (604)
T ss_pred             CChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeec----
Confidence            44678999999999999999999966 89999999997542   22223456688889899 89999999988876    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                         +.++|+|+||+++|+|.+.+.+.   ..+++.-...++.+|+.||.|||+   .|||||||||+|||+|.+++++|.
T Consensus       146 ---~~sLYFvLe~A~nGdll~~i~K~---Gsfde~caR~YAAeIldAleylH~---~GIIHRDlKPENILLd~dmhikIT  216 (604)
T KOG0592|consen  146 ---EESLYFVLEYAPNGDLLDLIKKY---GSFDETCARFYAAEILDALEYLHS---NGIIHRDLKPENILLDKDGHIKIT  216 (604)
T ss_pred             ---ccceEEEEEecCCCcHHHHHHHh---CcchHHHHHHHHHHHHHHHHHHHh---cCceeccCChhheeEcCCCcEEEe
Confidence               67899999999999999999887   459999999999999999999999   799999999999999999999999


Q ss_pred             cCCcccccccccc--------------ccccccCccccCCCCCC
Q 028629          176 SYNLPLLAENAEK--------------VGHVTPYSGSINPTNSA  205 (206)
Q Consensus       176 df~~a~~~~~~~~--------------~~~~~~~~~y~aPE~~~  205 (206)
                      |||.|+++.+...              .....||..|++||...
T Consensus       217 DFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~  260 (604)
T KOG0592|consen  217 DFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLN  260 (604)
T ss_pred             eccccccCChhhccccCccCcccccCcccceeeeecccCHHHhc
Confidence            9999987654321              14478999999999764

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.3e-33  Score=204.31  Aligned_cols=171  Identities=22%  Similarity=0.365  Sum_probs=151.8

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|.+++.||+|.||.||.|+.+ ++-.||+|++.++.   .....++.+|+++-+.++||||++++++|.+       
T Consensus        21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd-------   93 (281)
T KOG0580|consen   21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHD-------   93 (281)
T ss_pred             hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheec-------
Confidence            356999999999999999999976 78889999997653   3445678999999999999999999999976       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ....|+++||.+.|++...+..+.. ..+++...+.+..|++.|+.|+|.   .+++||||||+|+|++.++.+|++|||
T Consensus        94 ~~riyLilEya~~gel~k~L~~~~~-~~f~e~~~a~Yi~q~A~Al~y~h~---k~VIhRdiKpenlLlg~~~~lkiAdfG  169 (281)
T KOG0580|consen   94 SKRIYLILEYAPRGELYKDLQEGRM-KRFDEQRAATYIKQLANALLYCHL---KRVIHRDIKPENLLLGSAGELKIADFG  169 (281)
T ss_pred             cceeEEEEEecCCchHHHHHHhccc-ccccccchhHHHHHHHHHHHHhcc---CCcccCCCCHHHhccCCCCCeeccCCC
Confidence            6789999999999999998885544 568888999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccccccccccCccccCCCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~~~  205 (206)
                      -+.... ..+....+||..|++||...
T Consensus       170 wsV~~p-~~kR~tlcgt~dyl~pEmv~  195 (281)
T KOG0580|consen  170 WSVHAP-SNKRKTLCGTLDYLPPEMVE  195 (281)
T ss_pred             ceeecC-CCCceeeecccccCCHhhcC
Confidence            998776 45667799999999999764

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.3e-33  Score=218.41  Aligned_cols=170  Identities=22%  Similarity=0.349  Sum_probs=153.6

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccH---HHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHST---RNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~---~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ...+|.+.+.||+|+||.|-++..+ .|+.||||.+.+++..+.   -.+.+||++|+.++||||++++.+|..      
T Consensus        51 lkHRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFEN------  124 (668)
T KOG0611|consen   51 LKHRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFEN------  124 (668)
T ss_pred             hhhHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcC------
Confidence            3578999999999999999999964 899999999987764443   457889999999999999999999965      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       .+.+.+||||.++|.|.+++..+   ..+++.....+++||..|+.|+|.   .+++|||||.+|||+|+++++||+||
T Consensus       125 -kdKIvivMEYaS~GeLYDYiSer---~~LsErEaRhfFRQIvSAVhYCHk---nrVvHRDLKLENILLD~N~NiKIADF  197 (668)
T KOG0611|consen  125 -KDKIVIVMEYASGGELYDYISER---GSLSEREARHFFRQIVSAVHYCHK---NRVVHRDLKLENILLDQNNNIKIADF  197 (668)
T ss_pred             -CceEEEEEEecCCccHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHhh---ccceecccchhheeecCCCCeeeecc
Confidence             67899999999999999999887   569999999999999999999999   59999999999999999999999999


Q ss_pred             CccccccccccccccccCccccCCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |++-+.....-.+..+|++-|.+||-.
T Consensus       198 GLSNly~~~kfLqTFCGSPLYASPEIv  224 (668)
T KOG0611|consen  198 GLSNLYADKKFLQTFCGSPLYASPEIV  224 (668)
T ss_pred             chhhhhccccHHHHhcCCcccCCcccc
Confidence            999988877777788999999999954

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=1.7e-33  Score=212.55  Aligned_cols=174  Identities=22%  Similarity=0.326  Sum_probs=150.9

Q ss_pred             HHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           19 LEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        19 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      .+...+.|+.++.|++|+||.||+|+.. +++.||+|+++.++  ...--.-.+||.+|.+++||||+.+..+.+.    
T Consensus        71 gCrsv~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG----  146 (419)
T KOG0663|consen   71 GCRSVEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVG----  146 (419)
T ss_pred             CcccHHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEec----
Confidence            3445667999999999999999999975 89999999997654  3333456789999999999999999998876    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                       +.-+.+|+||||++. +|..++....  +++...++..+..|++.|+.|||.   ..|+||||||+|+|+++.|.+||+
T Consensus       147 -~~~d~iy~VMe~~Eh-DLksl~d~m~--q~F~~~evK~L~~QlL~glk~lH~---~wilHRDLK~SNLLm~~~G~lKia  219 (419)
T KOG0663|consen  147 -SNMDKIYIVMEYVEH-DLKSLMETMK--QPFLPGEVKTLMLQLLRGLKHLHD---NWILHRDLKTSNLLLSHKGILKIA  219 (419)
T ss_pred             -cccceeeeeHHHHHh-hHHHHHHhcc--CCCchHHHHHHHHHHHHHHHHHhh---ceeEecccchhheeeccCCcEEec
Confidence             345679999999987 9999998765  679999999999999999999999   699999999999999999999999


Q ss_pred             cCCcccccccccc-ccccccCccccCCCC
Q 028629          176 SYNLPLLAENAEK-VGHVTPYSGSINPTN  203 (206)
Q Consensus       176 df~~a~~~~~~~~-~~~~~~~~~y~aPE~  203 (206)
                      |||+|+.+.++.+ -....-|.||+|||.
T Consensus       220 DFGLAR~ygsp~k~~T~lVVTLWYRaPEL  248 (419)
T KOG0663|consen  220 DFGLAREYGSPLKPYTPLVVTLWYRAPEL  248 (419)
T ss_pred             ccchhhhhcCCcccCcceEEEeeecCHHH
Confidence            9999999988743 344688899999995

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-33  Score=222.48  Aligned_cols=170  Identities=19%  Similarity=0.364  Sum_probs=155.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ...|.....||+|+.|.||.+... ++..||+|+++.......+-+.+|+.+|+..+|+||+.+++.++.       .+.
T Consensus       272 ~~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv-------~de  344 (550)
T KOG0578|consen  272 RSKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLV-------GDE  344 (550)
T ss_pred             hhhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcc-------cce
Confidence            357888899999999999999965 788999999998877777889999999999999999999998765       578


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      +|+||||++||+|.+.+...    .+++.++..+++++++||.|||.   .+|+|||||.+|||++.++.+||+|||++.
T Consensus       345 LWVVMEym~ggsLTDvVt~~----~~~E~qIA~Icre~l~aL~fLH~---~gIiHrDIKSDnILL~~~g~vKltDFGFca  417 (550)
T KOG0578|consen  345 LWVVMEYMEGGSLTDVVTKT----RMTEGQIAAICREILQGLKFLHA---RGIIHRDIKSDNILLTMDGSVKLTDFGFCA  417 (550)
T ss_pred             eEEEEeecCCCchhhhhhcc----cccHHHHHHHHHHHHHHHHHHHh---cceeeeccccceeEeccCCcEEEeeeeeee
Confidence            99999999999999999874    48999999999999999999999   799999999999999999999999999999


Q ss_pred             cccccc-cccccccCccccCCCCCCC
Q 028629          182 LAENAE-KVGHVTPYSGSINPTNSAR  206 (206)
Q Consensus       182 ~~~~~~-~~~~~~~~~~y~aPE~~~~  206 (206)
                      .+.... +.....||+.|||||.+.|
T Consensus       418 qi~~~~~KR~TmVGTPYWMAPEVvtr  443 (550)
T KOG0578|consen  418 QISEEQSKRSTMVGTPYWMAPEVVTR  443 (550)
T ss_pred             ccccccCccccccCCCCccchhhhhh
Confidence            876654 7788999999999998765

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=2.8e-33  Score=223.81  Aligned_cols=168  Identities=18%  Similarity=0.348  Sum_probs=150.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|.+.++||+|.||.||+|+.+ +.+.||+|.+++.+  .+..+.+.+|++++++++||||+.++++|.+       .
T Consensus         1 me~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt-------~   73 (808)
T KOG0597|consen    1 MEQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFET-------S   73 (808)
T ss_pred             CcchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcc-------c
Confidence            367999999999999999999976 78999999998765  3446678999999999999999999998865       6


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ..+|+|+||+.| +|..++...   ..++++.+..++.++..||.|||+   .+|.|+|+||.|||++.++.+|+||||+
T Consensus        74 ~~~~vVte~a~g-~L~~il~~d---~~lpEe~v~~~a~~LVsaL~yLhs---~rilhrd~kPqniLl~~~~~~KlcdFg~  146 (808)
T KOG0597|consen   74 AHLWVVTEYAVG-DLFTILEQD---GKLPEEQVRAIAYDLVSALYYLHS---NRILHRDMKPQNILLEKGGTLKLCDFGL  146 (808)
T ss_pred             ceEEEEehhhhh-hHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHh---cCcccccCCcceeeecCCCceeechhhh
Confidence            789999999987 999999887   459999999999999999999999   6999999999999999999999999999


Q ss_pred             ccccccc-ccccccccCccccCCCCC
Q 028629          180 PLLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      |+.+... .....+.||+-|||||..
T Consensus       147 Ar~m~~~t~vltsikGtPlYmAPElv  172 (808)
T KOG0597|consen  147 ARAMSTNTSVLTSIKGTPLYMAPELV  172 (808)
T ss_pred             hhhcccCceeeeeccCcccccCHHHH
Confidence            9987654 455668999999999965

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=1.3e-32  Score=218.44  Aligned_cols=146  Identities=19%  Similarity=0.335  Sum_probs=134.3

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|+.++.||+|+||+||+|+-+ +|..+|+|.+++..   ....+.+..|-.+|...+++.|++++..|.+       
T Consensus       140 ~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD-------  212 (550)
T KOG0605|consen  140 LDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQD-------  212 (550)
T ss_pred             cccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecC-------
Confidence            478999999999999999999977 79999999998653   4556678889999999999999999998876       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ..++||+|||++||++..++...   ..+++.....++.+++.|+.-+|+   .|++||||||+|+|||..|.+||+|||
T Consensus       213 ~~~LYLiMEylPGGD~mTLL~~~---~~L~e~~arfYiaE~vlAI~~iH~---~gyIHRDIKPdNlLiD~~GHiKLSDFG  286 (550)
T KOG0605|consen  213 KEYLYLIMEYLPGGDMMTLLMRK---DTLTEDWARFYIAETVLAIESIHQ---LGYIHRDIKPDNLLIDAKGHIKLSDFG  286 (550)
T ss_pred             CCeeEEEEEecCCccHHHHHHhc---CcCchHHHHHHHHHHHHHHHHHHH---cCcccccCChhheeecCCCCEeecccc
Confidence            77999999999999999999877   579999999999999999999999   899999999999999999999999999


Q ss_pred             ccc
Q 028629          179 LPL  181 (206)
Q Consensus       179 ~a~  181 (206)
                      ++.
T Consensus       287 Ls~  289 (550)
T KOG0605|consen  287 LST  289 (550)
T ss_pred             ccc
Confidence            994

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.3e-33  Score=221.26  Aligned_cols=175  Identities=25%  Similarity=0.432  Sum_probs=147.0

Q ss_pred             HHHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        18 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .+......+..++.||+|.||.|+.|.+.+...||+|.++.. ....+.+.+|+++|+++.|++|++++++|..      
T Consensus       200 ~wei~r~~l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~-~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~------  272 (468)
T KOG0197|consen  200 PWEIPREELKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEG-SMSPEAFLREAQIMKKLRHEKLVKLYGVCTK------  272 (468)
T ss_pred             CeeecHHHHHHHHHhcCCccceEEEEEEcCCCcccceEEecc-ccChhHHHHHHHHHHhCcccCeEEEEEEEec------
Confidence            344455667888999999999999999986779999999844 5566788899999999999999999999975      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       +..++|||||++.|+|.+++....+ ..++....+.++.|||.||.||++   .++|||||.++||||+++..+||+||
T Consensus       273 -~~piyIVtE~m~~GsLl~yLr~~~~-~~l~~~~Ll~~a~qIaeGM~YLes---~~~IHRDLAARNiLV~~~~~vKIsDF  347 (468)
T KOG0197|consen  273 -QEPIYIVTEYMPKGSLLDYLRTREG-GLLNLPQLLDFAAQIAEGMAYLES---KNYIHRDLAARNILVDEDLVVKISDF  347 (468)
T ss_pred             -CCceEEEEEecccCcHHHHhhhcCC-CccchHHHHHHHHHHHHHHHHHHh---CCccchhhhhhheeeccCceEEEccc
Confidence             4579999999999999999987333 668899999999999999999999   89999999999999999999999999


Q ss_pred             Cccccccccc-ccccc-ccCccccCCCCC
Q 028629          178 NLPLLAENAE-KVGHV-TPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~-~~~~~-~~~~~y~aPE~~  204 (206)
                      |+|+.+..+. ....- .-..-+.|||..
T Consensus       348 GLAr~~~d~~Y~~~~~~kfPIkWtAPEa~  376 (468)
T KOG0197|consen  348 GLARLIGDDEYTASEGGKFPIKWTAPEAL  376 (468)
T ss_pred             ccccccCCCceeecCCCCCCceecCHHHH
Confidence            9999665443 12111 112347899864

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=2.9e-32  Score=207.58  Aligned_cols=176  Identities=20%  Similarity=0.353  Sum_probs=146.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC--ccHHHHHHHHHHHhccCCCc-eeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCH-LVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~~~   98 (206)
                      ...|...++||+|++|.||+|+.. +|+.||+|.+..+..  ..-....+|+.+++.++|+| |+.+++++.+... ...
T Consensus        10 ~~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~-~~~   88 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNN-HRG   88 (323)
T ss_pred             HHHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeeccc-ccc
Confidence            456888889999999999999976 899999999976643  23345678999999999999 9999998865211 122


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCC-cccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAW-QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      ...+++++||++. +|..++...... +.++...+..+++|++.|+.|||+   .+|+||||||.||||+++|.+||+||
T Consensus        89 ~~~l~lvfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~---~~IlHRDLKPQNlLi~~~G~lKlaDF  164 (323)
T KOG0594|consen   89 IGKLYLVFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHS---HGILHRDLKPQNLLISSSGVLKLADF  164 (323)
T ss_pred             cceEEEEEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHh---CCeecccCCcceEEECCCCcEeeecc
Confidence            3489999999976 999999875421 357778999999999999999999   79999999999999999999999999


Q ss_pred             Ccccccccc-ccccccccCccccCCCC
Q 028629          178 NLPLLAENA-EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       178 ~~a~~~~~~-~~~~~~~~~~~y~aPE~  203 (206)
                      |+|+-..-+ ........|.+|+|||.
T Consensus       165 GlAra~~ip~~~yt~evvTlWYRaPEv  191 (323)
T KOG0594|consen  165 GLARAFSIPMRTYTPEVVTLWYRAPEV  191 (323)
T ss_pred             chHHHhcCCcccccccEEEeeccCHHH
Confidence            999977644 33556788999999995

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.3e-33  Score=213.90  Aligned_cols=172  Identities=21%  Similarity=0.278  Sum_probs=144.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      .-.|...+.+|.|.||.||.|... +++.||||.+..++...    -.|.++|+.++||||+++.-+|......  ..-+
T Consensus        23 ~i~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~k----nrEl~im~~l~HpNIV~L~~~f~~~~~~--d~~~   96 (364)
T KOG0658|consen   23 EISYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRYK----NRELQIMRKLDHPNIVRLLYFFSSSTES--DEVY   96 (364)
T ss_pred             EEEEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCcC----cHHHHHHHhcCCcCeeeEEEEEEecCCC--chhH
Confidence            346888999999999999999976 68999999987554432    2489999999999999998888763322  1346


Q ss_pred             EEEEEeecCCCCHHHHHhcC-CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC-CceeEccCCc
Q 028629          102 IFLIFEYVPNGTLRSWISEG-HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN-LVAKISSYNL  179 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~-~~~kl~df~~  179 (206)
                      +.+||||++. +|.+.++.. ...+.++...+.-+..|+..||.|||+   .+|+||||||.|+|+|.+ +.+||||||.
T Consensus        97 lnlVleymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~---~~IcHRDIKPqNlLvD~~tg~LKicDFGS  172 (364)
T KOG0658|consen   97 LNLVLEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHS---HGICHRDIKPQNLLVDPDTGVLKICDFGS  172 (364)
T ss_pred             HHHHHHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHh---cCcccCCCChheEEEcCCCCeEEeccCCc
Confidence            7889999977 899888742 112568888888999999999999999   899999999999999965 9999999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |+.+...+....+.-++.|+|||..
T Consensus       173 AK~L~~~epniSYicSRyYRaPELi  197 (364)
T KOG0658|consen  173 AKVLVKGEPNISYICSRYYRAPELI  197 (364)
T ss_pred             ceeeccCCCceeEEEeccccCHHHH
Confidence            9999888888889999999999964

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.98  E-value=1.6e-31  Score=207.33  Aligned_cols=170  Identities=19%  Similarity=0.243  Sum_probs=144.1

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .|+..+.||+|+||.||+|... ++..||+|.+....   ......+.+|+.+++++.|++++++.+.+..       .+
T Consensus         1 ~f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~-------~~   73 (285)
T cd05631           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYET-------KD   73 (285)
T ss_pred             CceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEcc-------CC
Confidence            4778899999999999999975 79999999987542   2233457789999999999999999888754       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..++++||+++++|.+.+..... ..+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||++
T Consensus        74 ~~~lv~e~~~~g~L~~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~---~~iiH~dikp~Nill~~~~~~kl~Dfg~~  149 (285)
T cd05631          74 ALCLVLTIMNGGDLKFHIYNMGN-PGFDEQRAIFYAAELCCGLEDLQR---ERIVYRDLKPENILLDDRGHIRISDLGLA  149 (285)
T ss_pred             eEEEEEEecCCCcHHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCHHHEEECCCCCEEEeeCCCc
Confidence            79999999999999988764322 458899999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccccccccccCccccCCCCCC
Q 028629          181 LLAENAEKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       181 ~~~~~~~~~~~~~~~~~y~aPE~~~  205 (206)
                      .............++..|+|||...
T Consensus       150 ~~~~~~~~~~~~~g~~~y~aPE~~~  174 (285)
T cd05631         150 VQIPEGETVRGRVGTVGYMAPEVIN  174 (285)
T ss_pred             EEcCCCCeecCCCCCCCccCHhhhc
Confidence            8765544444567899999999753

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.98  E-value=1.2e-31  Score=214.61  Aligned_cols=148  Identities=18%  Similarity=0.304  Sum_probs=130.4

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ++|+..+.||+|+||.||+|... +++.||+|++....   ......+.+|+.++..++|++|+++++.+.+       .
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~-------~   73 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQD-------K   73 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEec-------C
Confidence            47899999999999999999976 78999999997532   2234567889999999999999999988765       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ..++++|||+++++|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+|||+++++.++|+|||+
T Consensus        74 ~~~~lv~E~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~lH~---~givHrDlKp~NILi~~~~~vkL~DFGl  147 (363)
T cd05628          74 LNLYLIMEFLPGGDMMTLLMKK---DTLTEEETQFYIAETVLAIDSIHQ---LGFIHRDIKPDNLLLDSKGHVKLSDFGL  147 (363)
T ss_pred             CeEEEEEcCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeEecCCCHHHeEECCCCCEEEeeccC
Confidence            6899999999999999998765   458899999999999999999999   7999999999999999999999999999


Q ss_pred             ccccc
Q 028629          180 PLLAE  184 (206)
Q Consensus       180 a~~~~  184 (206)
                      ++...
T Consensus       148 a~~~~  152 (363)
T cd05628         148 CTGLK  152 (363)
T ss_pred             ccccc
Confidence            87543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.9e-31  Score=211.14  Aligned_cols=166  Identities=19%  Similarity=0.311  Sum_probs=144.7

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ++|+..+.||+|+||.||+|... +++.||+|++....   ......+.+|+.++..++|+||+++++.+..       .
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~-------~   73 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQD-------D   73 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEc-------C
Confidence            46899999999999999999976 68999999997542   2334567889999999999999999988765       6


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +..+++|||+++++|.+++...   ..+++..+..++.|++.||.|||+   .+++||||+|+||++++++.+||+|||+
T Consensus        74 ~~~~lv~e~~~g~~L~~~l~~~---~~l~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kL~Dfg~  147 (333)
T cd05600          74 EYLYLAMEYVPGGDFRTLLNNL---GVLSEDHARFYMAEMFEAVDALHE---LGYIHRDLKPENFLIDASGHIKLTDFGL  147 (333)
T ss_pred             CEEEEEEeCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEECCCCCEEEEeCcC
Confidence            6899999999999999999765   458899999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +.....  ......++..|+|||..
T Consensus       148 a~~~~~--~~~~~~gt~~y~aPE~~  170 (333)
T cd05600         148 SKGIVT--YANSVVGSPDYMAPEVL  170 (333)
T ss_pred             Cccccc--ccCCcccCccccChhHh
Confidence            986654  23346789999999974

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.6e-31  Score=207.80  Aligned_cols=166  Identities=14%  Similarity=0.309  Sum_probs=143.3

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ++|+..+.||+|+||.||+|... +++.||+|++....   ....+.+.+|++++++++||||+++++.+.+       .
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------~   73 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHD-------Q   73 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhcc-------C
Confidence            46889999999999999999976 78999999997532   2334568889999999999999999987755       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...+++|||+++++|.+++...   ..+++.....++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||+
T Consensus        74 ~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~NIli~~~~~~kl~Dfg~  147 (291)
T cd05612          74 RFLYMLMEYVPGGELFSYLRNS---GRFSNSTGLFYASEIVCALEYLHS---KEIVYRDLKPENILLDKEGHIKLTDFGF  147 (291)
T ss_pred             CeEEEEEeCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHeEECCCCCEEEEecCc
Confidence            6899999999999999998765   458899999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +......  .....++..|+|||..
T Consensus       148 ~~~~~~~--~~~~~gt~~y~aPE~~  170 (291)
T cd05612         148 AKKLRDR--TWTLCGTPEYLAPEVI  170 (291)
T ss_pred             chhccCC--cccccCChhhcCHHHH
Confidence            9876542  2235788999999964

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.1e-31  Score=214.82  Aligned_cols=147  Identities=18%  Similarity=0.299  Sum_probs=130.7

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ++|+..+.||+|+||.||+|... +++.||+|++....   ......+.+|+.++..++|+||+++++.+.+       .
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~-------~   73 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQD-------E   73 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEc-------C
Confidence            47899999999999999999976 78999999997532   2334567789999999999999999998865       6


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +..+++|||+++++|.+++...   ..+++..+..++.|++.||.|||+   .+++||||||+|||++.++.++|+|||+
T Consensus        74 ~~~~lv~E~~~~g~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~  147 (364)
T cd05599          74 NYLYLIMEYLPGGDMMTLLMKK---DTFTEEETRFYIAETILAIDSIHK---LGYIHRDIKPDNLLLDAKGHIKLSDFGL  147 (364)
T ss_pred             CeEEEEECCCCCcHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeEECCCCCEEEeeccc
Confidence            7899999999999999998765   358999999999999999999999   7999999999999999999999999999


Q ss_pred             cccc
Q 028629          180 PLLA  183 (206)
Q Consensus       180 a~~~  183 (206)
                      +...
T Consensus       148 ~~~~  151 (364)
T cd05599         148 CTGL  151 (364)
T ss_pred             ceec
Confidence            8754

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.97  E-value=2.2e-31  Score=210.52  Aligned_cols=167  Identities=17%  Similarity=0.346  Sum_probs=144.8

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|...+.||+|+||.||+|... +++.||+|.+....   ....+.+.+|+.++++++|+||+++++.+..       
T Consensus        17 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------   89 (329)
T PTZ00263         17 LSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQD-------   89 (329)
T ss_pred             chheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEc-------
Confidence            467999999999999999999976 78999999997432   2334568889999999999999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+..+++|||+++++|.+++...   ..+++.....++.|++.||.|||+   .+++|+||||+||++++++.++|+|||
T Consensus        90 ~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp~NIll~~~~~~kl~Dfg  163 (329)
T PTZ00263         90 ENRVYFLLEFVVGGELFTHLRKA---GRFPNDVAKFYHAELVLAFEYLHS---KDIIYRDLKPENLLLDNKGHVKVTDFG  163 (329)
T ss_pred             CCEEEEEEcCCCCChHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHEEECCCCCEEEeecc
Confidence            56899999999999999998765   357888899999999999999999   799999999999999999999999999


Q ss_pred             ccccccccccccccccCccccCCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ++.......  ....++..|+|||..
T Consensus       164 ~~~~~~~~~--~~~~gt~~y~aPE~~  187 (329)
T PTZ00263        164 FAKKVPDRT--FTLCGTPEYLAPEVI  187 (329)
T ss_pred             CceEcCCCc--ceecCChhhcCHHHH
Confidence            998765432  235789999999964

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.97  E-value=4.1e-31  Score=208.47  Aligned_cols=162  Identities=18%  Similarity=0.281  Sum_probs=138.2

Q ss_pred             ceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEE
Q 028629           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI  105 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (206)
                      +.||+|+||.||++... +|+.||+|++....   ......+.+|+.++++++|+||+++.+.+..       .+..+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~-------~~~~~lv   73 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQT-------HDRLCFV   73 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEc-------CCEEEEE
Confidence            46899999999999975 79999999997542   2334567789999999999999999988765       6689999


Q ss_pred             EeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc-
Q 028629          106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE-  184 (206)
Q Consensus       106 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~-  184 (206)
                      |||+++++|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||+++... 
T Consensus        74 ~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~L~~lH~---~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~  147 (323)
T cd05571          74 MEYANGGELFFHLSRE---RVFSEDRARFYGAEIVSALGYLHS---CDVVYRDLKLENLMLDKDGHIKITDFGLCKEGIS  147 (323)
T ss_pred             EeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCHHHEEECCCCCEEEeeCCCCccccc
Confidence            9999999999988765   458899999999999999999999   799999999999999999999999999997542 


Q ss_pred             ccccccccccCccccCCCCC
Q 028629          185 NAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       185 ~~~~~~~~~~~~~y~aPE~~  204 (206)
                      .........|+..|+|||..
T Consensus       148 ~~~~~~~~~gt~~y~aPE~~  167 (323)
T cd05571         148 DGATMKTFCGTPEYLAPEVL  167 (323)
T ss_pred             CCCcccceecCccccChhhh
Confidence            22334446789999999975

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=6.6e-32  Score=213.54  Aligned_cols=172  Identities=19%  Similarity=0.311  Sum_probs=153.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ..+|..++.+|+|+||.+++++++ ++..+++|.+....  ....+...+|+.++++++||||+.+.+.|..      .+
T Consensus         3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~------~~   76 (426)
T KOG0589|consen    3 MDNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEE------DG   76 (426)
T ss_pred             cchhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhc------CC
Confidence            568999999999999999999987 78899999997664  3334467889999999999999999998876      23


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ..++|+|+|++||++.+.+....+ ..++++.++.|+.|++.|+.|||+   .+|.|||||+.||+++.++.++|+|||+
T Consensus        77 ~~l~Ivm~Y~eGg~l~~~i~~~k~-~~f~E~~i~~~~~Q~~~av~ylH~---~~iLHRDlK~~Nifltk~~~VkLgDfGl  152 (426)
T KOG0589|consen   77 QLLCIVMEYCEGGDLAQLIKEQKG-VLFPEERILKWFVQILLAVNYLHE---NRVLHRDLKCANIFLTKDKKVKLGDFGL  152 (426)
T ss_pred             ceEEEEEeecCCCCHHHHHHHHhh-ccccHHHHHHHHHHHHHHHHHHHh---hhhhcccchhhhhhccccCceeecchhh
Confidence            449999999999999999987654 679999999999999999999998   7999999999999999999999999999


Q ss_pred             cccccccc-cccccccCccccCCCCC
Q 028629          180 PLLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      |+..++.. ....+.||+.||+||-.
T Consensus       153 aK~l~~~~~~a~tvvGTp~YmcPEil  178 (426)
T KOG0589|consen  153 AKILNPEDSLASTVVGTPYYMCPEIL  178 (426)
T ss_pred             hhhcCCchhhhheecCCCcccCHHHh
Confidence            99998876 78889999999999964

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.97  E-value=2.6e-31  Score=213.11  Aligned_cols=169  Identities=15%  Similarity=0.260  Sum_probs=144.4

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ..++|+..+.||+|+||.||++... +++.+|+|.+....   ......+.+|+.+++.++||||+++++.+..      
T Consensus        41 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~------  114 (370)
T cd05621          41 KAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQD------  114 (370)
T ss_pred             CHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEc------
Confidence            3478999999999999999999976 68899999986432   2234557789999999999999999988765      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       +...+++|||+++++|.+++...    .+++.....++.|++.||.|||+   .+|+||||||+|||+++++.+||+||
T Consensus       115 -~~~~~lv~Ey~~gg~L~~~l~~~----~~~~~~~~~~~~qil~aL~~LH~---~~IvHrDLKp~NILl~~~~~~kL~DF  186 (370)
T cd05621         115 -DKYLYMVMEYMPGGDLVNLMSNY----DVPEKWAKFYTAEVVLALDAIHS---MGLIHRDVKPDNMLLDKHGHLKLADF  186 (370)
T ss_pred             -CCEEEEEEcCCCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHEEECCCCCEEEEec
Confidence             66899999999999999998653    47888899999999999999999   79999999999999999999999999


Q ss_pred             Cccccccccc--cccccccCccccCCCCC
Q 028629          178 NLPLLAENAE--KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~--~~~~~~~~~~y~aPE~~  204 (206)
                      |++.......  ......||..|+|||..
T Consensus       187 G~a~~~~~~~~~~~~~~~gt~~Y~aPE~~  215 (370)
T cd05621         187 GTCMKMDETGMVRCDTAVGTPDYISPEVL  215 (370)
T ss_pred             ccceecccCCceecccCCCCcccCCHHHH
Confidence            9998765332  23346789999999953

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=2.9e-31  Score=213.46  Aligned_cols=145  Identities=19%  Similarity=0.303  Sum_probs=128.7

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ++|...+.||+|+||.||++... +++.||+|++....   ....+.+.+|+++++.++|+||+++++++.+       .
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~-------~   73 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQD-------A   73 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEc-------C
Confidence            47899999999999999999976 79999999986432   2334567889999999999999999998865       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...+++|||+++++|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.++|+|||+
T Consensus        74 ~~~~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~ql~~aL~~LH~---~givHrDlkp~NIll~~~~~~kl~DfGl  147 (377)
T cd05629          74 QYLYLIMEFLPGGDLMTMLIKY---DTFSEDVTRFYMAECVLAIEAVHK---LGFIHRDIKPDNILIDRGGHIKLSDFGL  147 (377)
T ss_pred             CeeEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEECCCCCEEEeeccc
Confidence            6899999999999999998765   458889999999999999999999   7999999999999999999999999999


Q ss_pred             cc
Q 028629          180 PL  181 (206)
Q Consensus       180 a~  181 (206)
                      ++
T Consensus       148 a~  149 (377)
T cd05629         148 ST  149 (377)
T ss_pred             cc
Confidence            86

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.97  E-value=3.4e-31  Score=213.30  Aligned_cols=145  Identities=14%  Similarity=0.236  Sum_probs=128.7

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .|..++.||+|+||.||+|... ++..||+|++....   ......+.+|+.+++.++|+||+++++.+.+       .+
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~-------~~   74 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQD-------KD   74 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEec-------CC
Confidence            6889999999999999999975 78999999997542   2334568889999999999999999998865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      .++++|||+++++|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.++|+|||++
T Consensus        75 ~~~lv~E~~~gg~L~~~l~~~---~~~~e~~~~~~~~qi~~aL~~LH~---~givHrDlKp~Nili~~~~~~kL~DFGl~  148 (381)
T cd05626          75 NLYFVMDYIPGGDMMSLLIRM---EVFPEVLARFYIAELTLAIESVHK---MGFIHRDIKPDNILIDLDGHIKLTDFGLC  148 (381)
T ss_pred             EEEEEEecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCcHHHEEECCCCCEEEeeCcCC
Confidence            899999999999999998765   458889999999999999999999   79999999999999999999999999997


Q ss_pred             cc
Q 028629          181 LL  182 (206)
Q Consensus       181 ~~  182 (206)
                      ..
T Consensus       149 ~~  150 (381)
T cd05626         149 TG  150 (381)
T ss_pred             cc
Confidence            53

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.97  E-value=6.4e-31  Score=207.36  Aligned_cols=162  Identities=17%  Similarity=0.282  Sum_probs=137.7

Q ss_pred             ceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEE
Q 028629           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI  105 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (206)
                      +.||+|+||.||++... +|..||+|.+....   ......+.+|+.+++.++||||+++++.+..       .+..+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~-------~~~~~lv   73 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQT-------HDRLCFV   73 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEec-------CCEEEEE
Confidence            46899999999999975 79999999997542   2334566789999999999999999988765       5689999


Q ss_pred             EeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccc
Q 028629          106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       106 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                      |||+++++|..++...   ..+++..++.++.|++.||.|||+   .+++|+||||+|||+++++.++|+|||++.....
T Consensus        74 ~E~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~  147 (323)
T cd05595          74 MEYANGGELFFHLSRE---RVFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS  147 (323)
T ss_pred             EeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHEEEcCCCCEEecccHHhccccC
Confidence            9999999999888765   358899999999999999999999   7999999999999999999999999999875432


Q ss_pred             -cccccccccCccccCCCCC
Q 028629          186 -AEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       186 -~~~~~~~~~~~~y~aPE~~  204 (206)
                       ........++..|+|||..
T Consensus       148 ~~~~~~~~~gt~~y~aPE~~  167 (323)
T cd05595         148 DGATMKTFCGTPEYLAPEVL  167 (323)
T ss_pred             CCCccccccCCcCcCCcccc
Confidence             2233346789999999975

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1e-31  Score=218.06  Aligned_cols=170  Identities=17%  Similarity=0.289  Sum_probs=152.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ..-|+.++-||.|..|.|.+|++. +|+.+|||.+.+..   ......+.+|+.+|+.+.|||++.++++|.+       
T Consensus        11 iGpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~-------   83 (786)
T KOG0588|consen   11 IGPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWEN-------   83 (786)
T ss_pred             ccceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeecc-------
Confidence            345889999999999999999976 89999999997663   2223467889999999999999999999965       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ...+|++.||+++|.|.+.+-..   .++++.....++.||+.|+.|+|.   .+|+||||||+|+|++..+++||+|||
T Consensus        84 ~~~lylvlEyv~gGELFdylv~k---G~l~e~eaa~ff~QIi~gv~yCH~---~~icHRDLKpENlLLd~~~nIKIADFG  157 (786)
T KOG0588|consen   84 KQHLYLVLEYVPGGELFDYLVRK---GPLPEREAAHFFRQILDGVSYCHA---FNICHRDLKPENLLLDVKNNIKIADFG  157 (786)
T ss_pred             CceEEEEEEecCCchhHHHHHhh---CCCCCHHHHHHHHHHHHHHHHHhh---hcceeccCCchhhhhhcccCEeeeccc
Confidence            77899999999999999988776   458889999999999999999999   899999999999999999889999999


Q ss_pred             ccccccccccccccccCccccCCCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~~~  205 (206)
                      +|.+..++......+|.+.|.|||-.+
T Consensus       158 MAsLe~~gklLeTSCGSPHYA~PEIV~  184 (786)
T KOG0588|consen  158 MASLEVPGKLLETSCGSPHYAAPEIVS  184 (786)
T ss_pred             eeecccCCccccccCCCcccCCchhhc
Confidence            999998888888899999999999653

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.97  E-value=2e-31  Score=211.54  Aligned_cols=167  Identities=16%  Similarity=0.272  Sum_probs=143.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-C-CcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-N-GTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~-~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .++|...+.||+|+||.||+|... + +..||+|.+....   ....+.+.+|+.+++.++||||+++++++..      
T Consensus        29 ~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~------  102 (340)
T PTZ00426         29 YEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKD------  102 (340)
T ss_pred             hhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEe------
Confidence            467999999999999999999865 3 4689999986432   3344567889999999999999999998865      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       .+..+++|||+++++|.+++...   ..+++..+..++.|++.||.|||+   .+++||||||+|||++.++.++|+||
T Consensus       103 -~~~~~lv~Ey~~~g~L~~~i~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp~NILl~~~~~ikL~DF  175 (340)
T PTZ00426        103 -ESYLYLVLEFVIGGEFFTFLRRN---KRFPNDVGCFYAAQIVLIFEYLQS---LNIVYRDLKPENLLLDKDGFIKMTDF  175 (340)
T ss_pred             -CCEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEccCCCHHHEEECCCCCEEEecC
Confidence             56899999999999999999765   458899999999999999999999   79999999999999999999999999


Q ss_pred             CccccccccccccccccCccccCCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |++......  .....+++.|+|||..
T Consensus       176 G~a~~~~~~--~~~~~gt~~y~aPE~~  200 (340)
T PTZ00426        176 GFAKVVDTR--TYTLCGTPEYIAPEIL  200 (340)
T ss_pred             CCCeecCCC--cceecCChhhcCHHHH
Confidence            999876543  2346789999999964

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.97  E-value=4.9e-31  Score=212.05  Aligned_cols=145  Identities=14%  Similarity=0.249  Sum_probs=128.3

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ++|+..+.||+|+||.||+++.. +++.||+|.+....   ......+.+|+.+++.++|+||+++++.+..       .
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~-------~   73 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQD-------K   73 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEc-------C
Confidence            46899999999999999999976 78999999986432   2234567889999999999999999988765       6


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +.++++|||+++++|.+++...   ..+++.....++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||+
T Consensus        74 ~~~~lv~E~~~~g~L~~~i~~~---~~~~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nill~~~~~ikL~DFG~  147 (376)
T cd05598          74 DNLYFVMDYIPGGDMMSLLIRL---GIFEEDLARFYIAELTCAIESVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGL  147 (376)
T ss_pred             CEEEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCHHHEEECCCCCEEEEeCCC
Confidence            7899999999999999998765   457888899999999999999999   7999999999999999999999999999


Q ss_pred             cc
Q 028629          180 PL  181 (206)
Q Consensus       180 a~  181 (206)
                      |.
T Consensus       148 a~  149 (376)
T cd05598         148 CT  149 (376)
T ss_pred             Cc
Confidence            75

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.97  E-value=4.7e-31  Score=212.53  Aligned_cols=144  Identities=15%  Similarity=0.261  Sum_probs=127.8

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      +|...+.||+|+||.||+|+.. ++..||+|.+....   ......+.+|+.++++++|+||+++++.+.+       .+
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~-------~~   74 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQD-------KD   74 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEe-------CC
Confidence            6889999999999999999975 78899999987432   2234567889999999999999999998865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      .++++|||+++++|.+++...   ..+++.....++.|++.||.|||+   .+|+||||||+|||++.++.++|+|||++
T Consensus        75 ~~~lv~E~~~gg~L~~~l~~~---~~~~e~~~~~~~~qi~~al~~lH~---~~ivHrDlKp~NILl~~~g~~kL~DFGla  148 (382)
T cd05625          75 NLYFVMDYIPGGDMMSLLIRM---GIFPEDLARFYIAELTCAVESVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGLC  148 (382)
T ss_pred             EEEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEEeECCCC
Confidence            899999999999999988765   357888999999999999999999   79999999999999999999999999997


Q ss_pred             c
Q 028629          181 L  181 (206)
Q Consensus       181 ~  181 (206)
                      .
T Consensus       149 ~  149 (382)
T cd05625         149 T  149 (382)
T ss_pred             c
Confidence            5

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.5e-31  Score=203.76  Aligned_cols=177  Identities=19%  Similarity=0.291  Sum_probs=150.0

Q ss_pred             HHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEee--cCCCccHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           19 LEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLK--MKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        19 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~--~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      .......|...+.||.|++|.|+.+... +|+.||||.+.  .+....+++..+|+.+|+.++|+||+.+.+++....  
T Consensus        17 ~~~i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~--   94 (359)
T KOG0660|consen   17 LFEIPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPS--   94 (359)
T ss_pred             EEeccceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeeccccc--
Confidence            3345667887899999999999999976 89999999997  456677888999999999999999999999876511  


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                      .+.....|+|+|+++ .+|.+.++.+   +.++......+..|++.||.|+|+   .+++||||||+|++++.+..+||+
T Consensus        95 ~~~f~DvYiV~elMe-tDL~~iik~~---~~L~d~H~q~f~YQiLrgLKyiHS---AnViHRDLKPsNll~n~~c~lKI~  167 (359)
T KOG0660|consen   95 RDKFNDVYLVFELME-TDLHQIIKSQ---QDLTDDHAQYFLYQILRGLKYIHS---ANVIHRDLKPSNLLLNADCDLKIC  167 (359)
T ss_pred             ccccceeEEehhHHh-hHHHHHHHcC---ccccHHHHHHHHHHHHHhcchhhc---ccccccccchhheeeccCCCEEec
Confidence            122467999999994 4999999886   559999999999999999999999   899999999999999999999999


Q ss_pred             cCCcccccccc---ccccccccCccccCCCCC
Q 028629          176 SYNLPLLAENA---EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       176 df~~a~~~~~~---~~~~~~~~~~~y~aPE~~  204 (206)
                      |||+|+...+.   ..-..+.-|.||+|||-.
T Consensus       168 DFGLAR~~~~~~~~~~mTeYVaTRWYRAPEll  199 (359)
T KOG0660|consen  168 DFGLARYLDKFFEDGFMTEYVATRWYRAPELL  199 (359)
T ss_pred             cccceeeccccCcccchhcceeeeeecCHHHH
Confidence            99999988642   222336788999999964

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.97  E-value=8e-31  Score=208.79  Aligned_cols=171  Identities=17%  Similarity=0.315  Sum_probs=153.1

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc---cHHHHHHHHHHHhccC-CCceeeecccccccccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH---STRNFMHHIELISKLR-HCHLVSALGHCFECYFD   95 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~   95 (206)
                      .....|...+.||.|.||.||+|..+ +|+.+|+|.+.+....   ....+.+|+.+|+++. ||||+.+.+++.+    
T Consensus        32 ~~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~----  107 (382)
T KOG0032|consen   32 DIKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFED----  107 (382)
T ss_pred             cccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEc----
Confidence            44567999999999999999999987 6999999999876543   3458999999999998 9999999999966    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC----Cc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN----LV  171 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~----~~  171 (206)
                         ....++|||++.||.|.+.+...    .+++.....++.|++.++.|||+   .+++|||+||+|+|+...    +.
T Consensus       108 ---~~~~~lvmEL~~GGeLfd~i~~~----~~sE~da~~~~~~il~av~~lH~---~gvvHrDlKpEN~L~~~~~~~~~~  177 (382)
T KOG0032|consen  108 ---PDSVYLVMELCEGGELFDRIVKK----HYSERDAAGIIRQILEAVKYLHS---LGVVHRDLKPENLLLASKDEGSGR  177 (382)
T ss_pred             ---CCeEEEEEEecCCchHHHHHHHc----cCCHHHHHHHHHHHHHHHHHHHh---CCceeccCCHHHeeeccccCCCCc
Confidence               66899999999999999998875    28999999999999999999999   899999999999999843    47


Q ss_pred             eeEccCCccccccccccccccccCccccCCCCCC
Q 028629          172 AKISSYNLPLLAENAEKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       172 ~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~~  205 (206)
                      ++++|||++............+||++|+|||...
T Consensus       178 ik~~DFGla~~~~~~~~~~~~~Gtp~y~APEvl~  211 (382)
T KOG0032|consen  178 IKLIDFGLAKFIKPGERLHTIVGTPEYVAPEVLG  211 (382)
T ss_pred             EEEeeCCCceEccCCceEeeecCCccccCchhhc
Confidence            9999999999998877888899999999999754

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.97  E-value=1.3e-30  Score=206.00  Aligned_cols=162  Identities=19%  Similarity=0.296  Sum_probs=137.9

Q ss_pred             ceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEE
Q 028629           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI  105 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (206)
                      +.||+|+||.||++... ++..||+|.+....   ......+.+|+.+++.++|+||+++.+.+..       .+..++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------~~~~~lv   73 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQT-------KDRLCFV   73 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEc-------CCEEEEE
Confidence            46899999999999976 78999999997542   2334567889999999999999999887754       6689999


Q ss_pred             EeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccc
Q 028629          106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       106 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                      |||+++++|...+...   ..+++..+..++.|++.||.|||+   .+|+|+||||+|||+++++.+||+|||+++....
T Consensus        74 ~Ey~~~g~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~  147 (328)
T cd05593          74 MEYVNGGELFFHLSRE---RVFSEDRTRFYGAEIVSALDYLHS---GKIVYRDLKLENLMLDKDGHIKITDFGLCKEGIT  147 (328)
T ss_pred             EeCCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeEecccCHHHeEECCCCcEEEecCcCCccCCC
Confidence            9999999999888765   458899999999999999999999   7999999999999999999999999999976432


Q ss_pred             -cccccccccCccccCCCCC
Q 028629          186 -AEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       186 -~~~~~~~~~~~~y~aPE~~  204 (206)
                       ........++..|+|||..
T Consensus       148 ~~~~~~~~~gt~~y~aPE~~  167 (328)
T cd05593         148 DAATMKTFCGTPEYLAPEVL  167 (328)
T ss_pred             cccccccccCCcCccChhhh
Confidence             2233346789999999974

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.97  E-value=1.4e-31  Score=218.49  Aligned_cols=179  Identities=18%  Similarity=0.323  Sum_probs=152.6

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ..|...+.||+|+||.||+|+.+ +|+.||+|++.... ....+....|+++|++++|+||++++++=... +.......
T Consensus        13 y~W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~-~~~~~~~~   91 (732)
T KOG4250|consen   13 YLWEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETK-FLGLVTRL   91 (732)
T ss_pred             cceeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCcc-ccCccccc
Confidence            45778899999999999999976 89999999997543 45567789999999999999999998864331 11222445


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec--CCC--ceeEccC
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD--QNL--VAKISSY  177 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~--~~~--~~kl~df  177 (206)
                      ..++||||++|+|...+..-.+.-.+++..++.+..+++.||.|||+   .+|+||||||.||++-  ++|  --||+||
T Consensus        92 ~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrE---n~IvHRDlKP~NIvl~~Gedgq~IyKLtDf  168 (732)
T KOG4250|consen   92 PVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRE---NGIVHRDLKPGNIVLQIGEDGQSIYKLTDF  168 (732)
T ss_pred             ceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHH---cCceeccCCCCcEEEeecCCCceEEeeecc
Confidence            78999999999999999876655679999999999999999999999   5999999999999996  334  3499999


Q ss_pred             CccccccccccccccccCccccCCCCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTNSAR  206 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~~~~  206 (206)
                      |.|+-.+.++......||..|++||.+.|
T Consensus       169 G~Arel~d~s~~~S~vGT~~YLhPel~E~  197 (732)
T KOG4250|consen  169 GAARELDDNSLFTSLVGTEEYLHPELYER  197 (732)
T ss_pred             cccccCCCCCeeeeecCchhhcChHHHhh
Confidence            99999999999999999999999997653

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.97  E-value=5.5e-31  Score=208.83  Aligned_cols=175  Identities=21%  Similarity=0.359  Sum_probs=140.7

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCC-CccHHHHHHHHHHHhcc-CCCceeeeccccccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFEC   92 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~   92 (206)
                      ...++|+..+.||+|+||.||+|...      ++..||+|.+.... ....+.+.+|+.++.++ +|+||+++++++.. 
T Consensus         4 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~-   82 (338)
T cd05102           4 FPRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTK-   82 (338)
T ss_pred             cchhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecC-
Confidence            34578999999999999999999742      35689999987443 23345788999999999 89999999998753 


Q ss_pred             cccCCCCceEEEEEeecCCCCHHHHHhcCCC-------------------------------------------------
Q 028629           93 YFDDSSVSRIFLIFEYVPNGTLRSWISEGHA-------------------------------------------------  123 (206)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-------------------------------------------------  123 (206)
                           ....++++|||+++|+|.+++.....                                                 
T Consensus        83 -----~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T cd05102          83 -----PNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGST  157 (338)
T ss_pred             -----CCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCccc
Confidence                 23458999999999999998864211                                                 


Q ss_pred             ----------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccccc---ccc
Q 028629          124 ----------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVG  190 (206)
Q Consensus       124 ----------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~  190 (206)
                                ..++++..+..++.|++.||.|||+   .+|+||||||+||++++++.++|+|||+++......   ...
T Consensus       158 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~  234 (338)
T cd05102         158 NPPQETDDLWKSPLTMEDLICYSFQVARGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKG  234 (338)
T ss_pred             ccchhccccccCCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCccceEEEcCCCcEEEeecccccccccCcchhccc
Confidence                      1347788899999999999999999   799999999999999999999999999998654321   222


Q ss_pred             ccccCccccCCCCC
Q 028629          191 HVTPYSGSINPTNS  204 (206)
Q Consensus       191 ~~~~~~~y~aPE~~  204 (206)
                      ...++..|+|||..
T Consensus       235 ~~~~~~~y~aPE~~  248 (338)
T cd05102         235 SARLPLKWMAPESI  248 (338)
T ss_pred             CCCCCccccCcHHh
Confidence            33455789999964

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.97  E-value=1.1e-31  Score=215.87  Aligned_cols=180  Identities=21%  Similarity=0.378  Sum_probs=152.2

Q ss_pred             ccceeCHHHHHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeecc
Q 028629           10 AYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALG   87 (206)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~   87 (206)
                      .-..++..+|....+....++.||+|.||+||+|.|.+  .||||++....  ....+.|.+|+..+++-+|.||+.+.|
T Consensus       378 r~~s~s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG  455 (678)
T KOG0193|consen  378 RQASDSLEEWEIPPEEVLLGERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMG  455 (678)
T ss_pred             ccCCccccccccCHHHhhccceeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeeh
Confidence            33455567888888999999999999999999999863  59999997654  455678999999999999999999999


Q ss_pred             ccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec
Q 028629           88 HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD  167 (206)
Q Consensus        88 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~  167 (206)
                      +|..        ..+.||+.+|+|.+|..++....  ..++..+..+||+||++||.|||.   .+|+|+|||..||++.
T Consensus       456 ~~~~--------p~~AIiTqwCeGsSLY~hlHv~e--tkfdm~~~idIAqQiaqGM~YLHA---K~IIHrDLKSnNIFl~  522 (678)
T KOG0193|consen  456 ACMN--------PPLAIITQWCEGSSLYTHLHVQE--TKFDMNTTIDIAQQIAQGMDYLHA---KNIIHRDLKSNNIFLH  522 (678)
T ss_pred             hhcC--------CceeeeehhccCchhhhhccchh--hhhhHHHHHHHHHHHHHhhhhhhh---hhhhhhhccccceEEc
Confidence            9975        33599999999999999987654  458888999999999999999999   8999999999999999


Q ss_pred             CCCceeEccCCccccccccc---cccccccCccccCCCCC
Q 028629          168 QNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       168 ~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      +++.|||+|||++..-....   ....-.+...|||||.+
T Consensus       523 ~~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvI  562 (678)
T KOG0193|consen  523 EDLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVI  562 (678)
T ss_pred             cCCcEEEecccceeeeeeeccccccCCCccchhhhcHHHH
Confidence            99999999999997655432   22223455569999964

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=9.2e-31  Score=208.37  Aligned_cols=168  Identities=16%  Similarity=0.289  Sum_probs=145.6

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ++|...+.||+|+||.||+|... +++.||+|++....   ......+..|+.++..+.|+||+++++.+..       .
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-------~   73 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQD-------E   73 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheec-------C
Confidence            47899999999999999999976 79999999997542   2445678889999999999999999988765       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +..+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||+
T Consensus        74 ~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH~---~giiH~Dlkp~NIll~~~~~~kL~Dfg~  147 (350)
T cd05573          74 EHLYLVMEYMPGGDLMNLLIRK---DVFPEETARFYIAELVLALDSVHK---LGFIHRDIKPDNILIDADGHIKLADFGL  147 (350)
T ss_pred             CeEEEEEcCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEeecCCC
Confidence            6899999999999999999775   458899999999999999999999   8999999999999999999999999999


Q ss_pred             cccccccc------------------------------cccccccCccccCCCCC
Q 028629          180 PLLAENAE------------------------------KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~------------------------------~~~~~~~~~~y~aPE~~  204 (206)
                      +.......                              ......++..|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  202 (350)
T cd05573         148 CKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVL  202 (350)
T ss_pred             CccCcccCcccccccccccccccccccccccccccccccccccccCccccCHHHH
Confidence            98665432                              23345788999999964

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=9.6e-31  Score=204.04  Aligned_cols=175  Identities=15%  Similarity=0.293  Sum_probs=150.9

Q ss_pred             HHHHHhcCCcccceeccCcceeEEEEEE-eCCcEEEEEEeecCCCc-cHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           18 ELEEATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        18 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~-~~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      ++.-....|...+.||.|..+.||+|+. +.++.||||.++.++.. ..+.+.+|+..|+.++||||++++..|..    
T Consensus        20 ~~p~n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv----   95 (516)
T KOG0582|consen   20 EFPLNAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVV----   95 (516)
T ss_pred             cCCCCccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEe----
Confidence            3444567899999999999999999995 47899999999887633 35889999999999999999999998876    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                         +..+|+||.++.+|++.+++...-. ..+++..+..+.+++++||.|||+   .|.+|||+|+.||||+.+|.++|+
T Consensus        96 ---~~~LWvVmpfMa~GS~ldIik~~~~-~Gl~E~~Ia~iLre~LkaL~YLH~---~G~IHRdvKAgnILi~~dG~VkLa  168 (516)
T KOG0582|consen   96 ---DSELWVVMPFMAGGSLLDIIKTYYP-DGLEEASIATILREVLKALDYLHQ---NGHIHRDVKAGNILIDSDGTVKLA  168 (516)
T ss_pred             ---cceeEEeehhhcCCcHHHHHHHHcc-ccccHHHHHHHHHHHHHHHHHHHh---cCceecccccccEEEcCCCcEEEc
Confidence               6789999999999999999976433 459999999999999999999999   799999999999999999999999


Q ss_pred             cCCccccccccc-cc----cccccCccccCCCC
Q 028629          176 SYNLPLLAENAE-KV----GHVTPYSGSINPTN  203 (206)
Q Consensus       176 df~~a~~~~~~~-~~----~~~~~~~~y~aPE~  203 (206)
                      |||.+..+-... ..    +...+++.|||||.
T Consensus       169 dFgvsa~l~~~G~R~~~rf~tfvgtp~wmAPEv  201 (516)
T KOG0582|consen  169 DFGVSASLFDSGDRQVTRFNTFVGTPCWMAPEV  201 (516)
T ss_pred             CceeeeeecccCceeeEeeccccCcccccChHH
Confidence            999886543322 11    44589999999997

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.97  E-value=9.5e-31  Score=209.98  Aligned_cols=175  Identities=15%  Similarity=0.249  Sum_probs=147.7

Q ss_pred             HHHHHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeecccccc
Q 028629           16 LEELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFE   91 (206)
Q Consensus        16 ~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   91 (206)
                      +.+.....++|+..+.||+|+||.||++... ++..+|+|++....   ......+.+|+.+++.++||||+++++.+..
T Consensus        35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~  114 (371)
T cd05622          35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  114 (371)
T ss_pred             HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc
Confidence            3445555689999999999999999999976 78899999986432   2233457789999999999999999988765


Q ss_pred             ccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc
Q 028629           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV  171 (206)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~  171 (206)
                             ....+++|||+++++|.+++...    .+++..+..++.|++.||.|||+   .+|+||||||+||++++++.
T Consensus       115 -------~~~~~lv~Ey~~gg~L~~~~~~~----~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp~NIll~~~~~  180 (371)
T cd05622         115 -------DRYLYMVMEYMPGGDLVNLMSNY----DVPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGH  180 (371)
T ss_pred             -------CCEEEEEEcCCCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHH---CCEEeCCCCHHHEEECCCCC
Confidence                   56899999999999999988753    37888889999999999999999   79999999999999999999


Q ss_pred             eeEccCCccccccccc--cccccccCccccCCCCC
Q 028629          172 AKISSYNLPLLAENAE--KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       172 ~kl~df~~a~~~~~~~--~~~~~~~~~~y~aPE~~  204 (206)
                      ++|+|||++.......  ......||+.|+|||..
T Consensus       181 ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l  215 (371)
T cd05622         181 LKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVL  215 (371)
T ss_pred             EEEEeCCceeEcCcCCcccccCcccCccccCHHHH
Confidence            9999999998765332  23346789999999964

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.97  E-value=2.5e-30  Score=200.83  Aligned_cols=169  Identities=15%  Similarity=0.309  Sum_probs=141.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ..+|...+.||.|+||.||+|... ++..||+|.++... ......+.+|+.++++++|+||+++++++..       ..
T Consensus         4 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-------~~   76 (288)
T cd07871           4 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHT-------ER   76 (288)
T ss_pred             cccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcC-------CC
Confidence            467999999999999999999976 78999999987543 2234567789999999999999999998754       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..++++||+++ +|.+++....  ..+++..+..++.|++.||.|||+   .+|+||||||+||++++++.+||+|||++
T Consensus        77 ~~~lv~e~~~~-~l~~~l~~~~--~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~DfG~~  150 (288)
T cd07871          77 CLTLVFEYLDS-DLKQYLDNCG--NLMSMHNVKIFMFQLLRGLSYCHK---RKILHRDLKPQNLLINEKGELKLADFGLA  150 (288)
T ss_pred             eEEEEEeCCCc-CHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEECcCcce
Confidence            79999999975 8988886543  357889999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccc-cccccccCccccCCCCC
Q 028629          181 LLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      +...... ......++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~y~aPE~~  175 (288)
T cd07871         151 RAKSVPTKTYSNEVVTLWYRPPDVL  175 (288)
T ss_pred             eeccCCCccccCceecccccChHHh
Confidence            7654322 22335678899999964

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.6e-30  Score=204.22  Aligned_cols=160  Identities=14%  Similarity=0.227  Sum_probs=136.7

Q ss_pred             eccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEEEe
Q 028629           32 MGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE  107 (206)
Q Consensus        32 lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e  107 (206)
                      ||+|+||.||+|... +++.||+|.+....   ......+..|+.++.+++|+||+++++.+..       .+..+++||
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~~~~lv~e   73 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQS-------PEKLYLVLA   73 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEec-------CCeEEEEEc
Confidence            689999999999976 68899999987432   2334567889999999999999999888754       568999999


Q ss_pred             ecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccc-c
Q 028629          108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN-A  186 (206)
Q Consensus       108 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~-~  186 (206)
                      |+++++|.+++...   ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++.... .
T Consensus        74 ~~~~g~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~  147 (312)
T cd05585          74 FINGGELFHHLQRE---GRFDLSRARFYTAELLCALENLHK---FNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDD  147 (312)
T ss_pred             CCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCHHHeEECCCCcEEEEECcccccCccCC
Confidence            99999999998765   358899999999999999999999   7999999999999999999999999999986432 2


Q ss_pred             ccccccccCccccCCCCC
Q 028629          187 EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       187 ~~~~~~~~~~~y~aPE~~  204 (206)
                      .......++..|+|||..
T Consensus       148 ~~~~~~~gt~~y~aPE~~  165 (312)
T cd05585         148 DKTNTFCGTPEYLAPELL  165 (312)
T ss_pred             CccccccCCcccCCHHHH
Confidence            334446789999999964

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=6.3e-31  Score=214.11  Aligned_cols=169  Identities=24%  Similarity=0.370  Sum_probs=148.9

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccC-CCceeeeccccccccccC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDD   96 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~   96 (206)
                      ...+|...++||+|.||.|+++..+ +++.+|||++++..   ....+..+.|-++++... ||.++.++..|.+     
T Consensus       366 ~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT-----  440 (694)
T KOG0694|consen  366 TLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQT-----  440 (694)
T ss_pred             cccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeeccccccc-----
Confidence            3568999999999999999999987 78899999998764   555677888888888885 9999999998865     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                        .+.+|+||||+.||++..++..    ..+++.....|+..++.||.|||+   .+|++||||.+|||+|.+|.+||+|
T Consensus       441 --~~~l~fvmey~~Ggdm~~~~~~----~~F~e~rarfyaAev~l~L~fLH~---~~IIYRDlKLdNiLLD~eGh~kiAD  511 (694)
T KOG0694|consen  441 --KEHLFFVMEYVAGGDLMHHIHT----DVFSEPRARFYAAEVVLGLQFLHE---NGIIYRDLKLDNLLLDTEGHVKIAD  511 (694)
T ss_pred             --CCeEEEEEEecCCCcEEEEEec----ccccHHHHHHHHHHHHHHHHHHHh---cCceeeecchhheEEcccCcEEecc
Confidence              7899999999999996665554    358999999999999999999999   6999999999999999999999999


Q ss_pred             CCcccccc-ccccccccccCccccCCCCC
Q 028629          177 YNLPLLAE-NAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~-~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ||+++..- ......+.+||+.|||||-.
T Consensus       512 FGlcKe~m~~g~~TsTfCGTpey~aPEil  540 (694)
T KOG0694|consen  512 FGLCKEGMGQGDRTSTFCGTPEFLAPEVL  540 (694)
T ss_pred             cccccccCCCCCccccccCChhhcChhhh
Confidence            99998654 55688889999999999953

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.97  E-value=1.4e-30  Score=206.02  Aligned_cols=169  Identities=15%  Similarity=0.192  Sum_probs=143.2

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ++|...+.||+|+||.||++... +++.||+|.+....   ......+.+|..++..++|++|+++++.+..       .
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~-------~   73 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQD-------E   73 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEc-------C
Confidence            47899999999999999999976 78899999986421   2334457789999999999999999988765       6


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +..+++|||+++++|.+++....  ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||+
T Consensus        74 ~~~~lv~Ey~~gg~L~~~l~~~~--~~l~~~~~~~~~~qi~~~L~~lH~---~~iiHrDlkp~Nill~~~~~~kl~DfG~  148 (331)
T cd05624          74 NYLYLVMDYYVGGDLLTLLSKFE--DRLPEDMARFYIAEMVLAIHSIHQ---LHYVHRDIKPDNVLLDMNGHIRLADFGS  148 (331)
T ss_pred             CEEEEEEeCCCCCcHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCchHHEEEcCCCCEEEEeccc
Confidence            78999999999999999997632  357889999999999999999999   8999999999999999999999999999


Q ss_pred             cccccccc--cccccccCccccCCCCC
Q 028629          180 PLLAENAE--KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~--~~~~~~~~~~y~aPE~~  204 (206)
                      +.......  ......++..|+|||..
T Consensus       149 a~~~~~~~~~~~~~~~gt~~y~aPE~~  175 (331)
T cd05624         149 CLKMNQDGTVQSSVAVGTPDYISPEIL  175 (331)
T ss_pred             eeeccCCCceeeccccCCcccCCHHHH
Confidence            98665432  22235689999999954

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=2.2e-30  Score=205.01  Aligned_cols=169  Identities=17%  Similarity=0.226  Sum_probs=143.2

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC---CCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ++|+..+.||+|+||.||++... +++.||+|.+...   .....+.+.+|..++..++|+||+++++.+..       .
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-------~   73 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQD-------E   73 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEec-------C
Confidence            47899999999999999999976 6899999999742   22334567889999999999999999988765       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +..+++|||+++++|.+++....  ..+++..+..++.|++.||.|||+   .+++||||||+|||++.++.++|+|||+
T Consensus        74 ~~~~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~  148 (331)
T cd05597          74 NNLYLVMDYYVGGDLLTLLSKFE--DRLPEDMARFYLAEMVLAIDSVHQ---LGYVHRDIKPDNVLLDKNGHIRLADFGS  148 (331)
T ss_pred             CeEEEEEecCCCCcHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh---CCeEECCCCHHHEEECCCCCEEEEECCc
Confidence            68999999999999999987532  358899999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccc--cccccccCccccCCCCC
Q 028629          180 PLLAENAE--KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~--~~~~~~~~~~y~aPE~~  204 (206)
                      +.......  ......++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~~gt~~y~aPE~~  175 (331)
T cd05597         149 CLRLLADGTVQSNVAVGTPDYISPEIL  175 (331)
T ss_pred             eeecCCCCCccccceeccccccCHHHH
Confidence            87654332  22334689999999964

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.97  E-value=9.7e-31  Score=209.89  Aligned_cols=168  Identities=16%  Similarity=0.255  Sum_probs=143.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|...+.||+|+||.||++... ++..||+|.+....   ......+.+|+.+++.++|+||+++++.+..       
T Consensus        42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~-------  114 (370)
T cd05596          42 AEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQD-------  114 (370)
T ss_pred             HHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEec-------
Confidence            467999999999999999999976 78999999996432   2334457789999999999999999987755       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ....+++|||+++++|.+++...    .+++.....++.|++.||.|||+   .+|+||||||+|||+++++.++|+|||
T Consensus       115 ~~~~~lv~Ey~~gg~L~~~l~~~----~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp~NILl~~~~~~kL~DfG  187 (370)
T cd05596         115 DKYLYMVMEYMPGGDLVNLMSNY----DIPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGHLKLADFG  187 (370)
T ss_pred             CCEEEEEEcCCCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEcCCCCEEEEecc
Confidence            56899999999999999988753    37788888999999999999999   799999999999999999999999999


Q ss_pred             ccccccccc--cccccccCccccCCCCC
Q 028629          179 LPLLAENAE--KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~--~~~~~~~~~~y~aPE~~  204 (206)
                      ++.......  ......|++.|+|||..
T Consensus       188 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~  215 (370)
T cd05596         188 TCMKMDANGMVRCDTAVGTPDYISPEVL  215 (370)
T ss_pred             ceeeccCCCcccCCCCCCCcCeECHHHh
Confidence            998765432  22345789999999953

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.97  E-value=2e-30  Score=207.39  Aligned_cols=147  Identities=17%  Similarity=0.309  Sum_probs=129.7

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ++|+..+.||+|+||.||++... +++.||+|.+....   ......+.+|+.++..++|++++++++.+..       .
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~-------~   73 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQD-------K   73 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEc-------C
Confidence            46889999999999999999976 78999999997432   3334567889999999999999999988755       6


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +..+++|||+++++|.+++...   ..+++.....++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||+
T Consensus        74 ~~~~lv~E~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~~L~~lH~---~givHrDLkp~NIli~~~~~vkL~DfG~  147 (360)
T cd05627          74 RNLYLIMEFLPGGDMMTLLMKK---DTLSEEATQFYIAETVLAIDAIHQ---LGFIHRDIKPDNLLLDAKGHVKLSDFGL  147 (360)
T ss_pred             CEEEEEEeCCCCccHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEccCCCHHHEEECCCCCEEEeeccC
Confidence            6899999999999999998765   458899999999999999999999   8999999999999999999999999999


Q ss_pred             cccc
Q 028629          180 PLLA  183 (206)
Q Consensus       180 a~~~  183 (206)
                      +...
T Consensus       148 ~~~~  151 (360)
T cd05627         148 CTGL  151 (360)
T ss_pred             Cccc
Confidence            8754

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.97  E-value=2.4e-30  Score=204.59  Aligned_cols=169  Identities=17%  Similarity=0.233  Sum_probs=144.1

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ++|...+.||+|+||.||++... +++.||+|.+....   ....+.+.+|+.+++.++|+||+++.+.+..       .
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~-------~   73 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQD-------K   73 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEec-------C
Confidence            47899999999999999999976 79999999997542   2234567889999999999999999887754       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +..+++|||+++++|.+++....  ..+++..+..++.|++.||.|||+   .+++||||+|+||+++.++.++|+|||+
T Consensus        74 ~~~~lv~e~~~~~~L~~~l~~~~--~~l~~~~~~~~~~qi~~aL~~lH~---~~i~H~Dlkp~NIll~~~~~~kL~Dfg~  148 (330)
T cd05601          74 DNLYLVMEYQPGGDLLSLLNRYE--DQFDEDMAQFYLAELVLAIHSVHQ---MGYVHRDIKPENVLIDRTGHIKLADFGS  148 (330)
T ss_pred             CeEEEEECCCCCCCHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeEcccCchHheEECCCCCEEeccCCC
Confidence            67999999999999999987653  358899999999999999999999   7999999999999999999999999999


Q ss_pred             ccccccccc--ccccccCccccCCCCC
Q 028629          180 PLLAENAEK--VGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~--~~~~~~~~~y~aPE~~  204 (206)
                      +........  .....++..|+|||..
T Consensus       149 a~~~~~~~~~~~~~~~gt~~y~aPE~~  175 (330)
T cd05601         149 AARLTANKMVNSKLPVGTPDYIAPEVL  175 (330)
T ss_pred             CeECCCCCceeeecccCCccccCHHHh
Confidence            987654332  2234688899999964

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.97  E-value=4.2e-30  Score=202.72  Aligned_cols=164  Identities=18%  Similarity=0.268  Sum_probs=137.1

Q ss_pred             cceeccCcceeEEEEEEe----CCcEEEEEEeecCC----CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           29 SAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK----SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~----~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .+.||+|+||.||++...    +++.||+|+++...    ......+.+|+.+++.++|+||+++++.+..       .+
T Consensus         1 ~~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~-------~~   73 (323)
T cd05584           1 LKVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQT-------GG   73 (323)
T ss_pred             CceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEec-------CC
Confidence            367999999999999852    57899999987432    2233467789999999999999999988765       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..+++|||+++++|.+++...   ..+.+.....++.|++.||.|||+   .+++|+||||+||++++++.++|+|||++
T Consensus        74 ~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~  147 (323)
T cd05584          74 KLYLILEYLSGGELFMHLERE---GIFMEDTACFYLSEISLALEHLHQ---QGIIYRDLKPENILLDAQGHVKLTDFGLC  147 (323)
T ss_pred             eEEEEEeCCCCchHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCCEEEeeCcCC
Confidence            799999999999999998765   457888889999999999999999   79999999999999999999999999998


Q ss_pred             cccc-ccccccccccCccccCCCCCC
Q 028629          181 LLAE-NAEKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       181 ~~~~-~~~~~~~~~~~~~y~aPE~~~  205 (206)
                      +... .........++..|+|||...
T Consensus       148 ~~~~~~~~~~~~~~gt~~y~aPE~~~  173 (323)
T cd05584         148 KESIHEGTVTHTFCGTIEYMAPEILM  173 (323)
T ss_pred             eecccCCCcccccCCCccccChhhcc
Confidence            7432 223334467899999999753

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.97  E-value=4.1e-30  Score=202.94  Aligned_cols=163  Identities=17%  Similarity=0.279  Sum_probs=136.7

Q ss_pred             ceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEE
Q 028629           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI  105 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (206)
                      +.||+|+||.||++... ++..||+|.+....   ......+.+|++++..++|+||+++.+.+..       .+..++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~-------~~~~~lv   73 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQT-------HDRLCFV   73 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEc-------CCEEEEE
Confidence            46899999999999975 79999999997542   2234566789999999999999999887755       5689999


Q ss_pred             EeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc-
Q 028629          106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE-  184 (206)
Q Consensus       106 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~-  184 (206)
                      |||+++++|...+...   ..+++..+..++.|++.||.|||+.  .+++||||||+|||+++++.++|+|||+++... 
T Consensus        74 ~E~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~lH~~--~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~  148 (325)
T cd05594          74 MEYANGGELFFHLSRE---RVFSEDRARFYGAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIK  148 (325)
T ss_pred             EeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhc--CCEEecCCCCCeEEECCCCCEEEecCCCCeecCC
Confidence            9999999999888765   4588999999999999999999962  599999999999999999999999999987533 


Q ss_pred             ccccccccccCccccCCCCC
Q 028629          185 NAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       185 ~~~~~~~~~~~~~y~aPE~~  204 (206)
                      .........++..|+|||..
T Consensus       149 ~~~~~~~~~gt~~y~aPE~~  168 (325)
T cd05594         149 DGATMKTFCGTPEYLAPEVL  168 (325)
T ss_pred             CCcccccccCCcccCCHHHH
Confidence            22333346789999999964

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=5.2e-30  Score=198.81  Aligned_cols=169  Identities=18%  Similarity=0.254  Sum_probs=142.9

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      +|+..+.||+|+||.||++... ++..||+|.+....   ......+.+|+.+++.++|+||+++++.+..       ++
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~   73 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYET-------KD   73 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecC-------CC
Confidence            4788999999999999999975 78999999986432   2223456789999999999999999988754       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..+++|||+++++|.+++..... ..+++..+..++.|++.|+.|||+   .+++|+||+|+||++++++.++|+|||++
T Consensus        74 ~~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~  149 (285)
T cd05605          74 ALCLVLTLMNGGDLKFHIYNMGN-PGFDEERAVFYAAEITCGLEDLHR---ERIVYRDLKPENILLDDYGHIRISDLGLA  149 (285)
T ss_pred             eEEEEEeccCCCcHHHHHHhcCc-CCCCHHHHHHHHHHHHHHHHHHHH---CCcEecCCCHHHEEECCCCCEEEeeCCCc
Confidence            79999999999999988765322 458899999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccccccccccCccccCCCCC
Q 028629          181 LLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      .............++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~~y~aPE~~  173 (285)
T cd05605         150 VEIPEGETIRGRVGTVGYMAPEVV  173 (285)
T ss_pred             eecCCCCccccccCCCCccCcHHh
Confidence            876544443445788899999975

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.97  E-value=3e-31  Score=196.08  Aligned_cols=169  Identities=20%  Similarity=0.371  Sum_probs=149.7

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC----Ccc----HHHHHHHHHHHhcc-CCCceeeeccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK----SHS----TRNFMHHIELISKL-RHCHLVSALGHCFEC   92 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~----~~~----~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~   92 (206)
                      .++|...+.+|.|..+.|-+|.+. +|..+|+|.+..-.    ...    .+.-.+|+.+|+++ -||+|+++.+++.+ 
T Consensus        16 y~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes-   94 (411)
T KOG0599|consen   16 YAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYES-   94 (411)
T ss_pred             HhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccC-
Confidence            467889999999999999999976 88999999886421    111    23456799999999 49999999999865 


Q ss_pred             cccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCce
Q 028629           93 YFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVA  172 (206)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~  172 (206)
                            ....++|+|.++.|.|.+.+...   -.+++.....+++|+..++.|+|.   .+|+||||||+|||++++.++
T Consensus        95 ------~sF~FlVFdl~prGELFDyLts~---VtlSEK~tR~iMrqlfegVeylHa---~~IVHRDLKpENILlddn~~i  162 (411)
T KOG0599|consen   95 ------DAFVFLVFDLMPRGELFDYLTSK---VTLSEKETRRIMRQLFEGVEYLHA---RNIVHRDLKPENILLDDNMNI  162 (411)
T ss_pred             ------cchhhhhhhhcccchHHHHhhhh---eeecHHHHHHHHHHHHHHHHHHHH---hhhhhcccChhheeeccccce
Confidence                  56789999999999999999876   579999999999999999999999   799999999999999999999


Q ss_pred             eEccCCccccccccccccccccCccccCCCCC
Q 028629          173 KISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       173 kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +|+|||+|..+.++++....+||+||+|||-.
T Consensus       163 ~isDFGFa~~l~~GekLrelCGTPgYLAPEti  194 (411)
T KOG0599|consen  163 KISDFGFACQLEPGEKLRELCGTPGYLAPETI  194 (411)
T ss_pred             EEeccceeeccCCchhHHHhcCCCcccChhhe
Confidence            99999999999999999999999999999953

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.97  E-value=6.1e-30  Score=202.44  Aligned_cols=169  Identities=14%  Similarity=0.276  Sum_probs=145.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|+..+.||+|+||.||++... ++..+|+|.+.... ......+.+|++++++++|+||+++++++..       .+
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~   76 (331)
T cd06649           4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-------DG   76 (331)
T ss_pred             cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE-------CC
Confidence            468999999999999999999976 78899999987553 2334678899999999999999999998865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..+++|||+++++|.+++...   ..+++..+..++.|++.||.|||+.  .+++|+||||+||++++++.++|+|||++
T Consensus        77 ~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH~~--~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~  151 (331)
T cd06649          77 EISICMEHMDGGSLDQVLKEA---KRIPEEILGKVSIAVLRGLAYLREK--HQIMHRDVKPSNILVNSRGEIKLCDFGVS  151 (331)
T ss_pred             EEEEEeecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHhhc--CCEEcCCCChhhEEEcCCCcEEEccCccc
Confidence            799999999999999999765   3588999999999999999999983  36999999999999999999999999999


Q ss_pred             ccccccccccccccCccccCCCCC
Q 028629          181 LLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ....... .....++..|+|||..
T Consensus       152 ~~~~~~~-~~~~~g~~~y~aPE~~  174 (331)
T cd06649         152 GQLIDSM-ANSFVGTRSYMSPERL  174 (331)
T ss_pred             ccccccc-cccCCCCcCcCCHhHh
Confidence            8664432 3345788999999975

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.97  E-value=5.7e-30  Score=202.02  Aligned_cols=167  Identities=20%  Similarity=0.297  Sum_probs=138.8

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCC-ceeeeccccccccccCCCC
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHC-HLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~-~i~~~~~~~~~~~~~~~~~   99 (206)
                      +|+..+.||+|+||.||+|... +++.||+|++....   ....+.+..|.+++..+.|+ +++++++.+..       .
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-------~   73 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQT-------M   73 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEc-------C
Confidence            4788999999999999999976 68899999997542   23345677899999999765 57777777654       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +.++++|||+++++|.+.+...   ..+++.....++.|++.||.|||+   .+++|+||||+|||+++++.++|+|||+
T Consensus        74 ~~~~lv~E~~~~g~L~~~~~~~---~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp~Nill~~~~~~kL~Dfg~  147 (324)
T cd05587          74 DRLYFVMEYVNGGDLMYHIQQV---GKFKEPHAVFYAAEIAIGLFFLHS---KGIIYRDLKLDNVMLDAEGHIKIADFGM  147 (324)
T ss_pred             CEEEEEEcCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEEcCCCCEEEeecCc
Confidence            6799999999999999988765   347889999999999999999999   7999999999999999999999999999


Q ss_pred             ccccc-ccccccccccCccccCCCCC
Q 028629          180 PLLAE-NAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~-~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +.... .........|+..|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~gt~~y~aPE~~  173 (324)
T cd05587         148 CKENIFGGKTTRTFCGTPDYIAPEII  173 (324)
T ss_pred             ceecCCCCCceeeecCCccccChhhh
Confidence            87532 22233446789999999975

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=2.5e-31  Score=214.49  Aligned_cols=169  Identities=18%  Similarity=0.292  Sum_probs=144.9

Q ss_pred             cccceeccCcceeEEEEEEe-CCcEEEEEEeecC----CCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           27 DTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK----KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        27 ~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~----~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +....||+|+|.+||+|... +|-.||+-.++..    .....+++..|+.+|+.|+|+||++++..|.+     ....+
T Consensus        43 k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d-----~~n~~  117 (632)
T KOG0584|consen   43 KFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVD-----TDNKT  117 (632)
T ss_pred             ehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheec-----CCCce
Confidence            45668999999999999976 7888987766543    34455789999999999999999999998876     22356


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec-CCCceeEccCCcc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD-QNLVAKISSYNLP  180 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~-~~~~~kl~df~~a  180 (206)
                      +.+++|.+..|+|+++..+.   ..++...+..|++||+.||.|||+ +..+|+|||||..||+|+ ..|.|||+|+|+|
T Consensus       118 in~iTEL~TSGtLr~Y~kk~---~~vn~kaik~W~RQILkGL~yLHs-~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLA  193 (632)
T KOG0584|consen  118 INFITELFTSGTLREYRKKH---RRVNIKAIKSWCRQILKGLVYLHS-QDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLA  193 (632)
T ss_pred             eeeeeecccCCcHHHHHHHh---ccCCHHHHHHHHHHHHHHhhhhhc-CCCCccccccccceEEEcCCcCceeecchhHH
Confidence            88999999999999999887   348899999999999999999998 447999999999999999 5699999999999


Q ss_pred             ccccccccccccccCccccCCCCCC
Q 028629          181 LLAENAEKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       181 ~~~~~~~~~~~~~~~~~y~aPE~~~  205 (206)
                      .+...+.- ..+.||+.|||||.+.
T Consensus       194 tl~r~s~a-ksvIGTPEFMAPEmYE  217 (632)
T KOG0584|consen  194 TLLRKSHA-KSVIGTPEFMAPEMYE  217 (632)
T ss_pred             HHhhcccc-ceeccCccccChHHHh
Confidence            98876543 3389999999999763

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=8.4e-32  Score=216.50  Aligned_cols=166  Identities=17%  Similarity=0.305  Sum_probs=146.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCcc---HHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHS---TRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~---~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ...|..++.||.|+||.||.++.. +.+.||||.+.......   ..++..|+.+|+++.|||++.+.++++.       
T Consensus        25 Eklf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLr-------   97 (948)
T KOG0577|consen   25 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLR-------   97 (948)
T ss_pred             HHHHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeec-------
Confidence            356899999999999999999964 88999999998665433   4578999999999999999999999876       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ....|+|||||-| +-.+++....  +++.+-.+..|+.+.++||.|||+   .+.||||||..|||+++.|.||++|||
T Consensus        98 e~TaWLVMEYClG-SAsDlleVhk--KplqEvEIAAi~~gaL~gLaYLHS---~~~IHRDiKAGNILLse~g~VKLaDFG  171 (948)
T KOG0577|consen   98 EHTAWLVMEYCLG-SASDLLEVHK--KPLQEVEIAAITHGALQGLAYLHS---HNRIHRDIKAGNILLSEPGLVKLADFG  171 (948)
T ss_pred             cchHHHHHHHHhc-cHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHH---hhHHhhhccccceEecCCCeeeecccc
Confidence            6679999999965 8888887654  578899999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccccccccccCccccCCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      .|.+..+   .+...||+.|||||.+
T Consensus       172 SAsi~~P---AnsFvGTPywMAPEVI  194 (948)
T KOG0577|consen  172 SASIMAP---ANSFVGTPYWMAPEVI  194 (948)
T ss_pred             chhhcCc---hhcccCCccccchhHh
Confidence            9998865   5668999999999964

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.97  E-value=8e-30  Score=199.33  Aligned_cols=169  Identities=18%  Similarity=0.323  Sum_probs=140.6

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|...+.||+|+||.||+|... +++.||+|.+.... ......+.+|+.+++.++|+||+++++++..       ..
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-------~~   76 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHT-------KE   76 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEec-------CC
Confidence            478999999999999999999976 78999999987543 2233457789999999999999999998865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..+++|||+. ++|.+.+....  ..+++..+..++.|++.||.|||+   .+++|+||||+||++++++.+||+|||++
T Consensus        77 ~~~lv~e~~~-~~l~~~~~~~~--~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~  150 (303)
T cd07869          77 TLTLVFEYVH-TDLCQYMDKHP--GGLHPENVKLFLFQLLRGLSYIHQ---RYILHRDLKPQNLLISDTGELKLADFGLA  150 (303)
T ss_pred             eEEEEEECCC-cCHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEECCCCcc
Confidence            7999999996 47877776543  357889999999999999999999   79999999999999999999999999999


Q ss_pred             cccccc-ccccccccCccccCCCCC
Q 028629          181 LLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      ...... .......++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~y~aPE~~  175 (303)
T cd07869         151 RAKSVPSHTYSNEVVTLWYRPPDVL  175 (303)
T ss_pred             eeccCCCccCCCCcccCCCCChHHH
Confidence            754322 222335678899999953

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.97  E-value=1.1e-29  Score=196.93  Aligned_cols=168  Identities=17%  Similarity=0.280  Sum_probs=140.8

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ++|...+.||+|+||.||+|+.. ++..||+|.+....  ....+.+.+|+++++.++|+||+++++.+..       .+
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~   73 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRR-------RG   73 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEec-------CC
Confidence            47999999999999999999986 68899999987543  2334567889999999999999999988754       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..+++|||++++.+..+....   ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++
T Consensus        74 ~~~lv~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dlkp~Nill~~~~~~kl~Dfg~~  147 (287)
T cd07848          74 KLYLVFEYVEKNMLELLEEMP---NGVPPEKVRSYIYQLIKAIHWCHK---NDIVHRDIKPENLLISHNDVLKLCDFGFA  147 (287)
T ss_pred             EEEEEEecCCCCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCcEEEeeccCc
Confidence            899999999987666544332   358899999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccc--cccccccCccccCCCCC
Q 028629          181 LLAENAE--KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~--~~~~~~~~~~y~aPE~~  204 (206)
                      .......  ......++..|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~y~aPE~~  173 (287)
T cd07848         148 RNLSEGSNANYTEYVATRWYRSPELL  173 (287)
T ss_pred             ccccccccccccccccccccCCcHHH
Confidence            8765332  22335788899999964

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.97  E-value=9.2e-30  Score=199.02  Aligned_cols=172  Identities=18%  Similarity=0.375  Sum_probs=139.3

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-----------------CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceee
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-----------------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVS   84 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-----------------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~   84 (206)
                      .++|...+.||+|+||.||+|...                 ++..||+|.+.... ......+.+|+.++.+++|+||++
T Consensus         4 ~~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~   83 (304)
T cd05096           4 RGHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIR   83 (304)
T ss_pred             hhhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeE
Confidence            467999999999999999999853                 23469999887543 223457889999999999999999


Q ss_pred             eccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCC----------------CcccCHHHHHHHHHHHHHHHHHHhc
Q 028629           85 ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA----------------WQSLTWTQRISAAIGVARGIQFLHT  148 (206)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~----------------~~~~~~~~~~~~~~~i~~~l~~lH~  148 (206)
                      +++++..       .+..+++|||+++++|.+++.....                ...+++..++.++.|++.||.|||+
T Consensus        84 ~~~~~~~-------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~  156 (304)
T cd05096          84 LLGVCVD-------EDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSS  156 (304)
T ss_pred             EEEEEec-------CCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            9998865       4568999999999999998864311                1246788899999999999999999


Q ss_pred             CCCCceeccCCccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCCC
Q 028629          149 GIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       149 ~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                         .+++|+||||+||++++++.+||+|||+++......   ......++..|+|||..
T Consensus       157 ---~~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  212 (304)
T cd05096         157 ---LNFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECI  212 (304)
T ss_pred             ---CCccccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHH
Confidence               799999999999999999999999999998654332   12223446789999964

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.97  E-value=6.8e-30  Score=201.56  Aligned_cols=165  Identities=22%  Similarity=0.347  Sum_probs=137.1

Q ss_pred             CcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHH---hccCCCceeeeccccccccccCCC
Q 028629           26 FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELI---SKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l---~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      |+..+.||+|++|.||+|... ++..||+|.++...   ....+.+.+|..++   +.++|+||+++++++..       
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~-------   73 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQT-------   73 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEc-------
Confidence            677889999999999999976 78999999997432   22344566666554   56689999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+..+++|||+++++|...+..    ..+++...+.++.|++.||.|||+   .+++||||||+||++++++.+||+|||
T Consensus        74 ~~~~~lv~E~~~~~~L~~~~~~----~~l~~~~~~~~~~qi~~al~~lH~---~~ivHrdlkp~Nill~~~~~~kL~Dfg  146 (324)
T cd05589          74 EDHVCFVMEYAAGGDLMMHIHT----DVFSEPRAVFYAACVVLGLQYLHE---NKIVYRDLKLDNLLLDTEGFVKIADFG  146 (324)
T ss_pred             CCEEEEEEcCCCCCcHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHh---CCeEecCCCHHHeEECCCCcEEeCccc
Confidence            5689999999999999888764    358999999999999999999999   799999999999999999999999999


Q ss_pred             ccccccc-cccccccccCccccCCCCC
Q 028629          179 LPLLAEN-AEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~-~~~~~~~~~~~~y~aPE~~  204 (206)
                      ++..... ........++..|+|||..
T Consensus       147 ~~~~~~~~~~~~~~~~g~~~y~aPE~~  173 (324)
T cd05589         147 LCKEGMGFGDRTSTFCGTPEFLAPEVL  173 (324)
T ss_pred             CCccCCCCCCcccccccCccccCHhHh
Confidence            9875432 2333446789999999964

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.97  E-value=3.9e-31  Score=206.72  Aligned_cols=173  Identities=18%  Similarity=0.249  Sum_probs=152.2

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      ...+.|+.-++||+|+||+||-|..+ +|+.||+|.+.++.   .......++|-.+|+++..+.|+.+--++.+     
T Consensus       182 vt~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeT-----  256 (591)
T KOG0986|consen  182 VTKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFET-----  256 (591)
T ss_pred             ccccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecC-----
Confidence            34578999999999999999999977 89999999887542   4445567889999999999999988776644     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                        .+.+|+|+..+.||+|.-.+.+..+ +.+++.....++.+|+.||.+||+   .+|+.||+||+|||+|+.|+++|+|
T Consensus       257 --kd~LClVLtlMNGGDLkfHiyn~g~-~gF~e~ra~FYAAEi~cGLehlH~---~~iVYRDLKPeNILLDd~GhvRISD  330 (591)
T KOG0986|consen  257 --KDALCLVLTLMNGGDLKFHIYNHGN-PGFDEQRARFYAAEIICGLEHLHR---RRIVYRDLKPENILLDDHGHVRISD  330 (591)
T ss_pred             --CCceEEEEEeecCCceeEEeeccCC-CCCchHHHHHHHHHHHhhHHHHHh---cceeeccCChhheeeccCCCeEeec
Confidence              6789999999999999988876554 679999999999999999999999   8999999999999999999999999


Q ss_pred             CCccccccccccccccccCccccCCCCC
Q 028629          177 YNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +|+|.-+..........||.||||||..
T Consensus       331 LGLAvei~~g~~~~~rvGT~GYMAPEvl  358 (591)
T KOG0986|consen  331 LGLAVEIPEGKPIRGRVGTVGYMAPEVL  358 (591)
T ss_pred             cceEEecCCCCccccccCcccccCHHHH
Confidence            9999988877666667999999999964

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.97  E-value=6.5e-30  Score=211.27  Aligned_cols=171  Identities=10%  Similarity=0.146  Sum_probs=143.6

Q ss_pred             CCcccceeccCcceeEEEEEEe-C-CcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-N-GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~-~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      .|...+.||.|++|.||+|... + +..|++|.+..........+.+|+.+++.++|+||+++++.+..       .+..
T Consensus        68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~-------~~~~  140 (478)
T PTZ00267         68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKS-------DDKL  140 (478)
T ss_pred             eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEE-------CCEE
Confidence            3889999999999999999865 4 67888898765544445567889999999999999999998865       6789


Q ss_pred             EEEEeecCCCCHHHHHhcC-CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          103 FLIFEYVPNGTLRSWISEG-HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      +++|||+++++|.+.+... ....++++..+..++.|++.||.|+|+   .+|+||||||+|||+++++.++|+|||++.
T Consensus       141 ~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~---~~ivHrDlkp~NIll~~~~~~kL~DFgla~  217 (478)
T PTZ00267        141 LLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHS---RKMMHRDLKSANIFLMPTGIIKLGDFGFSK  217 (478)
T ss_pred             EEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh---CCEEECCcCHHhEEECCCCcEEEEeCcCce
Confidence            9999999999999887542 112468899999999999999999999   799999999999999999999999999998


Q ss_pred             cccccc---cccccccCccccCCCCCC
Q 028629          182 LAENAE---KVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       182 ~~~~~~---~~~~~~~~~~y~aPE~~~  205 (206)
                      ......   ......||.+|+|||...
T Consensus       218 ~~~~~~~~~~~~~~~gt~~y~aPE~~~  244 (478)
T PTZ00267        218 QYSDSVSLDVASSFCGTPYYLAPELWE  244 (478)
T ss_pred             ecCCccccccccccCCCccccCHhHhC
Confidence            765432   233456899999999753

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.97  E-value=3.2e-30  Score=207.32  Aligned_cols=176  Identities=20%  Similarity=0.384  Sum_probs=145.9

Q ss_pred             HHHHHhcCCcccceeccCcceeEEEEEEe--CC--cE-EEEEEeecC---CCccHHHHHHHHHHHhccCCCceeeecccc
Q 028629           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLK--NG--TF-IAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHC   89 (206)
Q Consensus        18 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~--~~--~~-vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~   89 (206)
                      .|.-...+-...++||+|+||.||+|.+.  ++  .. ||+|....+   ......++++|.++|++++|+||++++|++
T Consensus       151 ~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa  230 (474)
T KOG0194|consen  151 KWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVA  230 (474)
T ss_pred             ccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence            34444566777799999999999999975  22  23 899998753   255567899999999999999999999998


Q ss_pred             ccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC
Q 028629           90 FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN  169 (206)
Q Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~  169 (206)
                      ..       ...++++||+|+||+|.+++....  ..++..++..++.+.+.||.|||.   .+++||||-.+|+|++.+
T Consensus       231 ~~-------~~Pl~ivmEl~~gGsL~~~L~k~~--~~v~~~ek~~~~~~AA~Gl~YLh~---k~~IHRDIAARNcL~~~~  298 (474)
T KOG0194|consen  231 VL-------EEPLMLVMELCNGGSLDDYLKKNK--KSLPTLEKLRFCYDAARGLEYLHS---KNCIHRDIAARNCLYSKK  298 (474)
T ss_pred             cC-------CCccEEEEEecCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHhHHHHHHH---CCCcchhHhHHHheecCC
Confidence            76       667999999999999999999874  259999999999999999999999   899999999999999999


Q ss_pred             CceeEccCCcccccccccccc-ccccCccccCCCCCC
Q 028629          170 LVAKISSYNLPLLAENAEKVG-HVTPYSGSINPTNSA  205 (206)
Q Consensus       170 ~~~kl~df~~a~~~~~~~~~~-~~~~~~~y~aPE~~~  205 (206)
                      +.+||+|||+++......... ...-...|+|||...
T Consensus       299 ~~vKISDFGLs~~~~~~~~~~~~~klPirWLAPEtl~  335 (474)
T KOG0194|consen  299 GVVKISDFGLSRAGSQYVMKKFLKKLPIRWLAPETLN  335 (474)
T ss_pred             CeEEeCccccccCCcceeeccccccCcceecChhhhc
Confidence            999999999998665322111 223445799999753

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.97  E-value=8.4e-30  Score=201.48  Aligned_cols=162  Identities=20%  Similarity=0.288  Sum_probs=136.3

Q ss_pred             ceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCCceEEE
Q 028629           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +.||+|+||.||++... ++..||+|.+....   ......+..|..++.++ +|+||+++++++..       .+..++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~-------~~~~~l   73 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQT-------ESRLFF   73 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEe-------CCEEEE
Confidence            46899999999999976 78899999997542   23344577788888776 79999999998765       568999


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      +|||+++++|..++...   ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+++...
T Consensus        74 v~E~~~~~~L~~~~~~~---~~l~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~  147 (329)
T cd05618          74 VIEYVNGGDLMFHMQRQ---RKLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL  147 (329)
T ss_pred             EEeCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEECCCCCEEEeeCCcccccc
Confidence            99999999999888665   458899999999999999999999   799999999999999999999999999997532


Q ss_pred             -ccccccccccCccccCCCCC
Q 028629          185 -NAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       185 -~~~~~~~~~~~~~y~aPE~~  204 (206)
                       .........|+..|+|||..
T Consensus       148 ~~~~~~~~~~gt~~y~aPE~~  168 (329)
T cd05618         148 RPGDTTSTFCGTPNYIAPEIL  168 (329)
T ss_pred             CCCCccccccCCccccCHHHH
Confidence             22333446789999999964

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.97  E-value=9.2e-30  Score=201.26  Aligned_cols=162  Identities=19%  Similarity=0.285  Sum_probs=137.0

Q ss_pred             ceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCCceEEE
Q 028629           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +.||+|+||.||++... ++..||+|+++...   ....+.+..|..++..+ +|+||+++++.+..       .+.+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~-------~~~~~l   73 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQT-------ESRLFF   73 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEc-------CCEEEE
Confidence            46899999999999976 78999999997542   22344577899999888 69999999998765       568999


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccc-
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA-  183 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~-  183 (206)
                      +|||+++++|..++...   ..+++..+..++.|++.||.|||+   .+++||||+|+||++++++.++|+|||+++.. 
T Consensus        74 v~e~~~~g~L~~~~~~~---~~l~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~  147 (329)
T cd05588          74 VIEFVSGGDLMFHMQRQ---RKLPEEHARFYSAEISLALNFLHE---RGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGI  147 (329)
T ss_pred             EEeCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEECCCCCEEECcCccccccc
Confidence            99999999999888655   358999999999999999999999   79999999999999999999999999998743 


Q ss_pred             cccccccccccCccccCCCCC
Q 028629          184 ENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       184 ~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ..........|+..|+|||..
T Consensus       148 ~~~~~~~~~~gt~~y~aPE~~  168 (329)
T cd05588         148 RPGDTTSTFCGTPNYIAPEIL  168 (329)
T ss_pred             cCCCccccccCCccccCHHHH
Confidence            222334446789999999964

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.97  E-value=1.3e-29  Score=200.70  Aligned_cols=171  Identities=20%  Similarity=0.273  Sum_probs=140.2

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +|+..+.||+|+||.||+|... ++..||+|.+....  ......+.+|+.++++++|+||+++++++.....  .....
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~--~~~~~   78 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSR--REFKD   78 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCC--CCCce
Confidence            5888999999999999999976 78999999986432  2334568899999999999999999998754211  12245


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .+++|||+. ++|.+++...   ..+++..+..++.|++.||.|||+   .+++|+||||+||++++++.++|+|||+++
T Consensus        79 ~~lv~e~~~-~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~  151 (338)
T cd07859          79 IYVVFELME-SDLHQVIKAN---DDLTPEHHQFFLYQLLRALKYIHT---ANVFHRDLKPKNILANADCKLKICDFGLAR  151 (338)
T ss_pred             EEEEEecCC-CCHHHHHHhc---ccCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCcEEEccCcccc
Confidence            899999995 5899888765   458899999999999999999999   799999999999999999999999999998


Q ss_pred             ccccccc----ccccccCccccCCCCC
Q 028629          182 LAENAEK----VGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~~----~~~~~~~~~y~aPE~~  204 (206)
                      .......    .....++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~t~~y~aPE~~  178 (338)
T cd07859         152 VAFNDTPTAIFWTDYVATRWYRAPELC  178 (338)
T ss_pred             ccccccCccccccCCCCCCCcCCHHHH
Confidence            6533221    1235788899999953

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.97  E-value=1.1e-29  Score=201.05  Aligned_cols=167  Identities=16%  Similarity=0.264  Sum_probs=140.1

Q ss_pred             CCcccceeccCcceeEEEEEEe----CCcEEEEEEeecCC----CccHHHHHHHHHHHhcc-CCCceeeecccccccccc
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK----SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFD   95 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~----~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~   95 (206)
                      +|+..+.||+|+||.||++...    ++..||+|++....    ....+.+..|+.+++.+ +|++|+++++.+..    
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~----   76 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQT----   76 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEec----
Confidence            4888999999999999999852    57899999986432    22345677899999999 58999999887754    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                         .+.++++|||+++++|.+++...   ..+++..+..++.|++.||.|||+   .+++||||||+|||+++++.++|+
T Consensus        77 ---~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~ivHrDlkp~Nili~~~~~~kl~  147 (332)
T cd05614          77 ---EAKLHLILDYVSGGEMFTHLYQR---DNFSEDEVRFYSGEIILALEHLHK---LGIVYRDIKLENILLDSEGHVVLT  147 (332)
T ss_pred             ---CCEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcEecCCCHHHeEECCCCCEEEe
Confidence               56799999999999999988765   458899999999999999999999   799999999999999999999999


Q ss_pred             cCCccccccccc--cccccccCccccCCCCC
Q 028629          176 SYNLPLLAENAE--KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       176 df~~a~~~~~~~--~~~~~~~~~~y~aPE~~  204 (206)
                      |||++.......  ......|+..|+|||..
T Consensus       148 DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~  178 (332)
T cd05614         148 DFGLSKEFLSEEKERTYSFCGTIEYMAPEII  178 (332)
T ss_pred             eCcCCccccccCCCccccccCCccccCHHHh
Confidence            999998653322  23345789999999964

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.97  E-value=1.2e-29  Score=200.96  Aligned_cols=169  Identities=13%  Similarity=0.274  Sum_probs=144.6

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|+..+.||+|+||.||++... ++..+++|.+.... ......+.+|++++++++|+||+++++++..       .+
T Consensus         4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~   76 (333)
T cd06650           4 DDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-------DG   76 (333)
T ss_pred             hhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEE-------CC
Confidence            478999999999999999999976 78899999887543 2334568899999999999999999998865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..+++|||+++++|.+++...   ..+++.....++.|++.||.|||+.  .+++|+||||+||++++++.++|+|||++
T Consensus        77 ~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~l~~~l~~lH~~--~~ivH~dlkp~Nili~~~~~~kL~Dfg~~  151 (333)
T cd06650          77 EISICMEHMDGGSLDQVLKKA---GRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVS  151 (333)
T ss_pred             EEEEEEecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhc--CCEEecCCChhhEEEcCCCCEEEeeCCcc
Confidence            899999999999999998765   4588899999999999999999973  47999999999999999999999999999


Q ss_pred             ccccccccccccccCccccCCCCC
Q 028629          181 LLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ....... .....++..|+|||..
T Consensus       152 ~~~~~~~-~~~~~~~~~y~aPE~~  174 (333)
T cd06650         152 GQLIDSM-ANSFVGTRSYMSPERL  174 (333)
T ss_pred             hhhhhhc-cccCCCCccccCHHHh
Confidence            7654322 2335788899999975

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.97  E-value=1.1e-29  Score=200.26  Aligned_cols=167  Identities=20%  Similarity=0.285  Sum_probs=138.9

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCC
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      +|...+.||+|+||.||+|... ++..||+|.+....   .........|..++..+ +|++++++.+.+..       .
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-------~   73 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQT-------M   73 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEec-------C
Confidence            4788999999999999999976 68899999997542   22234566677887777 57888888887754       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +.++++|||+++++|.+.+...   ..+++..+..++.|++.||.|||+   .+++||||||+|||+++++.++|+|||+
T Consensus        74 ~~~~lv~E~~~~g~L~~~~~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~kL~DfG~  147 (323)
T cd05616          74 DRLYFVMEYVNGGDLMYQIQQV---GRFKEPHAVFYAAEIAIGLFFLHS---KGIIYRDLKLDNVMLDSEGHIKIADFGM  147 (323)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCEEecCCCHHHeEECCCCcEEEccCCC
Confidence            6799999999999999988765   358899999999999999999999   7999999999999999999999999999


Q ss_pred             cccccc-cccccccccCccccCCCCC
Q 028629          180 PLLAEN-AEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~-~~~~~~~~~~~~y~aPE~~  204 (206)
                      ++.... ........|++.|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~gt~~y~aPE~~  173 (323)
T cd05616         148 CKENMWDGVTTKTFCGTPDYIAPEII  173 (323)
T ss_pred             ceecCCCCCccccCCCChhhcCHHHh
Confidence            975432 2334446789999999964

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.97  E-value=1.2e-29  Score=200.91  Aligned_cols=169  Identities=16%  Similarity=0.200  Sum_probs=142.0

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC---CCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ++|...+.||+|+||.||++... ++..+|+|.+...   .......+.+|+.++..++|++|+++++.+..       .
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-------~   73 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQD-------E   73 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEec-------C
Confidence            46899999999999999999976 6889999998642   22334457789999999999999999988755       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +.++++|||+++++|.+++....  ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.++|+|||+
T Consensus        74 ~~~~lv~ey~~~g~L~~~l~~~~--~~l~~~~~~~~~~qi~~al~~lH~---~~iiHrDlkp~Nili~~~~~~kL~DfG~  148 (332)
T cd05623          74 NNLYLVMDYYVGGDLLTLLSKFE--DRLPEDMARFYLAEMVIAIDSVHQ---LHYVHRDIKPDNILMDMNGHIRLADFGS  148 (332)
T ss_pred             CEEEEEEeccCCCcHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHEEECCCCCEEEeecch
Confidence            68999999999999999997633  358889999999999999999999   8999999999999999999999999999


Q ss_pred             cccccccc--cccccccCccccCCCCC
Q 028629          180 PLLAENAE--KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~--~~~~~~~~~~y~aPE~~  204 (206)
                      +.......  ......|+..|+|||..
T Consensus       149 a~~~~~~~~~~~~~~~gt~~y~aPE~~  175 (332)
T cd05623         149 CLKLMEDGTVQSSVAVGTPDYISPEIL  175 (332)
T ss_pred             heecccCCcceecccccCccccCHHHH
Confidence            97553322  22335789999999964

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.97  E-value=7.1e-30  Score=200.95  Aligned_cols=162  Identities=19%  Similarity=0.275  Sum_probs=137.4

Q ss_pred             ceeccCcceeEEEEEEe----CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEE
Q 028629           30 AFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~----~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~  103 (206)
                      +.||+|+||.||++...    +|..||+|++....  ......+.+|++++++++|+||+++++.+..       .+.++
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-------~~~~~   74 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQT-------EGKLY   74 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEc-------CCEEE
Confidence            57999999999998842    58899999997543  2233456789999999999999999988765       56899


Q ss_pred             EEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccc
Q 028629          104 LIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  183 (206)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~  183 (206)
                      ++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++...
T Consensus        75 lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~  148 (318)
T cd05582          75 LILDFLRGGDLFTRLSKE---VMFTEEDVKFYLAELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSKES  148 (318)
T ss_pred             EEEcCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHeEECCCCcEEEeeccCCccc
Confidence            999999999999988765   458999999999999999999999   79999999999999999999999999999865


Q ss_pred             ccc-ccccccccCccccCCCCC
Q 028629          184 ENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       184 ~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      ... .......++..|+|||..
T Consensus       149 ~~~~~~~~~~~g~~~y~aPE~~  170 (318)
T cd05582         149 IDHEKKAYSFCGTVEYMAPEVV  170 (318)
T ss_pred             CCCCCceecccCChhhcCHHHH
Confidence            443 233346788999999964

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.97  E-value=3e-29  Score=194.69  Aligned_cols=174  Identities=18%  Similarity=0.323  Sum_probs=139.6

Q ss_pred             cCCcccceeccCcceeEEEEEEe--CCcEEEEEEeecCC--CccHHHHHHHHHHHhcc---CCCceeeeccccccccccC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK--NGTFIAIRCLKMKK--SHSTRNFMHHIELISKL---RHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~--~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l---~h~~i~~~~~~~~~~~~~~   96 (206)
                      ++|+..+.||+|+||.||+|...  ++..||+|.+....  ........+|+.+++.+   +||||+++++++.....  
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~--   78 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT--   78 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccC--
Confidence            47899999999999999999963  46789999987543  22234556677766665   69999999998753211  


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                      .....+++++|++. ++|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||||+||++++++.++|+|
T Consensus        79 ~~~~~~~lv~e~~~-~~l~~~~~~~~~-~~~~~~~~~~i~~qi~~aL~~lH~---~~iiH~dlkp~Nil~~~~~~~kl~D  153 (290)
T cd07862          79 DRETKLTLVFEHVD-QDLTTYLDKVPE-PGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLAD  153 (290)
T ss_pred             CCCCcEEEEEccCC-CCHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEEcCCCCEEEcc
Confidence            12456899999996 489988875433 458899999999999999999999   7999999999999999999999999


Q ss_pred             CCccccccccccccccccCccccCCCCC
Q 028629          177 YNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ||++.............++..|+|||..
T Consensus       154 fg~~~~~~~~~~~~~~~~~~~y~aPE~~  181 (290)
T cd07862         154 FGLARIYSFQMALTSVVVTLWYRAPEVL  181 (290)
T ss_pred             ccceEeccCCcccccccccccccChHHH
Confidence            9999876655444556788999999964

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.97  E-value=1.7e-29  Score=199.01  Aligned_cols=162  Identities=22%  Similarity=0.334  Sum_probs=133.1

Q ss_pred             ceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHH-HHhccCCCceeeeccccccccccCCCCceEEE
Q 028629           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIE-LISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~-~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +.||+|+||.||+|... ++..||+|.+....   ......+..|.. +++.++|+||+++++.+..       .+..++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~-------~~~~~l   73 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQT-------AEKLYF   73 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEc-------CCEEEE
Confidence            46899999999999976 78999999987432   222334555554 6788899999999987754       568999


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      +|||+++++|...+...   ..+++..+..++.|++.||.|||+   .+++||||||+||+++.++.+||+|||+++...
T Consensus        74 v~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~L~~lH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~  147 (321)
T cd05603          74 VLDYVNGGELFFHLQRE---RCFLEPRARFYAAEVASAIGYLHS---LNIIYRDLKPENILLDSQGHVVLTDFGLCKEGV  147 (321)
T ss_pred             EEcCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeEECCCCCEEEccCCCCccCC
Confidence            99999999999888764   457888899999999999999999   799999999999999999999999999987532


Q ss_pred             -ccccccccccCccccCCCCC
Q 028629          185 -NAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       185 -~~~~~~~~~~~~~y~aPE~~  204 (206)
                       .........++..|+|||..
T Consensus       148 ~~~~~~~~~~gt~~y~aPE~~  168 (321)
T cd05603         148 EPEETTSTFCGTPEYLAPEVL  168 (321)
T ss_pred             CCCCccccccCCcccCCHHHh
Confidence             22334446788999999964

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.97  E-value=6.1e-30  Score=213.26  Aligned_cols=181  Identities=16%  Similarity=0.239  Sum_probs=145.3

Q ss_pred             hcCCcccceeccCcceeEEEEEEeC-CcEEEEEEeecCCCccHHHHHHHHHHHhccC-CCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~-~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ..++++.+.|.+|||+.||+|.... |..||+|++........+.+.+||++|++|+ |+||+.+++........+....
T Consensus        36 ~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~  115 (738)
T KOG1989|consen   36 SHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVW  115 (738)
T ss_pred             CEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCcee
Confidence            3577889999999999999999774 4999999997776677788999999999997 9999999994322122222234


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..+|+||||.+|.|-+++..+.. ..+++.+++.|+.|+|+|+.+||. ...+|+|||||.+||||+.++..||||||.|
T Consensus       116 EvllLmEyC~gg~Lvd~mn~Rlq-~~lte~eVLkIf~dv~~AVa~mH~-~~pPiIHRDLKiENvLls~~g~~KLCDFGSa  193 (738)
T KOG1989|consen  116 EVLLLMEYCKGGSLVDFMNTRLQ-TRLTEDEVLKIFYDVCEAVAAMHY-LKPPIIHRDLKIENVLLSADGNYKLCDFGSA  193 (738)
T ss_pred             EEEeehhhccCCcHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHhc-CCCccchhhhhhhheEEcCCCCEEeCccccc
Confidence            67899999999999999986533 349999999999999999999998 3357999999999999999999999999999


Q ss_pred             ccccccc----------cccccccCccccCCCCCC
Q 028629          181 LLAENAE----------KVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       181 ~~~~~~~----------~~~~~~~~~~y~aPE~~~  205 (206)
                      ...-...          ..-..-.|+-|+|||..+
T Consensus       194 tt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMID  228 (738)
T KOG1989|consen  194 TTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMID  228 (738)
T ss_pred             ccccCCCccHHHHHHHHHHHHhhCCccccChHHHh
Confidence            6432111          111135678899999764

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.97  E-value=1.4e-29  Score=199.47  Aligned_cols=162  Identities=22%  Similarity=0.346  Sum_probs=136.0

Q ss_pred             ceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCCceEEE
Q 028629           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +.||+|+||.||+|... +++.||+|.+....   ....+.+..|..++..+ +|+||+++++++..       .+.+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~-------~~~~~i   73 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQT-------PDRLFF   73 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEc-------CCEEEE
Confidence            46899999999999976 68899999987432   23345667788888876 69999999998765       568999


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      +|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+++||||||+||++++++.++|+|||+++...
T Consensus        74 v~Ey~~~g~L~~~i~~~---~~l~~~~~~~~~~ql~~~L~~lH~---~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~  147 (320)
T cd05590          74 VMEFVNGGDLMFHIQKS---RRFDEARARFYAAEITSALMFLHD---KGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGI  147 (320)
T ss_pred             EEcCCCCchHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCHHHeEECCCCcEEEeeCCCCeecC
Confidence            99999999999988765   358899999999999999999999   799999999999999999999999999987542


Q ss_pred             -ccccccccccCccccCCCCC
Q 028629          185 -NAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       185 -~~~~~~~~~~~~~y~aPE~~  204 (206)
                       .........++..|+|||..
T Consensus       148 ~~~~~~~~~~gt~~y~aPE~~  168 (320)
T cd05590         148 FNGKTTSTFCGTPDYIAPEIL  168 (320)
T ss_pred             cCCCcccccccCccccCHHHH
Confidence             22333446789999999964

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.97  E-value=1.7e-29  Score=199.39  Aligned_cols=162  Identities=19%  Similarity=0.306  Sum_probs=133.5

Q ss_pred             ceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHH-HHhccCCCceeeeccccccccccCCCCceEEE
Q 028629           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIE-LISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~-~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +.||+|+||.||+|... +|..+|+|++....   ......+..|.. +++.++|+||+++++.+..       .+..++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~-------~~~~~l   73 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQT-------TEKLYF   73 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEec-------CCEEEE
Confidence            46899999999999975 79999999997542   222334555554 5677899999999987755       568999


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      +|||+++++|...+...   ..+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||+++...
T Consensus        74 v~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~al~~lH~---~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~  147 (325)
T cd05604          74 VLDFVNGGELFFHLQRE---RSFPEPRARFYAAEIASALGYLHS---INIVYRDLKPENILLDSQGHVVLTDFGLCKEGI  147 (325)
T ss_pred             EEcCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHeEECCCCCEEEeecCCcccCC
Confidence            99999999999888765   458899999999999999999999   799999999999999999999999999987532


Q ss_pred             -ccccccccccCccccCCCCC
Q 028629          185 -NAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       185 -~~~~~~~~~~~~~y~aPE~~  204 (206)
                       .........++..|+|||..
T Consensus       148 ~~~~~~~~~~gt~~y~aPE~~  168 (325)
T cd05604         148 AQSDTTTTFCGTPEYLAPEVI  168 (325)
T ss_pred             CCCCCcccccCChhhCCHHHH
Confidence             22333446789999999964

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.97  E-value=1.7e-29  Score=199.10  Aligned_cols=162  Identities=23%  Similarity=0.293  Sum_probs=135.4

Q ss_pred             ceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCCceEEE
Q 028629           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +.||+|+||.||+|... +++.||+|++....   ......+..|.+++..+ +|+||+++++.+..       .+..++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~-------~~~~~l   73 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQT-------KDRLFF   73 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEc-------CCeEEE
Confidence            46899999999999976 68899999997542   23344567788888866 79999999998865       567999


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      +|||+++++|...+...   ..+++.....++.|++.||.|||+   .+++||||||+||++++++.++|+|||++....
T Consensus        74 v~E~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~  147 (321)
T cd05591          74 VMEYVNGGDLMFQIQRS---RKFDEPRSRFYAAEVTLALMFLHR---HGVIYRDLKLDNILLDAEGHCKLADFGMCKEGI  147 (321)
T ss_pred             EEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEEeecccceecc
Confidence            99999999999888765   358889999999999999999999   799999999999999999999999999987543


Q ss_pred             c-cccccccccCccccCCCCC
Q 028629          185 N-AEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       185 ~-~~~~~~~~~~~~y~aPE~~  204 (206)
                      . ........++..|+|||..
T Consensus       148 ~~~~~~~~~~gt~~y~aPE~~  168 (321)
T cd05591         148 LNGVTTTTFCGTPDYIAPEIL  168 (321)
T ss_pred             cCCccccccccCccccCHHHH
Confidence            2 2333445788999999964

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.97  E-value=1.3e-29  Score=202.29  Aligned_cols=165  Identities=15%  Similarity=0.291  Sum_probs=138.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ..+|...+.||+|+||.||++... +++.||+|.+.... ......+.+|+++++.++|+||+++++++..       .+
T Consensus        73 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~  145 (353)
T PLN00034         73 LSELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDH-------NG  145 (353)
T ss_pred             HHHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEecc-------CC
Confidence            356788899999999999999976 78999999986443 2334678899999999999999999998754       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      .+++++||+++++|...       ...++..+..++.|++.||.|||+   .+++|+||||+|||+++++.+||+|||++
T Consensus       146 ~~~lv~e~~~~~~L~~~-------~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~kL~DfG~~  215 (353)
T PLN00034        146 EIQVLLEFMDGGSLEGT-------HIADEQFLADVARQILSGIAYLHR---RHIVHRDIKPSNLLINSAKNVKIADFGVS  215 (353)
T ss_pred             eEEEEEecCCCCccccc-------ccCCHHHHHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEcCCCCEEEcccccc
Confidence            79999999999988642       235577788899999999999999   79999999999999999999999999999


Q ss_pred             ccccccc-cccccccCccccCCCCC
Q 028629          181 LLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      +...... ......++..|+|||..
T Consensus       216 ~~~~~~~~~~~~~~gt~~y~aPE~~  240 (353)
T PLN00034        216 RILAQTMDPCNSSVGTIAYMSPERI  240 (353)
T ss_pred             eecccccccccccccCccccCcccc
Confidence            8765432 22345788999999975

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.97  E-value=2.2e-29  Score=198.02  Aligned_cols=162  Identities=23%  Similarity=0.342  Sum_probs=133.8

Q ss_pred             ceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCCceEEE
Q 028629           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +.||+|+||.||+|... +++.||+|+++...   ....+....|..++... +|+||+++++.+..       .+..++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~-------~~~~~l   73 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQT-------KEHLFF   73 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEc-------CCEEEE
Confidence            46899999999999976 68899999997542   22334455666666654 79999999988754       568999


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      +|||+++++|..++...   ..+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||+++...
T Consensus        74 v~e~~~gg~L~~~~~~~---~~~~~~~~~~~~~qi~~al~~LH~---~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~  147 (316)
T cd05592          74 VMEYLNGGDLMFHIQSS---GRFDEARARFYAAEIICGLQFLHK---KGIIYRDLKLDNVLLDKDGHIKIADFGMCKENM  147 (316)
T ss_pred             EEcCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCEEeCCCCHHHeEECCCCCEEEccCcCCeECC
Confidence            99999999999988765   358899999999999999999999   799999999999999999999999999997543


Q ss_pred             c-cccccccccCccccCCCCC
Q 028629          185 N-AEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       185 ~-~~~~~~~~~~~~y~aPE~~  204 (206)
                      . ........++..|+|||..
T Consensus       148 ~~~~~~~~~~gt~~y~aPE~~  168 (316)
T cd05592         148 NGEGKASTFCGTPDYIAPEIL  168 (316)
T ss_pred             CCCCccccccCCccccCHHHH
Confidence            2 2334446789999999964

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.96  E-value=3.9e-29  Score=193.90  Aligned_cols=169  Identities=18%  Similarity=0.244  Sum_probs=142.5

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      +|+..+.||+|+||.||++... +++.+|+|.+....   ......+.+|+++++.++|++++++.+.+..       ++
T Consensus         1 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~-------~~   73 (285)
T cd05632           1 TFRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYET-------KD   73 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEec-------CC
Confidence            4777889999999999999975 78999999986542   2223457789999999999999999887754       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..++++||+.+++|.+++..... ..+++..+..++.|++.||.|||+   .+|+|+||+|+||++++++.++|+|||++
T Consensus        74 ~~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~ql~~~l~~lH~---~~iiH~dikp~Nili~~~~~~kl~Dfg~~  149 (285)
T cd05632          74 ALCLVLTIMNGGDLKFHIYNMGN-PGFEEERALFYAAEILCGLEDLHR---ENTVYRDLKPENILLDDYGHIRISDLGLA  149 (285)
T ss_pred             EEEEEEEeccCccHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCCHHHEEECCCCCEEEecCCcc
Confidence            89999999999999988865322 458999999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccccccccccCccccCCCCC
Q 028629          181 LLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      .............++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~g~~~~~aPE~~  173 (285)
T cd05632         150 VKIPEGESIRGRVGTVGYMAPEVL  173 (285)
T ss_pred             eecCCCCcccCCCCCcCccChHHh
Confidence            766544334446788999999975

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.96  E-value=2.5e-29  Score=198.25  Aligned_cols=162  Identities=20%  Similarity=0.335  Sum_probs=133.3

Q ss_pred             ceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHH-HHhccCCCceeeeccccccccccCCCCceEEE
Q 028629           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIE-LISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~-~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +.||+|+||.||+|... +++.||+|.+....   ......+..|.. +++.++|+||+++++.+..       .+..++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~-------~~~~~l   73 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQT-------ADKLYF   73 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEe-------CCEEEE
Confidence            46899999999999976 79999999997532   222334455544 5678899999999987754       568999


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      +|||+++++|..++...   ..+++.....++.|++.||.|||+   .+++||||||+|||+++++.++|+|||++....
T Consensus        74 v~e~~~~g~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~  147 (323)
T cd05575          74 VLDYVNGGELFFHLQRE---RSFPEPRARFYAAEIASALGYLHS---LNIIYRDLKPENILLDSQGHVVLTDFGLCKEGI  147 (323)
T ss_pred             EEcCCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCHHHeEECCCCcEEEeccCCCcccc
Confidence            99999999999988765   458899999999999999999999   799999999999999999999999999987542


Q ss_pred             c-cccccccccCccccCCCCC
Q 028629          185 N-AEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       185 ~-~~~~~~~~~~~~y~aPE~~  204 (206)
                      . ........++..|+|||..
T Consensus       148 ~~~~~~~~~~gt~~y~aPE~~  168 (323)
T cd05575         148 EHSKTTSTFCGTPEYLAPEVL  168 (323)
T ss_pred             cCCCccccccCChhhcChhhh
Confidence            2 2333445789999999974

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.96  E-value=4e-29  Score=193.10  Aligned_cols=162  Identities=18%  Similarity=0.290  Sum_probs=136.2

Q ss_pred             eccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEEEe
Q 028629           32 MGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE  107 (206)
Q Consensus        32 lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e  107 (206)
                      ||+|+||.||++... +|+.||+|.+....   .........|++++++++|+||+++.+.+..       ....+++||
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~-------~~~~~lv~e   73 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFES-------KTHLCLVMS   73 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEec-------CCeEEEEEe
Confidence            689999999999976 79999999986432   1223345679999999999999999888754       567999999


Q ss_pred             ecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccccc
Q 028629          108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE  187 (206)
Q Consensus       108 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~  187 (206)
                      |+++++|.+++..... ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++.......
T Consensus        74 ~~~g~~L~~~~~~~~~-~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~  149 (277)
T cd05607          74 LMNGGDLKYHIYNVGE-RGLEMERVIHYSAQITCGILHLHS---MDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGK  149 (277)
T ss_pred             cCCCCCHHHHHHhccc-cCCCHHHHHHHHHHHHHHHHHHHH---CCEEEccCChHhEEEcCCCCEEEeeceeeeecCCCc
Confidence            9999999988765432 458899999999999999999999   799999999999999999999999999998776544


Q ss_pred             cccccccCccccCCCCC
Q 028629          188 KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       188 ~~~~~~~~~~y~aPE~~  204 (206)
                      ......++..|+|||..
T Consensus       150 ~~~~~~~~~~y~aPE~~  166 (277)
T cd05607         150 TITQRAGTNGYMAPEIL  166 (277)
T ss_pred             eeeccCCCCCccCHHHH
Confidence            44446788899999964

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.96  E-value=2.5e-29  Score=198.35  Aligned_cols=167  Identities=21%  Similarity=0.286  Sum_probs=138.3

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccC-CCceeeeccccccccccCCCC
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      +|...+.||+|+||.||+|... +++.||+|.+....   ....+.+..|..++..+. |++++++.+.+..       .
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-------~   73 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQT-------V   73 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEec-------C
Confidence            4778899999999999999976 78999999997542   233455677888888886 5677778777654       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +..+++|||+++++|.+++...   ..+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||+
T Consensus        74 ~~~~lv~Ey~~~g~L~~~i~~~---~~l~~~~~~~i~~qi~~al~~lH~---~~ivHrDikp~Nill~~~~~ikL~Dfg~  147 (323)
T cd05615          74 DRLYFVMEYVNGGDLMYHIQQV---GKFKEPQAVFYAAEISVGLFFLHR---RGIIYRDLKLDNVMLDSEGHIKIADFGM  147 (323)
T ss_pred             CEEEEEEcCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEEecccc
Confidence            6799999999999999988765   458899999999999999999999   7999999999999999999999999999


Q ss_pred             ccccccc-ccccccccCccccCCCCC
Q 028629          180 PLLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      ++..... .......++..|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~gt~~y~aPE~~  173 (323)
T cd05615         148 CKEHMVDGVTTRTFCGTPDYIAPEII  173 (323)
T ss_pred             ccccCCCCccccCccCCccccCHHHH
Confidence            9754322 223345688999999964

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=2.9e-29  Score=202.53  Aligned_cols=161  Identities=12%  Similarity=0.169  Sum_probs=136.7

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      ++|...+.||+|+||.||+|... +++.||+|...      ...+.+|++++++++||||+++++++..       ....
T Consensus        92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~------~~~~~~E~~il~~l~HpnIv~~~~~~~~-------~~~~  158 (391)
T PHA03212         92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ------RGGTATEAHILRAINHPSIIQLKGTFTY-------NKFT  158 (391)
T ss_pred             CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh------hhhhHHHHHHHHhCCCCCCCCEeEEEEE-------CCee
Confidence            67999999999999999999975 78999999654      2346789999999999999999998754       5678


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      ++++|++. ++|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+||++++++.++|+|||++..
T Consensus       159 ~lv~e~~~-~~L~~~l~~~---~~l~~~~~~~i~~qi~~aL~ylH~---~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~  231 (391)
T PHA03212        159 CLILPRYK-TDLYCYLAAK---RNIAICDILAIERSVLRAIQYLHE---NRIIHRDIKAENIFINHPGDVCLGDFGAACF  231 (391)
T ss_pred             EEEEecCC-CCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChHhEEEcCCCCEEEEeCCcccc
Confidence            99999995 5888887654   347899999999999999999999   7999999999999999999999999999975


Q ss_pred             cccc--ccccccccCccccCCCCC
Q 028629          183 AENA--EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       183 ~~~~--~~~~~~~~~~~y~aPE~~  204 (206)
                      ....  .......+|..|+|||..
T Consensus       232 ~~~~~~~~~~~~~gt~~y~aPE~~  255 (391)
T PHA03212        232 PVDINANKYYGWAGTIATNAPELL  255 (391)
T ss_pred             cccccccccccccCccCCCChhhh
Confidence            4322  222335789999999975

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.96  E-value=6.1e-29  Score=198.72  Aligned_cols=174  Identities=16%  Similarity=0.187  Sum_probs=141.8

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ...++|+..+.||+|+||.||++... ++..||+|.+....  ......+.+|+.+++.++|+||+++++++...... .
T Consensus        18 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~-~   96 (359)
T cd07876          18 TVLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSL-E   96 (359)
T ss_pred             hhhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCc-c
Confidence            34689999999999999999999975 78999999986432  33345678899999999999999999987541110 1


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      .....+++|||+++ ++.+.+..     .+++..+..++.|++.||.|||+   .+|+||||||+||+++.++.++|+||
T Consensus        97 ~~~~~~lv~e~~~~-~l~~~~~~-----~~~~~~~~~~~~qi~~~L~~LH~---~~ivHrDlkp~NIl~~~~~~~kl~Df  167 (359)
T cd07876          97 EFQDVYLVMELMDA-NLCQVIHM-----ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDF  167 (359)
T ss_pred             ccceeEEEEeCCCc-CHHHHHhc-----cCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEEecC
Confidence            12457999999976 66666543     37788899999999999999999   79999999999999999999999999


Q ss_pred             CccccccccccccccccCccccCCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |+++............++..|+|||..
T Consensus       168 g~a~~~~~~~~~~~~~~t~~y~aPE~~  194 (359)
T cd07876         168 GLARTACTNFMMTPYVVTRYYRAPEVI  194 (359)
T ss_pred             CCccccccCccCCCCcccCCCCCchhc
Confidence            999866544444446788899999964

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.96  E-value=3.6e-29  Score=197.73  Aligned_cols=162  Identities=22%  Similarity=0.301  Sum_probs=136.7

Q ss_pred             ceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCCceEEE
Q 028629           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +.||+|+||.||+|... ++..||+|++....   ....+.+.+|..++.++ +|++|+++++.+..       .+.+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~-------~~~~~l   73 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQT-------TSRLFL   73 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEe-------CCEEEE
Confidence            46899999999999976 68899999997542   23345677899998888 69999999988754       567999


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      +|||+++++|...+...   ..+++..+..++.|++.||.|||+   .+++||||||+||++++++.++|+|||++....
T Consensus        74 v~e~~~~~~L~~~~~~~---~~l~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~  147 (327)
T cd05617          74 VIEYVNGGDLMFHMQRQ---RKLPEEHARFYAAEICIALNFLHE---RGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGL  147 (327)
T ss_pred             EEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEeCCCCEEEeccccceecc
Confidence            99999999999888765   358999999999999999999999   799999999999999999999999999997532


Q ss_pred             -ccccccccccCccccCCCCC
Q 028629          185 -NAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       185 -~~~~~~~~~~~~~y~aPE~~  204 (206)
                       .........++..|+|||..
T Consensus       148 ~~~~~~~~~~gt~~y~aPE~~  168 (327)
T cd05617         148 GPGDTTSTFCGTPNYIAPEIL  168 (327)
T ss_pred             CCCCceecccCCcccCCHHHH
Confidence             22334446789999999964

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.96  E-value=3.4e-31  Score=198.31  Aligned_cols=167  Identities=19%  Similarity=0.352  Sum_probs=151.5

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      .-|.++.+||+|.+|.|+++.++ +|..+|||.+..+  .+.+++..|+.++++++.+.++++++.++.       ...+
T Consensus        33 EVFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~--sDLQEIIKEISIMQQC~S~yVVKYYGSYFK-------~sDL  103 (502)
T KOG0574|consen   33 EVFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD--TDLQEIIKEISIMQQCKSKYVVKYYGSYFK-------HSDL  103 (502)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc--chHHHHHHHHHHHHHcCCchhhhhhhhhcc-------CCce
Confidence            46889999999999999999987 7999999988644  456788999999999999999999998876       6679


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      |+|||||..|++.+++..++  +++++..+..+.+..+.||.|||.   ..-+|||||..|||++.+|..|++|||.|..
T Consensus       104 WIVMEYCGAGSiSDI~R~R~--K~L~E~EIs~iL~~TLKGL~YLH~---~~KIHRDIKAGNILLNT~G~AKLADFGVAGQ  178 (502)
T KOG0574|consen  104 WIVMEYCGAGSISDIMRARR--KPLSEQEISAVLRDTLKGLQYLHD---LKKIHRDIKAGNILLNTDGIAKLADFGVAGQ  178 (502)
T ss_pred             EeehhhcCCCcHHHHHHHhc--CCccHHHHHHHHHHHHhHHHHHHH---HHHHHhhcccccEEEcccchhhhhhccccch
Confidence            99999999999999998765  689999999999999999999999   8999999999999999999999999999987


Q ss_pred             cccc-ccccccccCccccCCCCC
Q 028629          183 AENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       183 ~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      ++.. .+.+.+.||+.+||||..
T Consensus       179 LTDTMAKRNTVIGTPFWMAPEVI  201 (502)
T KOG0574|consen  179 LTDTMAKRNTVIGTPFWMAPEVI  201 (502)
T ss_pred             hhhhHHhhCccccCcccccHHHH
Confidence            7654 577889999999999953

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.96  E-value=7e-29  Score=190.44  Aligned_cols=169  Identities=18%  Similarity=0.359  Sum_probs=145.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ..+|+..+.||+|+||.||+|... ++..|++|++..........+.+|+..+++++|+|++++++.+..       ...
T Consensus         8 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~-------~~~   80 (267)
T cd06646           8 QHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLS-------REK   80 (267)
T ss_pred             hhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEe-------CCE
Confidence            457999999999999999999975 788999999976555555678889999999999999999998865       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++||+++++|.+++...   ..+++..+..++.|++.|+.|||+   .+++|+|++|+||+++.++.++|+|||++.
T Consensus        81 ~~iv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nill~~~~~~~l~dfg~~~  154 (267)
T cd06646          81 LWICMEYCGGGSLQDIYHVT---GPLSELQIAYVCRETLQGLAYLHS---KGKMHRDIKGANILLTDNGDVKLADFGVAA  154 (267)
T ss_pred             EEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEECCCCCEEECcCccce
Confidence            89999999999999988754   458899999999999999999999   799999999999999999999999999998


Q ss_pred             cccccc-cccccccCccccCCCCC
Q 028629          182 LAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ...... ......++..|+|||..
T Consensus       155 ~~~~~~~~~~~~~~~~~y~~PE~~  178 (267)
T cd06646         155 KITATIAKRKSFIGTPYWMAPEVA  178 (267)
T ss_pred             eecccccccCccccCccccCHhHc
Confidence            664332 22335677889999964

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.96  E-value=7e-29  Score=192.51  Aligned_cols=169  Identities=18%  Similarity=0.255  Sum_probs=142.3

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC---ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      +|+..+.||+|+||.||++... +++.||+|.+.....   .....+.+|+.+++.++|++++++.+.+..       .+
T Consensus         1 ~f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~-------~~   73 (285)
T cd05630           1 TFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYET-------KD   73 (285)
T ss_pred             CceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEec-------CC
Confidence            4778889999999999999976 789999999864422   223456789999999999999999888754       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..+++|||+++++|.+++..... ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++
T Consensus        74 ~~~lv~e~~~g~~L~~~l~~~~~-~~l~~~~~~~~~~qi~~~l~~lH~---~~iiH~dikp~Nil~~~~~~~~l~Dfg~~  149 (285)
T cd05630          74 ALCLVLTLMNGGDLKFHIYHMGE-AGFEEGRAVFYAAEICCGLEDLHQ---ERIVYRDLKPENILLDDHGHIRISDLGLA  149 (285)
T ss_pred             EEEEEEEecCCCcHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCHHHEEECCCCCEEEeeccce
Confidence            79999999999999998865332 458899999999999999999999   89999999999999999999999999999


Q ss_pred             ccccccccccccccCccccCCCCC
Q 028629          181 LLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      .............++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~g~~~y~aPE~~  173 (285)
T cd05630         150 VHVPEGQTIKGRVGTVGYMAPEVV  173 (285)
T ss_pred             eecCCCccccCCCCCccccChHHH
Confidence            876544443445788999999975

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.1e-29  Score=197.92  Aligned_cols=172  Identities=20%  Similarity=0.396  Sum_probs=144.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhcc--CCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKL--RHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++....+.||+|.||+||+|.|+ |+.||+|++.   ..+.+.+++|.++.+.+  +|+||+.+++.-..   ++.+-.
T Consensus       210 arqI~L~e~IGkGRyGEVwrG~wr-Ge~VAVKiF~---srdE~SWfrEtEIYqTvmLRHENILgFIaaD~~---~~gs~T  282 (513)
T KOG2052|consen  210 ARQIVLQEIIGKGRFGEVWRGRWR-GEDVAVKIFS---SRDERSWFRETEIYQTVMLRHENILGFIAADNK---DNGSWT  282 (513)
T ss_pred             hheeEEEEEecCccccceeecccc-CCceEEEEec---ccchhhhhhHHHHHHHHHhccchhhhhhhcccc---CCCceE
Confidence            467788999999999999999998 8999999997   33456788888888876  89999998886533   122335


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCC-----CCceeccCCccccEEecCCCceeEc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGI-----VPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~-----~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                      .+|||++|.+.|||.+++..    .+++.+..+.++..++.||.+||-.+     +..|.|||||+.||||..++.+.|+
T Consensus       283 QLwLvTdYHe~GSL~DyL~r----~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IA  358 (513)
T KOG2052|consen  283 QLWLVTDYHEHGSLYDYLNR----NTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIA  358 (513)
T ss_pred             EEEEeeecccCCcHHHHHhh----ccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEe
Confidence            79999999999999999987    36999999999999999999999732     3469999999999999999999999


Q ss_pred             cCCcccccccc-----ccccccccCccccCCCCCC
Q 028629          176 SYNLPLLAENA-----EKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       176 df~~a~~~~~~-----~~~~~~~~~~~y~aPE~~~  205 (206)
                      |+|+|-.-.+.     ...+...||..|||||..+
T Consensus       359 DLGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLd  393 (513)
T KOG2052|consen  359 DLGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLD  393 (513)
T ss_pred             eceeeEEecccCCcccCCCCCccceeeccChHHhh
Confidence            99999654433     3566689999999999764

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.96  E-value=4.7e-29  Score=196.90  Aligned_cols=162  Identities=19%  Similarity=0.297  Sum_probs=132.1

Q ss_pred             ceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHH-HHHhccCCCceeeeccccccccccCCCCceEEE
Q 028629           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHI-ELISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~-~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +.||+|+||.||+|... ++..||+|++....   ......+..|. .+++.++|+||+++++.+..       .+..++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~-------~~~~~l   73 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQT-------ADKLYF   73 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEc-------CCeEEE
Confidence            46899999999999976 68899999997432   12223344444 45678899999999988765       568999


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      +|||+++++|.+++...   ..+.+.....++.|++.||.|||+   .+++||||||+||++++++.++|+|||+++...
T Consensus        74 v~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~qi~~~L~~lH~---~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~  147 (325)
T cd05602          74 VLDYINGGELFYHLQRE---RCFLEPRARFYAAEIASALGYLHS---LNIVYRDLKPENILLDSQGHIVLTDFGLCKENI  147 (325)
T ss_pred             EEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEECCCCCEEEccCCCCcccc
Confidence            99999999999988765   347788888999999999999999   799999999999999999999999999997542


Q ss_pred             -ccccccccccCccccCCCCC
Q 028629          185 -NAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       185 -~~~~~~~~~~~~~y~aPE~~  204 (206)
                       .........++..|+|||..
T Consensus       148 ~~~~~~~~~~gt~~y~aPE~~  168 (325)
T cd05602         148 EHNGTTSTFCGTPEYLAPEVL  168 (325)
T ss_pred             cCCCCcccccCCccccCHHHH
Confidence             22334446789999999964

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.96  E-value=6.3e-29  Score=195.46  Aligned_cols=162  Identities=24%  Similarity=0.346  Sum_probs=134.5

Q ss_pred             ceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCCceEEE
Q 028629           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +.||+|+||.||+|... +++.||+|.+....   .........|..++... +||||+++++++.+       .+..++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~-------~~~~~l   73 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQT-------KENLFF   73 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEe-------CCEEEE
Confidence            46899999999999976 68899999997542   23344566677777764 89999999998765       567999


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      +|||+++++|.+++...   ..+++.....++.|++.||.|||+   .+++|+||||+||++++++.++|+|||++....
T Consensus        74 v~ey~~~g~L~~~l~~~---~~~~~~~~~~~~~qi~~al~~LH~---~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~  147 (316)
T cd05619          74 VMEYLNGGDLMFHIQSC---HKFDLPRATFYAAEIICGLQFLHS---KGIVYRDLKLDNILLDTDGHIKIADFGMCKENM  147 (316)
T ss_pred             EEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCHHHEEECCCCCEEEccCCcceECC
Confidence            99999999999998765   357889999999999999999999   799999999999999999999999999987532


Q ss_pred             c-cccccccccCccccCCCCC
Q 028629          185 N-AEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       185 ~-~~~~~~~~~~~~y~aPE~~  204 (206)
                      . ........++..|+|||..
T Consensus       148 ~~~~~~~~~~gt~~y~aPE~~  168 (316)
T cd05619         148 LGDAKTCTFCGTPDYIAPEIL  168 (316)
T ss_pred             CCCCceeeecCCccccCHHHH
Confidence            2 2233446789999999964

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.96  E-value=5.1e-29  Score=191.18  Aligned_cols=169  Identities=18%  Similarity=0.352  Sum_probs=145.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      .++|...+.||+|+||.||+|... ++..|++|.++.........+.+|+.+++.++|+|++++++.+..       .+.
T Consensus         8 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~-------~~~   80 (267)
T cd06645           8 QEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLR-------RDK   80 (267)
T ss_pred             HHHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEe-------CCE
Confidence            457899999999999999999965 789999999976655555667889999999999999999998765       568


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++||+++++|.+++...   ..+++..++.++.|++.++.|||+   .+++|+||+|+||+++.++.++|+|||++.
T Consensus        81 ~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nili~~~~~~~l~dfg~~~  154 (267)
T cd06645          81 LWICMEFCGGGSLQDIYHVT---GPLSESQIAYVSRETLQGLYYLHS---KGKMHRDIKGANILLTDNGHVKLADFGVSA  154 (267)
T ss_pred             EEEEEeccCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEECcceeee
Confidence            99999999999999988765   458899999999999999999999   799999999999999999999999999987


Q ss_pred             ccccc-ccccccccCccccCCCCC
Q 028629          182 LAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      ..... .......++..|+|||..
T Consensus       155 ~~~~~~~~~~~~~~~~~y~aPE~~  178 (267)
T cd06645         155 QITATIAKRKSFIGTPYWMAPEVA  178 (267)
T ss_pred             EccCcccccccccCcccccChhhh
Confidence            65432 223345788899999964

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.96  E-value=7.9e-29  Score=192.53  Aligned_cols=166  Identities=22%  Similarity=0.366  Sum_probs=144.7

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ++|+..+.||+|++|.||++... +++.+|+|++....   ....+.+.+|++++++++|+||+++++.+..       .
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~   73 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQD-------D   73 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEc-------C
Confidence            46889999999999999999976 68999999986432   2334678889999999999999999998865       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...+++|||+++++|.+++...   ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||+
T Consensus        74 ~~~~~v~e~~~~~~L~~~~~~~---~~l~~~~~~~~~~qil~~l~~lH~---~~i~H~dl~p~nili~~~~~~kl~dfg~  147 (290)
T cd05580          74 SNLYLVMEYVPGGELFSHLRKS---GRFPEPVARFYAAQVVLALEYLHS---LDIVYRDLKPENLLLDSDGYIKITDFGF  147 (290)
T ss_pred             CeEEEEEecCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEECCCCCEEEeeCCC
Confidence            6899999999999999998776   458899999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +......  .....++..|+|||..
T Consensus       148 ~~~~~~~--~~~~~~~~~y~aPE~~  170 (290)
T cd05580         148 AKRVKGR--TYTLCGTPEYLAPEII  170 (290)
T ss_pred             ccccCCC--CCCCCCCccccChhhh
Confidence            9877554  3345788899999975

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.96  E-value=5.3e-29  Score=203.85  Aligned_cols=174  Identities=13%  Similarity=0.209  Sum_probs=138.6

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCC-CCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS-SVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~-~~~  100 (206)
                      ..+|...+.||+|+||.||+|... ++..||+|.+....    ....+|+.+++.++|+||+++.+++....+... ...
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~----~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~  140 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP----QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNI  140 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCce
Confidence            357999999999999999999975 78899999886432    223469999999999999999887654322221 223


Q ss_pred             eEEEEEeecCCCCHHHHHhcC-CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC-CceeEccCC
Q 028629          101 RIFLIFEYVPNGTLRSWISEG-HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN-LVAKISSYN  178 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~-~~~kl~df~  178 (206)
                      .++++|||+++ ++.+++... .....+++..++.++.|++.||.|||+   .+|+||||||+|||++.+ +.+||+|||
T Consensus       141 ~l~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~---~~IiHrDLKp~NILl~~~~~~vkL~DFG  216 (440)
T PTZ00036        141 FLNVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHS---KFICHRDLKPQNLLIDPNTHTLKLCDFG  216 (440)
T ss_pred             EEEEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCcCHHHEEEcCCCCceeeeccc
Confidence            57799999975 777666431 111568899999999999999999999   799999999999999965 479999999


Q ss_pred             ccccccccccccccccCccccCCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +|+............+++.|+|||..
T Consensus       217 la~~~~~~~~~~~~~~t~~y~aPE~~  242 (440)
T PTZ00036        217 SAKNLLAGQRSVSYICSRFYRAPELM  242 (440)
T ss_pred             cchhccCCCCcccCCCCcCccCHHHh
Confidence            99877655544556788999999964

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.96  E-value=6.4e-29  Score=195.41  Aligned_cols=162  Identities=20%  Similarity=0.329  Sum_probs=134.5

Q ss_pred             ceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCCceEEE
Q 028629           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +.||+|+||.||+|... ++..||+|.++...   .........|..++... +|++|+++++.+..       .+..++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-------~~~~~l   73 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQT-------KEHLFF   73 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEe-------CCEEEE
Confidence            46899999999999976 78999999997542   22344566777777654 89999999988765       568999


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      +|||+.+++|...+...   ..+++.....++.|++.||.|||+   .+++||||||+||++++++.++|+|||+++...
T Consensus        74 v~E~~~~g~L~~~i~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~  147 (316)
T cd05620          74 VMEFLNGGDLMFHIQDK---GRFDLYRATFYAAEIVCGLQFLHS---KGIIYRDLKLDNVMLDRDGHIKIADFGMCKENV  147 (316)
T ss_pred             EECCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeEECCCCCEEeCccCCCeecc
Confidence            99999999999988765   357889999999999999999999   799999999999999999999999999987432


Q ss_pred             c-cccccccccCccccCCCCC
Q 028629          185 N-AEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       185 ~-~~~~~~~~~~~~y~aPE~~  204 (206)
                      . ........++..|+|||..
T Consensus       148 ~~~~~~~~~~gt~~y~aPE~~  168 (316)
T cd05620         148 FGDNRASTFCGTPDYIAPEIL  168 (316)
T ss_pred             cCCCceeccCCCcCccCHHHH
Confidence            2 2233446789999999964

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.96  E-value=1.7e-28  Score=190.23  Aligned_cols=173  Identities=20%  Similarity=0.340  Sum_probs=139.3

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhcc---CCCceeeeccccccccccCCC
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKL---RHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l---~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      +|+..+.||+|+||.||+|... +++.||+|.+....  ........+|+.+++.+   +|+||+++++++.....  ..
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~--~~   78 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRT--DR   78 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccC--CC
Confidence            5888999999999999999976 78999999987543  22233456677766665   79999999998754221  22


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ....++++|++.+ +|.+++..... ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||
T Consensus        79 ~~~~~lv~e~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dikp~Nili~~~~~~kl~dfg  153 (288)
T cd07863          79 ETKVTLVFEHVDQ-DLRTYLDKVPP-PGLPAETIKDLMRQFLRGLDFLHA---NCIVHRDLKPENILVTSGGQVKLADFG  153 (288)
T ss_pred             CceEEEEEccccc-CHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEECccC
Confidence            4568999999975 88888876432 458999999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccccccccccCccccCCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ++.............++..|+|||..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~y~aPE~~  179 (288)
T cd07863         154 LARIYSCQMALTPVVVTLWYRAPEVL  179 (288)
T ss_pred             ccccccCcccCCCccccccccCchHh
Confidence            99877654444445678899999964

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.96  E-value=1.2e-28  Score=193.19  Aligned_cols=169  Identities=15%  Similarity=0.313  Sum_probs=141.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|...+.||+|+||.||+|... ++..||+|.++... ......+.+|+.++++++|+||+++++++..       .+
T Consensus         5 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~   77 (309)
T cd07872           5 METYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHT-------DK   77 (309)
T ss_pred             CCceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEee-------CC
Confidence            467999999999999999999976 78899999987543 2233467789999999999999999998865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..+++|||+++ +|.+.+....  ..+++..+..++.|++.||.|||+   .+++||||+|+||++++++.++|+|||++
T Consensus        78 ~~~lv~e~~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~aL~~lH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~  151 (309)
T cd07872          78 SLTLVFEYLDK-DLKQYMDDCG--NIMSMHNVKIFLYQILRGLAYCHR---RKVLHRDLKPQNLLINERGELKLADFGLA  151 (309)
T ss_pred             eEEEEEeCCCC-CHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEECccccc
Confidence            79999999976 8888776543  357889999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccc-cccccccCccccCCCCC
Q 028629          181 LLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ....... ......++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~y~aPE~~  176 (309)
T cd07872         152 RAKSVPTKTYSNEVVTLWYRPPDVL  176 (309)
T ss_pred             eecCCCccccccccccccccCCHHH
Confidence            7654322 22334678899999964

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.96  E-value=3.5e-29  Score=203.22  Aligned_cols=166  Identities=19%  Similarity=0.268  Sum_probs=143.5

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccC------CCceeeeccccccccccC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLR------HCHLVSALGHCFECYFDD   96 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~------h~~i~~~~~~~~~~~~~~   96 (206)
                      -+|.+.+.||+|+||+|.+|... +++.||||+++.. .....+-..|+.+|..++      .-|+++++++|..     
T Consensus       186 ~rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~-k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~f-----  259 (586)
T KOG0667|consen  186 YRYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNK-KRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYF-----  259 (586)
T ss_pred             EEEEEEEEecccccceeEEEEecCCCcEEEEEeeccC-hHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeecccc-----
Confidence            48899999999999999999966 8999999999854 445566777999999995      3589999999976     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC--CceeE
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN--LVAKI  174 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~--~~~kl  174 (206)
                        .+.+|||+|.++. +|.++++.+.. ..++...+..++.||+.||.+||+   .+|||.||||+|||+.+.  ..+||
T Consensus       260 --r~HlciVfELL~~-NLYellK~n~f-~Glsl~~ir~~~~Qil~~L~~L~~---l~IIHcDLKPENILL~~~~r~~vKV  332 (586)
T KOG0667|consen  260 --RNHLCIVFELLST-NLYELLKNNKF-RGLSLPLVRKFAQQILTALLFLHE---LGIIHCDLKPENILLKDPKRSRIKV  332 (586)
T ss_pred             --ccceeeeehhhhh-hHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCChhheeeccCCcCceeE
Confidence              7889999999965 99999987655 679999999999999999999999   799999999999999854  58999


Q ss_pred             ccCCccccccccccccccccCccccCCCCC
Q 028629          175 SSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       175 ~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +|||.|......-  ..+..++.|+|||-.
T Consensus       333 IDFGSSc~~~q~v--ytYiQSRfYRAPEVI  360 (586)
T KOG0667|consen  333 IDFGSSCFESQRV--YTYIQSRFYRAPEVI  360 (586)
T ss_pred             EecccccccCCcc--eeeeeccccccchhh
Confidence            9999998776432  257888999999964

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.96  E-value=7.1e-29  Score=213.35  Aligned_cols=171  Identities=16%  Similarity=0.283  Sum_probs=141.5

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ++|+..+.||+|+||.||+|... +++.||+|.+....   ....+++.+|++++++++||||+++++++..       .
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d-------~   74 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSD-------G   74 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEee-------C
Confidence            67999999999999999999976 68999999987432   2234578899999999999999999998865       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCC--------CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGH--------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV  171 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~  171 (206)
                      +..+++|||+++++|.+++....        .....++..++.++.|++.||.|||+   .+++||||||+||+++.++.
T Consensus        75 ~~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs---~GIIHRDLKPeNILLd~dg~  151 (932)
T PRK13184         75 DPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHS---KGVLHRDLKPDNILLGLFGE  151 (932)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHH---CCccccCCchheEEEcCCCC
Confidence            67999999999999999886421        01235667888999999999999999   79999999999999999999


Q ss_pred             eeEccCCcccccccc-------------------ccccccccCccccCCCCC
Q 028629          172 AKISSYNLPLLAENA-------------------EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       172 ~kl~df~~a~~~~~~-------------------~~~~~~~~~~~y~aPE~~  204 (206)
                      ++|+|||++......                   .......||+.|+|||..
T Consensus       152 vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l  203 (932)
T PRK13184        152 VVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERL  203 (932)
T ss_pred             EEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCHHHh
Confidence            999999999865211                   112235689999999974

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.96  E-value=6.7e-29  Score=198.20  Aligned_cols=174  Identities=16%  Similarity=0.186  Sum_probs=143.1

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ...++|+..+.||+|+||.||++... ++..||+|.+....  ......+.+|+.+++.++|+||+++++++...... .
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~-~   92 (355)
T cd07874          14 TVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSL-E   92 (355)
T ss_pred             hhhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccc-c
Confidence            45689999999999999999999965 68899999987542  23345778899999999999999999987542111 1


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      .....+++|||+++ ++.+.+..     .+++..++.++.|++.||.|||+   .+++||||||+||++++++.++|+||
T Consensus        93 ~~~~~~lv~e~~~~-~l~~~~~~-----~l~~~~~~~~~~qi~~aL~~LH~---~givHrDikp~Nill~~~~~~kl~Df  163 (355)
T cd07874          93 EFQDVYLVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDF  163 (355)
T ss_pred             ccceeEEEhhhhcc-cHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChHHEEECCCCCEEEeeC
Confidence            23457999999976 67766653     37888899999999999999999   79999999999999999999999999


Q ss_pred             CccccccccccccccccCccccCCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |+++............++..|+|||..
T Consensus       164 g~~~~~~~~~~~~~~~~t~~y~aPE~~  190 (355)
T cd07874         164 GLARTAGTSFMMTPYVVTRYYRAPEVI  190 (355)
T ss_pred             cccccCCCccccCCccccCCccCHHHH
Confidence            999877655444556788999999964

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.96  E-value=8.8e-29  Score=194.57  Aligned_cols=169  Identities=20%  Similarity=0.359  Sum_probs=139.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCc----EEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGT----FIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~----~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      .++|+..+.||+|+||.||+|.+. ++.    .||+|.+.... ....+++.+|+.+++.++|+||+++++++..     
T Consensus         6 ~~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~-----   80 (316)
T cd05108           6 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT-----   80 (316)
T ss_pred             hhhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcC-----
Confidence            457999999999999999999964 444    38999886443 3445678899999999999999999998864     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                         ...++++|++++|+|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||||+||++++++.++|+|
T Consensus        81 ---~~~~~v~e~~~~g~l~~~l~~~~--~~~~~~~~~~~~~qi~~~L~~LH~---~~iiH~dlkp~Nill~~~~~~kl~D  152 (316)
T cd05108          81 ---STVQLITQLMPFGCLLDYVREHK--DNIGSQYLLNWCVQIAKGMNYLEE---RRLVHRDLAARNVLVKTPQHVKITD  152 (316)
T ss_pred             ---CCceeeeecCCCCCHHHHHHhcc--ccCCHHHHHHHHHHHHHHHHHHHh---cCeeccccchhheEecCCCcEEEcc
Confidence               34678999999999999987643  357889999999999999999999   7999999999999999999999999


Q ss_pred             CCccccccccccccc---cccCccccCCCCC
Q 028629          177 YNLPLLAENAEKVGH---VTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~~~~~~---~~~~~~y~aPE~~  204 (206)
                      ||+++..........   ...+..|+|||..
T Consensus       153 fG~a~~~~~~~~~~~~~~~~~~~~y~apE~~  183 (316)
T cd05108         153 FGLAKLLGADEKEYHAEGGKVPIKWMALESI  183 (316)
T ss_pred             ccccccccCCCcceeccCCccceeecChHHh
Confidence            999987654332211   2234579999975

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.96  E-value=6.2e-29  Score=189.67  Aligned_cols=166  Identities=21%  Similarity=0.442  Sum_probs=142.3

Q ss_pred             CcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHH--HHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           26 FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTR--NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~--~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      |+..+.||+|+||.||++... +++.+|+|.+.........  ....|+.++++++|+||+++.+++..       ....
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-------~~~~   73 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQD-------DNYL   73 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEE-------SSEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccccccccccccccccc-------cccc
Confidence            677899999999999999987 6779999999866433222  33559999999999999999998876       6789


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      +++||++.+++|.+++...   ..+++..++.++.|++.||.+||+   .+++|+||+|+||++++++.++|+|||.+..
T Consensus        74 ~~v~~~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~L~~Lh~---~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~  147 (260)
T PF00069_consen   74 YIVMEYCPGGSLQDYLQKN---KPLSEEEILKIAYQILEALAYLHS---KGIVHRDIKPENILLDENGEVKLIDFGSSVK  147 (260)
T ss_dssp             EEEEEEETTEBHHHHHHHH---SSBBHHHHHHHHHHHHHHHHHHHH---TTEEESSBSGGGEEESTTSEEEESSGTTTEE
T ss_pred             ccccccccccccccccccc---cccccccccccccccccccccccc---ccccccccccccccccccccccccccccccc
Confidence            9999999999999999843   458999999999999999999999   7999999999999999999999999999986


Q ss_pred             c-cccccccccccCccccCCCCC
Q 028629          183 A-ENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       183 ~-~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      . ..........++..|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~~y~aPE~~  170 (260)
T PF00069_consen  148 LSENNENFNPFVGTPEYMAPEVL  170 (260)
T ss_dssp             STSTTSEBSSSSSSGGGSCHHHH
T ss_pred             ccccccccccccccccccccccc
Confidence            3 333455557888899999964

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.96  E-value=1.1e-28  Score=190.88  Aligned_cols=163  Identities=18%  Similarity=0.265  Sum_probs=135.1

Q ss_pred             eccCcceeEEEEEEe-CCcEEEEEEeecCCC---ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEEEe
Q 028629           32 MGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE  107 (206)
Q Consensus        32 lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e  107 (206)
                      ||+|+||.||++... +++.+|+|.+.....   ...+.+..|+.+++.++|+|++++.+++..       ....+++||
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~-------~~~~~lv~e   73 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQT-------KTDLCLVMT   73 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcC-------CCeEEEEEe
Confidence            689999999999976 789999999874422   223456789999999999999999887754       567999999


Q ss_pred             ecCCCCHHHHHhcC-CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccccc
Q 028629          108 YVPNGTLRSWISEG-HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENA  186 (206)
Q Consensus       108 ~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~  186 (206)
                      |+++++|...+... .....+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++......
T Consensus        74 ~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~  150 (280)
T cd05608          74 IMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQ---RRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDG  150 (280)
T ss_pred             CCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEeeCccceecCCC
Confidence            99999998877432 122468999999999999999999999   79999999999999999999999999999766443


Q ss_pred             c-cccccccCccccCCCCC
Q 028629          187 E-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       187 ~-~~~~~~~~~~y~aPE~~  204 (206)
                      . ......++..|+|||..
T Consensus       151 ~~~~~~~~g~~~y~aPE~~  169 (280)
T cd05608         151 QSKTKGYAGTPGFMAPELL  169 (280)
T ss_pred             CccccccCCCcCccCHHHh
Confidence            2 22335788899999964

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.96  E-value=3.5e-29  Score=199.34  Aligned_cols=163  Identities=15%  Similarity=0.272  Sum_probs=141.1

Q ss_pred             cceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEE
Q 028629           29 SAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI  105 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (206)
                      .+.||+|-||.||-|.++ +|+.||+|++++.+  .....++.+|+.+|++++||.|+.+.-.|.+       .+..++|
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET-------~ervFVV  641 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFET-------PERVFVV  641 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecC-------CceEEEE
Confidence            568999999999999987 89999999998653  4455789999999999999999998777754       7789999


Q ss_pred             EeecCCCCHHH-HHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC---CceeEccCCccc
Q 028629          106 FEYVPNGTLRS-WISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN---LVAKISSYNLPL  181 (206)
Q Consensus       106 ~e~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~---~~~kl~df~~a~  181 (206)
                      ||-+.| +..+ ++....  ..+++.....+..||+.||.|||.   .+|+|.||||+|+|+.+.   ..+||||||+|+
T Consensus       642 MEKl~G-DMLEMILSsEk--gRL~er~TkFlvtQIL~ALr~LH~---knIvHCDLKPENVLLas~~~FPQvKlCDFGfAR  715 (888)
T KOG4236|consen  642 MEKLHG-DMLEMILSSEK--GRLPERITKFLVTQILVALRYLHF---KNIVHCDLKPENVLLASASPFPQVKLCDFGFAR  715 (888)
T ss_pred             ehhhcc-hHHHHHHHhhc--ccchHHHHHHHHHHHHHHHHHhhh---cceeeccCCchheeeccCCCCCceeecccccee
Confidence            999966 5555 444433  458899999999999999999999   899999999999999844   589999999999


Q ss_pred             cccccccccccccCccccCCCCC
Q 028629          182 LAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ++.+..-...+.||+.|+|||..
T Consensus       716 iIgEksFRrsVVGTPAYLaPEVL  738 (888)
T KOG4236|consen  716 IIGEKSFRRSVVGTPAYLAPEVL  738 (888)
T ss_pred             ecchhhhhhhhcCCccccCHHHH
Confidence            99988777779999999999953

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.96  E-value=1.8e-28  Score=187.15  Aligned_cols=168  Identities=18%  Similarity=0.323  Sum_probs=140.3

Q ss_pred             cCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEE
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~  103 (206)
                      ++|+..+.||+|+||.||++.+.++..+++|.+... ......+.+|+.++++++|+|++++++++..       ....+
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~~~   75 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEG-AMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQ-------QKPLY   75 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccCceEEEEecccC-CccHHHHHHHHHHHHHCCCCCceeEEEEEcc-------CCCEE
Confidence            568889999999999999999877778999988633 3345678899999999999999999998754       55789


Q ss_pred             EEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccc
Q 028629          104 LIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  183 (206)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~  183 (206)
                      ++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||.+...
T Consensus        76 iv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~  150 (256)
T cd05114          76 IVTEFMENGCLLNYLRQRQ--GKLSKDMLLSMCQDVCEGMEYLER---NSFIHRDLAARNCLVSSTGVVKVSDFGMTRYV  150 (256)
T ss_pred             EEEEcCCCCcHHHHHHhCc--cCCCHHHHHHHHHHHHHHHHHHHH---CCccccccCcceEEEcCCCeEEECCCCCcccc
Confidence            9999999999999887543  347899999999999999999999   79999999999999999999999999999865


Q ss_pred             cccccc--cccccCccccCCCCC
Q 028629          184 ENAEKV--GHVTPYSGSINPTNS  204 (206)
Q Consensus       184 ~~~~~~--~~~~~~~~y~aPE~~  204 (206)
                      ......  ....++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~y~aPE~~  173 (256)
T cd05114         151 LDDEYTSSSGAKFPVKWSPPEVF  173 (256)
T ss_pred             CCCceeccCCCCCchhhCChhhc
Confidence            432211  112334579999975

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.96  E-value=1.6e-28  Score=190.07  Aligned_cols=172  Identities=20%  Similarity=0.381  Sum_probs=141.3

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-----CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-----NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-----~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .++|+..+.||+|+||.||++...     ++..|++|.+........+.+.+|++++++++|+|++++.+++..     .
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~   77 (284)
T cd05081           3 ERHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYS-----A   77 (284)
T ss_pred             cccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEcc-----C
Confidence            357889999999999999999742     578999999876555556788999999999999999999987654     1


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      .....++++||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+||
T Consensus        78 ~~~~~~lv~e~~~~~~L~~~l~~~~--~~l~~~~~~~~~~~l~~aL~~LH~---~~i~H~dlkp~nili~~~~~~~l~df  152 (284)
T cd05081          78 GRRNLRLVMEYLPYGSLRDYLQKHR--ERLDHRKLLLYASQICKGMEYLGS---KRYVHRDLATRNILVESENRVKIGDF  152 (284)
T ss_pred             CCCceEEEEEecCCCCHHHHHHhcC--cCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCCHhhEEECCCCeEEECCC
Confidence            2456899999999999999987542  358899999999999999999999   79999999999999999999999999


Q ss_pred             Cccccccccccc----cccccCccccCCCCC
Q 028629          178 NLPLLAENAEKV----GHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~----~~~~~~~~y~aPE~~  204 (206)
                      |++.........    ....++..|+|||..
T Consensus       153 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  183 (284)
T cd05081         153 GLTKVLPQDKEYYKVREPGESPIFWYAPESL  183 (284)
T ss_pred             cccccccCCCcceeecCCCCCceEeeCHHHh
Confidence            999876443211    111233459999964

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>PHA02988 hypothetical protein; Provisional

Probab=99.96  E-value=3.3e-28  Score=188.63  Aligned_cols=165  Identities=18%  Similarity=0.268  Sum_probs=137.7

Q ss_pred             cceeccCcceeEEEEEEeCCcEEEEEEeecCCCcc---HHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEE
Q 028629           29 SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHS---TRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI  105 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (206)
                      ...+++|+++.||+|.. +|+.||+|.+.......   .+.+.+|+.++++++|+||+++++++.+..   ......+++
T Consensus        25 ~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~---~~~~~~~lv  100 (283)
T PHA02988         25 SVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIV---DDLPRLSLI  100 (283)
T ss_pred             CeEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecc---cCCCceEEE
Confidence            36789999999999998 58899999997554333   466789999999999999999999875411   123468999


Q ss_pred             EeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccc
Q 028629          106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       106 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                      |||+++|+|.+++...   ..+++...+.++.|++.|+.|||+.  .+++||||+|+||++++++.+||+|||+++....
T Consensus       101 ~Ey~~~g~L~~~l~~~---~~~~~~~~~~i~~~i~~~l~~lH~~--~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~  175 (283)
T PHA02988        101 LEYCTRGYLREVLDKE---KDLSFKTKLDMAIDCCKGLYNLYKY--TNKPYKNLTSVSFLVTENYKLKIICHGLEKILSS  175 (283)
T ss_pred             EEeCCCCcHHHHHhhC---CCCChhHHHHHHHHHHHHHHHHHhc--CCCCCCcCChhhEEECCCCcEEEcccchHhhhcc
Confidence            9999999999999765   4588999999999999999999973  4888999999999999999999999999987654


Q ss_pred             cccccccccCccccCCCCC
Q 028629          186 AEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       186 ~~~~~~~~~~~~y~aPE~~  204 (206)
                      ..  ....++..|+|||..
T Consensus       176 ~~--~~~~~~~~y~aPE~~  192 (283)
T PHA02988        176 PP--FKNVNFMVYFSYKML  192 (283)
T ss_pred             cc--ccccCcccccCHHHh
Confidence            32  234677889999975

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.96  E-value=1.2e-28  Score=194.11  Aligned_cols=162  Identities=22%  Similarity=0.322  Sum_probs=135.7

Q ss_pred             ceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCCceEEE
Q 028629           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +.||+|+||.||++... ++..||+|.+....   ......+..|.+++..+ +|+||+++++++..       .+.+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~-------~~~~~l   73 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQT-------KDRLFF   73 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEc-------CCEEEE
Confidence            46899999999999976 68899999997542   23345567788888877 69999999998765       568999


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      +|||+++++|...+...   ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||+++...
T Consensus        74 v~e~~~~~~L~~~~~~~---~~l~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~  147 (318)
T cd05570          74 VMEYVNGGDLMFHIQRS---GRFDEPRARFYAAEIVLGLQFLHE---RGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGI  147 (318)
T ss_pred             EEcCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeEccCCCHHHeEECCCCcEEecccCCCeecC
Confidence            99999999999888765   358899999999999999999999   799999999999999999999999999987532


Q ss_pred             -ccccccccccCccccCCCCC
Q 028629          185 -NAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       185 -~~~~~~~~~~~~~y~aPE~~  204 (206)
                       .........++..|+|||..
T Consensus       148 ~~~~~~~~~~g~~~y~aPE~~  168 (318)
T cd05570         148 LGGVTTSTFCGTPDYIAPEIL  168 (318)
T ss_pred             cCCCcccceecCccccCHHHh
Confidence             22233345788999999964

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.96  E-value=1.5e-28  Score=188.06  Aligned_cols=171  Identities=20%  Similarity=0.373  Sum_probs=142.4

Q ss_pred             HhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ..++|+..+.||.|++|.||+|...++..||+|.++... ...+.+.+|++++++++|+|++++++++..       .+.
T Consensus         4 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~   75 (261)
T cd05068           4 DRTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGT-MDPKDFLAEAQIMKKLRHPKLIQLYAVCTL-------EEP   75 (261)
T ss_pred             chhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCc-ccHHHHHHHHHHHHHCCCCCccceeEEEec-------CCC
Confidence            356799999999999999999997777889999987443 345678899999999999999999998754       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++|++++++|.+++..... ..+++..+..++.|++.|+.+||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        76 ~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~  151 (261)
T cd05068          76 IYIVTELMKYGSLLEYLQGGAG-RALKLPQLIDMAAQVASGMAYLEA---QNYIHRDLAARNVLVGENNICKVADFGLAR  151 (261)
T ss_pred             eeeeeecccCCcHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCCcceEEEcCCCCEEECCcceEE
Confidence            8999999999999999876532 458899999999999999999999   799999999999999999999999999998


Q ss_pred             cccccccccc--cccCccccCCCCC
Q 028629          182 LAENAEKVGH--VTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~~~~~--~~~~~~y~aPE~~  204 (206)
                      ..........  ...+..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~y~aPE~~  176 (261)
T cd05068         152 VIKEDIYEAREGAKFPIKWTAPEAA  176 (261)
T ss_pred             EccCCcccccCCCcCceeccCcccc
Confidence            7653321111  1123479999964

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.96  E-value=3.1e-28  Score=186.74  Aligned_cols=170  Identities=18%  Similarity=0.273  Sum_probs=141.0

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-----CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-----SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ++|+..+.||+|+||.||.+... ++..|++|.+....     ....+.+.+|+.++++++|+||+++++.+.+     .
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~   76 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRD-----P   76 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEecc-----C
Confidence            57999999999999999999976 68999999886432     1224577889999999999999999987643     1


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      ....+++++||+++++|.+++...   ..+++.....++.|++.+|.+||+   .+++|+||+|+||++++++.++|+||
T Consensus        77 ~~~~~~~v~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~l~Df  150 (265)
T cd06652          77 MERTLSIFMEHMPGGSIKDQLKSY---GALTENVTRKYTRQILEGVSYLHS---NMIVHRDIKGANILRDSVGNVKLGDF  150 (265)
T ss_pred             CCceEEEEEEecCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEecCCCCEEECcC
Confidence            234688999999999999998765   347888899999999999999999   79999999999999999999999999


Q ss_pred             Ccccccccc----ccccccccCccccCCCCC
Q 028629          178 NLPLLAENA----EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~----~~~~~~~~~~~y~aPE~~  204 (206)
                      |++......    .......++..|+|||..
T Consensus       151 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  181 (265)
T cd06652         151 GASKRLQTICLSGTGMKSVTGTPYWMSPEVI  181 (265)
T ss_pred             ccccccccccccccccccCCCCccccChhhh
Confidence            999765421    122234677889999974

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=3.7e-28  Score=185.88  Aligned_cols=168  Identities=18%  Similarity=0.296  Sum_probs=142.2

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC-----ccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-----HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ++|...+.||+|++|.||.+... ++..+++|.+.....     .....+.+|++++++++|+||+++++++..      
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~------   75 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRD------   75 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEcc------
Confidence            57999999999999999999965 789999998864321     123567889999999999999999998865      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       ....++++|++++++|.+++...   ..+++.....++.|++.|+.+||+   .+++|+||+|+||++++++.++|+||
T Consensus        76 -~~~~~~v~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dl~p~nilv~~~~~~~l~df  148 (263)
T cd06625          76 -DETLSIFMEYMPGGSVKDQLKAY---GALTETVTRKYTRQILEGVEYLHS---NMIVHRDIKGANILRDSAGNVKLGDF  148 (263)
T ss_pred             -CCeEEEEEEECCCCcHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeec
Confidence             56899999999999999998765   458889999999999999999999   79999999999999999999999999


Q ss_pred             Cccccccccccc----cccccCccccCCCCC
Q 028629          178 NLPLLAENAEKV----GHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~----~~~~~~~~y~aPE~~  204 (206)
                      |+++........    ....++..|+|||..
T Consensus       149 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  179 (263)
T cd06625         149 GASKRLQTICSSGTGMKSVTGTPYWMSPEVI  179 (263)
T ss_pred             ccceeccccccccccccCCCcCccccCccee
Confidence            999765432211    234567789999975

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=1.8e-28  Score=195.98  Aligned_cols=164  Identities=10%  Similarity=0.171  Sum_probs=138.0

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ...+|...+.||+|+||.||+|... ++..||+|.....      ....|+.++++++|+||+++++++..       ..
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~------~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~  130 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG------TTLIEAMLLQNVNHPSVIRMKDTLVS-------GA  130 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc------ccHHHHHHHHhCCCCCCcChhheEEe-------CC
Confidence            3457999999999999999999976 6788999975422      23458999999999999999998865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..++++|++.+ +|.+++....  ..+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||++
T Consensus       131 ~~~lv~e~~~~-~l~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a  204 (357)
T PHA03209        131 ITCMVLPHYSS-DLYTYLTKRS--RPLPIDQALIIEKQILEGLRYLHA---QRIIHRDVKTENIFINDVDQVCIGDLGAA  204 (357)
T ss_pred             eeEEEEEccCC-cHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEEecCccc
Confidence            78999999954 8888776543  458999999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccccccccccCccccCCCCC
Q 028629          181 LLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +............++..|+|||..
T Consensus       205 ~~~~~~~~~~~~~gt~~y~aPE~~  228 (357)
T PHA03209        205 QFPVVAPAFLGLAGTVETNAPEVL  228 (357)
T ss_pred             cccccCcccccccccccccCCeec
Confidence            865443333446788999999975

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.96  E-value=2.1e-28  Score=190.92  Aligned_cols=169  Identities=16%  Similarity=0.305  Sum_probs=145.9

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ...+|+..+.||+|++|.||++... ++..||+|.+........+.+.+|+.+++.++|+|++++++.+..       ..
T Consensus        17 ~~~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-------~~   89 (297)
T cd06656          17 PKKKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-------GD   89 (297)
T ss_pred             hhhhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEec-------CC
Confidence            3578999999999999999999965 799999999976555556678889999999999999999998865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..++++||+++++|.+++..    ..+++..+..++.|++.+|.|||+   .+++|+||+|+||+++.++.++|+|||++
T Consensus        90 ~~~lv~e~~~~~~L~~~~~~----~~~~~~~~~~~~~~l~~~L~~LH~---~~i~H~dL~p~Nili~~~~~~~l~Dfg~~  162 (297)
T cd06656          90 ELWVVMEYLAGGSLTDVVTE----TCMDEGQIAAVCRECLQALDFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFC  162 (297)
T ss_pred             EEEEeecccCCCCHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEECcCccc
Confidence            89999999999999999865    347889999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccc-cccccccCccccCCCCC
Q 028629          181 LLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ....... ......++..|+|||..
T Consensus       163 ~~~~~~~~~~~~~~~~~~y~aPE~~  187 (297)
T cd06656         163 AQITPEQSKRSTMVGTPYWMAPEVV  187 (297)
T ss_pred             eEccCCccCcCcccCCccccCHHHH
Confidence            7654432 22335677889999965

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.96  E-value=9.1e-29  Score=198.82  Aligned_cols=174  Identities=21%  Similarity=0.324  Sum_probs=140.3

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCC-CccHHHHHHHHHHHhcc-CCCceeeeccccccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFEC   92 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~   92 (206)
                      ...++|+..+.||+|+||.||+|.+.      ++..||+|+++... ....+.+.+|+.+++.+ +||||+++++++.. 
T Consensus        32 ~~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~-  110 (375)
T cd05104          32 FPRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTV-  110 (375)
T ss_pred             cchHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeecc-
Confidence            34568999999999999999999741      35689999986443 33445788899999999 89999999998865 


Q ss_pred             cccCCCCceEEEEEeecCCCCHHHHHhcCCC-------------------------------------------------
Q 028629           93 YFDDSSVSRIFLIFEYVPNGTLRSWISEGHA-------------------------------------------------  123 (206)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-------------------------------------------------  123 (206)
                            .+..+++|||+++|+|.+++.....                                                 
T Consensus       111 ------~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  184 (375)
T cd05104         111 ------GGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKAD  184 (375)
T ss_pred             ------CCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccc
Confidence                  5678999999999999998864210                                                 


Q ss_pred             -----------------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          124 -----------------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       124 -----------------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                                             ...+++..++.++.|++.||.|||+   .+++|+||||+||++++++.++|+|||++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nill~~~~~~kl~DfG~a  261 (375)
T cd05104         185 KRRSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLAS---KNCIHRDLAARNILLTHGRITKICDFGLA  261 (375)
T ss_pred             cccccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCchhhEEEECCCcEEEecCccc
Confidence                                   1247888999999999999999999   79999999999999999999999999999


Q ss_pred             cccccccc---ccccccCccccCCCCC
Q 028629          181 LLAENAEK---VGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~~---~~~~~~~~~y~aPE~~  204 (206)
                      +.......   .....++..|+|||..
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~y~aPE~~  288 (375)
T cd05104         262 RDIRNDSNYVVKGNARLPVKWMAPESI  288 (375)
T ss_pred             eeccCcccccccCCCCCCcceeChhHh
Confidence            86643321   1122344579999964

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.96  E-value=2.2e-28  Score=190.72  Aligned_cols=168  Identities=17%  Similarity=0.314  Sum_probs=145.3

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ..+|...+.||+|++|.||++... ++..+++|.+..........+.+|+.+++.+.|+|++++.+.+..       ...
T Consensus        19 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~-------~~~   91 (296)
T cd06654          19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-------GDE   91 (296)
T ss_pred             ccceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEe-------CCE
Confidence            468999999999999999999965 788999999986655556778899999999999999999998765       568


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++||+++++|.+++..    ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        92 ~~lv~e~~~~~~L~~~~~~----~~~~~~~~~~i~~ql~~aL~~LH~---~gi~H~dLkp~Nill~~~~~~kl~dfg~~~  164 (296)
T cd06654          92 LWVVMEYLAGGSLTDVVTE----TCMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCA  164 (296)
T ss_pred             EEEeecccCCCCHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCCEEECccccch
Confidence            9999999999999998865    347889999999999999999999   799999999999999999999999999988


Q ss_pred             cccccc-cccccccCccccCCCCC
Q 028629          182 LAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ...... ......++..|+|||..
T Consensus       165 ~~~~~~~~~~~~~~~~~y~aPE~~  188 (296)
T cd06654         165 QITPEQSKRSTMVGTPYWMAPEVV  188 (296)
T ss_pred             hccccccccCcccCCccccCHHHH
Confidence            654322 22334677889999964

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.96  E-value=4.7e-29  Score=190.71  Aligned_cols=173  Identities=23%  Similarity=0.394  Sum_probs=146.6

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ....+|...+.||.|++|.||+|...++..+++|.+..........+..|+..++.++|+|++++++++..       ..
T Consensus         3 ~~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~   75 (261)
T cd05148           3 RPREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSV-------GE   75 (261)
T ss_pred             CcHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEec-------CC
Confidence            44567999999999999999999987788999999876655556788899999999999999999988755       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..+++|||+++++|.+++..... ..+++..++.++.|++.|+.|||+   .+++|+||+|+||++++++.++|+|||.+
T Consensus        76 ~~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~i~~al~~lH~---~~i~h~dl~~~nilv~~~~~~kl~d~g~~  151 (261)
T cd05148          76 PVYIITELMEKGSLLAFLRSPEG-QVLPVASLIDMACQVAEGMAYLEE---QNSIHRDLAARNILVGEDLVCKVADFGLA  151 (261)
T ss_pred             CeEEEEeecccCCHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccCcceEEEcCCceEEEccccch
Confidence            78999999999999999976433 458899999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccc-cccccccCccccCCCCC
Q 028629          181 LLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ....... ......++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~PE~~  176 (261)
T cd05148         152 RLIKEDVYLSSDKKIPYKWTAPEAA  176 (261)
T ss_pred             hhcCCccccccCCCCceEecCHHHH
Confidence            7664332 12223445679999964

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.4e-28  Score=194.62  Aligned_cols=160  Identities=16%  Similarity=0.235  Sum_probs=131.2

Q ss_pred             eccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhcc---CCCceeeeccccccccccCCCCceEEE
Q 028629           32 MGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL---RHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        32 lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l---~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      ||+|+||.||+|... ++..||+|++....   .........|..++...   .|++|++++..+..       ....++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~-------~~~~~l   73 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQT-------DSDLYL   73 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEec-------CCeEEE
Confidence            689999999999976 78999999996432   12223344566666555   69999999988755       567999


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      +|||+++++|..++...   ..+++..+..++.|++.||.|||+   .+|+||||||+|||+++++.++|+|||++....
T Consensus        74 v~e~~~~g~L~~~l~~~---~~~~~~~~~~~~~qil~al~~LH~---~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~  147 (330)
T cd05586          74 VTDYMSGGELFWHLQKE---GRFSEDRAKFYIAELVLALEHLHK---YDIVYRDLKPENILLDATGHIALCDFGLSKANL  147 (330)
T ss_pred             EEcCCCCChHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeEECCCCCEEEecCCcCcCCC
Confidence            99999999999888765   458899999999999999999999   799999999999999999999999999997543


Q ss_pred             -ccccccccccCccccCCCCC
Q 028629          185 -NAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       185 -~~~~~~~~~~~~~y~aPE~~  204 (206)
                       .........|+..|+|||..
T Consensus       148 ~~~~~~~~~~gt~~y~aPE~~  168 (330)
T cd05586         148 TDNKTTNTFCGTTEYLAPEVL  168 (330)
T ss_pred             CCCCCccCccCCccccCHHHH
Confidence             22334446789999999964

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=2.5e-30  Score=201.25  Aligned_cols=170  Identities=16%  Similarity=0.306  Sum_probs=151.5

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ....|...+.||+|.||.||+|... +++.||+|+++.+. .....++.+|+.++..++++||.++++.++.       +
T Consensus        11 ~~~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~-------g   83 (467)
T KOG0201|consen   11 PELLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLK-------G   83 (467)
T ss_pred             cccccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheee-------c
Confidence            3456888899999999999999965 89999999998775 4456788899999999999999999998886       7


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ..+|++|||+.||++.+.++..   ..+++..+..+.++++.|+.|+|.   .+.+|+|||+.||++..+|.+|++|||.
T Consensus        84 ~~LwiiMey~~gGsv~~lL~~~---~~~~E~~i~~ilre~l~~l~ylH~---~~kiHrDIKaanil~s~~g~vkl~DfgV  157 (467)
T KOG0201|consen   84 TKLWIIMEYCGGGSVLDLLKSG---NILDEFEIAVILREVLKGLDYLHS---EKKIHRDIKAANILLSESGDVKLADFGV  157 (467)
T ss_pred             ccHHHHHHHhcCcchhhhhccC---CCCccceeeeehHHHHHHhhhhhh---cceecccccccceeEeccCcEEEEecce
Confidence            7899999999999999999876   345888888899999999999999   8999999999999999999999999999


Q ss_pred             cccccccc-cccccccCccccCCCCC
Q 028629          180 PLLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      +...++.. +.....||+.|||||..
T Consensus       158 a~ql~~~~~rr~tfvGTPfwMAPEVI  183 (467)
T KOG0201|consen  158 AGQLTNTVKRRKTFVGTPFWMAPEVI  183 (467)
T ss_pred             eeeeechhhccccccccccccchhhh
Confidence            98876653 44778999999999964

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=3.5e-28  Score=185.82  Aligned_cols=171  Identities=19%  Similarity=0.364  Sum_probs=147.8

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      .++|...+.||.|++|.||+|... ++..+++|.+........+.+.+|++++++++|+|++++++.+..       ...
T Consensus         2 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-------~~~   74 (262)
T cd06613           2 QEDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLR-------RDK   74 (262)
T ss_pred             ccceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEe-------CCE
Confidence            467999999999999999999975 688999999986665566788999999999999999999998765       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      ++++|||+++++|.+++....  ..+++..++.++.|++.|+.|||+   .+++|+||+|+||++++++.++|+|||.+.
T Consensus        75 ~~l~~e~~~~~~l~~~~~~~~--~~l~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~  149 (262)
T cd06613          75 LWIVMEYCGGGSLQDIYQVTR--GPLSELQIAYVCRETLKGLAYLHE---TGKIHRDIKGANILLTEDGDVKLADFGVSA  149 (262)
T ss_pred             EEEEEeCCCCCcHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHh---CCceecCCChhhEEECCCCCEEECccccch
Confidence            999999999999999887642  358899999999999999999999   799999999999999999999999999998


Q ss_pred             cccccc-cccccccCccccCCCCCC
Q 028629          182 LAENAE-KVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       182 ~~~~~~-~~~~~~~~~~y~aPE~~~  205 (206)
                      ...... ......++..|+|||...
T Consensus       150 ~~~~~~~~~~~~~~~~~y~~Pe~~~  174 (262)
T cd06613         150 QLTATIAKRKSFIGTPYWMAPEVAA  174 (262)
T ss_pred             hhhhhhhccccccCCccccCchhhc
Confidence            765432 333456788899999753

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.96  E-value=9.1e-29  Score=199.39  Aligned_cols=171  Identities=15%  Similarity=0.289  Sum_probs=152.8

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .-...|.+.+.||+|.|+.|.++++. ++..||||.+++..  ....+.+.+|+++|..+.||||++++.+...      
T Consensus        53 ~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t------  126 (596)
T KOG0586|consen   53 NSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIET------  126 (596)
T ss_pred             ccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeee------
Confidence            44578999999999999999999977 89999999998654  2223458899999999999999999998865      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       ...+++||||+.++.+.+.+.+...   ..+.....++.|+..|+.|||+   ..|+|||||++|++++++.++||+||
T Consensus       127 -~~~lylV~eya~~ge~~~yl~~~gr---~~e~~ar~~F~q~vsaveYcH~---k~ivHrdLk~eNilL~~~mnikIaDf  199 (596)
T KOG0586|consen  127 -EATLYLVMEYASGGELFDYLVKHGR---MKEKEARAKFRQIVSAVEYCHS---KNIVHRDLKAENILLDENMNIKIADF  199 (596)
T ss_pred             -cceeEEEEEeccCchhHHHHHhccc---chhhhhhhhhHHHHHHHHHHhh---cceeccccchhhcccccccceeeecc
Confidence             6789999999999999999987643   5567888899999999999999   89999999999999999999999999


Q ss_pred             CccccccccccccccccCccccCCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |++..++........+|++.|.|||..
T Consensus       200 gfS~~~~~~~~lqt~cgsppyAaPEl~  226 (596)
T KOG0586|consen  200 GFSTFFDYGLMLQTFCGSPPYAAPELF  226 (596)
T ss_pred             ccceeecccccccccCCCCCccChHhh
Confidence            999999988888889999999999964

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.96  E-value=2.6e-28  Score=189.78  Aligned_cols=171  Identities=18%  Similarity=0.354  Sum_probs=145.5

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ..++|++.+.||.|++|.||+|... ++..+++|.+........+.+.+|+..++.++|+|++++.+.+..       .+
T Consensus        10 ~~~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~   82 (292)
T cd06644          10 PNEVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYW-------DG   82 (292)
T ss_pred             cchhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEe-------CC
Confidence            3467999999999999999999976 688999999976655566778899999999999999999998765       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..+++|||+++++|..++....  ..+++..++.++.|++.++.|||+   .+++|+||+|+||+++.++.++|+|||++
T Consensus        83 ~~~lv~e~~~~~~l~~~~~~~~--~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~dfg~~  157 (292)
T cd06644          83 KLWIMIEFCPGGAVDAIMLELD--RGLTEPQIQVICRQMLEALQYLHS---MKIIHRDLKAGNVLLTLDGDIKLADFGVS  157 (292)
T ss_pred             eEEEEEecCCCCcHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHhc---CCeeecCCCcceEEEcCCCCEEEccCccc
Confidence            7999999999999988775432  358899999999999999999999   79999999999999999999999999998


Q ss_pred             cccccc-ccccccccCccccCCCCC
Q 028629          181 LLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      ...... .......++..|+|||..
T Consensus       158 ~~~~~~~~~~~~~~~~~~y~aPE~~  182 (292)
T cd06644         158 AKNVKTLQRRDSFIGTPYWMAPEVV  182 (292)
T ss_pred             eeccccccccceecCCccccCceee
Confidence            754332 222335677889999974

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.96  E-value=1.4e-28  Score=188.24  Aligned_cols=171  Identities=20%  Similarity=0.368  Sum_probs=142.6

Q ss_pred             HhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ..++|+..+.||+|++|.||+|...++..|++|.+... ....+.+.+|+.+++.++|+|++++++.+..       ...
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~   75 (261)
T cd05072           4 PRESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPG-TMSVQAFLEEANLMKTLQHDKLVRLYAVVTK-------EEP   75 (261)
T ss_pred             chHHeEEeeecCCcCCceEEEEEecCCceEEEEEccCC-chhHHHHHHHHHHHHhCCCCCeeeEEEEEcC-------CCC
Confidence            35679999999999999999999777788999987643 3345678899999999999999999887754       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++|++++++|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        76 ~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~~l~~~l~~LH~---~~i~H~dl~p~nili~~~~~~~l~dfg~~~  151 (261)
T cd05072          76 IYIITEYMAKGSLLDFLKSDEG-GKVLLPKLIDFSAQIAEGMAYIER---KNYIHRDLRAANVLVSESLMCKIADFGLAR  151 (261)
T ss_pred             cEEEEecCCCCcHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccchhhEEecCCCcEEECCCccce
Confidence            8999999999999999875432 457888999999999999999999   799999999999999999999999999998


Q ss_pred             cccccccc--cccccCccccCCCCC
Q 028629          182 LAENAEKV--GHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~~~--~~~~~~~~y~aPE~~  204 (206)
                      ........  ....++..|+|||+.
T Consensus       152 ~~~~~~~~~~~~~~~~~~y~aPE~~  176 (261)
T cd05072         152 VIEDNEYTAREGAKFPIKWTAPEAI  176 (261)
T ss_pred             ecCCCceeccCCCccceecCCHHHh
Confidence            76543211  122345679999964

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.96  E-value=2.9e-28  Score=191.01  Aligned_cols=168  Identities=13%  Similarity=0.257  Sum_probs=143.1

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ++|+..+.||+|+||.||++... ++..+++|.+.... ......+.+|++++++++|+||+++++.+..       .+.
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~~   73 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYS-------DGE   73 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEee-------CCE
Confidence            46899999999999999999976 68889999886543 2234568889999999999999999998865       668


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++||+++++|.+++...   ..+++..+..++.|++.||.|||+.  .+++|+||+|+||++++++.++|+|||++.
T Consensus        74 ~~lv~ey~~~~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH~~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  148 (308)
T cd06615          74 ISICMEHMDGGSLDQVLKKA---GRIPENILGKISIAVLRGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSG  148 (308)
T ss_pred             EEEEeeccCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhh--CCEEECCCChHHEEEecCCcEEEccCCCcc
Confidence            99999999999999999765   4588999999999999999999973  489999999999999999999999999987


Q ss_pred             cccccccccccccCccccCCCCC
Q 028629          182 LAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ...... .....++..|+|||..
T Consensus       149 ~~~~~~-~~~~~~~~~~~aPE~~  170 (308)
T cd06615         149 QLIDSM-ANSFVGTRSYMSPERL  170 (308)
T ss_pred             cccccc-cccCCCCcCccChhHh
Confidence            654332 2335778899999964

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.96  E-value=1e-28  Score=198.47  Aligned_cols=174  Identities=21%  Similarity=0.341  Sum_probs=139.7

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCC-CccHHHHHHHHHHHhcc-CCCceeeeccccccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFEC   92 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~   92 (206)
                      -..++|+..+.||+|+||.||+|...      ++..||+|.+.... ......+.+|+.+++.+ .|+||+++++.+.. 
T Consensus        35 ~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~-  113 (374)
T cd05106          35 FPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTH-  113 (374)
T ss_pred             ccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecC-
Confidence            34567999999999999999999853      23579999997543 23345688899999999 89999999998865 


Q ss_pred             cccCCCCceEEEEEeecCCCCHHHHHhcCC--------------------------------------------------
Q 028629           93 YFDDSSVSRIFLIFEYVPNGTLRSWISEGH--------------------------------------------------  122 (206)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--------------------------------------------------  122 (206)
                            .+..+++|||+++++|.+++....                                                  
T Consensus       114 ------~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (374)
T cd05106         114 ------GGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPV  187 (374)
T ss_pred             ------CCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCc
Confidence                  567899999999999999875321                                                  


Q ss_pred             -----------------CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccc
Q 028629          123 -----------------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       123 -----------------~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                                       ....+++..++.++.|++.||.|||+   .+++||||||+||++++++.++|+|||+++....
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~---~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~  264 (374)
T cd05106         188 SSSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLAS---KNCIHRDVAARNVLLTDGRVAKICDFGLARDIMN  264 (374)
T ss_pred             cccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHH---CCEEeccCchheEEEeCCCeEEEeeceeeeeccC
Confidence                             01247788899999999999999999   7999999999999999999999999999986543


Q ss_pred             ccc---ccccccCccccCCCCC
Q 028629          186 AEK---VGHVTPYSGSINPTNS  204 (206)
Q Consensus       186 ~~~---~~~~~~~~~y~aPE~~  204 (206)
                      ...   .....++..|+|||..
T Consensus       265 ~~~~~~~~~~~~~~~y~aPE~~  286 (374)
T cd05106         265 DSNYVVKGNARLPVKWMAPESI  286 (374)
T ss_pred             CcceeeccCCCCccceeCHHHh
Confidence            321   1122345679999964

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.96  E-value=2.2e-28  Score=195.86  Aligned_cols=174  Identities=15%  Similarity=0.179  Sum_probs=142.6

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ...++|...+.||+|+||.||++... +++.||+|.+....  ......+.+|+.+++.++|+||+++++++...... .
T Consensus        21 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~-~   99 (364)
T cd07875          21 TVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSL-E   99 (364)
T ss_pred             chhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecccccc-c
Confidence            34689999999999999999999975 68899999987532  33346778899999999999999999876531110 1


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      .....+++|||+++ ++.+.+..     .+++..+..++.|++.||.|||+   .+|+||||||+||++++++.++|+||
T Consensus       100 ~~~~~~lv~e~~~~-~l~~~~~~-----~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~Df  170 (364)
T cd07875         100 EFQDVYIVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDF  170 (364)
T ss_pred             ccCeEEEEEeCCCC-CHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHhh---CCeecCCCCHHHEEECCCCcEEEEeC
Confidence            12468999999975 77777653     37788899999999999999999   79999999999999999999999999


Q ss_pred             CccccccccccccccccCccccCCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |+++............++..|+|||..
T Consensus       171 G~a~~~~~~~~~~~~~~t~~y~aPE~~  197 (364)
T cd07875         171 GLARTAGTSFMMTPYVVTRYYRAPEVI  197 (364)
T ss_pred             CCccccCCCCcccCCcccCCcCCHHHH
Confidence            999877655444446788999999964

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.96  E-value=2.8e-28  Score=188.88  Aligned_cols=188  Identities=14%  Similarity=0.213  Sum_probs=152.1

Q ss_pred             cceeCHHHHHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhcc-CCCceeeeccc
Q 028629           11 YRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGH   88 (206)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~   88 (206)
                      -+.++++.+..+.++|+..+.||+|++|.||++... ++..+++|.+... ......+.+|+.+++.+ +|+|++++++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~-~~~~~~~~~e~~~l~~l~~h~~i~~~~~~   83 (286)
T cd06638           5 GKTIIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPI-HDIDEEIEAEYNILKALSDHPNVVKFYGM   83 (286)
T ss_pred             CceEEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccc-cchHHHHHHHHHHHHHHhcCCCeeeeeee
Confidence            344666777788999999999999999999999975 6889999987643 22345677899999999 69999999998


Q ss_pred             cccccccCCCCceEEEEEeecCCCCHHHHHhcC-CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec
Q 028629           89 CFECYFDDSSVSRIFLIFEYVPNGTLRSWISEG-HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD  167 (206)
Q Consensus        89 ~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~  167 (206)
                      +.....  ..++..+++|||+++++|.+++... .....+++..++.++.|++.||.|||+   .+++|+||+|+||+++
T Consensus        84 ~~~~~~--~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nili~  158 (286)
T cd06638          84 YYKKDV--KNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHV---NKTIHRDVKGNNILLT  158 (286)
T ss_pred             eeeccc--CCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHh---CCccccCCCHHhEEEC
Confidence            753211  2245789999999999999987532 112457889999999999999999999   7999999999999999


Q ss_pred             CCCceeEccCCcccccccc-ccccccccCccccCCCCC
Q 028629          168 QNLVAKISSYNLPLLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       168 ~~~~~kl~df~~a~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      +++.++|+|||++...... .......++..|+|||..
T Consensus       159 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  196 (286)
T cd06638         159 TEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVI  196 (286)
T ss_pred             CCCCEEEccCCceeecccCCCccccccCCCcccChhhh
Confidence            9999999999999866432 233345688899999964

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.96  E-value=2e-28  Score=188.05  Aligned_cols=170  Identities=21%  Similarity=0.329  Sum_probs=139.8

Q ss_pred             hcCCcccceeccCcceeEEEEEEe----CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~----~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .++|+..+.||+|+||.||+|.+.    .+..||+|.++... ......+.+|+..+++++|+||+++++++..      
T Consensus         4 ~~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------   77 (266)
T cd05064           4 NKSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITR------   77 (266)
T ss_pred             hHHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEec------
Confidence            457899999999999999999853    35689999987543 2334568899999999999999999998764      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       .+..+++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++++||
T Consensus        78 -~~~~~lv~e~~~~~~L~~~l~~~~--~~l~~~~~~~~~~~i~~al~~lH~---~~iiH~dikp~nili~~~~~~~l~df  151 (266)
T cd05064          78 -GNTMMIVTEYMSNGALDSFLRKHE--GQLVAGQLMGMLPGLASGMKYLSE---MGYVHKGLAAHKVLVNSDLVCKISGF  151 (266)
T ss_pred             -CCCcEEEEEeCCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHH---CCEeeccccHhhEEEcCCCcEEECCC
Confidence             567999999999999999987643  358899999999999999999999   79999999999999999999999999


Q ss_pred             Ccccccccccc--ccccccCccccCCCCC
Q 028629          178 NLPLLAENAEK--VGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~--~~~~~~~~~y~aPE~~  204 (206)
                      |.+........  .....++..|+|||..
T Consensus       152 g~~~~~~~~~~~~~~~~~~~~~y~aPE~~  180 (266)
T cd05064         152 RRLQEDKSEAIYTTMSGKSPVLWAAPEAI  180 (266)
T ss_pred             cccccccccchhcccCCCCceeecCHHHH
Confidence            98765432211  1122345679999964

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.96  E-value=2.3e-28  Score=196.31  Aligned_cols=171  Identities=18%  Similarity=0.292  Sum_probs=139.0

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC--CCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK--KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +|+..+.||+|+||.||++... +++.||+|.+...  .....+.+.+|+++++.++|+||+++++++.....  .....
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~--~~~~~   78 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHI--DPFEE   78 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCc--cccce
Confidence            4788999999999999999965 7999999988643  22334678899999999999999999998764211  11236


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++||+. ++|.+.+...   ..+++..+..++.|++.||.|||+   .+++|+||||+||++++++.++|+|||++.
T Consensus        79 ~~lv~e~~~-~~l~~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~  151 (372)
T cd07853          79 IYVVTELMQ-SDLHKIIVSP---QPLSSDHVKVFLYQILRGLKYLHS---AGILHRDIKPGNLLVNSNCVLKICDFGLAR  151 (372)
T ss_pred             EEEEeeccc-cCHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChHHEEECCCCCEEecccccee
Confidence            899999996 4788877654   458999999999999999999999   799999999999999999999999999998


Q ss_pred             cccccc--cccccccCccccCCCCC
Q 028629          182 LAENAE--KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~--~~~~~~~~~~y~aPE~~  204 (206)
                      ......  ......++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~y~aPE~~  176 (372)
T cd07853         152 VEEPDESKHMTQEVVTQYYRAPEIL  176 (372)
T ss_pred             ecccCccccCCCCCcCCCcCCHHHH
Confidence            654332  22234567889999964

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.96  E-value=2.7e-28  Score=202.09  Aligned_cols=181  Identities=15%  Similarity=0.194  Sum_probs=145.7

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccC-
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD-   96 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~-   96 (206)
                      ...++|...+.||+|+||.||+|... +++.||+|.+....  ......+.+|+..+..++|+|+++++..+....... 
T Consensus        29 ~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~  108 (496)
T PTZ00283         29 EQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNP  108 (496)
T ss_pred             ccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCc
Confidence            44579999999999999999999965 79999999997543  233456788999999999999999887664322111 


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCC-CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGH-AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                      .....++++|||+++++|.+++.... ....+++..++.++.|++.||.|+|+   .+|+||||||+|||+++++.+||+
T Consensus       109 ~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~---~~IiHrDLKP~NILl~~~~~vkL~  185 (496)
T PTZ00283        109 ENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHS---KHMIHRDIKSANILLCSNGLVKLG  185 (496)
T ss_pred             ccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEeCCCCEEEE
Confidence            11224689999999999999886532 12468899999999999999999999   799999999999999999999999


Q ss_pred             cCCcccccccc---ccccccccCccccCCCCC
Q 028629          176 SYNLPLLAENA---EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       176 df~~a~~~~~~---~~~~~~~~~~~y~aPE~~  204 (206)
                      |||+++.....   .......|+..|+|||..
T Consensus       186 DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~  217 (496)
T PTZ00283        186 DFGFSKMYAATVSDDVGRTFCGTPYYVAPEIW  217 (496)
T ss_pred             ecccCeeccccccccccccccCCcceeCHHHh
Confidence            99999865432   223346789999999974

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.96  E-value=3e-28  Score=188.75  Aligned_cols=171  Identities=15%  Similarity=0.297  Sum_probs=143.6

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ++|+..+.||+|++|.||++... ++..+|+|.+.... ......+.+|+.++++++|+|++++++.+..       .+.
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-------~~~   73 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFI-------EGA   73 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheec-------CCe
Confidence            36888999999999999999976 78999999887542 2334678899999999999999999998765       568


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++||+++++|.+++........+++..+..++.|++.||.|||+.  .+++|+||+|+||++++++.++|+|||++.
T Consensus        74 ~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  151 (286)
T cd06622          74 VYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEE--HNIIHRDVKPTNVLVNGNGQVKLCDFGVSG  151 (286)
T ss_pred             EEEEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhc--CCEeeCCCCHHHEEECCCCCEEEeecCCcc
Confidence            999999999999998887642224689999999999999999999963  589999999999999999999999999997


Q ss_pred             cccccccccccccCccccCCCCC
Q 028629          182 LAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ...... .....++..|+|||..
T Consensus       152 ~~~~~~-~~~~~~~~~y~aPE~~  173 (286)
T cd06622         152 NLVASL-AKTNIGCQSYMAPERI  173 (286)
T ss_pred             cccCCc-cccCCCccCccCcchh
Confidence            664332 2234677889999975

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.7e-28  Score=189.60  Aligned_cols=171  Identities=20%  Similarity=0.371  Sum_probs=147.3

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      +.++|.+.+.||.|++|.||++... ++..+++|.+........+.+..|++++++++|+|++++++.+..       ..
T Consensus         3 ~~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~   75 (280)
T cd06611           3 PNDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFY-------EN   75 (280)
T ss_pred             chhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEec-------CC
Confidence            3567999999999999999999976 689999999976655556678899999999999999999998865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..+++|||+++++|.+++....  ..+++..+..++.|++.++.|||+   .+++|+||+|+||+++.++.++|+|||++
T Consensus        76 ~~~lv~e~~~~~~L~~~~~~~~--~~l~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p~nili~~~~~~~l~d~g~~  150 (280)
T cd06611          76 KLWILIEFCDGGALDSIMLELE--RGLTEPQIRYVCRQMLEALNFLHS---HKVIHRDLKAGNILLTLDGDVKLADFGVS  150 (280)
T ss_pred             eEEEEeeccCCCcHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEECCCCCEEEccCccc
Confidence            7999999999999999887643  358999999999999999999999   79999999999999999999999999998


Q ss_pred             cccccc-ccccccccCccccCCCCC
Q 028629          181 LLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      ...... .......++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~y~~PE~~  175 (280)
T cd06611         151 AKNKSTLQKRDTFIGTPYWMAPEVV  175 (280)
T ss_pred             hhhcccccccceeecchhhcCHHHH
Confidence            765432 233345678889999963

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.96  E-value=8.7e-29  Score=191.54  Aligned_cols=149  Identities=21%  Similarity=0.314  Sum_probs=133.8

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      -.++|+..+.||.|.-|.||++..+ ++..+|+|++++..   .....+...|-++|+.++||.++.++..+.+      
T Consensus        75 ~l~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet------  148 (459)
T KOG0610|consen   75 GLRHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFET------  148 (459)
T ss_pred             CHHHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeec------
Confidence            3467899999999999999999987 57899999998764   3334466779999999999999999999865      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       ....|++||||+||+|..+.+.++. ..+++..+..++.+++.||+|||-   +||+.|||||+||||-++|.++|+||
T Consensus       149 -~~~~cl~meyCpGGdL~~LrqkQp~-~~fse~~aRFYaAEvl~ALEYLHm---lGivYRDLKPENILvredGHIMLsDF  223 (459)
T KOG0610|consen  149 -DKYSCLVMEYCPGGDLHSLRQKQPG-KRFSESAARFYAAEVLLALEYLHM---LGIVYRDLKPENILVREDGHIMLSDF  223 (459)
T ss_pred             -cceeEEEEecCCCccHHHHHhhCCC-CccchhhHHHHHHHHHHHHHHHHh---hceeeccCCcceeEEecCCcEEeeec
Confidence             7889999999999999998887765 779999999999999999999999   89999999999999999999999999


Q ss_pred             Cccc
Q 028629          178 NLPL  181 (206)
Q Consensus       178 ~~a~  181 (206)
                      .++.
T Consensus       224 DLS~  227 (459)
T KOG0610|consen  224 DLSL  227 (459)
T ss_pred             cccc
Confidence            9984

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.96  E-value=4.5e-28  Score=184.63  Aligned_cols=169  Identities=16%  Similarity=0.290  Sum_probs=144.2

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC--CCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK--KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +|...+.||+|++|.||++... ++..|++|.+...  .......+.+|+++++.++|+|++++++.+..       .+.
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~   73 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLD-------KGK   73 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeecc-------CCE
Confidence            4778889999999999999976 7899999998743  23445678899999999999999999998865       568


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        74 ~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~i~~~l~~al~~lH~---~~i~h~dl~~~nili~~~~~~~l~df~~~~  149 (256)
T cd08529          74 LNIVMEYAENGDLHKLLKMQRG-RPLPEDQVWRFFIQILLGLAHLHS---KKILHRDIKSLNLFLDAYDNVKIGDLGVAK  149 (256)
T ss_pred             EEEEEEeCCCCcHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEEeCCCCEEEcccccce
Confidence            9999999999999999876432 468899999999999999999999   799999999999999999999999999998


Q ss_pred             cccccc-cccccccCccccCCCCC
Q 028629          182 LAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ...... ......++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~~y~aPE~~  173 (256)
T cd08529         150 LLSDNTNFANTIVGTPYYLSPELC  173 (256)
T ss_pred             eccCccchhhccccCccccCHHHh
Confidence            765432 22334677889999964

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.96  E-value=1.2e-28  Score=212.95  Aligned_cols=181  Identities=14%  Similarity=0.256  Sum_probs=147.0

Q ss_pred             HHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           19 LEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        19 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      .....++|.+.+.||.|+||.||+|... ++..+++|.+....  ......+..|+.++++++|+||+++++++..    
T Consensus         8 ge~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~d----   83 (1021)
T PTZ00266          8 GESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLN----   83 (1021)
T ss_pred             CccccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEe----
Confidence            3445688999999999999999999976 68889999987543  2334578889999999999999999998754    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCC-CCcccCHHHHHHHHHHHHHHHHHHhcCC----CCceeccCCccccEEecCC-
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGH-AWQSLTWTQRISAAIGVARGIQFLHTGI----VPGVFSNNLKITDILLDQN-  169 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~----~~~i~h~dl~p~nil~~~~-  169 (206)
                       .....++++|||+++++|.+++.... ....+++..++.|+.||+.||.|||+..    ..+|+|+||||+||||+.. 
T Consensus        84 -e~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~  162 (1021)
T PTZ00266         84 -KANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGI  162 (1021)
T ss_pred             -cCCCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCc
Confidence             23457899999999999999886521 1246899999999999999999999821    0259999999999999642 


Q ss_pred             ----------------CceeEccCCccccccccccccccccCccccCCCCC
Q 028629          170 ----------------LVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       170 ----------------~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                                      ..++|+|||++.............+++.|+|||..
T Consensus       163 ~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL  213 (1021)
T PTZ00266        163 RHIGKITAQANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELL  213 (1021)
T ss_pred             cccccccccccccCCCCceEEccCCccccccccccccccCCCccccCHHHH
Confidence                            34899999999877655445556889999999964

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.96  E-value=3.9e-28  Score=187.81  Aligned_cols=167  Identities=16%  Similarity=0.329  Sum_probs=142.4

Q ss_pred             CcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEE
Q 028629           26 FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      |+..+.||.|++|.||++... ++..+++|.+........+.+.+|+++++.++|+|++++++.+..       .+..++
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~-------~~~~~~   79 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYY-------ENNLWI   79 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEee-------CCEEEE
Confidence            678889999999999999976 688899999875554556678889999999999999999998865       567899


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      ++||+++++|..++....  .++++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++....
T Consensus        80 v~e~~~~~~l~~~~~~~~--~~l~~~~~~~~~~qi~~~L~~LH~---~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~  154 (282)
T cd06643          80 LIEFCAGGAVDAVMLELE--RPLTEPQIRVVCKQTLEALNYLHE---NKIIHRDLKAGNILFTLDGDIKLADFGVSAKNT  154 (282)
T ss_pred             EEEecCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCcccEEEccCCCEEEcccccccccc
Confidence            999999999988876532  458999999999999999999999   799999999999999999999999999987654


Q ss_pred             cc-ccccccccCccccCCCCC
Q 028629          185 NA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       185 ~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      .. .......++..|+|||..
T Consensus       155 ~~~~~~~~~~~~~~y~aPE~~  175 (282)
T cd06643         155 RTIQRRDSFIGTPYWMAPEVV  175 (282)
T ss_pred             ccccccccccccccccCHhhc
Confidence            32 223345678899999964

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.96  E-value=4.1e-28  Score=192.77  Aligned_cols=173  Identities=14%  Similarity=0.229  Sum_probs=141.5

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ...++|...+.||.|+||.||+|... ++..||+|.+....  ......+.+|+.++++++|+||+++++++...... .
T Consensus        12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~-~   90 (343)
T cd07878          12 EVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSI-E   90 (343)
T ss_pred             hhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccc-c
Confidence            34678999999999999999999965 78899999986432  22345677899999999999999999877532111 1


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      .....+++++++ +++|.+++..    ..+++..+..++.|++.||.|||+   .+|+|+||||+||++++++.+||+||
T Consensus        91 ~~~~~~~~~~~~-~~~l~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH~---~~ivHrdikp~Nil~~~~~~~kl~Df  162 (343)
T cd07878          91 NFNEVYLVTNLM-GADLNNIVKC----QKLSDEHVQFLIYQLLRGLKYIHS---AGIIHRDLKPSNVAVNEDCELRILDF  162 (343)
T ss_pred             ccCcEEEEeecC-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHH---CCeecccCChhhEEECCCCCEEEcCC
Confidence            124578999988 6699887764    348899999999999999999999   79999999999999999999999999


Q ss_pred             CccccccccccccccccCccccCCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |++.......  ....++..|+|||..
T Consensus       163 g~~~~~~~~~--~~~~~t~~y~aPE~~  187 (343)
T cd07878         163 GLARQADDEM--TGYVATRWYRAPEIM  187 (343)
T ss_pred             ccceecCCCc--CCccccccccCchHh
Confidence            9998765432  235688899999964

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.96  E-value=6.6e-28  Score=183.87  Aligned_cols=169  Identities=15%  Similarity=0.306  Sum_probs=145.1

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +|+..+.||.|++|.||.+... ++..+++|.+....  ....+.+.+|+.++++++|+|++++++++.+       .+.
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-------~~~   73 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMD-------DNT   73 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEec-------CCe
Confidence            5889999999999999999965 78899999987543  3445678899999999999999999999865       568


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      +++++||+++++|.+++..... ..+++..+..++.|++.++.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        74 ~~~~~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~  149 (256)
T cd08221          74 LLIEMEYANGGTLYDKIVRQKG-QLFEEEMVLWYLFQIVSAVSYIHK---AGILHRDIKTLNIFLTKAGLIKLGDFGISK  149 (256)
T ss_pred             EEEEEEecCCCcHHHHHHhccc-cCCCHHHHHHHHHHHHHHHHHHHh---CCccccCCChHhEEEeCCCCEEECcCcceE
Confidence            9999999999999999976532 458899999999999999999999   799999999999999999999999999998


Q ss_pred             cccccc-cccccccCccccCCCCC
Q 028629          182 LAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ...... ......++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~~y~ape~~  173 (256)
T cd08221         150 ILGSEYSMAETVVGTPYYMSPELC  173 (256)
T ss_pred             EcccccccccccCCCccccCHhhc
Confidence            764433 33445778899999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.96  E-value=4.8e-28  Score=188.79  Aligned_cols=169  Identities=17%  Similarity=0.325  Sum_probs=145.9

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ...+|+..+.||.|++|.||++... +++.|++|.+........+.+.+|+..++.++|+|++++++.+..       ..
T Consensus        17 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-------~~   89 (296)
T cd06655          17 PKKKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLV-------GD   89 (296)
T ss_pred             CcceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEec-------Cc
Confidence            3457999999999999999999965 789999999976655556778899999999999999999998865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..++++||+++++|.+++...    .+++..+..++.|++.|+.+||+   .+++|+||+|+||++++++.++|+|||++
T Consensus        90 ~~~lv~e~~~~~~L~~~~~~~----~l~~~~~~~i~~~l~~al~~LH~---~~i~H~dL~p~Nili~~~~~~kl~dfg~~  162 (296)
T cd06655          90 ELFVVMEYLAGGSLTDVVTET----CMDEAQIAAVCRECLQALEFLHA---NQVIHRDIKSDNVLLGMDGSVKLTDFGFC  162 (296)
T ss_pred             eEEEEEEecCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEccCccc
Confidence            799999999999999988653    47899999999999999999999   79999999999999999999999999998


Q ss_pred             ccccccc-cccccccCccccCCCCC
Q 028629          181 LLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ....... ......++..|+|||..
T Consensus       163 ~~~~~~~~~~~~~~~~~~y~aPE~~  187 (296)
T cd06655         163 AQITPEQSKRSTMVGTPYWMAPEVV  187 (296)
T ss_pred             hhcccccccCCCcCCCccccCcchh
Confidence            7654332 22335677889999974

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.96  E-value=3.8e-28  Score=185.40  Aligned_cols=168  Identities=20%  Similarity=0.336  Sum_probs=139.3

Q ss_pred             cCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEE
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~  103 (206)
                      .+|+..+.||+|++|.||++...++..+++|.+... ......+.+|+++++.++|+|++++++++..       .+..+
T Consensus         4 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~~~   75 (256)
T cd05059           4 SELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREG-AMSEDDFIEEAKVMMKLSHPNLVQLYGVCTK-------QRPIF   75 (256)
T ss_pred             HHcchhhhhccCCCceEEEeEecCCccEEEEEeccC-CCCHHHHHHHHHHHHhCCCCCEEEEEEEEcC-------CCceE
Confidence            458899999999999999999877778999988633 3344578889999999999999999988754       55789


Q ss_pred             EEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccc
Q 028629          104 LIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  183 (206)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~  183 (206)
                      +++||+++++|.+++....  ..+++..++.++.|++.|+.|||+   .+++|+||+|+||++++++.++|+|||+++..
T Consensus        76 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~  150 (256)
T cd05059          76 IVTEYMANGCLLNYLRERK--GKLGTEWLLDMCSDVCEAMEYLES---NGFIHRDLAARNCLVGEDNVVKVSDFGLARYV  150 (256)
T ss_pred             EEEecCCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHH---CCcccccccHhhEEECCCCcEEECCcccceec
Confidence            9999999999999987543  358899999999999999999999   79999999999999999999999999999865


Q ss_pred             ccccccc--ccccCccccCCCCC
Q 028629          184 ENAEKVG--HVTPYSGSINPTNS  204 (206)
Q Consensus       184 ~~~~~~~--~~~~~~~y~aPE~~  204 (206)
                      .+.....  ....+..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~y~~Pe~~  173 (256)
T cd05059         151 LDDQYTSSQGTKFPVKWAPPEVF  173 (256)
T ss_pred             ccccccccCCCCCCccccCHHHh
Confidence            4332111  11223469999964

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.96  E-value=1.2e-29  Score=203.46  Aligned_cols=166  Identities=20%  Similarity=0.357  Sum_probs=145.5

Q ss_pred             HHHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        18 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .|+.+......++-||+|+.|.||+|+.. ++.||||.+..-       -..+|+=|++|+|+||+.+.++|.+      
T Consensus       118 ~WeiPFe~IsELeWlGSGaQGAVF~Grl~-netVAVKKV~el-------kETdIKHLRkLkH~NII~FkGVCtq------  183 (904)
T KOG4721|consen  118 LWEIPFEEISELEWLGSGAQGAVFLGRLH-NETVAVKKVREL-------KETDIKHLRKLKHPNIITFKGVCTQ------  183 (904)
T ss_pred             hccCCHHHhhhhhhhccCcccceeeeecc-CceehhHHHhhh-------hhhhHHHHHhccCcceeeEeeeecC------
Confidence            34444445566777999999999999996 889999988622       2347888999999999999999976      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       ...+||+||||+.|.|.+.++..   ..+....+.+|..+|+.||.|||.   ..|||||||.-||||+.+..+||+||
T Consensus       184 -sPcyCIiMEfCa~GqL~~VLka~---~~itp~llv~Wsk~IA~GM~YLH~---hKIIHRDLKSPNiLIs~~d~VKIsDF  256 (904)
T KOG4721|consen  184 -SPCYCIIMEFCAQGQLYEVLKAG---RPITPSLLVDWSKGIAGGMNYLHL---HKIIHRDLKSPNILISYDDVVKISDF  256 (904)
T ss_pred             -CceeEEeeeccccccHHHHHhcc---CccCHHHHHHHHHHhhhhhHHHHH---hhHhhhccCCCceEeeccceEEeccc
Confidence             67899999999999999999887   568899999999999999999999   69999999999999999999999999


Q ss_pred             CccccccccccccccccCccccCCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |.++....-.+....+||..+||||.+
T Consensus       257 GTS~e~~~~STkMSFaGTVaWMAPEvI  283 (904)
T KOG4721|consen  257 GTSKELSDKSTKMSFAGTVAWMAPEVI  283 (904)
T ss_pred             cchHhhhhhhhhhhhhhhHhhhCHHHh
Confidence            999987776777778999999999964

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.96  E-value=3.6e-28  Score=185.66  Aligned_cols=168  Identities=21%  Similarity=0.323  Sum_probs=140.2

Q ss_pred             cCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEE
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~  103 (206)
                      .+|...+.||+|++|.||.+...++..+|+|.+... ......+.+|+.++++++||||+++++++..       ....+
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~~~   75 (256)
T cd05113           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMKLSHEKLVQLYGVCTK-------QRPIY   75 (256)
T ss_pred             HHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCC-cccHHHHHHHHHHHhcCCCCCeeeEEEEEcc-------CCCcE
Confidence            468889999999999999998876667999988743 3345678999999999999999999998854       45689


Q ss_pred             EEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccc
Q 028629          104 LIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  183 (206)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~  183 (206)
                      ++|||+.+++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||.++..
T Consensus        76 lv~e~~~~~~l~~~i~~~~--~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~  150 (256)
T cd05113          76 IVTEYMSNGCLLNYLREHG--KRFQPSQLLEMCKDVCEGMAYLES---KQFIHRDLAARNCLVDDQGCVKVSDFGLSRYV  150 (256)
T ss_pred             EEEEcCCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccCcceEEEcCCCCEEECCCccceec
Confidence            9999999999999987643  358999999999999999999999   79999999999999999999999999999865


Q ss_pred             cccccc--cccccCccccCCCCC
Q 028629          184 ENAEKV--GHVTPYSGSINPTNS  204 (206)
Q Consensus       184 ~~~~~~--~~~~~~~~y~aPE~~  204 (206)
                      ......  ....++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~y~~pe~~  173 (256)
T cd05113         151 LDDEYTSSVGSKFPVRWSPPEVL  173 (256)
T ss_pred             CCCceeecCCCccChhhCCHHHH
Confidence            433211  112344679999974

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.96  E-value=5e-28  Score=184.44  Aligned_cols=167  Identities=22%  Similarity=0.366  Sum_probs=143.9

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-----CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-----SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      +|+..+.||+|++|.||+|... ++..|++|.+....     ....+.+.+|+.+++.++|+|++++++++..       
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-------   73 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTERE-------   73 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEec-------
Confidence            4778899999999999999976 78999999986543     2245678899999999999999999998755       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ....++++||+++++|.+++...   ..+++..++.++.|++.|+.+||+   .+++|+||+|+||++++++.++|+|||
T Consensus        74 ~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~~~ni~~~~~~~~kl~d~~  147 (258)
T cd06632          74 EDNLYIFLELVPGGSLAKLLKKY---GSFPEPVIRLYTRQILLGLEYLHD---RNTVHRDIKGANILVDTNGVVKLADFG  147 (258)
T ss_pred             CCeEEEEEEecCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEccCc
Confidence            56799999999999999998765   357899999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccccccccccCccccCCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ++.............++..|++||..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~y~~pe~~  173 (258)
T cd06632         148 MAKQVVEFSFAKSFKGSPYWMAPEVI  173 (258)
T ss_pred             cceeccccccccccCCCcceeCHHHh
Confidence            99876554434446678889999964

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.96  E-value=7.5e-28  Score=184.75  Aligned_cols=170  Identities=18%  Similarity=0.295  Sum_probs=141.5

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-----CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-----SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .+|...+.||+|++|.||++... ++..|++|.+....     ......+.+|+.++++++|+||+++++.+..     .
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~   76 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRD-----R   76 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEc-----C
Confidence            57999999999999999999975 68999999886432     1233567889999999999999999987643     2


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      ....+++++||+++++|.+++...   ..+++...+.++.|++.||.|||+   .+++|+||+|+||++++++.++|+||
T Consensus        77 ~~~~~~l~~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~~l~~LH~---~~i~H~~l~p~nil~~~~~~~~l~df  150 (266)
T cd06651          77 AEKTLTIFMEYMPGGSVKDQLKAY---GALTESVTRKYTRQILEGMSYLHS---NMIVHRDIKGANILRDSAGNVKLGDF  150 (266)
T ss_pred             CCCEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCEEEccC
Confidence            245789999999999999998765   347889999999999999999999   79999999999999999999999999


Q ss_pred             Ccccccccc----ccccccccCccccCCCCC
Q 028629          178 NLPLLAENA----EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~----~~~~~~~~~~~y~aPE~~  204 (206)
                      |++......    .......++.+|+|||..
T Consensus       151 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  181 (266)
T cd06651         151 GASKRLQTICMSGTGIRSVTGTPYWMSPEVI  181 (266)
T ss_pred             CCccccccccccCCccccCCccccccCHHHh
Confidence            999765432    122234577889999975

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.96  E-value=7.2e-28  Score=186.38  Aligned_cols=169  Identities=22%  Similarity=0.354  Sum_probs=140.9

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +|+..+.||+|++|.||+|... ++..|++|.+....  ......+.+|+.+++.++|+|++++++++..       ++.
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~   73 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQ-------ESR   73 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEee-------CCe
Confidence            4788899999999999999976 78999999986543  2234567889999999999999999998865       568


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++||++ ++|.+++........+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        74 ~~~v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  149 (285)
T cd07861          74 LYLIFEFLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHS---RRVLHRDLKPQNLLIDNKGVIKLADFGLAR  149 (285)
T ss_pred             EEEEEecCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCCHHHEEEcCCCcEEECccccee
Confidence            999999997 5888888654433568999999999999999999999   799999999999999999999999999997


Q ss_pred             cccccc-cccccccCccccCCCCC
Q 028629          182 LAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ...... ......++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~~y~aPE~~  173 (285)
T cd07861         150 AFGIPVRVYTHEVVTLWYRAPEVL  173 (285)
T ss_pred             ecCCCcccccCCcccccccChHHh
Confidence            654332 12223567789999964

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.96  E-value=6.8e-28  Score=185.35  Aligned_cols=177  Identities=18%  Similarity=0.335  Sum_probs=145.9

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      +.+.|+..+.||+|+||.||+|... ++..+|+|.+.... .....+.+|+.++.++ +|+|++++.+.+...... ...
T Consensus         4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~-~~~   81 (272)
T cd06637           4 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPP-GMD   81 (272)
T ss_pred             hhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC-ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCC-CCC
Confidence            4567999999999999999999976 68899999987443 3446788899999998 699999999988652211 113


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...++++||+.+++|.+++..... ..+++..+..++.|++.|+.|||+   .+++|+||+|+||++++++.++|+|||+
T Consensus        82 ~~~~iv~e~~~~~~L~~~l~~~~~-~~l~~~~~~~~~~qi~~~l~~LH~---~~ivh~dl~~~nili~~~~~~~l~Dfg~  157 (272)
T cd06637          82 DQLWLVMEFCGAGSVTDLIKNTKG-NTLKEEWIAYICREILRGLSHLHQ---HKVIHRDIKGQNVLLTENAEVKLVDFGV  157 (272)
T ss_pred             cEEEEEEEcCCCCcHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHEEECCCCCEEEccCCC
Confidence            468999999999999999876432 458899999999999999999999   7999999999999999999999999999


Q ss_pred             ccccccc-ccccccccCccccCCCCC
Q 028629          180 PLLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      +...... .......++..|+|||..
T Consensus       158 ~~~~~~~~~~~~~~~g~~~y~aPE~~  183 (272)
T cd06637         158 SAQLDRTVGRRNTFIGTPYWMAPEVI  183 (272)
T ss_pred             ceecccccccCCcccccccccCHhHh
Confidence            9866432 233345788899999964

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.96  E-value=2.9e-28  Score=186.75  Aligned_cols=170  Identities=23%  Similarity=0.390  Sum_probs=140.3

Q ss_pred             HhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ..++|...+.||+|++|.||+|...+...|++|.+.... ...+.+.+|++++++++|+|++++++.+.        ...
T Consensus         4 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~~~~--------~~~   74 (262)
T cd05071           4 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS--------EEP   74 (262)
T ss_pred             ChHHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCc-cCHHHHHHHHHHHHhCCCCCcceEEEEEC--------CCC
Confidence            356799999999999999999987656679999987433 33467889999999999999999988653        245


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .+++|||+++++|.+++..... ..+++..++.++.|++.||.|+|+   .+++|+||+|+||++++++.++|+|||.+.
T Consensus        75 ~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl~p~Nill~~~~~~~L~dfg~~~  150 (262)
T cd05071          75 IYIVTEYMSKGSLLDFLKGEMG-KYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLAR  150 (262)
T ss_pred             cEEEEEcCCCCcHHHHHhhccc-cCCCHHHHHHHHHHHHHHHHHHHH---CCccccccCcccEEEcCCCcEEeccCCcee
Confidence            7899999999999999975422 357899999999999999999999   799999999999999999999999999998


Q ss_pred             cccccccc--cccccCccccCCCCC
Q 028629          182 LAENAEKV--GHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~~~--~~~~~~~~y~aPE~~  204 (206)
                      ........  ....++..|+|||+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~y~~PE~~  175 (262)
T cd05071         151 LIEDNEYTARQGAKFPIKWTAPEAA  175 (262)
T ss_pred             eccccccccccCCcccceecCHhHh
Confidence            66543211  123455679999975

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.7e-29  Score=214.91  Aligned_cols=173  Identities=18%  Similarity=0.244  Sum_probs=152.8

Q ss_pred             HHHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC---CCccHHHHHHHHHHHhccCCCceeeecccccccc
Q 028629           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECY   93 (206)
Q Consensus        18 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   93 (206)
                      +......+|.++++||+|+||.|..++++ +++.||+|.+++.   +......|..|-.+|..-+.+.|+.++-.|.+  
T Consensus        69 ~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD--  146 (1317)
T KOG0612|consen   69 ELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQD--  146 (1317)
T ss_pred             HHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcC--
Confidence            34444578999999999999999999987 7999999999863   45667788899999998899999999888866  


Q ss_pred             ccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCcee
Q 028629           94 FDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAK  173 (206)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~k  173 (206)
                           ..++|+||||++||+|-.++....   .+++.....|...|..||.-+|+   .|+|||||||.|||+|..|.+|
T Consensus       147 -----~~~LYlVMdY~pGGDlltLlSk~~---~~pE~~ArFY~aEiVlAldslH~---mgyVHRDiKPDNvLld~~GHik  215 (1317)
T KOG0612|consen  147 -----ERYLYLVMDYMPGGDLLTLLSKFD---RLPEDWARFYTAEIVLALDSLHS---MGYVHRDIKPDNVLLDKSGHIK  215 (1317)
T ss_pred             -----ccceEEEEecccCchHHHHHhhcC---CChHHHHHHHHHHHHHHHHHHHh---ccceeccCCcceeEecccCcEe
Confidence                 779999999999999999998873   58899999999999999999999   8999999999999999999999


Q ss_pred             EccCCccccccccc--cccccccCccccCCCC
Q 028629          174 ISSYNLPLLAENAE--KVGHVTPYSGSINPTN  203 (206)
Q Consensus       174 l~df~~a~~~~~~~--~~~~~~~~~~y~aPE~  203 (206)
                      ++|||.+-.++.+.  ......||+.|.+||-
T Consensus       216 LADFGsClkm~~dG~V~s~~aVGTPDYISPEv  247 (1317)
T KOG0612|consen  216 LADFGSCLKMDADGTVRSSVAVGTPDYISPEV  247 (1317)
T ss_pred             eccchhHHhcCCCCcEEeccccCCCCccCHHH
Confidence            99999998887554  4455699999999984

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=9e-29  Score=196.61  Aligned_cols=170  Identities=15%  Similarity=0.218  Sum_probs=152.9

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc--cHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH--STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      +..-|...+-||+|.|..|-++++. +|+.||+|++++-+..  ....+++|++.|+.++||||+++|++.-.       
T Consensus        16 IAGLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDT-------   88 (864)
T KOG4717|consen   16 IAGLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDT-------   88 (864)
T ss_pred             eeeeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcc-------
Confidence            3556899999999999999999977 8999999999865533  34578999999999999999999998854       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC-CCceeEccC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-NLVAKISSY  177 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~-~~~~kl~df  177 (206)
                      +..+||++|.-++|+|.+++-+..  ..++++....++.||+.|+.|+|+   ..++||||||+|+++.+ -|.+|+.||
T Consensus        89 QTKlyLiLELGD~GDl~DyImKHe--~Gl~E~La~kYF~QI~~AI~YCHq---LHVVHRDLKPENVVFFEKlGlVKLTDF  163 (864)
T KOG4717|consen   89 QTKLYLILELGDGGDLFDYIMKHE--EGLNEDLAKKYFAQIVHAISYCHQ---LHVVHRDLKPENVVFFEKLGLVKLTDF  163 (864)
T ss_pred             cceEEEEEEecCCchHHHHHHhhh--ccccHHHHHHHHHHHHHHHHHHhh---hhhhcccCCcceeEEeeecCceEeeec
Confidence            789999999999999999987654  469999999999999999999999   89999999999999885 489999999


Q ss_pred             CccccccccccccccccCccccCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      |++-.+.+..+....+|...|-|||-
T Consensus       164 GFSNkf~PG~kL~TsCGSLAYSAPEI  189 (864)
T KOG4717|consen  164 GFSNKFQPGKKLTTSCGSLAYSAPEI  189 (864)
T ss_pred             cccccCCCcchhhcccchhhccCchh
Confidence            99999999999999999999999994

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.96  E-value=3e-28  Score=196.97  Aligned_cols=176  Identities=22%  Similarity=0.361  Sum_probs=140.9

Q ss_pred             HHHHhcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCCC-ccHHHHHHHHHHHhccC-CCceeeeccccc
Q 028629           19 LEEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLR-HCHLVSALGHCF   90 (206)
Q Consensus        19 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~   90 (206)
                      +....++|.+++.||+|+||.||+|...      ++..||+|.+..... ...+.+.+|+.+++++. ||||+++++++.
T Consensus        32 ~~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~  111 (400)
T cd05105          32 WEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACT  111 (400)
T ss_pred             eeccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEc
Confidence            3344678899999999999999999853      234799999964432 33457889999999996 999999999986


Q ss_pred             cccccCCCCceEEEEEeecCCCCHHHHHhcCCC-----------------------------------------------
Q 028629           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA-----------------------------------------------  123 (206)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-----------------------------------------------  123 (206)
                      .       .+..+++|||+++|+|.+++.....                                               
T Consensus       112 ~-------~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (400)
T cd05105         112 K-------SGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQAD  184 (400)
T ss_pred             c-------CCceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhccccccccccccc
Confidence            5       5679999999999999988754210                                               


Q ss_pred             ----------------------------------------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceecc
Q 028629          124 ----------------------------------------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSN  157 (206)
Q Consensus       124 ----------------------------------------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~  157 (206)
                                                                    ...+++..+..++.|++.||.|||+   .+++|+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivH~  261 (400)
T cd05105         185 TTQYVPMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLAS---KNCVHR  261 (400)
T ss_pred             ccccchhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCC
Confidence                                                          1246788889999999999999999   799999


Q ss_pred             CCccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCCC
Q 028629          158 NLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       158 dl~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      ||+|+||++++++.++|+|||++.......   ......++..|+|||..
T Consensus       262 dikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~  311 (400)
T cd05105         262 DLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESI  311 (400)
T ss_pred             CCChHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhh
Confidence            999999999999999999999998654322   12223455679999964

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.96  E-value=7.5e-28  Score=184.69  Aligned_cols=171  Identities=24%  Similarity=0.392  Sum_probs=141.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-C---CcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-N---GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~---~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .++|+..+.||+|+||.||+|.+. +   ...|++|.++... ......+..|+.++++++|+||+++.+.+..      
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~------   76 (266)
T cd05033           3 PSYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTK------   76 (266)
T ss_pred             hHHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEec------
Confidence            467999999999999999999974 2   4578999886543 2334578889999999999999999998754      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       .+..++++||+++++|.+++....  ..+++..++.++.|++.|+.|||+   .+++|+||+|+||++++++.++|+||
T Consensus        77 -~~~~~iv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~Lh~---~~i~H~di~p~nili~~~~~~~l~df  150 (266)
T cd05033          77 -SRPVMIITEYMENGSLDKFLREND--GKFTVGQLVGMLRGIASGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDF  150 (266)
T ss_pred             -CCceEEEEEcCCCCCHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCCEEECcc
Confidence             567899999999999999987643  358899999999999999999999   79999999999999999999999999


Q ss_pred             Cccccccccc---cccccccCccccCCCCCC
Q 028629          178 NLPLLAENAE---KVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       178 ~~a~~~~~~~---~~~~~~~~~~y~aPE~~~  205 (206)
                      |++.......   ......++..|+|||...
T Consensus       151 g~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~  181 (266)
T cd05033         151 GLSRRLEDSEATYTTKGGKIPIRWTAPEAIA  181 (266)
T ss_pred             chhhcccccccceeccCCCCCccccChhhhc
Confidence            9998775211   111123346799999753

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.96  E-value=1.1e-27  Score=182.55  Aligned_cols=169  Identities=17%  Similarity=0.244  Sum_probs=143.0

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      +|+..+.||.|++|.||++... ++..+++|.+.... ....+.+.+|+.+++.++|+|++++.+.+..       .+..
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~~   73 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEA-------DGHL   73 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEE-------CCEE
Confidence            5788999999999999999976 78999999986433 3345678889999999999999999998765       6689


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      ++++||+++++|.+++..... ..+++...+.++.|++.||.+||+   .+++|+||+|+||++++++.++++|||.+..
T Consensus        74 ~lv~e~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~al~~lH~---~~i~H~dl~p~nili~~~~~~~l~dfg~~~~  149 (255)
T cd08219          74 YIVMEYCDGGDLMQKIKLQRG-KLFPEDTILQWFVQMCLGVQHIHE---KRVLHRDIKSKNIFLTQNGKVKLGDFGSARL  149 (255)
T ss_pred             EEEEeeCCCCcHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCcceEEECCCCcEEEcccCccee
Confidence            999999999999998865332 457899999999999999999999   7999999999999999999999999999986


Q ss_pred             ccccc-cccccccCccccCCCCC
Q 028629          183 AENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       183 ~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ..... ......++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~~~aPE~~  172 (255)
T cd08219         150 LTSPGAYACTYVGTPYYVPPEIW  172 (255)
T ss_pred             ecccccccccccCCccccCHHHH
Confidence            64432 22335677889999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.96  E-value=9.4e-28  Score=184.10  Aligned_cols=171  Identities=14%  Similarity=0.260  Sum_probs=142.6

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ++|+..+.||+|+||.||+|... ++..||+|.+....   ......+.+|+++++.++|+|++++++.+..       .
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~   74 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIE-------D   74 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEE-------C
Confidence            57899999999999999999976 78999999886432   2334567889999999999999999998765       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCC-CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGH-AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      +..++++||+++++|.+++.... ....+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||
T Consensus        75 ~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~~~nil~~~~~~~~l~d~g  151 (267)
T cd08228          75 NELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHS---RRVMHRDIKPANVFITATGVVKLGDLG  151 (267)
T ss_pred             CeEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCCHHHEEEcCCCCEEECccc
Confidence            67899999999999998885421 11457889999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccc-cccccccCccccCCCCC
Q 028629          179 LPLLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ++....... ......++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~aPE~~  178 (267)
T cd08228         152 LGRFFSSKTTAAHSLVGTPYYMSPERI  178 (267)
T ss_pred             cceeccchhHHHhcCCCCccccChhhh
Confidence            998765432 22234677889999974

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.96  E-value=9.3e-28  Score=187.46  Aligned_cols=169  Identities=17%  Similarity=0.324  Sum_probs=141.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|...+.||.|++|.||+|... ++..||+|.+.... ......+.+|+.+++.++|+||+++++++..       .+
T Consensus         5 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~-------~~   77 (301)
T cd07873           5 LETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHT-------EK   77 (301)
T ss_pred             ccceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEec-------CC
Confidence            467999999999999999999976 78899999987543 3334567789999999999999999998865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..++++||+++ +|.+++....  ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++
T Consensus        78 ~~~lv~e~~~~-~l~~~l~~~~--~~~~~~~~~~~~~qi~~aL~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~dfg~~  151 (301)
T cd07873          78 SLTLVFEYLDK-DLKQYLDDCG--NSINMHNVKLFLFQLLRGLNYCHR---RKVLHRDLKPQNLLINERGELKLADFGLA  151 (301)
T ss_pred             eEEEEEecccc-CHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHHHEEECCCCcEEECcCcch
Confidence            79999999974 8988886543  357899999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccc-cccccccCccccCCCCC
Q 028629          181 LLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ....... ......++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~y~~PE~~  176 (301)
T cd07873         152 RAKSIPTKTYSNEVVTLWYRPPDIL  176 (301)
T ss_pred             hccCCCCCcccccceeecccCcHHH
Confidence            7654322 22234567889999963

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.96  E-value=8.4e-28  Score=186.00  Aligned_cols=168  Identities=15%  Similarity=0.266  Sum_probs=142.1

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ++|+..+.||+|++|.||++... +++.|++|.+....  ....+.+.+|+.++++++|+|++++.+.+..       ..
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-------~~   73 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRR-------KR   73 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEee-------CC
Confidence            46889999999999999999976 68999999886443  2234567889999999999999999998865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..++++||++++++..+....   ..+++..++.++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||++
T Consensus        74 ~~~~v~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~ql~~~l~~LH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~  147 (286)
T cd07847          74 KLHLVFEYCDHTVLNELEKNP---RGVPEHLIKKIIWQTLQAVNFCHK---HNCIHRDVKPENILITKQGQIKLCDFGFA  147 (286)
T ss_pred             EEEEEEeccCccHHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCChhhEEEcCCCcEEECccccc
Confidence            789999999998888776554   348999999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccc-cccccccCccccCCCCC
Q 028629          181 LLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ....... ......++..|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~aPE~~  172 (286)
T cd07847         148 RILTGPGDDYTDYVATRWYRAPELL  172 (286)
T ss_pred             eecCCCcccccCcccccccCCHHHH
Confidence            8775543 22334567789999963

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.96  E-value=7.7e-29  Score=186.78  Aligned_cols=163  Identities=20%  Similarity=0.314  Sum_probs=140.6

Q ss_pred             cceeccCcceeEEEEE-EeCCcEEEEEEeecCCCccHHHHHHHHHHHhccC-CCceeeeccccccccccCCCCceEEEEE
Q 028629           29 SAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVSRIFLIF  106 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~~~~lv~  106 (206)
                      .+.||+|+++.|..|+ ..+|..||+|++++.......++.+|++.+..++ |+||++++++|.+       ++++||||
T Consensus        83 ~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEd-------d~~FYLVf  155 (463)
T KOG0607|consen   83 SELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFED-------DTRFYLVF  155 (463)
T ss_pred             HHHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcc-------cceEEEEE
Confidence            4679999999999999 4589999999999888888889999999999995 9999999999966       78899999


Q ss_pred             eecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC---CceeEccCCccccc
Q 028629          107 EYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN---LVAKISSYNLPLLA  183 (206)
Q Consensus       107 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~---~~~kl~df~~a~~~  183 (206)
                      |-+.||+|.+.+..+   ..+++.....+..+|+.||.+||.   .||.|||+||+|||..+.   .-+|||||.+..-+
T Consensus       156 EKm~GGplLshI~~~---~~F~E~EAs~vvkdia~aLdFlH~---kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~  229 (463)
T KOG0607|consen  156 EKMRGGPLLSHIQKR---KHFNEREASRVVKDIASALDFLHT---KGIAHRDLKPENILCESPNKVSPVKICDFDLGSGI  229 (463)
T ss_pred             ecccCchHHHHHHHh---hhccHHHHHHHHHHHHHHHHHHhh---cCcccccCCccceeecCCCCcCceeeecccccccc
Confidence            999999999998877   569999999999999999999999   899999999999999854   35799999988543


Q ss_pred             ccc------c--cccccccCccccCCCCC
Q 028629          184 ENA------E--KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       184 ~~~------~--~~~~~~~~~~y~aPE~~  204 (206)
                      ...      .  ....-+|+..|||||..
T Consensus       230 k~~~~~spastP~L~tPvGSAEfMAPEVV  258 (463)
T KOG0607|consen  230 KLNNDCSPASTPELLTPVGSAEFMAPEVV  258 (463)
T ss_pred             ccCCCCCCCCCccccCcccchhhcchhHH
Confidence            211      1  22234677789999964

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.96  E-value=8e-28  Score=183.50  Aligned_cols=167  Identities=23%  Similarity=0.464  Sum_probs=143.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      .++|...+.||.|++|.||+|... ++.|++|.+..... ..+.+.+|+.++++++|+|++++++++..       ....
T Consensus         5 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~~   75 (256)
T cd05039           5 SKELKLGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVLQ-------GNPL   75 (256)
T ss_pred             hhhccceeeeecCCCceEEEEEec-CcEEEEEEeccchh-HHHHHHHHHHHHHhcCCcceeeeEEEEcC-------CCCe
Confidence            567899999999999999999875 88899999975543 56788999999999999999999998764       5678


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      ++++|++++++|.+++..... ..+++..++.++.|++.|+.|||+   .+++|+||+|+||++++++.++|+|||.+..
T Consensus        76 ~~v~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lh~---~~i~H~di~p~Nili~~~~~~~l~d~g~~~~  151 (256)
T cd05039          76 YIVTEYMAKGSLVDYLRSRGR-AVITLAQQLGFALDVCEGMEYLEE---KNFVHRDLAARNVLVSEDLVAKVSDFGLAKE  151 (256)
T ss_pred             EEEEEecCCCcHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCccchhcccceEEEeCCCCEEEcccccccc
Confidence            999999999999999976532 368999999999999999999999   7999999999999999999999999999987


Q ss_pred             ccccccccccccCccccCCCCC
Q 028629          183 AENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       183 ~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ......  ....+..|+|||+.
T Consensus       152 ~~~~~~--~~~~~~~~~ape~~  171 (256)
T cd05039         152 ASQGQD--SGKLPVKWTAPEAL  171 (256)
T ss_pred             cccccc--cCCCcccccCchhh
Confidence            643322  23455679999974

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.96  E-value=6.1e-28  Score=184.80  Aligned_cols=166  Identities=30%  Similarity=0.512  Sum_probs=134.3

Q ss_pred             ccceeccCcceeEEEEEEe-----CCcEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           28 TSAFMGEGSKGQMYRGRLK-----NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        28 ~~~~lg~g~~g~v~~~~~~-----~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ..+.||.|.||.||+|.+.     .+..|++|.++.... ...+.+.+|++.+++++|+||+++++++..       .+.
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~-------~~~   75 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIE-------NEP   75 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEES-------SSS
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccc-------ccc
Confidence            4578999999999999976     256799999965433 336789999999999999999999999975       456


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+++|++|+++||++++++.+||+|||++.
T Consensus        76 ~~lv~e~~~~g~L~~~L~~~~~-~~~~~~~~~~i~~~i~~~l~~Lh~---~~iiH~~l~~~nill~~~~~~Kl~~f~~~~  151 (259)
T PF07714_consen   76 LFLVMEYCPGGSLDDYLKSKNK-EPLSEQQRLSIAIQIAEALSYLHS---NNIIHGNLSPSNILLDSNGQVKLSDFGLSR  151 (259)
T ss_dssp             EEEEEE--TTEBHHHHHHHTCT-TTSBHHHHHHHHHHHHHHHHHHHH---TTEEEST-SGGGEEEETTTEEEEESTTTGE
T ss_pred             cccccccccccccccccccccc-cccccccccccccccccccccccc---cccccccccccccccccccccccccccccc
Confidence            9999999999999999987622 568999999999999999999999   799999999999999999999999999998


Q ss_pred             cccccc---cccccccCccccCCCCC
Q 028629          182 LAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      ......   ..........|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~aPE~~  177 (259)
T PF07714_consen  152 PISEKSKYKNDSSQQLPLRYLAPEVL  177 (259)
T ss_dssp             ETTTSSSEEESTTSESGGGGS-HHHH
T ss_pred             cccccccccccccccccccccccccc
Confidence            773222   22223455679999863

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.96  E-value=1.3e-27  Score=184.67  Aligned_cols=163  Identities=15%  Similarity=0.306  Sum_probs=138.1

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ++|+..+.||+|++|.||+|... ++..||+|.+.... ....+.+.+|++++++++|+|++++++.+..       .+.
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~~   73 (279)
T cd06619           1 QDIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFV-------ENR   73 (279)
T ss_pred             CcchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEE-------CCE
Confidence            35788899999999999999965 78899999987543 3334578899999999999999999998865       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++||+++++|....       .+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++.
T Consensus        74 ~~lv~e~~~~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nill~~~~~~~l~dfg~~~  143 (279)
T cd06619          74 ISICTEFMDGGSLDVYR-------KIPEHVLGRIAVAVVKGLTYLWS---LKILHRDVKPSNMLVNTRGQVKLCDFGVST  143 (279)
T ss_pred             EEEEEecCCCCChHHhh-------cCCHHHHHHHHHHHHHHHHHHHH---CCEeeCCCCHHHEEECCCCCEEEeeCCcce
Confidence            89999999999886432       36788888999999999999999   799999999999999999999999999998


Q ss_pred             cccccccccccccCccccCCCCC
Q 028629          182 LAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ....... ....++..|+|||..
T Consensus       144 ~~~~~~~-~~~~~~~~y~aPE~~  165 (279)
T cd06619         144 QLVNSIA-KTYVGTNAYMAPERI  165 (279)
T ss_pred             ecccccc-cCCCCChhhcCceee
Confidence            6654332 235788899999974

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.96  E-value=5.5e-28  Score=184.59  Aligned_cols=167  Identities=19%  Similarity=0.330  Sum_probs=145.4

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      +|+..+.||.|++|.||+|... ++..|++|.+....   ....+.+.+|++++++++|+|++++++.+..       ..
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~   73 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQD-------EE   73 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcC-------CC
Confidence            5888999999999999999976 68999999997543   2345678999999999999999999988754       66


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..++++||+.+++|.+++...   ..+++..+..++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||.+
T Consensus        74 ~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~~i~~~l~~lh~---~~i~h~dl~~~nil~~~~~~~~l~d~~~~  147 (258)
T cd05578          74 NMYLVVDLLLGGDLRYHLSQK---VKFSEEQVKFWICEIVLALEYLHS---KGIIHRDIKPDNILLDEQGHVHITDFNIA  147 (258)
T ss_pred             eEEEEEeCCCCCCHHHHHHhc---CCcCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeEEcCCCCEEEeecccc
Confidence            899999999999999998765   468899999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccccccccccCccccCCCCC
Q 028629          181 LLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      .............++..|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~~~y~~PE~~  171 (258)
T cd05578         148 TKVTPDTLTTSTSGTPGYMAPEVL  171 (258)
T ss_pred             cccCCCccccccCCChhhcCHHHH
Confidence            877655444456778889999964

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=9.8e-28  Score=184.79  Aligned_cols=167  Identities=20%  Similarity=0.332  Sum_probs=144.8

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ++|+..+.||.|++|.||+|... ++..+++|.+.... ......+.+|+.+++.++|+|++++.+.+..       ...
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~   73 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLK-------GSK   73 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEE-------CCe
Confidence            46888999999999999999976 78999999987553 3344578889999999999999999998765       568


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++|++++++|.+++...    .+++..++.++.|++.|+.+||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        74 ~~~v~e~~~~~~L~~~~~~~----~~~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~  146 (274)
T cd06609          74 LWIIMEYCGGGSCLDLLKPG----KLDETYIAFILREVLLGLEYLHE---EGKIHRDIKAANILLSEEGDVKLADFGVSG  146 (274)
T ss_pred             EEEEEEeeCCCcHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEEcccccce
Confidence            99999999999999998763    58899999999999999999999   799999999999999999999999999998


Q ss_pred             ccccc-ccccccccCccccCCCCC
Q 028629          182 LAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      ..... .......++..|+|||..
T Consensus       147 ~~~~~~~~~~~~~~~~~y~~PE~~  170 (274)
T cd06609         147 QLTSTMSKRNTFVGTPFWMAPEVI  170 (274)
T ss_pred             eecccccccccccCCccccChhhh
Confidence            77654 233445677889999974

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.96  E-value=1.1e-27  Score=182.31  Aligned_cols=163  Identities=19%  Similarity=0.373  Sum_probs=134.4

Q ss_pred             ceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEEEe
Q 028629           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE  107 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e  107 (206)
                      +.||+|+||.||+|... ++..+++|.+.... ......+.+|++++++++|+||+++++++..       ....++++|
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~~~lv~e   73 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQ-------KQPIYIVME   73 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcC-------CCCeEEEEe
Confidence            46899999999999976 78999999876443 2334678899999999999999999998865       567899999


Q ss_pred             ecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccccc
Q 028629          108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE  187 (206)
Q Consensus       108 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~  187 (206)
                      |+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++.......
T Consensus        74 ~~~~~~L~~~~~~~~--~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~  148 (252)
T cd05084          74 LVQGGDFLTFLRTEG--PRLKVKELIQMVENAAAGMEYLES---KHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGV  148 (252)
T ss_pred             eccCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHh---CCccccccchheEEEcCCCcEEECccccCccccccc
Confidence            999999999986542  357899999999999999999999   799999999999999999999999999997654321


Q ss_pred             cc---cccccCccccCCCCC
Q 028629          188 KV---GHVTPYSGSINPTNS  204 (206)
Q Consensus       188 ~~---~~~~~~~~y~aPE~~  204 (206)
                      ..   .....+..|+|||..
T Consensus       149 ~~~~~~~~~~~~~y~aPE~~  168 (252)
T cd05084         149 YASTGGMKQIPVKWTAPEAL  168 (252)
T ss_pred             ccccCCCCCCceeecCchhh
Confidence            11   111223569999974

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=1.1e-28  Score=211.35  Aligned_cols=181  Identities=20%  Similarity=0.314  Sum_probs=144.3

Q ss_pred             HHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeecccccccc----
Q 028629           20 EEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECY----   93 (206)
Q Consensus        20 ~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----   93 (206)
                      ....++|...+.||+|+||.||+++.+ +|..||||++.... ......+.+|+.++++++||||++++..|....    
T Consensus       475 SRY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~  554 (1351)
T KOG1035|consen  475 SRYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELT  554 (1351)
T ss_pred             hhHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCccc
Confidence            456788999999999999999999988 99999999997542 444567889999999999999999998765400    


Q ss_pred             --------------------------------------------------------ccCC--------------------
Q 028629           94 --------------------------------------------------------FDDS--------------------   97 (206)
Q Consensus        94 --------------------------------------------------------~~~~--------------------   97 (206)
                                                                              .+++                    
T Consensus       555 ~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS  634 (1351)
T KOG1035|consen  555 VLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTS  634 (1351)
T ss_pred             cccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCccccccccccccccccc
Confidence                                                                    0000                    


Q ss_pred             ------------------------CC--------ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHH
Q 028629           98 ------------------------SV--------SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQF  145 (206)
Q Consensus        98 ------------------------~~--------~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  145 (206)
                                              ..        ..+||.||||+..++.+++..+...  -.....|.++++|+.||.|
T Consensus       635 ~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~--~~~d~~wrLFreIlEGLaY  712 (1351)
T KOG1035|consen  635 DSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFN--SQRDEAWRLFREILEGLAY  712 (1351)
T ss_pred             ccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccc--hhhHHHHHHHHHHHHHHHH
Confidence                                    00        3479999999997777777765321  1477889999999999999


Q ss_pred             HhcCCCCceeccCCccccEEecCCCceeEccCCcccccc-------------------ccccccccccCccccCCCCCC
Q 028629          146 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE-------------------NAEKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       146 lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~-------------------~~~~~~~~~~~~~y~aPE~~~  205 (206)
                      +|+   +|++||||||.||++++++.|||+|||+|....                   +........||.-|+|||..+
T Consensus       713 IH~---~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~  788 (1351)
T KOG1035|consen  713 IHD---QGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLS  788 (1351)
T ss_pred             HHh---CceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhc
Confidence            999   899999999999999999999999999997511                   111334468888899999754

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.96  E-value=3.2e-30  Score=187.88  Aligned_cols=169  Identities=20%  Similarity=0.305  Sum_probs=146.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ..+|++.+.||+|.|+.|+++.+. +|+.+++|.++..+  ....+.+.+|+++-+.++||||+++.....+       .
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~-------~   82 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQE-------E   82 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcc-------c
Confidence            567899999999999999999976 89999999886553  4467789999999999999999999987754       6


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC---CCceeEcc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---NLVAKISS  176 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~---~~~~kl~d  176 (206)
                      ...++|+|++.|++|..-+-.+   .-.++...-.+.+||+.+|.|+|.   .+|+|||+||+|+++.+   ..-+|++|
T Consensus        83 ~~~ylvFe~m~G~dl~~eIV~R---~~ySEa~aSH~~rQiLeal~yCH~---n~IvHRDvkP~nllLASK~~~A~vKL~~  156 (355)
T KOG0033|consen   83 SFHYLVFDLVTGGELFEDIVAR---EFYSEADASHCIQQILEALAYCHS---NGIVHRDLKPENLLLASKAKGAAVKLAD  156 (355)
T ss_pred             ceeEEEEecccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh---cCceeccCChhheeeeeccCCCceeecc
Confidence            7899999999999988766544   457888889999999999999999   69999999999999973   35789999


Q ss_pred             CCccccccccccccccccCccccCCCCC
Q 028629          177 YNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ||+|.......-..-..||++|||||-.
T Consensus       157 FGvAi~l~~g~~~~G~~GtP~fmaPEvv  184 (355)
T KOG0033|consen  157 FGLAIEVNDGEAWHGFAGTPGYLSPEVL  184 (355)
T ss_pred             cceEEEeCCccccccccCCCcccCHHHh
Confidence            9999988866666668999999999954

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.96  E-value=3.1e-28  Score=193.14  Aligned_cols=174  Identities=22%  Similarity=0.371  Sum_probs=140.3

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCC-CccHHHHHHHHHHHhcc-CCCceeeecccccccc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFECY   93 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~   93 (206)
                      +..+|++.+.||.|+||.||+|...      +++.||+|++.... ....+.+.+|+.++.++ +|+||+++++++..  
T Consensus         5 ~~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~--   82 (337)
T cd05054           5 PRDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTK--   82 (337)
T ss_pred             CHHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEec--
Confidence            4567999999999999999999742      35789999987443 22345678899999999 79999999998754  


Q ss_pred             ccCCCCceEEEEEeecCCCCHHHHHhcCCC--------------------------------------------------
Q 028629           94 FDDSSVSRIFLIFEYVPNGTLRSWISEGHA--------------------------------------------------  123 (206)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~--------------------------------------------------  123 (206)
                          .+..+++++||+++++|.+++.....                                                  
T Consensus        83 ----~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (337)
T cd05054          83 ----PGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEE  158 (337)
T ss_pred             ----CCCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhccc
Confidence                24568899999999999998854211                                                  


Q ss_pred             --------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccccc---ccccc
Q 028629          124 --------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHV  192 (206)
Q Consensus       124 --------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~  192 (206)
                              ...+++..+..++.|++.||.|||+   .+|+||||||+||++++++.++|+|||++.......   .....
T Consensus       159 ~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~---~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~  235 (337)
T cd05054         159 DEEGDELYKEPLTLEDLISYSFQVARGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDA  235 (337)
T ss_pred             chhhhHHhhcCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCC
Confidence                    1257899999999999999999999   799999999999999999999999999998764322   12223


Q ss_pred             ccCccccCCCCC
Q 028629          193 TPYSGSINPTNS  204 (206)
Q Consensus       193 ~~~~~y~aPE~~  204 (206)
                      .++..|+|||+.
T Consensus       236 ~~~~~y~aPE~~  247 (337)
T cd05054         236 RLPLKWMAPESI  247 (337)
T ss_pred             CCCccccCcHHh
Confidence            456679999964

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.96  E-value=7.9e-28  Score=183.99  Aligned_cols=170  Identities=25%  Similarity=0.382  Sum_probs=142.1

Q ss_pred             HhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ..++|+..+.||+|+||.||+|...++..+|+|.+... ......+.+|+.++++++|+|++++++++.        ...
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~--------~~~   74 (260)
T cd05067           4 PRETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQG-SMSPEAFLAEANLMKQLQHPRLVRLYAVVT--------QEP   74 (260)
T ss_pred             chHHceeeeeeccCccceEEeeecCCCceEEEEEecCC-CCcHHHHHHHHHHHHhcCCcCeeeEEEEEc--------cCC
Confidence            45679999999999999999999878889999998743 334567889999999999999999988653        345


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++|++.+++|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        75 ~~~v~e~~~~~~L~~~~~~~~~-~~~~~~~~~~i~~~i~~al~~LH~---~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~  150 (260)
T cd05067          75 IYIITEYMENGSLVDFLKTPEG-IKLTINKLIDMAAQIAEGMAFIER---KNYIHRDLRAANILVSETLCCKIADFGLAR  150 (260)
T ss_pred             cEEEEEcCCCCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHhc---CCeecccccHHhEEEcCCCCEEEccCccee
Confidence            8999999999999998865433 458899999999999999999999   799999999999999999999999999998


Q ss_pred             ccccccc--ccccccCccccCCCCC
Q 028629          182 LAENAEK--VGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~~--~~~~~~~~~y~aPE~~  204 (206)
                      .......  .....++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~y~~pe~~  175 (260)
T cd05067         151 LIEDNEYTAREGAKFPIKWTAPEAI  175 (260)
T ss_pred             ecCCCCcccccCCcccccccCHHHh
Confidence            7653221  1123345679999964

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=4.9e-28  Score=198.31  Aligned_cols=163  Identities=13%  Similarity=0.177  Sum_probs=136.8

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ...|.+.+.||+|+||.||++... ++..||+|....      ..+.+|++++++++|+||+++++++..       .+.
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~------~~~~~E~~iL~~L~HpnIv~l~~~~~~-------~~~  234 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWY------ASSVHEARLLRRLSHPAVLALLDVRVV-------GGL  234 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccc------cCHHHHHHHHHHCCCCCCCcEEEEEEE-------CCE
Confidence            347999999999999999999976 688899996431      235679999999999999999998765       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++|++. ++|.+++....  ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.++|+|||+++
T Consensus       235 ~~lv~e~~~-~~L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~yLH~---~gIvHrDLKP~NILl~~~~~vkL~DFGla~  308 (461)
T PHA03211        235 TCLVLPKYR-SDLYTYLGARL--RPLGLAQVTAVARQLLSAIDYIHG---EGIIHRDIKTENVLVNGPEDICLGDFGAAC  308 (461)
T ss_pred             EEEEEEccC-CCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHH---CCEEECcCCHHHEEECCCCCEEEcccCCce
Confidence            899999995 58888776543  358999999999999999999999   799999999999999999999999999998


Q ss_pred             cccccc---cccccccCccccCCCCC
Q 028629          182 LAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      ......   ......||..|+|||+.
T Consensus       309 ~~~~~~~~~~~~~~~GT~~Y~APE~~  334 (461)
T PHA03211        309 FARGSWSTPFHYGIAGTVDTNAPEVL  334 (461)
T ss_pred             ecccccccccccccCCCcCCcCHHHH
Confidence            654322   12235689999999975

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.96  E-value=1.6e-27  Score=184.28  Aligned_cols=185  Identities=17%  Similarity=0.338  Sum_probs=150.8

Q ss_pred             eCHHHHHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhcc-CCCceeeecccccc
Q 028629           14 FSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFE   91 (206)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~   91 (206)
                      .++.+...+.+.|+..+.||.|+||.||+|... ++..+++|.+.... .....+..|+.++.++ +|+|++++++.+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   84 (282)
T cd06636           6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-DEEEEIKLEINMLKKYSHHRNIATYYGAFIK   84 (282)
T ss_pred             hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-HHHHHHHHHHHHHHHhcCCCcEEEEeeehhc
Confidence            456666677889999999999999999999975 68899999886443 3345678899999998 69999999998864


Q ss_pred             ccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc
Q 028629           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV  171 (206)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~  171 (206)
                      ... .......+++|||+.+++|.+++..... ..+++..++.++.|++.|+.|||+   .+++|+||+|+||++++++.
T Consensus        85 ~~~-~~~~~~~~iv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~qi~~al~~LH~---~~ivH~dl~~~nili~~~~~  159 (282)
T cd06636          85 KSP-PGHDDQLWLVMEFCGAGSVTDLVKNTKG-NALKEDWIAYICREILRGLAHLHA---HKVIHRDIKGQNVLLTENAE  159 (282)
T ss_pred             ccc-cCCCCEEEEEEEeCCCCcHHHHHHHccC-CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCC
Confidence            211 1124578999999999999998876432 457888899999999999999999   79999999999999999999


Q ss_pred             eeEccCCcccccccc-ccccccccCccccCCCCC
Q 028629          172 AKISSYNLPLLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       172 ~kl~df~~a~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      ++|+|||++...... .......++..|+|||..
T Consensus       160 ~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l  193 (282)
T cd06636         160 VKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVI  193 (282)
T ss_pred             EEEeeCcchhhhhccccCCCcccccccccCHhhc
Confidence            999999998765432 233345678899999964

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.95  E-value=1e-27  Score=186.75  Aligned_cols=167  Identities=23%  Similarity=0.356  Sum_probs=141.2

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc-----cHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH-----STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      +|...+.||.|++|.||+|... +++.|++|.+......     ....+.+|++++++++|+|++++++++..       
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-------   73 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGH-------   73 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeec-------
Confidence            4788899999999999999976 7899999999754322     23456789999999999999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+..++++||+ +++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||
T Consensus        74 ~~~~~lv~e~~-~~~L~~~i~~~~--~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~dl~p~nill~~~~~~~l~dfg  147 (298)
T cd07841          74 KSNINLVFEFM-ETDLEKVIKDKS--IVLTPADIKSYMLMTLRGLEYLHS---NWILHRDLKPNNLLIASDGVLKLADFG  147 (298)
T ss_pred             CCEEEEEEccc-CCCHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCChhhEEEcCCCCEEEccce
Confidence            56899999999 889999987653  258999999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccc-cccccccCccccCCCCC
Q 028629          179 LPLLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ++....... ......++..|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~y~aPE~~  174 (298)
T cd07841         148 LARSFGSPNRKMTHQVVTRWYRAPELL  174 (298)
T ss_pred             eeeeccCCCccccccccceeeeCHHHH
Confidence            998765542 22223556789999963

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.95  E-value=6.8e-28  Score=184.71  Aligned_cols=170  Identities=18%  Similarity=0.355  Sum_probs=142.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ...|...+.||.|++|.||+|... ++..+++|.+... ......+.+|+++++.++|+|++++++++..       .+.
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~   76 (263)
T cd05052           5 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR-------EPP   76 (263)
T ss_pred             hHHeEEeeecCCcccceEEEEEEecCCceEEEEEecCC-chHHHHHHHHHHHHHhCCCCChhheEEEEcC-------CCC
Confidence            455888899999999999999976 6889999988743 3345678899999999999999999998754       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++||+++++|.+++..... ..+++..++.++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        77 ~~lv~e~~~~~~L~~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp~nil~~~~~~~kl~df~~~~  152 (263)
T cd05052          77 FYIITEFMTYGNLLDYLRECNR-QEVNAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSR  152 (263)
T ss_pred             cEEEEEeCCCCcHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCEeecccCcceEEEcCCCcEEeCCCcccc
Confidence            8999999999999999876432 458899999999999999999999   799999999999999999999999999998


Q ss_pred             ccccccccc--ccccCccccCCCCC
Q 028629          182 LAENAEKVG--HVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~~~~--~~~~~~~y~aPE~~  204 (206)
                      .........  ....+.+|+|||..
T Consensus       153 ~~~~~~~~~~~~~~~~~~y~aPE~~  177 (263)
T cd05052         153 LMTGDTYTAHAGAKFPIKWTAPESL  177 (263)
T ss_pred             ccccceeeccCCCCCccccCCHHHh
Confidence            765433221  12234579999964

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=3.4e-29  Score=189.26  Aligned_cols=171  Identities=19%  Similarity=0.285  Sum_probs=147.4

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCcc---HHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHS---TRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~---~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ..++|..++.||+|+||.|.+|+.+ +++.||+|.++++....   ...-+.|-++|+..+||.+..+...|..      
T Consensus       166 Tm~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt------  239 (516)
T KOG0690|consen  166 TMEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQT------  239 (516)
T ss_pred             ccchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhcc------
Confidence            3578999999999999999999976 89999999998775333   3345668899999999999887666644      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       .+.+|+||||..||.|.-.+...   ..+++.....+-..|..||.|||+   .+|+.||||.+|.|+|.+|.+||+||
T Consensus       240 -~drlCFVMeyanGGeLf~HLsre---r~FsE~RtRFYGaEIvsAL~YLHs---~~ivYRDlKLENLlLDkDGHIKitDF  312 (516)
T KOG0690|consen  240 -QDRLCFVMEYANGGELFFHLSRE---RVFSEDRTRFYGAEIVSALGYLHS---RNIVYRDLKLENLLLDKDGHIKITDF  312 (516)
T ss_pred             -CceEEEEEEEccCceEeeehhhh---hcccchhhhhhhHHHHHHhhhhhh---CCeeeeechhhhheeccCCceEeeec
Confidence             77899999999999998877765   458889999999999999999999   89999999999999999999999999


Q ss_pred             Cccccc-cccccccccccCccccCCCCCC
Q 028629          178 NLPLLA-ENAEKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       178 ~~a~~~-~~~~~~~~~~~~~~y~aPE~~~  205 (206)
                      |+++-. ....+....+||+.|+|||..+
T Consensus       313 GLCKE~I~~g~t~kTFCGTPEYLAPEVle  341 (516)
T KOG0690|consen  313 GLCKEEIKYGDTTKTFCGTPEYLAPEVLE  341 (516)
T ss_pred             ccchhcccccceeccccCChhhcCchhhc
Confidence            999853 4456777799999999999753

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.95  E-value=1.7e-27  Score=182.64  Aligned_cols=167  Identities=21%  Similarity=0.378  Sum_probs=139.9

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc---------cHHHHHHHHHHHhccCCCceeeeccccccccc
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH---------STRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~---------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   94 (206)
                      +|.....||.|++|.||+|... ++..+++|.+......         ..+.+.+|+.++++++|+||+++.+++..   
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---   77 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLD---   77 (267)
T ss_pred             CccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEe---
Confidence            4788899999999999999975 6889999988654322         12467889999999999999999998765   


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeE
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI  174 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl  174 (206)
                          ....++++||+++++|.+++...   ..+++..+..++.|++.|+.+||+   .+++|+||+|+||++++++.++|
T Consensus        78 ----~~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~~l~~~l~~lH~---~~ivH~di~p~nil~~~~~~~~l  147 (267)
T cd06628          78 ----ADHLNIFLEYVPGGSVAALLNNY---GAFEETLVRNFVRQILKGLNYLHN---RGIIHRDIKGANILVDNKGGIKI  147 (267)
T ss_pred             ----CCccEEEEEecCCCCHHHHHHhc---cCccHHHHHHHHHHHHHHHHHHHh---cCcccccCCHHHEEEcCCCCEEe
Confidence                56789999999999999999765   457888999999999999999999   79999999999999999999999


Q ss_pred             ccCCccccccccc-------cccccccCccccCCCCC
Q 028629          175 SSYNLPLLAENAE-------KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       175 ~df~~a~~~~~~~-------~~~~~~~~~~y~aPE~~  204 (206)
                      +|||.++......       ......++..|+|||..
T Consensus       148 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~  184 (267)
T cd06628         148 SDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVV  184 (267)
T ss_pred             cccCCCcccccccccCCccccccccCCCcCccChhHh
Confidence            9999998765321       11123567789999964

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.95  E-value=1.6e-27  Score=183.08  Aligned_cols=173  Identities=21%  Similarity=0.271  Sum_probs=143.4

Q ss_pred             HHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           20 EEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        20 ~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      +-+.+++.....||+|+||.||+|... ++..|++|.+........+.+.+|+.+++.++|+||+++++++..       
T Consensus         4 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-------   76 (268)
T cd06624           4 EYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSE-------   76 (268)
T ss_pred             ccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeecc-------
Confidence            345666777788999999999999965 688899998876555556788999999999999999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCccc--CHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC-CCceeEc
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSL--TWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-NLVAKIS  175 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~--~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~-~~~~kl~  175 (206)
                      ++..++++||+++++|.+++....  ..+  ++..+..++.|++.||.|||+   .+++|+||+|+||+++. ++.++|+
T Consensus        77 ~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~h~dl~p~nil~~~~~~~~~l~  151 (268)
T cd06624          77 NGFFKIFMEQVPGGSLSALLRSKW--GPLKDNEQTIIFYTKQILEGLKYLHD---NQIVHRDIKGDNVLVNTYSGVVKIS  151 (268)
T ss_pred             CCEEEEEEecCCCCCHHHHHHHhc--ccCCCcHHHHHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEcCCCCeEEEe
Confidence            568999999999999999987542  224  788888999999999999999   79999999999999986 6799999


Q ss_pred             cCCcccccccc-ccccccccCccccCCCCC
Q 028629          176 SYNLPLLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       176 df~~a~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      |||++...... .......++..|+|||..
T Consensus       152 dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~  181 (268)
T cd06624         152 DFGTSKRLAGINPCTETFTGTLQYMAPEVI  181 (268)
T ss_pred             cchhheecccCCCccccCCCCccccChhhh
Confidence            99999765432 222234577889999964

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.95  E-value=1.7e-27  Score=187.26  Aligned_cols=165  Identities=19%  Similarity=0.252  Sum_probs=131.9

Q ss_pred             cceeccCcceeEEEEEEe---CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEE
Q 028629           29 SAFMGEGSKGQMYRGRLK---NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI  105 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (206)
                      ++.||+|+||.||+|...   ++..+|+|.+....  ......+|+.++++++|+||+++++.+..     ......+++
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~-----~~~~~~~lv   78 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLS-----HADRKVWLL   78 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCC--CcHHHHHHHHHHHhcCCCCCcceeeeEec-----CCCcEEEEE
Confidence            468999999999999964   46789999886432  23457789999999999999999987754     224568999


Q ss_pred             EeecCCCCHHHHHhcCC------CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec----CCCceeEc
Q 028629          106 FEYVPNGTLRSWISEGH------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD----QNLVAKIS  175 (206)
Q Consensus       106 ~e~~~~~~L~~~~~~~~------~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~----~~~~~kl~  175 (206)
                      +||+.+ +|.+++....      ....+++..+..++.|++.||.|||+   .+++||||||+|||++    .++.+||+
T Consensus        79 ~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~---~~ivHrDlkp~Nil~~~~~~~~~~~kl~  154 (317)
T cd07868          79 FDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPERGRVKIA  154 (317)
T ss_pred             EeccCC-CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHh---CCEEcCCCCHHHEEEecCCCCcCcEEEe
Confidence            999865 8887765321      11358899999999999999999999   7999999999999994    55789999


Q ss_pred             cCCccccccccc----cccccccCccccCCCCC
Q 028629          176 SYNLPLLAENAE----KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       176 df~~a~~~~~~~----~~~~~~~~~~y~aPE~~  204 (206)
                      |||+++......    ......++..|+|||..
T Consensus       155 DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~  187 (317)
T cd07868         155 DMGFARLFNSPLKPLADLDPVVVTFWYRAPELL  187 (317)
T ss_pred             ecCceeccCCCCccccccCCccccccccCCHHH
Confidence            999998765432    22335778899999964

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.95  E-value=7.9e-28  Score=185.64  Aligned_cols=174  Identities=18%  Similarity=0.291  Sum_probs=139.8

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeecccccccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECY   93 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   93 (206)
                      ...++|+..+.||+|++|.||+|...      ++..||+|.+.... ......+.+|+.+++.++|+||+++++++..  
T Consensus         3 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~--   80 (277)
T cd05062           3 VAREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ--   80 (277)
T ss_pred             ccHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC--
Confidence            34678999999999999999999853      25679999885432 2334568899999999999999999988754  


Q ss_pred             ccCCCCceEEEEEeecCCCCHHHHHhcCCC-------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEe
Q 028629           94 FDDSSVSRIFLIFEYVPNGTLRSWISEGHA-------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL  166 (206)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~  166 (206)
                           ....++++||+++++|.+++.....       ....++..+..++.|++.||.|||+   .+++|+||+|+||++
T Consensus        81 -----~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~~vH~dlkp~Nil~  152 (277)
T cd05062          81 -----GQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMV  152 (277)
T ss_pred             -----CCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCcchheEEE
Confidence                 5678999999999999998865321       1235788899999999999999999   799999999999999


Q ss_pred             cCCCceeEccCCcccccccccc---ccccccCccccCCCCC
Q 028629          167 DQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  204 (206)
Q Consensus       167 ~~~~~~kl~df~~a~~~~~~~~---~~~~~~~~~y~aPE~~  204 (206)
                      ++++.++|+|||++........   .....++..|+|||..
T Consensus       153 ~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  193 (277)
T cd05062         153 AEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESL  193 (277)
T ss_pred             cCCCCEEECCCCCccccCCcceeecCCCCccCHhhcChhHh
Confidence            9999999999999875543221   1123446789999974

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.95  E-value=2.4e-27  Score=181.70  Aligned_cols=167  Identities=19%  Similarity=0.377  Sum_probs=140.7

Q ss_pred             CCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCC------ccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS------HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      +|...+.||.|+||.||+|...++..+|+|.+.....      .....+.+|++.++.++|+|++++.+++..       
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------   73 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLD-------   73 (265)
T ss_pred             CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeec-------
Confidence            4788999999999999999877888999998875431      122457889999999999999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ....++++||+++++|.+++...   ..+++..++.++.|++.++.|||+   .+++|+||+|+||++++++.++|+|||
T Consensus        74 ~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg  147 (265)
T cd06631          74 DNTISIFMEFVPGGSISSILNRF---GPLPEPVFCKYTKQILDGVAYLHN---NCVVHRDIKGNNVMLMPNGIIKLIDFG  147 (265)
T ss_pred             CCeEEEEEecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcCHHhEEECCCCeEEeccch
Confidence            56899999999999999998765   347899999999999999999999   799999999999999999999999999


Q ss_pred             cccccccc-------ccccccccCccccCCCCC
Q 028629          179 LPLLAENA-------EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~-------~~~~~~~~~~~y~aPE~~  204 (206)
                      ++......       .......++..|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  180 (265)
T cd06631         148 CARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVI  180 (265)
T ss_pred             hhHhhhhccccccccccccccCCCccccChhhh
Confidence            98764321       112234677889999974

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.95  E-value=1.5e-27  Score=184.54  Aligned_cols=167  Identities=19%  Similarity=0.328  Sum_probs=143.4

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +|+..+.||.|++|.||+|... ++..|++|.+....  ......+.+|+.++++++|+|++++++++..       +..
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-------~~~   73 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPH-------GSG   73 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEec-------CCe
Confidence            5888999999999999999975 78999999987554  3335678899999999999999999998865       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++||+ +++|.+++....  ..+++..++.++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        74 ~~~v~e~~-~~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~  147 (286)
T cd07832          74 FVLVMEYM-PSDLSEVLRDEE--RPLPEAQVKSYMRMLLKGVAYMHA---NGIMHRDLKPANLLISADGVLKIADFGLAR  147 (286)
T ss_pred             eEEEeccc-CCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCcCHHHEEEcCCCcEEEeeeeecc
Confidence            89999999 889999887543  468999999999999999999999   799999999999999999999999999998


Q ss_pred             cccccc--cccccccCccccCCCCC
Q 028629          182 LAENAE--KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~--~~~~~~~~~~y~aPE~~  204 (206)
                      ......  ......++.+|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~~~~y~aPE~~  172 (286)
T cd07832         148 LFSEEEPRLYSHQVATRWYRAPELL  172 (286)
T ss_pred             cccCCCCCccccccCcccccCceee
Confidence            765433  12334678889999974

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=2.1e-27  Score=182.03  Aligned_cols=170  Identities=19%  Similarity=0.303  Sum_probs=141.4

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-----CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-----SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .+|+..+.||+|++|.||++... ++..+++|.+....     ......+.+|++++++++|+|++++.+.+.+     .
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~-----~   76 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRD-----P   76 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEc-----C
Confidence            57999999999999999999975 79999999875321     2334578889999999999999999997754     2


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      ....+++++|++++++|.+.+...   ..+++.....++.|++.|+.+||+   .+++|+||+|+||++++++.++|+||
T Consensus        77 ~~~~~~~v~e~~~~~~L~~~~~~~---~~l~~~~~~~~~~~i~~al~~LH~---~~i~H~dl~p~ni~i~~~~~~~l~df  150 (264)
T cd06653          77 EEKKLSIFVEYMPGGSIKDQLKAY---GALTENVTRRYTRQILQGVSYLHS---NMIVHRDIKGANILRDSAGNVKLGDF  150 (264)
T ss_pred             CCCEEEEEEEeCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCEEECcc
Confidence            245688999999999999988765   347888999999999999999999   79999999999999999999999999


Q ss_pred             Cccccccccc----cccccccCccccCCCCC
Q 028629          178 NLPLLAENAE----KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~----~~~~~~~~~~y~aPE~~  204 (206)
                      |+++......    ......++..|+|||..
T Consensus       151 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  181 (264)
T cd06653         151 GASKRIQTICMSGTGIKSVTGTPYWMSPEVI  181 (264)
T ss_pred             ccccccccccccCccccccCCcccccCHhhh
Confidence            9998654321    12234677889999975

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.95  E-value=2.7e-27  Score=180.31  Aligned_cols=169  Identities=19%  Similarity=0.345  Sum_probs=144.4

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +|+..+.||+|++|.||++... ++..+++|.+....  ......+.+|+++++.++|+|++++++.+..       .+.
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-------~~~   73 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLE-------DKA   73 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEec-------CCE
Confidence            5888999999999999999975 78899999987543  3345678899999999999999999987754       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC-CceeEccCCcc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN-LVAKISSYNLP  180 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~-~~~kl~df~~a  180 (206)
                      .++++|++++++|.+++..... ..+++..+..++.|++.++.|||+   .+++|+||+|+||+++++ +.++++|||.+
T Consensus        74 ~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lh~---~~i~h~dl~~~nil~~~~~~~~~l~d~~~~  149 (256)
T cd08220          74 LMIVMEYAPGGTLAEYIQKRCN-SLLDEDTILHFFVQILLALHHVHT---KLILHRDLKTQNILLDKHKMVVKIGDFGIS  149 (256)
T ss_pred             EEEEEecCCCCCHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEEccCCCc
Confidence            9999999999999999976432 458899999999999999999999   799999999999999855 56899999999


Q ss_pred             ccccccccccccccCccccCCCCC
Q 028629          181 LLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      .............++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~~y~aPE~~  173 (256)
T cd08220         150 KILSSKSKAYTVVGTPCYISPELC  173 (256)
T ss_pred             eecCCCccccccccCCcccCchhc
Confidence            877665555556788899999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=1.4e-29  Score=205.41  Aligned_cols=172  Identities=16%  Similarity=0.313  Sum_probs=150.5

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      +...|.++..||.|+||.||++..+ ++...|-|++........+++.-||++|..++||+|+++++.|+.       .+
T Consensus        30 P~d~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~-------en  102 (1187)
T KOG0579|consen   30 PRDHWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYF-------EN  102 (1187)
T ss_pred             HHHHHHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhc-------cC
Confidence            3456888889999999999999977 566677899988888888899999999999999999999998865       67


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ++|++.|||.||....++-...  ..+.+.++.-++.|++.||.|||+   .+|+|||||..|||++-+|.++++|||.+
T Consensus       103 kLwiliEFC~GGAVDaimlEL~--r~LtE~QIqvvc~q~ldALn~LHs---~~iIHRDLKAGNiL~TldGdirLADFGVS  177 (1187)
T KOG0579|consen  103 KLWILIEFCGGGAVDAIMLELG--RVLTEDQIQVVCYQVLDALNWLHS---QNIIHRDLKAGNILLTLDGDIRLADFGVS  177 (1187)
T ss_pred             ceEEEEeecCCchHhHHHHHhc--cccchHHHHHHHHHHHHHHHHHhh---cchhhhhccccceEEEecCcEeeeccccc
Confidence            8999999999998888765443  468999999999999999999999   79999999999999999999999999999


Q ss_pred             cccccc-ccccccccCccccCCCCCC
Q 028629          181 LLAENA-EKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~y~aPE~~~  205 (206)
                      ...... .+.-...||++|||||..+
T Consensus       178 AKn~~t~qkRDsFIGTPYWMAPEVvm  203 (1187)
T KOG0579|consen  178 AKNKSTRQKRDSFIGTPYWMAPEVVM  203 (1187)
T ss_pred             ccchhHHhhhccccCCcccccchhee
Confidence            766543 4555689999999999764

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.95  E-value=9.5e-28  Score=187.69  Aligned_cols=172  Identities=27%  Similarity=0.416  Sum_probs=137.7

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcE--EEEEEeecCC-CccHHHHHHHHHHHhcc-CCCceeeeccccccccccCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTF--IAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~--vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .++|+..+.||+|+||.||+|... ++..  +++|.+.... ......+.+|++++.++ +|+||+++++++..      
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~------   79 (303)
T cd05088           6 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH------   79 (303)
T ss_pred             hhhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECC------
Confidence            467899999999999999999975 4543  5677665322 23345778899999999 89999999998865      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCC-------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccE
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHA-------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDI  164 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~-------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~ni  164 (206)
                       .+..++++||+++++|.+++.....             ...+++..++.++.|++.|+.|||+   .+++|+||+|+||
T Consensus        80 -~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~---~gi~H~dlkp~Ni  155 (303)
T cd05088          80 -RGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNI  155 (303)
T ss_pred             -CCCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHh---CCccccccchheE
Confidence             5679999999999999999865321             1357899999999999999999999   7999999999999


Q ss_pred             EecCCCceeEccCCccccccccccccccccCccccCCCCC
Q 028629          165 LLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       165 l~~~~~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ++++++.++|+|||++..............+..|+|||+.
T Consensus       156 li~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~  195 (303)
T cd05088         156 LVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESL  195 (303)
T ss_pred             EecCCCcEEeCccccCcccchhhhcccCCCcccccCHHHH
Confidence            9999999999999998744322222223345679999964

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.95  E-value=1.8e-28  Score=192.44  Aligned_cols=171  Identities=19%  Similarity=0.371  Sum_probs=141.3

Q ss_pred             hcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhcc--CCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKL--RHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .......+.+|+|.||.||+|.+. ++.||||.+...   ..+.+.+|-.+.+..  +|+||+++++.-.-....   ..
T Consensus       209 l~pl~l~eli~~Grfg~V~KaqL~-~~~VAVKifp~~---~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~---~~  281 (534)
T KOG3653|consen  209 LDPLQLLELIGRGRFGCVWKAQLD-NRLVAVKIFPEQ---EKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTAD---RM  281 (534)
T ss_pred             CCchhhHHHhhcCccceeehhhcc-CceeEEEecCHH---HHHHHHhHHHHHhccCccchhHHHhhchhccCCcc---cc
Confidence            455677888999999999999985 799999998733   345677777777665  799999998865431111   34


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcC------CCCceeccCCccccEEecCCCceeE
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTG------IVPGVFSNNLKITDILLDQNLVAKI  174 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~------~~~~i~h~dl~p~nil~~~~~~~kl  174 (206)
                      .++||++|.+.|+|.++++.+    ..+|.....++..+++||+|||+.      ++.+|+|||||..||||.+++++.|
T Consensus       282 eywLVt~fh~kGsL~dyL~~n----tisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccI  357 (534)
T KOG3653|consen  282 EYWLVTEFHPKGSLCDYLKAN----TISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCI  357 (534)
T ss_pred             ceeEEeeeccCCcHHHHHHhc----cccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEe
Confidence            689999999999999999985    589999999999999999999985      3568999999999999999999999


Q ss_pred             ccCCccccccccc---cccccccCccccCCCCC
Q 028629          175 SSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       175 ~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      +|||+|..+....   ......||..|||||..
T Consensus       358 aDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvL  390 (534)
T KOG3653|consen  358 ADFGLALRLEPGKPQGDTHGQVGTRRYMAPEVL  390 (534)
T ss_pred             eccceeEEecCCCCCcchhhhhhhhhhcCHHHH
Confidence            9999998876543   33336899999999964

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.8e-27  Score=187.04  Aligned_cols=150  Identities=22%  Similarity=0.391  Sum_probs=131.3

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc---cHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH---STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ++|+..+.||+|++|.||+|... ++..+++|.+......   ..+.+..|++.++.++|+||+++++.+..       .
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~   73 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQT-------E   73 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeec-------C
Confidence            46889999999999999999976 6899999999755322   44578889999999999999999988754       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...++++||+.+++|.+++..... ..+++.....++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||+
T Consensus        74 ~~~~lv~e~~~~~~L~~~~~~~~~-~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~~l~dfg~  149 (316)
T cd05574          74 TYLCLVMDYCPGGELFRLLQRQPG-KCLSEEVARFYAAEVLLALEYLHL---LGIVYRDLKPENILLHESGHIMLSDFDL  149 (316)
T ss_pred             CEEEEEEEecCCCCHHHHHHhCCC-CccCHHHHHHHHHHHHHHHHHHHH---CCeeccCCChHHeEEcCCCCEEEeecch
Confidence            679999999999999999875433 468899999999999999999999   7999999999999999999999999999


Q ss_pred             ccccc
Q 028629          180 PLLAE  184 (206)
Q Consensus       180 a~~~~  184 (206)
                      +....
T Consensus       150 ~~~~~  154 (316)
T cd05574         150 SKQSD  154 (316)
T ss_pred             hhccc
Confidence            87543

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.95  E-value=1.1e-27  Score=182.82  Aligned_cols=167  Identities=20%  Similarity=0.397  Sum_probs=139.8

Q ss_pred             hcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      ..+|...+.||+|++|.||++... |..+++|.++..  ...+.+.+|+.++++++|+|++++++++..      ..+..
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~------~~~~~   75 (256)
T cd05082           5 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVE------EKGGL   75 (256)
T ss_pred             HHhCeeeeeecccCCCeEEEEEEc-CCcEEEEEeCCC--chHHHHHHHHHHHHhCCCCCeeeEEEEEEc------CCCce
Confidence            467999999999999999999775 788999988643  234678899999999999999999987643      23568


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      ++++||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++++|||++..
T Consensus        76 ~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~  151 (256)
T cd05082          76 YIVTEYMAKGSLVDYLRSRGR-SVLGGDCLLKFSLDVCEAMEYLEA---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKE  151 (256)
T ss_pred             EEEEECCCCCcHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCEeccccchheEEEcCCCcEEecCCcccee
Confidence            999999999999999876433 458899999999999999999999   7999999999999999999999999999886


Q ss_pred             ccccccccccccCccccCCCCC
Q 028629          183 AENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       183 ~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ......  ....+..|+|||..
T Consensus       152 ~~~~~~--~~~~~~~y~aPE~~  171 (256)
T cd05082         152 ASSTQD--TGKLPVKWTAPEAL  171 (256)
T ss_pred             ccccCC--CCccceeecCHHHH
Confidence            544322  23445689999963

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.95  E-value=8.4e-28  Score=186.09  Aligned_cols=168  Identities=21%  Similarity=0.335  Sum_probs=141.7

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC--ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ++|+..+.||+|++|.||+|... +++.||+|.+.....  ...+.+.+|+++++.++|+|++++++++..       ..
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~   73 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRR-------KK   73 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhccc-------CC
Confidence            46889999999999999999976 689999998864332  234567889999999999999999998854       66


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..++++||++++++.++....   ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++
T Consensus        74 ~~~lv~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~~i~~~l~~LH~---~~i~h~~l~p~ni~~~~~~~~~l~dfg~~  147 (286)
T cd07846          74 RLYLVFEFVDHTVLDDLEKYP---NGLDESRVRKYLFQILRGIEFCHS---HNIIHRDIKPENILVSQSGVVKLCDFGFA  147 (286)
T ss_pred             eEEEEEecCCccHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEECCCCcEEEEeeeee
Confidence            899999999998888776554   348899999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccc-cccccccCccccCCCCC
Q 028629          181 LLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ....... ......++..|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~~~~y~aPE~~  172 (286)
T cd07846         148 RTLAAPGEVYTDYVATRWYRAPELL  172 (286)
T ss_pred             eeccCCccccCcccceeeccCcHHh
Confidence            8664432 22234677889999964

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.95  E-value=1.1e-27  Score=183.08  Aligned_cols=170  Identities=23%  Similarity=0.411  Sum_probs=140.8

Q ss_pred             HhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ..++|+..+.||+|++|.||+|...++..+++|.+..... ..+.+.+|+.++++++|++++++++++.        ...
T Consensus         4 ~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~--------~~~   74 (260)
T cd05070           4 PRESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM-SPESFLEEAQIMKKLRHDKLVQLYAVVS--------EEP   74 (260)
T ss_pred             chHHhhhhheeccccCceEEEEEecCCceeEEEEecCCCC-CHHHHHHHHHHHHhcCCCceEEEEeEEC--------CCC
Confidence            3457899999999999999999987778899999875433 3467889999999999999999988763        245


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .+++|||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        75 ~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~di~p~Nili~~~~~~~l~dfg~~~  150 (260)
T cd05070          75 IYIVTEYMSKGSLLDFLKDGEG-RALKLPNLVDMAAQVAAGMAYIER---MNYIHRDLRSANILVGDGLVCKIADFGLAR  150 (260)
T ss_pred             cEEEEEecCCCcHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCccceEEEeCCceEEeCCceeee
Confidence            7899999999999999875432 457899999999999999999999   799999999999999999999999999998


Q ss_pred             cccccccc--cccccCccccCCCCC
Q 028629          182 LAENAEKV--GHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~~~--~~~~~~~~y~aPE~~  204 (206)
                      ........  ....++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~y~aPE~~  175 (260)
T cd05070         151 LIEDNEYTARQGAKFPIKWTAPEAA  175 (260)
T ss_pred             eccCcccccccCCCCCccccChHHH
Confidence            66443211  122345679999964

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.95  E-value=2.9e-27  Score=180.33  Aligned_cols=170  Identities=17%  Similarity=0.289  Sum_probs=141.8

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      .|+..+.||+|++|.||++... +++.+++|.+....  ....+.+.+|++++++++|+|++++.+.+..      ....
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~------~~~~   74 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEG------EDGL   74 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecC------CCCE
Confidence            4888999999999999999976 68899999987543  2334568889999999999999999876532      2346


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      +++++||+++++|.+++..... ..+++.+++.++.|++.++.++|+   .+++|+||+|+||+++.++.++|+|||++.
T Consensus        75 ~~lv~e~~~~~~l~~~l~~~~~-~~l~~~~~~~~~~~l~~~l~~lH~---~~i~H~di~p~nil~~~~~~~~l~df~~~~  150 (257)
T cd08223          75 LYIVMGFCEGGDLYHKLKEQKG-KLLPENQVVEWFVQIAMALQYLHE---KHILHRDLKTQNVFLTRTNIIKVGDLGIAR  150 (257)
T ss_pred             EEEEecccCCCcHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCchhEEEecCCcEEEecccceE
Confidence            8999999999999999876432 458999999999999999999999   799999999999999999999999999998


Q ss_pred             cccccc-cccccccCccccCCCCC
Q 028629          182 LAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ...... ......++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~y~aPE~~  174 (257)
T cd08223         151 VLENQCDMASTLIGTPYYMSPELF  174 (257)
T ss_pred             EecccCCccccccCCcCccChhHh
Confidence            764432 22334677889999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.95  E-value=1.6e-27  Score=181.58  Aligned_cols=168  Identities=20%  Similarity=0.363  Sum_probs=146.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      .++|+..+.||.|++|.||++... ++..+++|.+.....  .+.+.+|++.+++++|+|++++.+.+..       ...
T Consensus         2 ~~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~-------~~~   72 (256)
T cd06612           2 EEVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVKYYGSYFK-------NTD   72 (256)
T ss_pred             cccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--HHHHHHHHHHHHhCCCCcEeeeeeeeec-------CCc
Confidence            467999999999999999999987 588999999874432  6788999999999999999999998865       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++|++++++|.+++....  ..+++..++.++.|++.|+.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        73 ~~l~~e~~~~~~L~~~l~~~~--~~l~~~~~~~~~~~l~~~l~~lh~---~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~  147 (256)
T cd06612          73 LWIVMEYCGAGSVSDIMKITN--KTLTEEEIAAILYQTLKGLEYLHS---NKKIHRDIKAGNILLNEEGQAKLADFGVSG  147 (256)
T ss_pred             EEEEEecCCCCcHHHHHHhCc--cCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEECCCCcEEEcccccch
Confidence            999999999999999987543  468999999999999999999999   799999999999999999999999999998


Q ss_pred             cccccc-cccccccCccccCCCCC
Q 028629          182 LAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ...... ......++..|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~~~y~~PE~~  171 (256)
T cd06612         148 QLTDTMAKRNTVIGTPFWMAPEVI  171 (256)
T ss_pred             hcccCccccccccCCccccCHHHH
Confidence            765443 33445678899999963

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.95  E-value=1.7e-27  Score=184.11  Aligned_cols=171  Identities=13%  Similarity=0.265  Sum_probs=138.2

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHH-HhccCCCceeeeccccccccccCCCCc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIEL-ISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~-l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ++|+..+.||+|+||.||++... +|+.||+|.++... ......+..|... ++..+|+|++++++.+..       .+
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~-------~~   73 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFR-------EG   73 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEec-------CC
Confidence            47889999999999999999976 79999999987543 2233455566665 566689999999998865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcC-CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          101 RIFLIFEYVPNGTLRSWISEG-HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ..++++||++ ++|.+++... .....+++..++.++.|++.||.|||++  .+++|+||+|+||++++++.++|+|||+
T Consensus        74 ~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~--~~i~h~dlkp~nil~~~~~~~kl~dfg~  150 (283)
T cd06617          74 DVWICMEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSK--LSVIHRDVKPSNVLINRNGQVKLCDFGI  150 (283)
T ss_pred             cEEEEhhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeeccc
Confidence            7999999996 5888777542 1225689999999999999999999983  3999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +.............++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~y~aPE~~  175 (283)
T cd06617         151 SGYLVDSVAKTIDAGCKPYMAPERI  175 (283)
T ss_pred             ccccccccccccccCCccccChhhc
Confidence            9876544333335678889999964

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.95  E-value=1.6e-27  Score=182.22  Aligned_cols=172  Identities=25%  Similarity=0.436  Sum_probs=143.3

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ...++|.+.+.||.|++|.||++...++..+++|.+... ....+.+.+|+.++++++|+|++++++.+..       ..
T Consensus         3 ~~~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~   74 (261)
T cd05034           3 IPRESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPG-TMSPEAFLQEAQIMKKLRHDKLVQLYAVCSE-------EE   74 (261)
T ss_pred             cchhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCC-ccCHHHHHHHHHHHhhCCCCCEeeeeeeeec-------CC
Confidence            346789999999999999999999777788999988743 3345678999999999999999999988754       46


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..++++|++++++|.+++..... ..+++..+..++.|++.|+.|||+   .+++|+||+|+||++++++.++++|||.+
T Consensus        75 ~~~~v~e~~~~~~L~~~i~~~~~-~~~~~~~~~~~~~~i~~al~~lh~---~~i~h~di~p~nili~~~~~~~l~d~g~~  150 (261)
T cd05034          75 PIYIVTEYMSKGSLLDFLKSGEG-KKLRLPQLVDMAAQIAEGMAYLES---RNYIHRDLAARNILVGENLVCKIADFGLA  150 (261)
T ss_pred             ceEEEEeccCCCCHHHHHhcccc-CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcchheEEEcCCCCEEECccccc
Confidence            78999999999999999976432 458899999999999999999999   79999999999999999999999999999


Q ss_pred             cccccccc--ccccccCccccCCCCC
Q 028629          181 LLAENAEK--VGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~~--~~~~~~~~~y~aPE~~  204 (206)
                      ........  ......+..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~y~~PE~~  176 (261)
T cd05034         151 RLIEDDEYTAREGAKFPIKWTAPEAA  176 (261)
T ss_pred             eeccchhhhhhhccCCCccccCHHHh
Confidence            87654221  1112234579999964

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.95  E-value=6e-28  Score=187.93  Aligned_cols=167  Identities=18%  Similarity=0.340  Sum_probs=141.7

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      ..|.....||+|+||.||++... ++..|++|.+........+.+.+|+..++.++|+|++++++.+..       .+..
T Consensus        22 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~-------~~~~   94 (292)
T cd06658          22 EYLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLV-------GDEL   94 (292)
T ss_pred             HHHhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheec-------CCeE
Confidence            44566677999999999999965 688999999876555556678899999999999999999998765       5689


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      ++++||+++++|.+++..    ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++..
T Consensus        95 ~lv~e~~~~~~L~~~~~~----~~l~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~  167 (292)
T cd06658          95 WVVMEFLEGGALTDIVTH----TRMNEEQIATVCLSVLRALSYLHN---QGVIHRDIKSDSILLTSDGRIKLSDFGFCAQ  167 (292)
T ss_pred             EEEEeCCCCCcHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEcCCCCEEEccCcchhh
Confidence            999999999999998864    347889999999999999999999   7999999999999999999999999999976


Q ss_pred             cccc-ccccccccCccccCCCCC
Q 028629          183 AENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       183 ~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      .... .......++..|+|||..
T Consensus       168 ~~~~~~~~~~~~~~~~y~aPE~~  190 (292)
T cd06658         168 VSKEVPKRKSLVGTPYWMAPEVI  190 (292)
T ss_pred             cccccccCceeecCccccCHHHH
Confidence            5332 222335678889999964

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.95  E-value=2.1e-27  Score=185.79  Aligned_cols=168  Identities=15%  Similarity=0.235  Sum_probs=140.0

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ++|...+.||+|+||.||++... +++.|++|.+....   ......+.+|+.+++.++|+||+++++.+..       .
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-------~   73 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFET-------K   73 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEec-------C
Confidence            46889999999999999999976 68899999987543   2234567889999999999999999988754       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +..+++|||+++++|.+++...   ..+++..+..++.|++.|+.|||+   .+++|+||+|+||++++++.++++|||+
T Consensus        74 ~~~~lv~e~~~g~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~NIll~~~~~~~l~dfg~  147 (305)
T cd05609          74 RHLCMVMEYVEGGDCATLLKNI---GALPVDMARMYFAETVLALEYLHN---YGIVHRDLKPDNLLITSMGHIKLTDFGL  147 (305)
T ss_pred             CEEEEEEecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCchHHEEECCCCCEEEeeCCC
Confidence            6789999999999999999765   358899999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccc----------------cccccccCccccCCCCC
Q 028629          180 PLLAENAE----------------KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~----------------~~~~~~~~~~y~aPE~~  204 (206)
                      ++......                ......++..|+|||+.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  188 (305)
T cd05609         148 SKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVI  188 (305)
T ss_pred             ccccCcCccccccccccccchhhccccCCccCccccCchhc
Confidence            87421111                01113467789999974

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.95  E-value=1.4e-27  Score=184.70  Aligned_cols=172  Identities=25%  Similarity=0.409  Sum_probs=140.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CC-----cEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NG-----TFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~-----~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      .++|+..+.||+|++|.||+|... .+     ..+++|.+.... ......+.+|+.++++++|+||+++++++..    
T Consensus         4 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~----   79 (283)
T cd05048           4 LSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTK----   79 (283)
T ss_pred             hHHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcC----
Confidence            357899999999999999999864 22     578999886443 2334568899999999999999999998764    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCC-------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHA-------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKIT  162 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~-------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~  162 (206)
                         ....++++||+++++|.+++.....             ...+++..++.++.|++.||.|||+   .+++|+||+|+
T Consensus        80 ---~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~---~~i~H~dlkp~  153 (283)
T cd05048          80 ---EQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSS---HHFVHRDLAAR  153 (283)
T ss_pred             ---CCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccccc
Confidence               4578999999999999999875321             1347888999999999999999999   79999999999


Q ss_pred             cEEecCCCceeEccCCccccccccc---cccccccCccccCCCCC
Q 028629          163 DILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       163 nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      ||++++++.++|+|||++.......   ......++..|+|||+.
T Consensus       154 Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  198 (283)
T cd05048         154 NCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAI  198 (283)
T ss_pred             eEEEcCCCcEEECCCcceeeccccccccccCCCcccccccCHHHh
Confidence            9999999999999999997653321   22234556789999964

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.95  E-value=3.3e-27  Score=180.58  Aligned_cols=168  Identities=18%  Similarity=0.407  Sum_probs=143.7

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC--ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +|...+.||+|++|.||++... ++..+++|.+.....  ...+.+.+|+++++.++|+||+++++.+..       .+.
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-------~~~   73 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVH-------REK   73 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEec-------CCE
Confidence            5888999999999999999965 788999999876543  356788999999999999999999998754       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++||+++++|.+++...   ..+++..++.++.|++.|+.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        74 ~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~i~~~i~~~l~~lh~---~~i~H~dl~~~nil~~~~~~~kl~d~g~~~  147 (264)
T cd06626          74 VYIFMEYCSGGTLEELLEHG---RILDEHVIRVYTLQLLEGLAYLHS---HGIVHRDIKPANIFLDHNGVIKLGDFGCAV  147 (264)
T ss_pred             EEEEEecCCCCcHHHHHhhc---CCCChHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEccccccc
Confidence            99999999999999998765   347889999999999999999999   799999999999999999999999999998


Q ss_pred             cccccccc-----cccccCccccCCCCCC
Q 028629          182 LAENAEKV-----GHVTPYSGSINPTNSA  205 (206)
Q Consensus       182 ~~~~~~~~-----~~~~~~~~y~aPE~~~  205 (206)
                      ........     ....++..|+|||...
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~PE~~~  176 (264)
T cd06626         148 KLKNNTTTMGEEVQSLAGTPAYMAPEVIT  176 (264)
T ss_pred             ccCCCCCcccccccCCcCCcCccChhhcc
Confidence            76543221     1245677899999753

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.95  E-value=2.4e-27  Score=184.16  Aligned_cols=170  Identities=18%  Similarity=0.273  Sum_probs=139.1

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      +.++|...+.||+|++|.||+|... ++..|++|.+.... ......+.+|+.+++.++|+|++++.+++..       .
T Consensus         3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~-------~   75 (291)
T cd07870           3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHT-------K   75 (291)
T ss_pred             ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEec-------C
Confidence            3578999999999999999999975 78899999986543 2223467789999999999999999998754       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...++++||+. +++.+++....  ..+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||+
T Consensus        76 ~~~~lv~e~~~-~~l~~~~~~~~--~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~Dfg~  149 (291)
T cd07870          76 ETLTFVFEYMH-TDLAQYMIQHP--GGLHPYNVRLFMFQLLRGLAYIHG---QHILHRDLKPQNLLISYLGELKLADFGL  149 (291)
T ss_pred             CeEEEEEeccc-CCHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChHHEEEcCCCcEEEecccc
Confidence            67899999996 57777665432  346788888999999999999999   7999999999999999999999999999


Q ss_pred             ccccccc-ccccccccCccccCCCCC
Q 028629          180 PLLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      ++..... .......++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~y~aPE~~  175 (291)
T cd07870         150 ARAKSIPSQTYSSEVVTLWYRPPDVL  175 (291)
T ss_pred             ccccCCCCCCCCCccccccccCCcee
Confidence            9764332 222334567889999974

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.95  E-value=1.5e-27  Score=184.12  Aligned_cols=172  Identities=22%  Similarity=0.406  Sum_probs=141.8

Q ss_pred             hcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCCCc-cHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      ..+|...+.||+|++|.||+|...      ++..||+|.++..... ..+.+.+|++++++++|+|++++++++..    
T Consensus         4 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~----   79 (280)
T cd05049           4 RDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTE----   79 (280)
T ss_pred             hHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEec----
Confidence            456888999999999999999864      2478999998755433 45688999999999999999999998865    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCC-----------CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccE
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGH-----------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDI  164 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~-----------~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~ni  164 (206)
                         ....+++|||+++++|.+++....           ....+++..+..++.|++.|+.+||+   .+++|+||+|+||
T Consensus        80 ---~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~---~~i~h~dlkp~ni  153 (280)
T cd05049          80 ---GDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLAS---QHFVHRDLATRNC  153 (280)
T ss_pred             ---CCCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhh---CCeeccccccceE
Confidence               567999999999999999986532           11347888999999999999999999   7999999999999


Q ss_pred             EecCCCceeEccCCccccccccc---cccccccCccccCCCCC
Q 028629          165 LLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       165 l~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      +++.++.++|+|||++.......   ......++..|+|||..
T Consensus       154 li~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  196 (280)
T cd05049         154 LVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESI  196 (280)
T ss_pred             EEcCCCeEEECCcccceecccCcceecCCCCcccceecChhhh
Confidence            99999999999999997553322   12233456789999964

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.95  E-value=2.5e-27  Score=181.10  Aligned_cols=173  Identities=16%  Similarity=0.287  Sum_probs=144.0

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +|+..+.||.|++|.||++... ++..+++|.+....  ....+.+.+|++.+++++|+|++++++.+..     .....
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~~   75 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIID-----RSNQT   75 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeec-----CCCCE
Confidence            4788899999999999999965 78899999987543  2334568889999999999999999987653     22457


Q ss_pred             EEEEEeecCCCCHHHHHhcC-CCCcccCHHHHHHHHHHHHHHHHHHh-----cCCCCceeccCCccccEEecCCCceeEc
Q 028629          102 IFLIFEYVPNGTLRSWISEG-HAWQSLTWTQRISAAIGVARGIQFLH-----TGIVPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~lH-----~~~~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                      .++++||+++++|.+++... .....+++..++.++.|++.|+.+||     +   .+++|+||+|+||++++++.++|+
T Consensus        76 ~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~---~~i~h~dl~p~nili~~~~~~kl~  152 (265)
T cd08217          76 LYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPG---NTVLHRDLKPANIFLDANNNVKLG  152 (265)
T ss_pred             EEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCcccc---CcceecCCCHHHEEEecCCCEEEe
Confidence            89999999999999998653 11256899999999999999999999     6   799999999999999999999999


Q ss_pred             cCCcccccccccc-ccccccCccccCCCCCC
Q 028629          176 SYNLPLLAENAEK-VGHVTPYSGSINPTNSA  205 (206)
Q Consensus       176 df~~a~~~~~~~~-~~~~~~~~~y~aPE~~~  205 (206)
                      |||++........ .....++..|+|||...
T Consensus       153 d~g~~~~~~~~~~~~~~~~~~~~~~~pE~~~  183 (265)
T cd08217         153 DFGLAKILGHDSSFAKTYVGTPYYMSPEQLN  183 (265)
T ss_pred             cccccccccCCcccccccccCCCccChhhhc
Confidence            9999988765443 33456788999999753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.95  E-value=2.1e-27  Score=183.98  Aligned_cols=171  Identities=20%  Similarity=0.383  Sum_probs=140.4

Q ss_pred             cCCcccceeccCcceeEEEEEE-----eCCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRL-----KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~-----~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      +.|+..+.||+|+||.||++..     .++..|++|.+.... ......+.+|+++++.+.|+|++++.+++..     .
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~   78 (284)
T cd05079           4 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTE-----D   78 (284)
T ss_pred             hhhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEec-----C
Confidence            4578999999999999999984     257889999986443 3344678899999999999999999987754     2


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      .....++++||+++++|.+++....  ..+++..++.++.|++.||.|+|+   .+++|+||+|+||++++++.++|+||
T Consensus        79 ~~~~~~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~i~~~i~~aL~~lH~---~gi~H~dlkp~Nil~~~~~~~~l~df  153 (284)
T cd05079          79 GGNGIKLIMEFLPSGSLKEYLPRNK--NKINLKQQLKYAVQICKGMDYLGS---RQYVHRDLAARNVLVESEHQVKIGDF  153 (284)
T ss_pred             CCCceEEEEEccCCCCHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccchheEEEcCCCCEEECCC
Confidence            2356899999999999999986543  358999999999999999999999   79999999999999999999999999


Q ss_pred             Ccccccccccc----ccccccCccccCCCCC
Q 028629          178 NLPLLAENAEK----VGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~----~~~~~~~~~y~aPE~~  204 (206)
                      |+++.......    .....++..|+|||..
T Consensus       154 g~~~~~~~~~~~~~~~~~~~~~~~y~apE~~  184 (284)
T cd05079         154 GLTKAIETDKEYYTVKDDLDSPVFWYAPECL  184 (284)
T ss_pred             ccccccccCccceeecCCCCCCccccCHHHh
Confidence            99986644321    1223455679999963

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.95  E-value=1.9e-27  Score=184.06  Aligned_cols=167  Identities=16%  Similarity=0.292  Sum_probs=138.8

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +|+..+.||+|++|.||+|... +|..+++|.+....  ......+.+|+.++++++|+|++++++.+.+       ...
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~-------~~~   73 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHS-------DKK   73 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhcc-------CCc
Confidence            5788899999999999999976 78999999987542  2223567789999999999999999998865       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++||+++ +|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||+++
T Consensus        74 ~~lv~e~~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~al~~LH~---~~i~H~dl~~~nil~~~~~~~~l~dfg~~~  147 (284)
T cd07839          74 LTLVFEYCDQ-DLKKYFDSCN--GDIDPEIVKSFMFQLLKGLAFCHS---HNVLHRDLKPQNLLINKNGELKLADFGLAR  147 (284)
T ss_pred             eEEEEecCCC-CHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEEcCCCcEEECccchhh
Confidence            9999999975 7887776532  458999999999999999999999   799999999999999999999999999998


Q ss_pred             cccccc-cccccccCccccCCCCC
Q 028629          182 LAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ...... ......++..|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~~~y~aPE~~  171 (284)
T cd07839         148 AFGIPVRCYSAEVVTLWYRPPDVL  171 (284)
T ss_pred             ccCCCCCCcCCCccccCCcChHHH
Confidence            654332 22234567889999953

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.95  E-value=2.1e-27  Score=203.00  Aligned_cols=168  Identities=18%  Similarity=0.306  Sum_probs=143.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|.+.+.||+|+||.||+|... +++.||+|++....   ......+..|+.++..++|+||++++..+..       
T Consensus         3 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~-------   75 (669)
T cd05610           3 IEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQS-------   75 (669)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEE-------
Confidence            467999999999999999999976 78999999997543   2223567889999999999999999987754       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ....+++|||+.+++|.+++...   ..+++..++.++.|++.||.|||.   .+|+|+||||+|||++.++.++|+|||
T Consensus        76 ~~~~~lVmEy~~g~~L~~li~~~---~~l~~~~~~~i~~qil~aL~yLH~---~gIiHrDLKP~NILl~~~g~vkL~DFG  149 (669)
T cd05610          76 ANNVYLVMEYLIGGDVKSLLHIY---GYFDEEMAVKYISEVALALDYLHR---HGIIHRDLKPDNMLISNEGHIKLTDFG  149 (669)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCccHHHEEEcCCCCEEEEeCC
Confidence            56899999999999999998765   357889999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccc-cccccccCccccCCCC
Q 028629          179 LPLLAENAE-KVGHVTPYSGSINPTN  203 (206)
Q Consensus       179 ~a~~~~~~~-~~~~~~~~~~y~aPE~  203 (206)
                      +++...... ......+++.|++||.
T Consensus       150 ls~~~~~~~~~~~~~~~t~~~~~pe~  175 (669)
T cd05610         150 LSKVTLNRELNMMDILTTPSMAKPKN  175 (669)
T ss_pred             CCccccCCcccccccccCccccCccc
Confidence            998765432 3334577788888874

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.95  E-value=1.8e-27  Score=182.87  Aligned_cols=169  Identities=24%  Similarity=0.431  Sum_probs=138.3

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CC---cEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NG---TFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~---~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      +.|+..+.||+|+||.||+|... ++   ..|++|.++... ......+..|+.+++.++|+|++++.+.+..       
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~-------   76 (269)
T cd05065           4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTK-------   76 (269)
T ss_pred             HHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECC-------
Confidence            45888999999999999999975 33   369999987542 3345678999999999999999999998754       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ....++++||+++++|.+++....  ..+++..++.++.|++.|+.|||+   .+++|+||+|+||++++++.++++|||
T Consensus        77 ~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~~l~~al~~lH~---~g~~H~dl~p~nili~~~~~~kl~dfg  151 (269)
T cd05065          77 SRPVMIITEFMENGALDSFLRQND--GQFTVIQLVGMLRGIAAGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFG  151 (269)
T ss_pred             CCceEEEEecCCCCcHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccChheEEEcCCCcEEECCCc
Confidence            567899999999999999987643  357899999999999999999999   799999999999999999999999999


Q ss_pred             cccccccccccccc------ccCccccCCCCC
Q 028629          179 LPLLAENAEKVGHV------TPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~~~~~~------~~~~~y~aPE~~  204 (206)
                      ++............      ..+..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~  183 (269)
T cd05065         152 LSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAI  183 (269)
T ss_pred             cccccccCccccccccccCCCcceeecCHhHh
Confidence            99765432211111      113469999975

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.95  E-value=1.8e-27  Score=184.16  Aligned_cols=169  Identities=22%  Similarity=0.368  Sum_probs=137.8

Q ss_pred             cCC-cccceeccCcceeEEEEEE-----eCCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           24 NNF-DTSAFMGEGSKGQMYRGRL-----KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        24 ~~~-~~~~~lg~g~~g~v~~~~~-----~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      ++| ...+.||+|+||.||++..     .++..||+|.+.... ......+.+|++++++++|+|++++.+++..     
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----   77 (283)
T cd05080           3 KRYLKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSE-----   77 (283)
T ss_pred             hhhceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-----
Confidence            345 8889999999999988653     257789999987543 2345678889999999999999999987754     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                      ......+++|||+++++|.+++...    .+++..++.++.|++.|+.|||+   .+++|+||+|+||++++++.++|+|
T Consensus        78 ~~~~~~~lv~e~~~~~~l~~~~~~~----~l~~~~~~~i~~~l~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~~l~d  150 (283)
T cd05080          78 QGGKGLQLIMEYVPLGSLRDYLPKH----KLNLAQLLLFAQQICEGMAYLHS---QHYIHRDLAARNVLLDNDRLVKIGD  150 (283)
T ss_pred             CCCceEEEEecCCCCCCHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHHH---CCeeccccChheEEEcCCCcEEEee
Confidence            2234689999999999999998763    48999999999999999999999   7999999999999999999999999


Q ss_pred             CCcccccccccc----ccccccCccccCCCCC
Q 028629          177 YNLPLLAENAEK----VGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~~~----~~~~~~~~~y~aPE~~  204 (206)
                      ||++........    .....++..|+|||..
T Consensus       151 fg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~  182 (283)
T cd05080         151 FGLAKAVPEGHEYYRVREDGDSPVFWYAVECL  182 (283)
T ss_pred             cccccccCCcchhhccCCCCCCCceeeCHhHh
Confidence            999987654322    1112344569999964

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.95  E-value=1.9e-27  Score=182.66  Aligned_cols=170  Identities=23%  Similarity=0.415  Sum_probs=139.2

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CC---cEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NG---TFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~---~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ..+|+..+.||+|+||.||+|... ++   ..+++|.++... ....+.+.+|+.++++++||||+++++++..      
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~------   76 (267)
T cd05066           3 ASCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTK------   76 (267)
T ss_pred             HHHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec------
Confidence            457889999999999999999864 33   378999886443 2334678889999999999999999998754      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       .+..+++|||+++++|.+++....  ..+++..++.++.|++.|+.+||+   .+++|+||+|+||++++++.++++||
T Consensus        77 -~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH~---~~i~h~dlkp~nili~~~~~~~l~df  150 (267)
T cd05066          77 -SKPVMIVTEYMENGSLDAFLRKHD--GQFTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNILVNSNLVCKVSDF  150 (267)
T ss_pred             -CCccEEEEEcCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHH---CCEeehhhchhcEEECCCCeEEeCCC
Confidence             567899999999999999987643  357899999999999999999999   79999999999999999999999999


Q ss_pred             Cccccccccccc----cccccCccccCCCCC
Q 028629          178 NLPLLAENAEKV----GHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~----~~~~~~~~y~aPE~~  204 (206)
                      |++.........    ....++..|+|||+.
T Consensus       151 g~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~  181 (267)
T cd05066         151 GLSRVLEDDPEAAYTTRGGKIPIRWTAPEAI  181 (267)
T ss_pred             CcccccccccceeeecCCCccceeecCHhHh
Confidence            999876543211    111224579999974

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.95  E-value=1.3e-27  Score=185.46  Aligned_cols=172  Identities=23%  Similarity=0.406  Sum_probs=141.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      .++|...+.||+|+||.||++...      ++..+++|.+..........+.+|++++++++|+|++++++++..     
T Consensus         4 ~~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----   78 (288)
T cd05093           4 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVE-----   78 (288)
T ss_pred             hHHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-----
Confidence            467899999999999999999842      345688998875554556678999999999999999999998865     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCC----------CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEe
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGH----------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL  166 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~  166 (206)
                        .+..++++||+++++|.+++....          ....+++..++.++.|++.||.|||+   .+++|+||+|+||++
T Consensus        79 --~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~---~~i~H~dlkp~Nili  153 (288)
T cd05093          79 --GDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLV  153 (288)
T ss_pred             --CCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccCcceEEE
Confidence              567899999999999999986432          11348999999999999999999999   799999999999999


Q ss_pred             cCCCceeEccCCcccccccccc---ccccccCccccCCCCC
Q 028629          167 DQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  204 (206)
Q Consensus       167 ~~~~~~kl~df~~a~~~~~~~~---~~~~~~~~~y~aPE~~  204 (206)
                      ++++.++|+|||++........   .....++..|+|||..
T Consensus       154 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  194 (288)
T cd05093         154 GENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESI  194 (288)
T ss_pred             ccCCcEEeccCCccccccCCceeecCCCCCccccccCHHHh
Confidence            9999999999999986543221   1223345679999964

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.95  E-value=4.8e-27  Score=179.98  Aligned_cols=171  Identities=13%  Similarity=0.276  Sum_probs=144.0

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ++|+..+.||+|++|.||+|... ++..|++|.++...   ....+.+.+|++++++++|+|++++++.+..       .
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~-------~   74 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIE-------N   74 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeec-------C
Confidence            57999999999999999999976 89999999886432   2335678899999999999999999998865       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcC-CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629          100 SRIFLIFEYVPNGTLRSWISEG-HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      +..+++|||+++++|.+++... .....+++..++.++.|++.|+.|||+   .+++|+||+|+||++++++.++|+|||
T Consensus        75 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl~p~nil~~~~~~~~l~d~~  151 (267)
T cd08224          75 NELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHS---KRIMHRDIKPANVFITATGVVKLGDLG  151 (267)
T ss_pred             CeEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHh---CCEecCCcChhhEEECCCCcEEEeccc
Confidence            6789999999999999988642 112458899999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccc-cccccccCccccCCCCC
Q 028629          179 LPLLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ++....... ......++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~y~apE~~  178 (267)
T cd08224         152 LGRFFSSKTTAAHSLVGTPYYMSPERI  178 (267)
T ss_pred             eeeeccCCCcccceecCCccccCHHHh
Confidence            987654332 22334677889999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.95  E-value=1.1e-27  Score=186.76  Aligned_cols=166  Identities=19%  Similarity=0.327  Sum_probs=141.3

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEE
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~  103 (206)
                      -|.....||.|+||.||++... ++..|++|.+........+.+.+|+..++.+.|+|++++++.+..       ++..+
T Consensus        22 ~~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~-------~~~~~   94 (297)
T cd06659          22 LLENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLV-------GEELW   94 (297)
T ss_pred             hHHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheee-------CCeEE
Confidence            3555667999999999999975 789999999976555556678899999999999999999998765       56899


Q ss_pred             EEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccc
Q 028629          104 LIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  183 (206)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~  183 (206)
                      +++||+++++|.+++..    ..+++..++.++.|++.||.+||+   .+++|+||+|+||++++++.++|+|||++...
T Consensus        95 iv~e~~~~~~L~~~~~~----~~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~  167 (297)
T cd06659          95 VLMEFLQGGALTDIVSQ----TRLNEEQIATVCESVLQALCYLHS---QGVIHRDIKSDSILLTLDGRVKLSDFGFCAQI  167 (297)
T ss_pred             EEEecCCCCCHHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHeEEccCCcEEEeechhHhhc
Confidence            99999999999987755    347899999999999999999999   79999999999999999999999999999765


Q ss_pred             ccc-ccccccccCccccCCCCC
Q 028629          184 ENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       184 ~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      ... .......++..|+|||..
T Consensus       168 ~~~~~~~~~~~~~~~y~aPE~~  189 (297)
T cd06659         168 SKDVPKRKSLVGTPYWMAPEVI  189 (297)
T ss_pred             ccccccccceecCccccCHHHH
Confidence            433 223345688899999964

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.2e-28  Score=205.09  Aligned_cols=173  Identities=24%  Similarity=0.400  Sum_probs=145.5

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCCCc-cHHHHHHHHHHHhccCCCceeeeccccccccc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   94 (206)
                      ...+-...+.||+|.||.||+|...      +...||||.++..... ..++|.+|++++..++|+||++++|+|..   
T Consensus       484 ~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~---  560 (774)
T KOG1026|consen  484 PRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCRE---  560 (774)
T ss_pred             chhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEcc---
Confidence            3456778889999999999999953      2346999999866655 66799999999999999999999999987   


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCC-----------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCcccc
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHA-----------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITD  163 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-----------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~n  163 (206)
                          ++.+++|+||+..|+|.+|+.....           ..+++..+.+.+|.||+.||.||-+   ..++||||-.+|
T Consensus       561 ----~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~---~~FVHRDLATRN  633 (774)
T KOG1026|consen  561 ----GDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSS---HHFVHRDLATRN  633 (774)
T ss_pred             ----CCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh---Ccccccchhhhh
Confidence                6789999999999999999964311           2348999999999999999999999   799999999999


Q ss_pred             EEecCCCceeEccCCcccccccc--cccc-ccccCccccCCCCC
Q 028629          164 ILLDQNLVAKISSYNLPLLAENA--EKVG-HVTPYSGSINPTNS  204 (206)
Q Consensus       164 il~~~~~~~kl~df~~a~~~~~~--~~~~-~~~~~~~y~aPE~~  204 (206)
                      +||.++..|||+|||+++-+-+.  .+.. ...-...+|+||.+
T Consensus       634 CLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsI  677 (774)
T KOG1026|consen  634 CLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESI  677 (774)
T ss_pred             ceeccceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHh
Confidence            99999999999999999855332  2322 34556679999975

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.95  E-value=2.2e-27  Score=181.55  Aligned_cols=169  Identities=24%  Similarity=0.411  Sum_probs=139.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      ..+|...+.||+|++|.||++...++..+++|.+... ....+.+.+|+.++++++|+|++++++++.        .+..
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~--------~~~~   75 (260)
T cd05069           5 RESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPG-TMMPEAFLQEAQIMKKLRHDKLVPLYAVVS--------EEPI   75 (260)
T ss_pred             hHHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccC-CccHHHHHHHHHHHHhCCCCCeeeEEEEEc--------CCCc
Confidence            4568999999999999999999776667999987633 334567888999999999999999988653        3457


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      +++|||+.+++|.+++..... ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++..
T Consensus        76 ~~v~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~  151 (260)
T cd05069          76 YIVTEFMGKGSLLDFLKEGDG-KYLKLPQLVDMAAQIADGMAYIER---MNYIHRDLRAANILVGDNLVCKIADFGLARL  151 (260)
T ss_pred             EEEEEcCCCCCHHHHHhhCCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCEeecccCcceEEEcCCCeEEECCCccceE
Confidence            899999999999999876432 457899999999999999999999   7999999999999999999999999999986


Q ss_pred             ccccccc--cccccCccccCCCCC
Q 028629          183 AENAEKV--GHVTPYSGSINPTNS  204 (206)
Q Consensus       183 ~~~~~~~--~~~~~~~~y~aPE~~  204 (206)
                      .......  ....++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~y~~Pe~~  175 (260)
T cd05069         152 IEDNEYTARQGAKFPIKWTAPEAA  175 (260)
T ss_pred             ccCCcccccCCCccchhhCCHHHh
Confidence            6433211  123445679999964

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.95  E-value=2.2e-28  Score=196.49  Aligned_cols=172  Identities=19%  Similarity=0.342  Sum_probs=145.0

Q ss_pred             HhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCcc-HHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHS-TRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      +.....++++||+|-||+|-+|...++..||+|.+....... ..+|..|+++|.+++||||+.+.++|..       ++
T Consensus       536 PRs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~-------De  608 (807)
T KOG1094|consen  536 PRSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQ-------DD  608 (807)
T ss_pred             chhheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeec-------CC
Confidence            345678889999999999999998777999999998665444 4789999999999999999999999987       67


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      .+|+++||+++|+|.+++..... +.........++.||+.||+||.+   .+++||||.+.|+|++.++++||+|||++
T Consensus       609 PicmI~EYmEnGDLnqFl~ahea-pt~~t~~~vsi~tqiasgmaYLes---~nfVHrd~a~rNcLv~~e~~iKiadfgms  684 (807)
T KOG1094|consen  609 PLCMITEYMENGDLNQFLSAHEL-PTAETAPGVSICTQIASGMAYLES---LNFVHRDLATRNCLVDGEFTIKIADFGMS  684 (807)
T ss_pred             chHHHHHHHhcCcHHHHHHhccC-cccccchhHHHHHHHHHHHHHHHh---hchhhccccccceeecCcccEEecCcccc
Confidence            89999999999999999987643 334666677799999999999999   89999999999999999999999999999


Q ss_pred             cccccc---ccccccccCccccCCCCC
Q 028629          181 LLAENA---EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~---~~~~~~~~~~~y~aPE~~  204 (206)
                      +-+-+.   ...+...-...|||||.+
T Consensus       685 R~lysg~yy~vqgr~vlpiRwmawEsi  711 (807)
T KOG1094|consen  685 RNLYSGDYYRVQGRAVLPIRWMAWESI  711 (807)
T ss_pred             cccccCCceeeecceeeeeeehhHHHH
Confidence            854332   122233445679999863

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.95  E-value=2.7e-27  Score=181.54  Aligned_cols=167  Identities=19%  Similarity=0.323  Sum_probs=140.6

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC------ccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS------HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      +|+..+.||+|++|.||++... +++.+++|++.....      ...+.+.+|+..+++++|+|++++++.+..      
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------   74 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCE------   74 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceecc------
Confidence            5888899999999999999964 789999999874431      124578899999999999999999998865      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC-ceeEcc
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-VAKISS  176 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~-~~kl~d  176 (206)
                       .+..++++||+.+++|.+++...   ..+++..++.++.|++.||.+||+   .+++|+||+|+||+++.++ .++|+|
T Consensus        75 -~~~~~~v~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~ql~~al~~LH~---~~i~H~~i~~~nil~~~~~~~~~l~d  147 (268)
T cd06630          75 -DSHFNLFVEWMAGGSVSHLLSKY---GAFKEAVIINYTEQLLRGLSYLHE---NQIIHRDVKGANLLIDSTGQRLRIAD  147 (268)
T ss_pred             -CCeEEEEEeccCCCcHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEEcc
Confidence             56789999999999999998765   458899999999999999999999   7999999999999998765 699999


Q ss_pred             CCccccccccc-----cccccccCccccCCCCC
Q 028629          177 YNLPLLAENAE-----KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~~-----~~~~~~~~~~y~aPE~~  204 (206)
                      ||.+.......     ......++..|+|||..
T Consensus       148 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~  180 (268)
T cd06630         148 FGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVL  180 (268)
T ss_pred             cccccccccccccCCccccccccccceeCHhHh
Confidence            99997665432     12234677889999964

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.95  E-value=2.5e-27  Score=184.78  Aligned_cols=171  Identities=26%  Similarity=0.400  Sum_probs=137.0

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCc--EEEEEEeecCC-CccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGT--FIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~--~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ++|++.+.||+|+||.||+|... ++.  .+++|.++... ....+.+.+|+++++++ +|+|++++++.+..       
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~-------   74 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACEN-------   74 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEcc-------
Confidence            57899999999999999999975 443  46888776322 33446788899999999 79999999998754       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCC-------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEE
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHA-------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL  165 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~-------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil  165 (206)
                      .+..++++||+++++|.+++.....             ...+++..++.++.|++.|+.|||+   .+++|+||+|+||+
T Consensus        75 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~---~~ivH~dlkp~Nil  151 (297)
T cd05089          75 RGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSE---KQFIHRDLAARNVL  151 (297)
T ss_pred             CCcceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCcCCcceEE
Confidence            5678999999999999999865321             1247889999999999999999999   79999999999999


Q ss_pred             ecCCCceeEccCCccccccccccccccccCccccCCCCC
Q 028629          166 LDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       166 ~~~~~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +++++.++|+|||++..............+..|+|||..
T Consensus       152 l~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~  190 (297)
T cd05089         152 VGENLASKIADFGLSRGEEVYVKKTMGRLPVRWMAIESL  190 (297)
T ss_pred             ECCCCeEEECCcCCCccccceeccCCCCcCccccCchhh
Confidence            999999999999998754332222222334579999975

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.95  E-value=3.8e-27  Score=180.43  Aligned_cols=171  Identities=16%  Similarity=0.299  Sum_probs=144.8

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ++|+..+.||.|++|.||+|... ++..+++|++.... ....+.+.+|++.++.++|+|++++.+.+..       ...
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~   73 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVV-------GDE   73 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEee-------CCE
Confidence            47899999999999999999965 68899999987543 3355778999999999999999999987755       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++|++++++|.+.+........+++...+.++.|++.|+.+||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        74 ~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~---~~i~h~~l~p~ni~~~~~~~~~l~df~~~~  150 (267)
T cd06610          74 LWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHS---NGQIHRDIKAGNILLGEDGSVKIADFGVSA  150 (267)
T ss_pred             EEEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHhEEEcCCCCEEEcccchHH
Confidence            99999999999999998764222358899999999999999999999   799999999999999999999999999998


Q ss_pred             cccccccc-----cccccCccccCCCCC
Q 028629          182 LAENAEKV-----GHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~~~-----~~~~~~~~y~aPE~~  204 (206)
                      ........     ....++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~y~~Pe~~  178 (267)
T cd06610         151 SLADGGDRTRKVRKTFVGTPCWMAPEVM  178 (267)
T ss_pred             HhccCccccccccccccCChhhcChHHH
Confidence            66543322     334677889999975

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.95  E-value=1.5e-28  Score=184.64  Aligned_cols=174  Identities=22%  Similarity=0.269  Sum_probs=144.7

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe---C--CcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeecccccccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK---N--GTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECY   93 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~---~--~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   93 (206)
                      .....|+....||+|++|.||+|...   +  ...+|||.++.++  ........+|+.+++.++|+|++.+..++++  
T Consensus        21 e~l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~--   98 (438)
T KOG0666|consen   21 EDLFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLS--   98 (438)
T ss_pred             HHHHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhc--
Confidence            44567999999999999999999743   2  2368999887553  3456678889999999999999999998876  


Q ss_pred             ccCCCCceEEEEEeecCCCCHHHHHhcC--CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC--
Q 028629           94 FDDSSVSRIFLIFEYVPNGTLRSWISEG--HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN--  169 (206)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~--  169 (206)
                          .+.+.++++||.+. +|.+++.-.  .....++...+..+..||+.|+.|||+   .=|+||||||.||||.-+  
T Consensus        99 ----~d~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~---NWvlHRDLKPaNIlvmgdgp  170 (438)
T KOG0666|consen   99 ----HDKKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHS---NWVLHRDLKPANILVMGDGP  170 (438)
T ss_pred             ----cCceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhh---hheeeccCCcceEEEeccCC
Confidence                25689999999987 999988642  122468889999999999999999999   478999999999999855  


Q ss_pred             --CceeEccCCcccccccccccc----ccccCccccCCCCC
Q 028629          170 --LVAKISSYNLPLLAENAEKVG----HVTPYSGSINPTNS  204 (206)
Q Consensus       170 --~~~kl~df~~a~~~~~~~~~~----~~~~~~~y~aPE~~  204 (206)
                        |.+||+|||+++++.++.++.    .+.-|.+|+|||..
T Consensus       171 erG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELL  211 (438)
T KOG0666|consen  171 ERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELL  211 (438)
T ss_pred             ccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHh
Confidence              999999999999988775443    36788999999963

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.95  E-value=1.4e-28  Score=202.83  Aligned_cols=170  Identities=24%  Similarity=0.407  Sum_probs=144.2

Q ss_pred             cCCcccceeccCcceeEEEEEEe-C---CcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-N---GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~---~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      +...+.++||.|.||+|+.|+++ .   ...||||.++... .....+|+.|..+|.+++||||+++-++...       
T Consensus       629 s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTk-------  701 (996)
T KOG0196|consen  629 SCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTK-------  701 (996)
T ss_pred             hheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEec-------
Confidence            34467789999999999999975 3   3479999998654 4556789999999999999999999999865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ....+|++||+++|+|..|+..+.+  .+++.++..+.+.|+.||.||-+   .+++||||..+||||+.+..+||+|||
T Consensus       702 s~PvMIiTEyMENGsLDsFLR~~DG--qftviQLVgMLrGIAsGMkYLsd---m~YVHRDLAARNILVNsnLvCKVsDFG  776 (996)
T KOG0196|consen  702 SKPVMIITEYMENGSLDSFLRQNDG--QFTVIQLVGMLRGIASGMKYLSD---MNYVHRDLAARNILVNSNLVCKVSDFG  776 (996)
T ss_pred             CceeEEEhhhhhCCcHHHHHhhcCC--ceEeehHHHHHHHHHHHhHHHhh---cCchhhhhhhhheeeccceEEEecccc
Confidence            5568999999999999999998774  48999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccccc-ccccc---CccccCCCCCC
Q 028629          179 LPLLAENAEKV-GHVTP---YSGSINPTNSA  205 (206)
Q Consensus       179 ~a~~~~~~~~~-~~~~~---~~~y~aPE~~~  205 (206)
                      ++++++++... ....|   ...+.|||.++
T Consensus       777 LSRvledd~~~~ytt~GGKIPiRWTAPEAIa  807 (996)
T KOG0196|consen  777 LSRVLEDDPEAAYTTLGGKIPIRWTAPEAIA  807 (996)
T ss_pred             ceeecccCCCccccccCCccceeecChhHhh
Confidence            99988665422 11111   14589999764

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.95  E-value=2.8e-27  Score=183.09  Aligned_cols=171  Identities=23%  Similarity=0.342  Sum_probs=138.7

Q ss_pred             cCCcccceeccCcceeEEEEEEe-----CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-----NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-----~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .+|+..+.||+|+||.||+|...     ++..+++|.+.... ......+.+|+++++.++|+|++++++++..      
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~------   78 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQ------   78 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEec------
Confidence            56888999999999999999852     45789999986433 2334578889999999999999999998765      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCC--------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCcccc
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHA--------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITD  163 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~n  163 (206)
                       ....+++|||+++++|.+++.....              ...+++.....++.|++.||.|||+   .+++|+||+|+|
T Consensus        79 -~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~---~~i~H~dlkp~n  154 (283)
T cd05090          79 -EQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSS---HFFVHKDLAARN  154 (283)
T ss_pred             -CCceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHh---cCeehhccccce
Confidence             5678999999999999998853210              1347888999999999999999999   799999999999


Q ss_pred             EEecCCCceeEccCCccccccccc---cccccccCccccCCCCC
Q 028629          164 ILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       164 il~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      |++++++.++|+|||++.......   ......++..|+|||+.
T Consensus       155 ili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  198 (283)
T cd05090         155 ILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAI  198 (283)
T ss_pred             EEEcCCCcEEeccccccccccCCcceecccCCCccceecChHHh
Confidence            999999999999999997654322   12223445679999975

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.95  E-value=3.4e-27  Score=179.32  Aligned_cols=163  Identities=21%  Similarity=0.410  Sum_probs=134.6

Q ss_pred             ceeccCcceeEEEEEEeCCcEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEEEee
Q 028629           30 AFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEY  108 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e~  108 (206)
                      +.||+|++|.||+|...++..+|+|.+..... .....+.+|++++++++|+|++++++++..       ....+++|||
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~~~lv~e~   73 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQ-------RQPIYIVMEL   73 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEec-------CCccEEEEEC
Confidence            36899999999999977888999998875432 223468889999999999999999998865       4578999999


Q ss_pred             cCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccccccc
Q 028629          109 VPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK  188 (206)
Q Consensus       109 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~~  188 (206)
                      +++++|.+++....  ..+++..++.++.|++.+|.|+|+   .+++|+||+|+||++++++.++|+|||++........
T Consensus        74 ~~~~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~---~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~  148 (250)
T cd05085          74 VPGGDFLSFLRKKK--DELKTKQLVKFALDAAAGMAYLES---KNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIY  148 (250)
T ss_pred             CCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccChheEEEcCCCeEEECCCccceecccccc
Confidence            99999999886543  357899999999999999999999   7999999999999999999999999999976543221


Q ss_pred             --ccccccCccccCCCCC
Q 028629          189 --VGHVTPYSGSINPTNS  204 (206)
Q Consensus       189 --~~~~~~~~~y~aPE~~  204 (206)
                        .....++..|+|||+.
T Consensus       149 ~~~~~~~~~~~y~aPE~~  166 (250)
T cd05085         149 SSSGLKQIPIKWTAPEAL  166 (250)
T ss_pred             ccCCCCCCcccccCHHHh
Confidence              1112334679999964

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.95  E-value=5.3e-28  Score=169.23  Aligned_cols=166  Identities=18%  Similarity=0.312  Sum_probs=141.4

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +|.-.++||+|++|+||+++.+ +++.||+|.+..+.  ...-....+|+.+++.++|.||++++++..+       +..
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhs-------dkk   75 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHS-------DKK   75 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhcc-------Cce
Confidence            5666788999999999999966 79999999987543  3334577889999999999999999998865       778


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      +.+|+|||.. +|..+....+  ..++.+....++.|++.|+.++|+   .++.|||+||.|.+|+.+|.+|++|||+++
T Consensus        76 ltlvfe~cdq-dlkkyfdsln--g~~d~~~~rsfmlqllrgl~fchs---hnvlhrdlkpqnllin~ngelkladfglar  149 (292)
T KOG0662|consen   76 LTLVFEFCDQ-DLKKYFDSLN--GDLDPEIVRSFMLQLLRGLGFCHS---HNVLHRDLKPQNLLINRNGELKLADFGLAR  149 (292)
T ss_pred             eEEeHHHhhH-HHHHHHHhcC--CcCCHHHHHHHHHHHHhhhhhhhh---hhhhhccCCcceEEeccCCcEEecccchhh
Confidence            9999999965 8888887655  468899999999999999999999   799999999999999999999999999999


Q ss_pred             ccccccc-ccccccCccccCCCC
Q 028629          182 LAENAEK-VGHVTPYSGSINPTN  203 (206)
Q Consensus       182 ~~~~~~~-~~~~~~~~~y~aPE~  203 (206)
                      -.+-+-+ .....-|.+|++|..
T Consensus       150 afgipvrcysaevvtlwyrppdv  172 (292)
T KOG0662|consen  150 AFGIPVRCYSAEVVTLWYRPPDV  172 (292)
T ss_pred             hcCCceEeeeceeeeeeccCcce
Confidence            7765432 233567788998864

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.95  E-value=4e-27  Score=182.88  Aligned_cols=169  Identities=18%  Similarity=0.330  Sum_probs=139.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|+..+.||.|++|.||+|... +++.|++|.+..... .....+.+|++++++++|+||+++++++..       ..
T Consensus         4 ~~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-------~~   76 (291)
T cd07844           4 LETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHT-------KK   76 (291)
T ss_pred             ccceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEec-------CC
Confidence            467999999999999999999976 789999999875432 223456789999999999999999998765       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..++++||+.+ +|.+++....  ..+++.....++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++
T Consensus        77 ~~~lv~e~~~~-~L~~~~~~~~--~~~~~~~~~~~~~ql~~al~~lH~---~~i~H~dl~p~nil~~~~~~~kl~dfg~~  150 (291)
T cd07844          77 TLTLVFEYLDT-DLKQYMDDCG--GGLSMHNVRLFLFQLLRGLAYCHQ---RRVLHRDLKPQNLLISERGELKLADFGLA  150 (291)
T ss_pred             eEEEEEecCCC-CHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHh---CCeecccCCHHHEEEcCCCCEEECccccc
Confidence            89999999975 8998887543  357899999999999999999999   79999999999999999999999999998


Q ss_pred             ccccccc-cccccccCccccCCCCC
Q 028629          181 LLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      +...... ......++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~aPE~~  175 (291)
T cd07844         151 RAKSVPSKTYSNEVVTLWYRPPDVL  175 (291)
T ss_pred             cccCCCCccccccccccccCCcHHh
Confidence            7543221 11223457789999964

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.95  E-value=3.5e-27  Score=182.40  Aligned_cols=168  Identities=18%  Similarity=0.328  Sum_probs=135.8

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCc----EEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGT----FIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~----~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .+|+..+.||+|+||.||+|.+. ++.    .+++|.+.... .....++..|+..++++.|+||+++++++..      
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~------   80 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPG------   80 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECC------
Confidence            46888999999999999999974 454    46777765332 2234567778889999999999999997642      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                        ...++++|++++++|.+++....  ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+||
T Consensus        81 --~~~~~i~e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH~---~~iiH~dlkp~nili~~~~~~kl~Df  153 (279)
T cd05111          81 --ASLQLVTQLSPLGSLLDHVRQHR--DSLDPQRLLNWCVQIAKGMYYLEE---HRMVHRNLAARNILLKSDSIVQIADF  153 (279)
T ss_pred             --CccEEEEEeCCCCcHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHH---CCEeccccCcceEEEcCCCcEEEcCC
Confidence              34778999999999999997543  458899999999999999999999   79999999999999999999999999


Q ss_pred             Ccccccccccc---ccccccCccccCCCCC
Q 028629          178 NLPLLAENAEK---VGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~---~~~~~~~~~y~aPE~~  204 (206)
                      |+++.......   .....++..|+|||..
T Consensus       154 g~~~~~~~~~~~~~~~~~~~~~~y~~pE~~  183 (279)
T cd05111         154 GVADLLYPDDKKYFYSEHKTPIKWMALESI  183 (279)
T ss_pred             ccceeccCCCcccccCCCCCcccccCHHHh
Confidence            99986543321   2223456689999975

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.95  E-value=4.2e-27  Score=179.43  Aligned_cols=165  Identities=27%  Similarity=0.480  Sum_probs=139.8

Q ss_pred             ceeccCcceeEEEEEEe-C---CcEEEEEEeecCCCc-cHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEE
Q 028629           30 AFMGEGSKGQMYRGRLK-N---GTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~---~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +.||+|+||.||+|... .   +..+++|.+...... ..+.+.+|++.++.+.|+|++++++++..       ....++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-------~~~~~l   73 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTE-------EEPLYL   73 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecC-------CCceEE
Confidence            46899999999999976 3   788999998755433 36788899999999999999999998865       567999


Q ss_pred             EEeecCCCCHHHHHhcCCC------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629          105 IFEYVPNGTLRSWISEGHA------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ++||+++++|.+++.....      ...+++..++.++.|++.|+.+||+   .+++|+||+|+||++++++.++|+|||
T Consensus        74 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~di~p~nili~~~~~~~l~dfg  150 (262)
T cd00192          74 VLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLAS---KKFVHRDLAARNCLVGEDLVVKISDFG  150 (262)
T ss_pred             EEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHc---CCcccCccCcceEEECCCCcEEEcccc
Confidence            9999999999999987521      1568999999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccc---cccccccCccccCCCCC
Q 028629          179 LPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      .+.......   ......++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  179 (262)
T cd00192         151 LSRDVYDDDYYRKKTGGKLPIRWMAPESL  179 (262)
T ss_pred             cccccccccccccccCCCcCccccCHHHh
Confidence            998776532   23334567789999964

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.95  E-value=2.8e-27  Score=183.28  Aligned_cols=168  Identities=19%  Similarity=0.308  Sum_probs=141.9

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ++|+..+.||+|++|.||+|... +++.|++|.++...  ....+.+.+|++++++++|+||+++.+.+..       .+
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~   73 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRR-------KG   73 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEE-------CC
Confidence            46899999999999999999976 68899999886432  3334678899999999999999999998865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..++++||++++.+..+....   ..+++..++.++.|++.|+.|||+   .+++|+||+|+||++++++.++|+|||++
T Consensus        74 ~~~iv~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~~~ni~~~~~~~~kl~d~g~~  147 (288)
T cd07833          74 RLYLVFEYVERTLLELLEASP---GGLPPDAVRSYIWQLLQAIAYCHS---HNIIHRDIKPENILVSESGVLKLCDFGFA  147 (288)
T ss_pred             EEEEEEecCCCCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCCEEEEeeecc
Confidence            799999999886666555443   348899999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccc--cccccccCccccCCCCC
Q 028629          181 LLAENAE--KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~--~~~~~~~~~~y~aPE~~  204 (206)
                      .......  ......++.+|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~PE~~  173 (288)
T cd07833         148 RALRARPASPLTDYVATRWYRAPELL  173 (288)
T ss_pred             cccCCCccccccCcccccCCcCCchh
Confidence            8766543  23335677889999975

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.95  E-value=2.9e-27  Score=181.29  Aligned_cols=160  Identities=19%  Similarity=0.333  Sum_probs=131.3

Q ss_pred             ceeccCcceeEEEEEEeC-------------CcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           30 AFMGEGSKGQMYRGRLKN-------------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~~-------------~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      +.||+|+||.||+|...+             ...+++|.+..........+.+|+.+++.++||||+++++++..     
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~-----   75 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVR-----   75 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEec-----
Confidence            468999999999998531             22588888875555555678889999999999999999998865     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc-----
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV-----  171 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~-----  171 (206)
                        ....++++||+++++|..++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.     
T Consensus        76 --~~~~~lv~e~~~~~~l~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~Nill~~~~~~~~~~  148 (262)
T cd05077          76 --DVENIMVEEFVEFGPLDLFMHRKS--DVLTTPWKFKVAKQLASALSYLED---KDLVHGNVCTKNILLAREGIDGECG  148 (262)
T ss_pred             --CCCCEEEEecccCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHhhh---CCeECCCCCcccEEEecCCccCCCC
Confidence              456789999999999988876543  358899999999999999999999   79999999999999986654     


Q ss_pred             --eeEccCCccccccccccccccccCccccCCCCC
Q 028629          172 --AKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       172 --~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                        ++++|||++......   ....++..|+|||..
T Consensus       149 ~~~~l~d~g~~~~~~~~---~~~~~~~~y~aPE~~  180 (262)
T cd05077         149 PFIKLSDPGIPITVLSR---QECVERIPWIAPECV  180 (262)
T ss_pred             ceeEeCCCCCCccccCc---ccccccccccChhhh
Confidence              899999998765432   224567789999964

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.95  E-value=1.7e-27  Score=192.53  Aligned_cols=163  Identities=12%  Similarity=0.208  Sum_probs=136.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEe---CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK---NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ..+|...+.||+|+||.||+|...   .+..|++|.+...     ....+|++++++++|+||+++++++..       .
T Consensus        91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-----~~~~~E~~il~~l~h~~iv~~~~~~~~-------~  158 (392)
T PHA03207         91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-----KTPGREIDILKTISHRAIINLIHAYRW-------K  158 (392)
T ss_pred             cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-----ccHHHHHHHHHhcCCCCccceeeeEee-------C
Confidence            457999999999999999999853   3678999988643     234579999999999999999988754       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...+++||++. ++|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.++|+|||+
T Consensus       159 ~~~~lv~e~~~-~~l~~~l~~~---~~l~~~~~~~i~~ql~~aL~~LH~---~givHrDlkp~Nill~~~~~~~l~DfG~  231 (392)
T PHA03207        159 STVCMVMPKYK-CDLFTYVDRS---GPLPLEQAITIQRRLLEALAYLHG---RGIIHRDVKTENIFLDEPENAVLGDFGA  231 (392)
T ss_pred             CEEEEEehhcC-CCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEcCCCCEEEccCcc
Confidence            67899999996 5888888544   468999999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccc---cccccccCccccCCCCC
Q 028629          180 PLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      +.......   ......++..|+|||..
T Consensus       232 a~~~~~~~~~~~~~~~~gt~~y~aPE~~  259 (392)
T PHA03207        232 ACKLDAHPDTPQCYGWSGTLETNSPELL  259 (392)
T ss_pred             ccccCcccccccccccccccCccCHhHh
Confidence            97654332   22235789999999975

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.95  E-value=2.4e-27  Score=184.07  Aligned_cols=174  Identities=17%  Similarity=0.295  Sum_probs=138.8

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeecccccccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECY   93 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   93 (206)
                      ....+|++.+.||+|+||.||+|...      .+..||+|.+.... ......+.+|+.+++.++|+|++++++.+..  
T Consensus         3 ~~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~--   80 (288)
T cd05061           3 VSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSK--   80 (288)
T ss_pred             ccHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC--
Confidence            34678999999999999999999753      24579999886443 2233467889999999999999999998754  


Q ss_pred             ccCCCCceEEEEEeecCCCCHHHHHhcCC-------CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEe
Q 028629           94 FDDSSVSRIFLIFEYVPNGTLRSWISEGH-------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL  166 (206)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~-------~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~  166 (206)
                           ....+++|||+++++|.+++....       .....+...+..++.|++.||.|||+   .+++|+||+|+||++
T Consensus        81 -----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dikp~nili  152 (288)
T cd05061          81 -----GQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNA---KKFVHRDLAARNCMV  152 (288)
T ss_pred             -----CCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCCcCCCCChheEEE
Confidence                 457899999999999999996531       11345677888999999999999999   799999999999999


Q ss_pred             cCCCceeEccCCccccccccc---cccccccCccccCCCCC
Q 028629          167 DQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       167 ~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      ++++.++++|||+++......   ......++..|+|||..
T Consensus       153 ~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~  193 (288)
T cd05061         153 AHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESL  193 (288)
T ss_pred             cCCCcEEECcCCccccccccccccccCCCcccccccCHHHh
Confidence            999999999999998653322   11122345679999974

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.95  E-value=4e-27  Score=182.94  Aligned_cols=185  Identities=18%  Similarity=0.282  Sum_probs=149.8

Q ss_pred             eCHHHHHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhcc-CCCceeeecccccc
Q 028629           14 FSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFE   91 (206)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~   91 (206)
                      +.+.++..+.++|...+.||+|++|.||++... +++.+++|.+... ......+.+|+.+++++ +|+|++++++++..
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~-~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~   90 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPI-SDVDEEIEAEYNILQSLPNHPNVVKFYGMFYK   90 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEeccc-ccHHHHHHHHHHHHHHhcCCCCeEEEEEEEEe
Confidence            445566677899999999999999999999975 7889999998643 23345677899999998 79999999998764


Q ss_pred             ccccCCCCceEEEEEeecCCCCHHHHHhcC-CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC
Q 028629           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISEG-HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL  170 (206)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~  170 (206)
                      ..  .......++++||+++++|.+++... .....+++..++.++.|++.||.+||+   .+++|+||+|+||++++++
T Consensus        91 ~~--~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp~nili~~~~  165 (291)
T cd06639          91 AD--KLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHN---NRIIHRDVKGNNILLTTEG  165 (291)
T ss_pred             cc--ccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEEcCCC
Confidence            21  11235689999999999999987642 111458899999999999999999999   7999999999999999999


Q ss_pred             ceeEccCCccccccccc-cccccccCccccCCCCC
Q 028629          171 VAKISSYNLPLLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       171 ~~kl~df~~a~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      .++|+|||++....... ......++..|+|||..
T Consensus       166 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  200 (291)
T cd06639         166 GVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVI  200 (291)
T ss_pred             CEEEeecccchhcccccccccCccCCccccChhhh
Confidence            99999999998654322 23345678889999963

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.95  E-value=3e-27  Score=182.59  Aligned_cols=169  Identities=17%  Similarity=0.323  Sum_probs=138.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCc----EEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGT----FIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~----~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      .++|+..+.||+|+||.||+|.+. ++.    .||+|.+.... ......+.+|..++..+.|+|++++++.+..     
T Consensus         6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----   80 (279)
T cd05109           6 ETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLT-----   80 (279)
T ss_pred             hhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC-----
Confidence            467899999999999999999964 454    48999886443 3345678889999999999999999988753     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                         ...++++|++++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|
T Consensus        81 ---~~~~l~~~~~~~g~l~~~l~~~~--~~~~~~~~~~~~~qi~~~L~~lH~---~~iiH~dlkp~Nil~~~~~~~kL~d  152 (279)
T cd05109          81 ---STVQLVTQLMPYGCLLDYVRENK--DRIGSQDLLNWCVQIAKGMSYLEE---VRLVHRDLAARNVLVKSPNHVKITD  152 (279)
T ss_pred             ---CCcEEEEEcCCCCCHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccccceEEEcCCCcEEECC
Confidence               34678999999999999987643  358899999999999999999999   7999999999999999999999999


Q ss_pred             CCcccccccccccc---ccccCccccCCCCC
Q 028629          177 YNLPLLAENAEKVG---HVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~~~~~---~~~~~~~y~aPE~~  204 (206)
                      ||+++.........   ...++..|+|||..
T Consensus       153 fG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~  183 (279)
T cd05109         153 FGLARLLDIDETEYHADGGKVPIKWMALESI  183 (279)
T ss_pred             CCceeecccccceeecCCCccchhhCCHHHh
Confidence            99998765332211   12334679999974

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.95  E-value=3.3e-27  Score=181.39  Aligned_cols=164  Identities=20%  Similarity=0.340  Sum_probs=130.0

Q ss_pred             ceeccCcceeEEEEEEeC---CcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEE
Q 028629           30 AFMGEGSKGQMYRGRLKN---GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI  105 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~~---~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (206)
                      +.||+|+||.||+|...+   ...+++|.+.... ......+.+|++.++.++|+||+++++.+..       ....+++
T Consensus         1 ~~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~-------~~~~~lv   73 (269)
T cd05042           1 DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIE-------SIPYLLV   73 (269)
T ss_pred             CcCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECC-------CCceEEE
Confidence            368999999999998542   4467888775433 2234567889999999999999999998865       5678999


Q ss_pred             EeecCCCCHHHHHhcCCC--CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccc
Q 028629          106 FEYVPNGTLRSWISEGHA--WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  183 (206)
Q Consensus       106 ~e~~~~~~L~~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~  183 (206)
                      |||+++++|.+++.....  ....++.....++.|++.|+.|||+   .+++|+||||+||++++++.++|+|||++...
T Consensus        74 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~  150 (269)
T cd05042          74 LEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQ---ADFIHSDLALRNCQLTADLSVKIGDYGLALEQ  150 (269)
T ss_pred             EEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHh---cCEecccccHhheEecCCCcEEEecccccccc
Confidence            999999999999876432  1234677888999999999999999   79999999999999999999999999998654


Q ss_pred             cccc---cccccccCccccCCCC
Q 028629          184 ENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       184 ~~~~---~~~~~~~~~~y~aPE~  203 (206)
                      ....   ......++..|+|||.
T Consensus       151 ~~~~~~~~~~~~~~~~~y~aPE~  173 (269)
T cd05042         151 YPEDYYITKDCHAVPLRWLAPEL  173 (269)
T ss_pred             ccchheeccCCCCCcccccCHHH
Confidence            3211   1222345567999995

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.95  E-value=3.4e-27  Score=180.97  Aligned_cols=171  Identities=14%  Similarity=0.267  Sum_probs=142.8

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .+|...+.||.|++|.||++... ++..+++|.+....   .....++.+|+.+++.+.|+|++++++.+..       .
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-------~   74 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIE-------D   74 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEe-------C
Confidence            46888999999999999999965 79999999886432   2234578889999999999999999998865       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCC-CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGH-AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      +..++++|++++++|.+++.... ....+++..++.++.|++.|+.|||+   .+++|+||+|+||+++.++.++|+|||
T Consensus        75 ~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~p~nili~~~~~~~l~dfg  151 (267)
T cd08229          75 NELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHS---RRVMHRDIKPANVFITATGVVKLGDLG  151 (267)
T ss_pred             CeEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEECcch
Confidence            67999999999999999886421 12458899999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccc-cccccccCccccCCCCC
Q 028629          179 LPLLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ++....... ......++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~ape~~  178 (267)
T cd08229         152 LGRFFSSKTTAAHSLVGTPYYMSPERI  178 (267)
T ss_pred             hhhccccCCcccccccCCcCccCHHHh
Confidence            987664332 22234677889999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.95  E-value=2.1e-27  Score=192.05  Aligned_cols=176  Identities=20%  Similarity=0.352  Sum_probs=141.1

Q ss_pred             HHHHhcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCCC-ccHHHHHHHHHHHhccC-CCceeeeccccc
Q 028629           19 LEEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLR-HCHLVSALGHCF   90 (206)
Q Consensus        19 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~   90 (206)
                      +....++|...+.||+|+||.||+|+++      ++..||+|+++.... ...+.+.+|+.++.++. |+||+++++.+.
T Consensus        32 ~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~  111 (401)
T cd05107          32 WEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACT  111 (401)
T ss_pred             ceecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEc
Confidence            4445567889999999999999999864      246899999975432 23346888999999997 999999999886


Q ss_pred             cccccCCCCceEEEEEeecCCCCHHHHHhcCCC-----------------------------------------------
Q 028629           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA-----------------------------------------------  123 (206)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-----------------------------------------------  123 (206)
                      .       .+..++++||+++|+|.+++.....                                               
T Consensus       112 ~-------~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (401)
T cd05107         112 K-------GGPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKD  184 (401)
T ss_pred             c-------CCCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCc
Confidence            5       4578999999999999998864310                                               


Q ss_pred             ------------------------------------------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCcee
Q 028629          124 ------------------------------------------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVF  155 (206)
Q Consensus       124 ------------------------------------------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~  155 (206)
                                                                      ...+++..++.++.|++.||.|||+   .+++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~iv  261 (401)
T cd05107         185 ESADYVPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLAS---KNCV  261 (401)
T ss_pred             cccCccchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhc---CCcC
Confidence                                                            1236777888999999999999999   7999


Q ss_pred             ccCCccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCCC
Q 028629          156 SNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       156 h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      |+||+|+||++++++.++|+|||+++......   ......++..|+|||..
T Consensus       262 Hrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~  313 (401)
T cd05107         262 HRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESI  313 (401)
T ss_pred             cccCCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHh
Confidence            99999999999999999999999998653321   12223456789999964

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.95  E-value=2.9e-27  Score=183.98  Aligned_cols=172  Identities=19%  Similarity=0.353  Sum_probs=140.7

Q ss_pred             hcCCcccceeccCcceeEEEEEEeC-----------------CcEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceee
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKN-----------------GTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVS   84 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~-----------------~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~   84 (206)
                      ..+|+..+.||+|+||.||++....                 +..|++|.+..... ...+.+.+|++++++++|+|+++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~   83 (296)
T cd05051           4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIAR   83 (296)
T ss_pred             hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeE
Confidence            4679999999999999999988541                 24589998875432 34567888999999999999999


Q ss_pred             eccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCC--------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceec
Q 028629           85 ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA--------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFS  156 (206)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h  156 (206)
                      +++++..       .+..++++|++++++|.+++.....        ...+++..++.++.|++.||.|||+   .+++|
T Consensus        84 ~~~~~~~-------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~---~~i~H  153 (296)
T cd05051          84 LLGVCTV-------DPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLES---LNFVH  153 (296)
T ss_pred             EEEEEec-------CCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHH---cCccc
Confidence            9998865       4678999999999999999876421        1258999999999999999999999   79999


Q ss_pred             cCCccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCCC
Q 028629          157 NNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       157 ~dl~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      +||+|+||++++++.++|+|||++.......   ......++..|+|||+.
T Consensus       154 ~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  204 (296)
T cd05051         154 RDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESV  204 (296)
T ss_pred             cccchhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHh
Confidence            9999999999999999999999997654322   12223456689999964

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.95  E-value=5.2e-27  Score=180.42  Aligned_cols=175  Identities=15%  Similarity=0.290  Sum_probs=136.5

Q ss_pred             CcccceeccCcceeEEEEEEe-CCc--EEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           26 FDTSAFMGEGSKGQMYRGRLK-NGT--FIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~-~~~--~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      +.+++.||+|+||.||+|... ++.  .+|+|.++...  ....+.+.+|+++++.++|+||+++++.+...... ....
T Consensus         1 ~~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~-~~~~   79 (272)
T cd05075           1 LALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVES-EGYP   79 (272)
T ss_pred             CccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcc-cCCC
Confidence            356788999999999999975 333  68999886542  33456788899999999999999999987542211 1223


Q ss_pred             eEEEEEeecCCCCHHHHHhcC---CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629          101 RIFLIFEYVPNGTLRSWISEG---HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      ..++++||+.+++|.+++...   .....+++.....++.|++.||.|||+   .+++|+||||+||++++++.++|+||
T Consensus        80 ~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Df  156 (272)
T cd05075          80 SPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSS---KSFIHRDLAARNCMLNENMNVCVADF  156 (272)
T ss_pred             CcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHH---CCeeccccchhheEEcCCCCEEECCC
Confidence            578999999999999887432   122458899999999999999999999   79999999999999999999999999


Q ss_pred             Ccccccccccc---ccccccCccccCCCCC
Q 028629          178 NLPLLAENAEK---VGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~---~~~~~~~~~y~aPE~~  204 (206)
                      |++........   ......+..|+|||..
T Consensus       157 g~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  186 (272)
T cd05075         157 GLSKKIYNGDYYRQGRIAKMPVKWIAIESL  186 (272)
T ss_pred             CcccccCcccceecCCcccCCcccCCHHHc
Confidence            99987654321   1222445679999875

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.95  E-value=2.1e-27  Score=188.83  Aligned_cols=174  Identities=21%  Similarity=0.365  Sum_probs=138.4

Q ss_pred             HhcCCcccceeccCcceeEEEEEE------eCCcEEEEEEeecCC-CccHHHHHHHHHHHhcc-CCCceeeecccccccc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRL------KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFECY   93 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~------~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~   93 (206)
                      ..++|+..+.||+|+||.||+|..      .+++.||+|.++... ......+.+|+.++.++ +|+||+++++++..  
T Consensus         5 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~--   82 (343)
T cd05103           5 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTK--   82 (343)
T ss_pred             chhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeec--
Confidence            356899999999999999999973      246789999997543 23345688899999999 68999999997754  


Q ss_pred             ccCCCCceEEEEEeecCCCCHHHHHhcCCC--------------------------------------------------
Q 028629           94 FDDSSVSRIFLIFEYVPNGTLRSWISEGHA--------------------------------------------------  123 (206)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~--------------------------------------------------  123 (206)
                          .+...++++||+++++|.+++.....                                                  
T Consensus        83 ----~~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (343)
T cd05103          83 ----PGGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSL  158 (343)
T ss_pred             ----CCCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCcc
Confidence                23468899999999999998864210                                                  


Q ss_pred             --------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccccc--
Q 028629          124 --------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE--  187 (206)
Q Consensus       124 --------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~--  187 (206)
                                    ...+++..+..++.|++.||.|||+   .+++|+||||+||++++++.++|+|||++.......  
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~  235 (343)
T cd05103         159 SDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDY  235 (343)
T ss_pred             ccchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCccCeEEEcCCCcEEEEecccccccccCcch
Confidence                          0236778889999999999999999   799999999999999999999999999997653221  


Q ss_pred             -cccccccCccccCCCCC
Q 028629          188 -KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       188 -~~~~~~~~~~y~aPE~~  204 (206)
                       ......++..|+|||..
T Consensus       236 ~~~~~~~~~~~y~aPE~~  253 (343)
T cd05103         236 VRKGDARLPLKWMAPETI  253 (343)
T ss_pred             hhcCCCCCCcceECcHHh
Confidence             12223345679999964

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.95  E-value=5.9e-27  Score=182.40  Aligned_cols=168  Identities=17%  Similarity=0.313  Sum_probs=144.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      .++|...+.||+|+||.||++... ++..+++|.+........+.+.+|+.++++++|+|++++++.+..       .+.
T Consensus        18 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~-------~~~   90 (293)
T cd06647          18 KKKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLV-------GDE   90 (293)
T ss_pred             hhhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeee-------CCc
Confidence            478999999999999999999865 788999999875555556778899999999999999999998865       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++||+++++|.+++...    .+++..+..++.|++.|+.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        91 ~~lv~e~~~~~~L~~~~~~~----~l~~~~~~~i~~~l~~al~~LH~---~gi~H~dL~p~Nili~~~~~~kL~dfg~~~  163 (293)
T cd06647          91 LWVVMEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCA  163 (293)
T ss_pred             EEEEEecCCCCcHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHh---CCEeeccCCHHHEEEcCCCCEEEccCccee
Confidence            89999999999999988753    47788999999999999999999   799999999999999999999999999887


Q ss_pred             ccccc-ccccccccCccccCCCCC
Q 028629          182 LAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      ..... .......++..|+|||..
T Consensus       164 ~~~~~~~~~~~~~~~~~y~~PE~~  187 (293)
T cd06647         164 QITPEQSKRSTMVGTPYWMAPEVV  187 (293)
T ss_pred             cccccccccccccCChhhcCchhh
Confidence            55432 223334677889999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.95  E-value=1.8e-27  Score=183.69  Aligned_cols=166  Identities=16%  Similarity=0.314  Sum_probs=140.9

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      .|+..+.||+|++|.||+|... ++..||+|.++... ....+.+.+|++++++++|+|++++++.+..       .+..
T Consensus         5 ~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~~   77 (277)
T cd06642           5 LFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLK-------GTKL   77 (277)
T ss_pred             HHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhccccc-------CCce
Confidence            4777888999999999999865 68899999887443 3345678899999999999999999998865       5679


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      ++++||+++++|.+++..    ..+++..+..++.|++.|+.|||+   .+++|+||+|+||++++++.++++|||++..
T Consensus        78 ~lv~e~~~~~~L~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH~---~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~  150 (277)
T cd06642          78 WIIMEYLGGGSALDLLKP----GPLEETYIATILREILKGLDYLHS---ERKIHRDIKAANVLLSEQGDVKLADFGVAGQ  150 (277)
T ss_pred             EEEEEccCCCcHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHhc---CCeeccCCChheEEEeCCCCEEEcccccccc
Confidence            999999999999998865    357899999999999999999999   7999999999999999999999999999976


Q ss_pred             ccccc-cccccccCccccCCCCC
Q 028629          183 AENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       183 ~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ..... ......++..|+|||+.
T Consensus       151 ~~~~~~~~~~~~~~~~y~aPE~~  173 (277)
T cd06642         151 LTDTQIKRNTFVGTPFWMAPEVI  173 (277)
T ss_pred             ccCcchhhhcccCcccccCHHHh
Confidence            65432 22234677889999975

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.95  E-value=3.9e-27  Score=183.19  Aligned_cols=171  Identities=22%  Similarity=0.359  Sum_probs=142.2

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC--ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|+..+.||.|++|.||+|... ++..+++|.++....  .....+.+|+.+++++.|+||+++.+++..     ...
T Consensus         4 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~-----~~~   78 (293)
T cd07843           4 VDEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVG-----SNL   78 (293)
T ss_pred             hhhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEe-----cCC
Confidence            357999999999999999999976 688999999975432  223456789999999999999999998765     123


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...++++||+.+ +|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||+
T Consensus        79 ~~~~lv~e~~~~-~L~~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~---~~i~H~dl~p~nili~~~~~~~l~d~g~  152 (293)
T cd07843          79 DKIYMVMEYVEH-DLKSLMETMK--QPFLQSEVKCLMLQLLSGVAHLHD---NWILHRDLKTSNLLLNNRGILKICDFGL  152 (293)
T ss_pred             CcEEEEehhcCc-CHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHHHEEECCCCcEEEeecCc
Confidence            689999999975 8988887643  358999999999999999999999   7999999999999999999999999999


Q ss_pred             ccccccc-ccccccccCccccCCCCC
Q 028629          180 PLLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      +...... .......++..|+|||..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~aPE~~  178 (293)
T cd07843         153 AREYGSPLKPYTQLVVTLWYRAPELL  178 (293)
T ss_pred             eeeccCCccccccccccccccCchhh
Confidence            9876554 222334567789999964

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.95  E-value=2.8e-27  Score=184.27  Aligned_cols=172  Identities=17%  Similarity=0.347  Sum_probs=138.3

Q ss_pred             hcCCcccceeccCcceeEEEEEEeC---------------CcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeec
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKN---------------GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSAL   86 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~---------------~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~   86 (206)
                      .++|++.+.||+|+||.||+|....               ...||+|.+.... ......+.+|++++++++|+|+++++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~   83 (295)
T cd05097           4 RQQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLL   83 (295)
T ss_pred             hHhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEE
Confidence            4689999999999999999988531               1248899887543 22345688999999999999999999


Q ss_pred             cccccccccCCCCceEEEEEeecCCCCHHHHHhcCCC---------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceecc
Q 028629           87 GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA---------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSN  157 (206)
Q Consensus        87 ~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~  157 (206)
                      +++..       .+..+++|||+++++|.+++.....         ...+++..++.++.|++.||.|||+   .+++|+
T Consensus        84 ~~~~~-------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~---~~i~H~  153 (295)
T cd05097          84 GVCVS-------DDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLAS---LNFVHR  153 (295)
T ss_pred             EEEcC-------CCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHh---cCeecc
Confidence            98865       5678999999999999998864321         1246888999999999999999999   799999


Q ss_pred             CCccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCCC
Q 028629          158 NLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       158 dl~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      ||+|+||++++++.++|+|||++.......   ......++..|+|||..
T Consensus       154 dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  203 (295)
T cd05097         154 DLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESI  203 (295)
T ss_pred             ccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhh
Confidence            999999999999999999999997653322   11222345679999964

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.95  E-value=5.5e-27  Score=181.00  Aligned_cols=162  Identities=19%  Similarity=0.280  Sum_probs=136.7

Q ss_pred             eccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEEEe
Q 028629           32 MGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE  107 (206)
Q Consensus        32 lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e  107 (206)
                      ||+|+||.||+|... +|+.+++|.+....   ......+.+|+++++.++|+|++++.+.+..       .+..++++|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~~~lv~e   73 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFET-------KDDLCLVMT   73 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEec-------CCeEEEEEe
Confidence            689999999999865 78999999986432   2234456789999999999999999887754       567999999


Q ss_pred             ecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccccc
Q 028629          108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE  187 (206)
Q Consensus       108 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~  187 (206)
                      |+++++|.+++..... ..+++..+..++.|++.|+.|||+   .+++|+||+|+||++++++.++|+|||.+.......
T Consensus        74 ~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~ql~~~l~~lH~---~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~  149 (277)
T cd05577          74 LMNGGDLKYHIYNVGE-PGFPEARAIFYAAQIICGLEHLHQ---RRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGK  149 (277)
T ss_pred             cCCCCcHHHHHHHcCc-CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEECCCCCEEEccCcchhhhccCC
Confidence            9999999999876532 368999999999999999999999   799999999999999999999999999998765444


Q ss_pred             cccccccCccccCCCCC
Q 028629          188 KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       188 ~~~~~~~~~~y~aPE~~  204 (206)
                      ......++..|+|||..
T Consensus       150 ~~~~~~~~~~y~~PE~~  166 (277)
T cd05577         150 KIKGRAGTPGYMAPEVL  166 (277)
T ss_pred             ccccccCCCCcCCHHHh
Confidence            44445677889999964

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.95  E-value=7.3e-27  Score=180.68  Aligned_cols=169  Identities=20%  Similarity=0.340  Sum_probs=141.2

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      +|+..+.||.|++|.||+|... ++..|++|.+.... ......+.+|+.++++++|+|++++++.+..       .+..
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-------~~~~   73 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHT-------ENKL   73 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEee-------CCcE
Confidence            5888999999999999999976 78999999987553 2334567789999999999999999998865       5678


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      ++++||+++ +|.+++........+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++++|||++..
T Consensus        74 ~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~  149 (284)
T cd07836          74 MLVFEYMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHE---NRVLHRDLKPQNLLINKRGELKLADFGLARA  149 (284)
T ss_pred             EEEEecCCc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEECCCCcEEEeecchhhh
Confidence            999999986 888887654322468999999999999999999999   7999999999999999999999999999976


Q ss_pred             ccccc-cccccccCccccCCCCC
Q 028629          183 AENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       183 ~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ..... ......++..|++||..
T Consensus       150 ~~~~~~~~~~~~~~~~y~~PE~~  172 (284)
T cd07836         150 FGIPVNTFSNEVVTLWYRAPDVL  172 (284)
T ss_pred             hcCCccccccccccccccChHHh
Confidence            54322 22234567889999953

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.95  E-value=3.4e-27  Score=182.80  Aligned_cols=169  Identities=17%  Similarity=0.295  Sum_probs=144.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|+..+.||+|++|.||++... ++..+++|.+.... ....+.+.+|+++++.++|+|++++++.+..       .+
T Consensus         4 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-------~~   76 (284)
T cd06620           4 NEDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLN-------EN   76 (284)
T ss_pred             HHHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEec-------CC
Confidence            357889999999999999999975 68899999886543 3445678899999999999999999998865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..++++||+++++|.+++...   ..+++.....++.+++.++.|||+.  .+++|+||+|+||++++++.++|+|||++
T Consensus        77 ~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~~i~~~l~~LH~~--~~i~H~dl~p~nil~~~~~~~~l~d~gl~  151 (284)
T cd06620          77 NICMCMEFMDCGSLDRIYKKG---GPIPVEILGKIAVAVVEGLTYLYNV--HRIMHRDIKPSNILVNSRGQIKLCDFGVS  151 (284)
T ss_pred             EEEEEEecCCCCCHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHh--cCeeccCCCHHHEEECCCCcEEEccCCcc
Confidence            899999999999999988764   4588999999999999999999973  48999999999999999999999999998


Q ss_pred             ccccccccccccccCccccCCCCC
Q 028629          181 LLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ....... .....++..|+|||..
T Consensus       152 ~~~~~~~-~~~~~~~~~~~aPE~~  174 (284)
T cd06620         152 GELINSI-ADTFVGTSTYMSPERI  174 (284)
T ss_pred             cchhhhc-cCccccCcccCCHHHH
Confidence            7654322 2335788899999974

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.95  E-value=5e-27  Score=179.62  Aligned_cols=171  Identities=19%  Similarity=0.334  Sum_probs=141.0

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ....+|+..+.||+|+||.||++...++..+++|.+... ....+.+.+|++++++++|+|++++.+.+..        .
T Consensus         3 ~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~--------~   73 (260)
T cd05073           3 IPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLVKLHAVVTK--------E   73 (260)
T ss_pred             ccccceeEEeEecCccceEEEEEEecCCccEEEEecCCC-hhHHHHHHHHHHHHHhcCCCCcceEEEEEcC--------C
Confidence            345789999999999999999998767778999988643 2344678889999999999999999887643        4


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..++++||+++++|.+++..... ...++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||.+
T Consensus        74 ~~~~v~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl~p~ni~i~~~~~~~l~d~~~~  149 (260)
T cd05073          74 PIYIITEFMAKGSLLDFLKSDEG-SKQPLPKLIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIADFGLA  149 (260)
T ss_pred             CeEEEEEeCCCCcHHHHHHhCCc-cccCHHHHHHHHHHHHHHHHHHHh---CCccccccCcceEEEcCCCcEEECCCcce
Confidence            57899999999999999876432 457888999999999999999999   79999999999999999999999999999


Q ss_pred             cccccccc--ccccccCccccCCCCC
Q 028629          181 LLAENAEK--VGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~~--~~~~~~~~~y~aPE~~  204 (206)
                      ........  .....++..|+|||+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~y~~PE~~  175 (260)
T cd05073         150 RVIEDNEYTAREGAKFPIKWTAPEAI  175 (260)
T ss_pred             eeccCCCcccccCCcccccccCHhHh
Confidence            86643221  1122345679999975

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.95  E-value=4.1e-27  Score=183.00  Aligned_cols=172  Identities=21%  Similarity=0.381  Sum_probs=141.3

Q ss_pred             hcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      ..+|...+.||+|++|.||+|...      ++..+++|.+........+.+.+|++.++++.|+||+++++++..     
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----   78 (291)
T cd05094           4 RRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGD-----   78 (291)
T ss_pred             hHHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEcc-----
Confidence            346888899999999999999843      245688888875555555678899999999999999999998865     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCC-------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCcccc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHA-------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITD  163 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~-------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~n  163 (206)
                        ....+++|||+++++|.+++.....             ...+++..++.++.|++.|+.|||+   .+++|+||+|+|
T Consensus        79 --~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~---~~i~H~dlkp~N  153 (291)
T cd05094          79 --GDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLAS---QHFVHRDLATRN  153 (291)
T ss_pred             --CCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccCcce
Confidence              5678999999999999999865321             1347899999999999999999999   799999999999


Q ss_pred             EEecCCCceeEccCCccccccccc---cccccccCccccCCCCC
Q 028629          164 ILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       164 il~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      |++++++.++|+|||++.......   ......++..|+|||+.
T Consensus       154 il~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~  197 (291)
T cd05094         154 CLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESI  197 (291)
T ss_pred             EEEccCCcEEECCCCcccccCCCceeecCCCCCcceeecChHHh
Confidence            999999999999999997654332   22334556789999964

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.95  E-value=3.5e-27  Score=181.81  Aligned_cols=173  Identities=18%  Similarity=0.305  Sum_probs=141.0

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   94 (206)
                      ..++|...+.||+|+||.||+|...      ++..|++|.+.... ......+.+|+.++..+.|+|++++++++..   
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~---   80 (277)
T cd05032           4 PREKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVST---   80 (277)
T ss_pred             chHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcC---
Confidence            3568999999999999999999864      23689999986442 2334568889999999999999999998865   


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCC-------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHA-------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD  167 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~  167 (206)
                          ....++++||+++++|.+++.....       ...+++..++.++.|++.||.|||+   .+++|+||+|+||+++
T Consensus        81 ----~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~di~p~nill~  153 (277)
T cd05032          81 ----GQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAA---KKFVHRDLAARNCMVA  153 (277)
T ss_pred             ----CCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHh---CCccccccChheEEEc
Confidence                4678999999999999999865321       1236788999999999999999999   7999999999999999


Q ss_pred             CCCceeEccCCccccccccc---cccccccCccccCCCCC
Q 028629          168 QNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       168 ~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      +++.++|+|||+++......   ......++..|+|||..
T Consensus       154 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  193 (277)
T cd05032         154 EDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESL  193 (277)
T ss_pred             CCCCEEECCcccchhhccCcccccCCCCCccccccCHHHH
Confidence            99999999999997654332   12233456789999964

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.95  E-value=5.4e-27  Score=180.41  Aligned_cols=167  Identities=19%  Similarity=0.343  Sum_probs=139.5

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC----------ccHHHHHHHHHHHhccCCCceeeecccccccc
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS----------HSTRNFMHHIELISKLRHCHLVSALGHCFECY   93 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~----------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   93 (206)
                      +|...+.||.|++|.||+|... ++..+|+|.+.....          ...+.+.+|+..++.++|+|++++++++..  
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~--   79 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETT--   79 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEecc--
Confidence            5778899999999999999965 788999998864311          012457789999999999999999998754  


Q ss_pred             ccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCcee
Q 028629           94 FDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAK  173 (206)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~k  173 (206)
                           .+..++++||+++++|.+++...   ..+++..+..++.|++.|+.+||+   .+++|+||+|+||++++++.++
T Consensus        80 -----~~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~~~nil~~~~~~~~  148 (272)
T cd06629          80 -----EEYLSIFLEYVPGGSIGSCLRTY---GRFEEQLVRFFTEQVLEGLAYLHS---KGILHRDLKADNLLVDADGICK  148 (272)
T ss_pred             -----CCceEEEEecCCCCcHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHhh---CCeeecCCChhhEEEcCCCeEE
Confidence                 56789999999999999998765   458889999999999999999999   7999999999999999999999


Q ss_pred             EccCCccccccccc---cccccccCccccCCCCC
Q 028629          174 ISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       174 l~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      ++|||++.......   ......++..|+|||..
T Consensus       149 l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~  182 (272)
T cd06629         149 ISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVI  182 (272)
T ss_pred             EeeccccccccccccccccccccCCccccCHHHh
Confidence            99999998654322   12234577889999953

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.95  E-value=4.1e-27  Score=183.01  Aligned_cols=176  Identities=20%  Similarity=0.385  Sum_probs=141.8

Q ss_pred             HHHHhcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCC-CccHHHHHHHHHHHhcc-CCCceeeeccccc
Q 028629           19 LEEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCF   90 (206)
Q Consensus        19 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~   90 (206)
                      +....++|+..+.||+|++|.||++...      +...+++|.+.... ......+.+|++++.++ +|+||+++++++.
T Consensus         7 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~   86 (293)
T cd05053           7 WELPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCT   86 (293)
T ss_pred             cccCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEc
Confidence            3445678999999999999999999864      23578999887442 23345688899999999 7999999999875


Q ss_pred             cccccCCCCceEEEEEeecCCCCHHHHHhcCC-------------CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceecc
Q 028629           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGH-------------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSN  157 (206)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~-------------~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~  157 (206)
                      .       .+..+++|||+++++|.+++....             ....+++..++.++.|++.||.|||+   .+++|+
T Consensus        87 ~-------~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~---~~ivH~  156 (293)
T cd05053          87 Q-------EGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLAS---KKCIHR  156 (293)
T ss_pred             C-------CCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHH---CCcccc
Confidence            5       557899999999999999986421             12468899999999999999999999   799999


Q ss_pred             CCccccEEecCCCceeEccCCcccccccccc---ccccccCccccCCCCC
Q 028629          158 NLKITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  204 (206)
Q Consensus       158 dl~p~nil~~~~~~~kl~df~~a~~~~~~~~---~~~~~~~~~y~aPE~~  204 (206)
                      ||+|+||++++++.++|+|||+++.......   .....++..|+|||..
T Consensus       157 dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  206 (293)
T cd05053         157 DLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEAL  206 (293)
T ss_pred             ccceeeEEEcCCCeEEeCccccccccccccceeccCCCCCCccccCHHHh
Confidence            9999999999999999999999987654321   1112344679999964

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.95  E-value=1e-26  Score=182.67  Aligned_cols=165  Identities=19%  Similarity=0.263  Sum_probs=131.4

Q ss_pred             cceeccCcceeEEEEEEe---CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEE
Q 028629           29 SAFMGEGSKGQMYRGRLK---NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI  105 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (206)
                      +..||+|+||.||+|...   ++..||+|.+....  ....+.+|+.++++++|+||+++++++..     ......+++
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~-----~~~~~~~lv   78 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG--ISMSACREIALLRELKHPNVIALQKVFLS-----HSDRKVWLL   78 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCC--CcHHHHHHHHHHHhCCCCCeeeEEEEEec-----cCCCeEEEE
Confidence            467999999999999964   45789999886432  23457789999999999999999998754     235678999


Q ss_pred             EeecCCCCHHHHHhcC------CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEe----cCCCceeEc
Q 028629          106 FEYVPNGTLRSWISEG------HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL----DQNLVAKIS  175 (206)
Q Consensus       106 ~e~~~~~~L~~~~~~~------~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~----~~~~~~kl~  175 (206)
                      +||+.+ +|.+++...      .....+++..++.++.|++.||.|||+   .+++|+||||+||++    ++++.++|+
T Consensus        79 ~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~~kl~  154 (317)
T cd07867          79 FDYAEH-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPERGRVKIA  154 (317)
T ss_pred             EeeeCC-cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHh---CCEEcCCCCHHHEEEccCCCCCCcEEEe
Confidence            999865 777776421      111358889999999999999999999   799999999999999    456799999


Q ss_pred             cCCccccccccc----cccccccCccccCCCCC
Q 028629          176 SYNLPLLAENAE----KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       176 df~~a~~~~~~~----~~~~~~~~~~y~aPE~~  204 (206)
                      |||+++......    ......++..|+|||..
T Consensus       155 DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~  187 (317)
T cd07867         155 DMGFARLFNSPLKPLADLDPVVVTFWYRAPELL  187 (317)
T ss_pred             eccceeccCCCcccccccCcceecccccCcHHh
Confidence            999998765432    12235678899999964

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.95  E-value=1.1e-26  Score=177.54  Aligned_cols=169  Identities=17%  Similarity=0.357  Sum_probs=146.1

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ++|+..+.||.|++|.||++... +++.|++|.+..... .....+.+|+..+.+++|+|++++++.+..       ...
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~   73 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYK-------EGE   73 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcc-------CCe
Confidence            46889999999999999999976 699999999875543 456788999999999999999999998865       568


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++||+++++|.+++...   ..+++..++.++.|++.++.+||+.  .+++|+||+|+||+++.++.++|+|||.+.
T Consensus        74 ~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~~l~~~l~~lh~~--~~~~H~~l~~~ni~~~~~~~~~l~df~~~~  148 (264)
T cd06623          74 ISIVLEYMDGGSLADLLKKV---GKIPEPVLAYIARQILKGLDYLHTK--RHIIHRDIKPSNLLINSKGEVKIADFGISK  148 (264)
T ss_pred             EEEEEEecCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHhcc--CCCccCCCCHHHEEECCCCCEEEccCccce
Confidence            99999999999999999765   4589999999999999999999983  399999999999999999999999999998


Q ss_pred             cccccccc-cccccCccccCCCCC
Q 028629          182 LAENAEKV-GHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~~~-~~~~~~~~y~aPE~~  204 (206)
                      ........ ....++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~~~y~~pE~~  172 (264)
T cd06623         149 VLENTLDQCNTFVGTVTYMSPERI  172 (264)
T ss_pred             ecccCCCcccceeecccccCHhhh
Confidence            77554322 245677889999964

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.95  E-value=7.6e-27  Score=180.35  Aligned_cols=169  Identities=20%  Similarity=0.391  Sum_probs=139.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCc----EEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGT----FIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~----~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      ..+|+..+.||+|+||.||+|... ++.    .+++|....... .....+.+|+..+++++|+|++++++++..     
T Consensus         6 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----   80 (279)
T cd05057           6 ETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-----   80 (279)
T ss_pred             HHHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-----
Confidence            356889999999999999999965 343    588998865543 344678889999999999999999998753     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                         ...++++||+++++|.+++....  ..+++..++.++.|++.|+.|||+   .+++|+||+|+||++++++.++|+|
T Consensus        81 ---~~~~~v~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~LH~---~~i~H~di~p~nil~~~~~~~kL~d  152 (279)
T cd05057          81 ---SQVQLITQLMPLGCLLDYVRNHK--DNIGSQYLLNWCVQIAKGMSYLEE---KRLVHRDLAARNVLVKTPQHVKITD  152 (279)
T ss_pred             ---CceEEEEecCCCCcHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHh---CCEEecccCcceEEEcCCCeEEECC
Confidence               46899999999999999987643  358899999999999999999999   7999999999999999999999999


Q ss_pred             CCcccccccccccccc---ccCccccCCCCC
Q 028629          177 YNLPLLAENAEKVGHV---TPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~~~~~~~---~~~~~y~aPE~~  204 (206)
                      ||.++...........   ..+..|+|||..
T Consensus       153 fg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~  183 (279)
T cd05057         153 FGLAKLLDVDEKEYHAEGGKVPIKWMALESI  183 (279)
T ss_pred             CcccccccCcccceecCCCcccccccCHHHh
Confidence            9999876543322111   123569999964

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.95  E-value=7.4e-27  Score=179.50  Aligned_cols=165  Identities=22%  Similarity=0.366  Sum_probs=132.1

Q ss_pred             ceeccCcceeEEEEEEe---CCcEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEE
Q 028629           30 AFMGEGSKGQMYRGRLK---NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI  105 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~---~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (206)
                      +.||+|+||.||+|...   ++..+++|.+..... .....+.+|+.+++.++|+|++++++.+.+       ....+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~~~~lv   73 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTE-------VTPYLLV   73 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcC-------CCCcEEE
Confidence            36899999999999854   356789998865432 333578889999999999999999998754       4568999


Q ss_pred             EeecCCCCHHHHHhcCCC--CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccc
Q 028629          106 FEYVPNGTLRSWISEGHA--WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  183 (206)
Q Consensus       106 ~e~~~~~~L~~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~  183 (206)
                      |||+++++|.+++.....  ....++..+..++.|++.|+.|||+   .+++|+||||+||++++++.++++|||++...
T Consensus        74 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~  150 (269)
T cd05087          74 MEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHK---NNFIHSDLALRNCLLTADLTVKIGDYGLSHNK  150 (269)
T ss_pred             EECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHH---CCEeccccCcceEEEcCCCcEEECCccccccc
Confidence            999999999999865321  1245677888899999999999999   79999999999999999999999999999754


Q ss_pred             cccc---cccccccCccccCCCCC
Q 028629          184 ENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       184 ~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      ....   ......++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~y~aPE~~  174 (269)
T cd05087         151 YKEDYYVTPDQLWVPLRWIAPELV  174 (269)
T ss_pred             cCcceeecCCCcCCcccccCHhHh
Confidence            3322   12224556789999964

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=7.3e-27  Score=180.14  Aligned_cols=166  Identities=19%  Similarity=0.401  Sum_probs=141.6

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccC---CCceeeeccccccccccCCCC
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLR---HCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~---h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .|+..+.||.|++|.||+|... ++..+++|.+.... ......+.+|+.+++++.   |+|++++++.+..       .
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~-------~   74 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLK-------G   74 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeee-------C
Confidence            5788899999999999999975 78999999986542 344567888999999996   9999999998765       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...+++|||+++++|.+++...    .+++...+.++.|++.++.|||+   .+++|+||+|+||++++++.++|+|||+
T Consensus        75 ~~~~lv~e~~~~~~L~~~~~~~----~l~~~~~~~i~~~i~~~l~~lh~---~~i~H~dl~p~ni~i~~~~~~~l~dfg~  147 (277)
T cd06917          75 PRLWIIMEYAEGGSVRTLMKAG----PIAEKYISVIIREVLVALKYIHK---VGVIHRDIKAANILVTNTGNVKLCDFGV  147 (277)
T ss_pred             CEEEEEEecCCCCcHHHHHHcc----CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcCHHHEEEcCCCCEEEccCCc
Confidence            6799999999999999988653    58899999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccc-cccccccCccccCCCCC
Q 028629          180 PLLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      +....... ......++..|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~y~aPE~~  173 (277)
T cd06917         148 AALLNQNSSKRSTFVGTPYWMAPEVI  173 (277)
T ss_pred             eeecCCCccccccccCCcceeCHHHh
Confidence            98665432 23334678889999964

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>PTZ00284 protein kinase; Provisional

Probab=99.95  E-value=3.6e-27  Score=194.57  Aligned_cols=169  Identities=14%  Similarity=0.234  Sum_probs=132.4

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCC------ceeeecccccccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHC------HLVSALGHCFECY   93 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~------~i~~~~~~~~~~~   93 (206)
                      ...++|+..+.||+|+||.||+|... ++..||+|+++.. .........|+++++.+.|.      +++++..++..  
T Consensus       126 ~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~--  202 (467)
T PTZ00284        126 VSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNV-PKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQN--  202 (467)
T ss_pred             cCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecc-hhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEc--
Confidence            44678999999999999999999975 6889999999643 22334556677777777554      46777666543  


Q ss_pred             ccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC---
Q 028629           94 FDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL---  170 (206)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~---  170 (206)
                          .....|++++++ +++|.+++...   ..+++..+..++.|++.||.|||+.  .+|+||||||+|||++.++   
T Consensus       203 ----~~~~~~iv~~~~-g~~l~~~l~~~---~~l~~~~~~~i~~qi~~aL~yLH~~--~gIiHrDlKP~NILl~~~~~~~  272 (467)
T PTZ00284        203 ----ETGHMCIVMPKY-GPCLLDWIMKH---GPFSHRHLAQIIFQTGVALDYFHTE--LHLMHTDLKPENILMETSDTVV  272 (467)
T ss_pred             ----CCceEEEEEecc-CCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhc--CCeecCCCCHHHEEEecCCccc
Confidence                235689999988 66888888765   4588999999999999999999962  4999999999999998654   


Q ss_pred             -------------ceeEccCCccccccccccccccccCccccCCCCC
Q 028629          171 -------------VAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       171 -------------~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                                   .+||+|||.+.....  ......+|.+|+|||..
T Consensus       273 ~~~~~~~~~~~~~~vkl~DfG~~~~~~~--~~~~~~gt~~Y~APE~~  317 (467)
T PTZ00284        273 DPVTNRALPPDPCRVRICDLGGCCDERH--SRTAIVSTRHYRSPEVV  317 (467)
T ss_pred             ccccccccCCCCceEEECCCCccccCcc--ccccccCCccccCcHHh
Confidence                         499999998864332  23346889999999964

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.95  E-value=7.7e-27  Score=177.98  Aligned_cols=169  Identities=14%  Similarity=0.264  Sum_probs=142.7

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +|+..+.||+|+||.+|.+... ++..|++|.+....  ....+.+.+|+.++++++|+|++++.+.+..       .+.
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~   73 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEE-------NGN   73 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecC-------CCe
Confidence            5888999999999999999965 78899999987542  3344578899999999999999999998754       568


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++||+++++|.+.+..... ..+++..++.++.|++.|+.+||+   .+++|+||+|+||+++.++.++|+|||++.
T Consensus        74 ~~lv~e~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~~l~~~nil~~~~~~~~l~d~~~~~  149 (256)
T cd08218          74 LYIVMDYCEGGDLYKKINAQRG-VLFPEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTIKLGDFGIAR  149 (256)
T ss_pred             EEEEEecCCCCcHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCEEEeecccee
Confidence            9999999999999998875432 357889999999999999999999   799999999999999999999999999998


Q ss_pred             cccccc-cccccccCccccCCCCC
Q 028629          182 LAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ...... ......++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~pe~~  173 (256)
T cd08218         150 VLNSTVELARTCIGTPYYLSPEIC  173 (256)
T ss_pred             ecCcchhhhhhccCCccccCHHHh
Confidence            765432 22334677889999963

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.95  E-value=8.9e-27  Score=180.90  Aligned_cols=167  Identities=19%  Similarity=0.301  Sum_probs=139.3

Q ss_pred             CCcccceeccCcceeEEEEEEe----CCcEEEEEEeecCC----CccHHHHHHHHHHHhcc-CCCceeeecccccccccc
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK----SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFD   95 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~----~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~   95 (206)
                      +|+..+.||+|+||.||.+...    +|..||+|++....    ....+.+.+|+.+++++ +|+||+++++.+..    
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~----   76 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT----   76 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeec----
Confidence            4788899999999999999852    68899999987432    22345678899999999 58999999887754    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                         ....++++||+++++|.+++...   ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+
T Consensus        77 ---~~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~al~~lH~---~~i~H~dl~p~nil~~~~~~~kl~  147 (290)
T cd05613          77 ---DTKLHLILDYINGGELFTHLSQR---ERFKEQEVQIYSGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVLT  147 (290)
T ss_pred             ---CCeEEEEEecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeEECCCCCEEEe
Confidence               56789999999999999998765   457889999999999999999999   799999999999999999999999


Q ss_pred             cCCccccccccc--cccccccCccccCCCCC
Q 028629          176 SYNLPLLAENAE--KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       176 df~~a~~~~~~~--~~~~~~~~~~y~aPE~~  204 (206)
                      |||++.......  ......++..|+|||..
T Consensus       148 dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~  178 (290)
T cd05613         148 DFGLSKEFHEDEVERAYSFCGTIEYMAPDIV  178 (290)
T ss_pred             eCccceecccccccccccccCCcccCChhhc
Confidence            999998654322  22234578889999975

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.95  E-value=9.2e-27  Score=180.18  Aligned_cols=168  Identities=20%  Similarity=0.358  Sum_probs=140.1

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +|+..+.||.|++|.||+|... ++..|++|.+....  ......+.+|++++++++|+|++++.+++.+       .+.
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-------~~~   73 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT-------ENK   73 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhccc-------CCc
Confidence            5888999999999999999976 78999999886543  2233578889999999999999999998764       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .+++|||+. ++|.+++..... ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        74 ~~~v~e~~~-~~l~~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~lh~---~~i~H~~l~p~nill~~~~~~~l~dfg~~~  148 (284)
T cd07860          74 LYLVFEFLH-QDLKKFMDASPL-SGIPLPLIKSYLFQLLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLAR  148 (284)
T ss_pred             EEEEeeccc-cCHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEEeeccchh
Confidence            999999996 588888865433 468899999999999999999999   799999999999999999999999999997


Q ss_pred             cccccc-cccccccCccccCCCCC
Q 028629          182 LAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ...... ......++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~~~y~aPE~~  172 (284)
T cd07860         149 AFGVPVRTYTHEVVTLWYRAPEIL  172 (284)
T ss_pred             hcccCccccccccccccccCCeEE
Confidence            654332 22223567789999953

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.95  E-value=7.6e-27  Score=180.23  Aligned_cols=167  Identities=16%  Similarity=0.319  Sum_probs=142.5

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ..|+..+.||.|++|.||+|... ++..||+|.+.... ......+.+|+.+++++.|+|++++.+.+.+       .+.
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~   76 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK-------GTK   76 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-------CCE
Confidence            45888899999999999999975 68899999987543 3345678889999999999999999998865       568


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .+++|||+++++|.+++...    .+++..+..++.|++.|+.++|+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        77 ~~lv~e~~~~~~L~~~i~~~----~l~~~~~~~~~~~l~~~l~~lh~---~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~  149 (277)
T cd06640          77 LWIIMEYLGGGSALDLLRAG----PFDEFQIATMLKEILKGLDYLHS---EKKIHRDIKAANVLLSEQGDVKLADFGVAG  149 (277)
T ss_pred             EEEEEecCCCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHh---CCccCcCCChhhEEEcCCCCEEEcccccce
Confidence            99999999999999988653    47888999999999999999999   799999999999999999999999999997


Q ss_pred             cccccc-cccccccCccccCCCCC
Q 028629          182 LAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ...... ......++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~~y~apE~~  173 (277)
T cd06640         150 QLTDTQIKRNTFVGTPFWMAPEVI  173 (277)
T ss_pred             eccCCccccccccCcccccCHhHh
Confidence            665432 22334677789999974

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.2e-26  Score=176.38  Aligned_cols=167  Identities=24%  Similarity=0.450  Sum_probs=144.5

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC--ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +|+..+.||+|.+|.||++... ++..+++|.+.....  .....+.+|++.++++.|+|++++.+++..       ...
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~   73 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIET-------SDS   73 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEe-------CCE
Confidence            5788999999999999999976 688999999975543  455678999999999999999999998765       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++|++++++|.+++...   ..+++..++.++.|++.++.+||+   .+++|+||+|+||++++++.++|+|||.+.
T Consensus        74 ~~~v~e~~~~~~L~~~~~~~---~~l~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~  147 (254)
T cd06627          74 LYIILEYAENGSLRQIIKKF---GPFPESLVAVYVYQVLQGLAYLHE---QGVIHRDIKAANILTTKDGVVKLADFGVAT  147 (254)
T ss_pred             EEEEEecCCCCcHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCHHHEEECCCCCEEEeccccce
Confidence            99999999999999998765   458999999999999999999999   799999999999999999999999999998


Q ss_pred             ccccccc-ccccccCccccCCCCC
Q 028629          182 LAENAEK-VGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~~-~~~~~~~~~y~aPE~~  204 (206)
                      ....... .....++..|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~~~y~~pe~~  171 (254)
T cd06627         148 KLNDVSKDDASVVGTPYWMAPEVI  171 (254)
T ss_pred             ecCCCcccccccccchhhcCHhhh
Confidence            7655432 2335677889999974

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.95  E-value=9.9e-27  Score=185.61  Aligned_cols=174  Identities=16%  Similarity=0.202  Sum_probs=142.3

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ...++|+..+.||+|++|.||+|... ++..||+|.+....  ......+.+|+.+++.++|+|++++++++..... ..
T Consensus        13 ~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~-~~   91 (353)
T cd07850          13 TVLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKS-LE   91 (353)
T ss_pred             hhhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCC-cc
Confidence            45688999999999999999999975 79999999986432  2334567789999999999999999987753211 01


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      .....++++||+.+ +|.+.+...     ++...+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+||
T Consensus        92 ~~~~~~lv~e~~~~-~l~~~~~~~-----l~~~~~~~~~~ql~~aL~~LH~---~gi~H~dlkp~Nil~~~~~~~kL~Df  162 (353)
T cd07850          92 EFQDVYLVMELMDA-NLCQVIQMD-----LDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDF  162 (353)
T ss_pred             ccCcEEEEEeccCC-CHHHHHhhc-----CCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCEEEccC
Confidence            22457999999965 888877542     7888999999999999999999   79999999999999999999999999


Q ss_pred             CccccccccccccccccCccccCCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |++.............++..|+|||..
T Consensus       163 g~~~~~~~~~~~~~~~~~~~y~aPE~~  189 (353)
T cd07850         163 GLARTAGTSFMMTPYVVTRYYRAPEVI  189 (353)
T ss_pred             ccceeCCCCCCCCCCcccccccCHHHH
Confidence            999877654443445678889999964

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.95  E-value=6.2e-27  Score=180.36  Aligned_cols=171  Identities=20%  Similarity=0.358  Sum_probs=140.8

Q ss_pred             cCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCCCc-cHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      .+|+..+.||.|+||.||+|...      +...+++|.+...... ..+.+.+|++++++++|+|++++++++..     
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----   79 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCRE-----   79 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECC-----
Confidence            57899999999999999999964      2457899988754433 45678999999999999999999998754     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCC------cccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAW------QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL  170 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~  170 (206)
                        ....+++|||+++++|.+++......      ..+++..+..++.|++.+|.|||+   .+++|+||+|+||++++++
T Consensus        80 --~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~---~~i~H~dlkp~Nili~~~~  154 (275)
T cd05046          80 --AEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSN---ARFVHRDLAARNCLVSSQR  154 (275)
T ss_pred             --CCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhh---cCcccCcCccceEEEeCCC
Confidence              45789999999999999998765311      258999999999999999999999   7999999999999999999


Q ss_pred             ceeEccCCcccccccc--ccccccccCccccCCCCC
Q 028629          171 VAKISSYNLPLLAENA--EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       171 ~~kl~df~~a~~~~~~--~~~~~~~~~~~y~aPE~~  204 (206)
                      .++++|||++......  .......++..|+|||..
T Consensus       155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~  190 (275)
T cd05046         155 EVKVSLLSLSKDVYNSEYYKLRNALIPLRWLAPEAV  190 (275)
T ss_pred             cEEEcccccccccCcccccccCCceeEEeecChhhh
Confidence            9999999998754322  122234556679999964

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=5.9e-27  Score=180.04  Aligned_cols=179  Identities=17%  Similarity=0.309  Sum_probs=146.4

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .+.++|+..+.||.|++|.||+|... ++..+++|.+.... ...+.+.+|+.+++++ .|+|++++++.+...... ..
T Consensus         3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~-~~   80 (275)
T cd06608           3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIE-DEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPP-GN   80 (275)
T ss_pred             CchhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCc-hhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCC-Cc
Confidence            35689999999999999999999976 68899999887543 2346788999999999 699999999988652211 12


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCC-CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGH-AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      ....++++||+++++|.+++.... ....+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+||
T Consensus        81 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~---~~i~H~~l~p~ni~~~~~~~~~l~d~  157 (275)
T cd06608          81 DDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHE---NKVIHRDIKGQNILLTKNAEVKLVDF  157 (275)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHHHEEEccCCeEEECCC
Confidence            456899999999999999886532 11468899999999999999999999   79999999999999999999999999


Q ss_pred             Ccccccccc-ccccccccCccccCCCCC
Q 028629          178 NLPLLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      |.+...... .......++..|+|||..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~  185 (275)
T cd06608         158 GVSAQLDSTLGRRNTFIGTPYWMAPEVI  185 (275)
T ss_pred             ccceecccchhhhcCccccccccCHhHh
Confidence            999765432 233345678889999964

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.95  E-value=1.1e-26  Score=177.18  Aligned_cols=169  Identities=20%  Similarity=0.361  Sum_probs=139.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      ..+|+..+.||.|++|.||++...++..+++|.+... ......+.+|+++++++.|+|++++++.+..       ....
T Consensus         3 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~~   74 (256)
T cd05112           3 PSELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREG-AMSEEDFIEEAQVMMKLSHPKLVQLYGVCTE-------RSPI   74 (256)
T ss_pred             hhHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCC-CCCHHHHHHHHHHHHhCCCCCeeeEEEEEcc-------CCce
Confidence            3468888999999999999998776788999988633 3345678899999999999999999988754       4578


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      ++++||+++++|.+++....  ..++++.++.++.|++.++.+||+   .+++|+||+|+||+++.++.++|+|||++..
T Consensus        75 ~~v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lH~---~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~  149 (256)
T cd05112          75 CLVFEFMEHGCLSDYLRAQR--GKFSQETLLGMCLDVCEGMAYLES---SNVIHRDLAARNCLVGENQVVKVSDFGMTRF  149 (256)
T ss_pred             EEEEEcCCCCcHHHHHHhCc--cCCCHHHHHHHHHHHHHHHHHHHH---CCccccccccceEEEcCCCeEEECCCcceee
Confidence            99999999999999887543  347899999999999999999999   7999999999999999999999999999976


Q ss_pred             cccccc--ccccccCccccCCCCC
Q 028629          183 AENAEK--VGHVTPYSGSINPTNS  204 (206)
Q Consensus       183 ~~~~~~--~~~~~~~~~y~aPE~~  204 (206)
                      ..+...  ......+.+|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~aPe~~  173 (256)
T cd05112         150 VLDDQYTSSTGTKFPVKWSSPEVF  173 (256)
T ss_pred             cccCcccccCCCccchhhcCHhHh
Confidence            543221  1112334679999975

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.95  E-value=4.8e-27  Score=181.68  Aligned_cols=172  Identities=22%  Similarity=0.375  Sum_probs=140.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      ..++...+.||+|+||.||++...      ++..+++|.+..........+.+|+++++.++|+||+++++++..     
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----   78 (280)
T cd05092           4 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTE-----   78 (280)
T ss_pred             hHhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEec-----
Confidence            356888999999999999999742      356789998875555556788999999999999999999988755     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCC------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccE
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHA------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDI  164 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~ni  164 (206)
                        ....++++||+++++|.+++.....            ...+++..++.++.|++.|+.|||+   .+++|+||+|+||
T Consensus        79 --~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~---~~i~H~dlkp~ni  153 (280)
T cd05092          79 --GRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLAS---LHFVHRDLATRNC  153 (280)
T ss_pred             --CCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHH---CCeecccccHhhE
Confidence              4568999999999999999865321            1247889999999999999999999   7999999999999


Q ss_pred             EecCCCceeEccCCcccccccccc---ccccccCccccCCCCC
Q 028629          165 LLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  204 (206)
Q Consensus       165 l~~~~~~~kl~df~~a~~~~~~~~---~~~~~~~~~y~aPE~~  204 (206)
                      ++++++.++|+|||++........   .....++..|+|||..
T Consensus       154 l~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  196 (280)
T cd05092         154 LVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESI  196 (280)
T ss_pred             EEcCCCCEEECCCCceeEcCCCceeecCCCccccccccCHHHh
Confidence            999999999999999976543221   1222345679999964

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.95  E-value=5.8e-27  Score=180.78  Aligned_cols=159  Identities=21%  Similarity=0.350  Sum_probs=128.8

Q ss_pred             eeccCcceeEEEEEEe-C------------------------CcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeee
Q 028629           31 FMGEGSKGQMYRGRLK-N------------------------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSA   85 (206)
Q Consensus        31 ~lg~g~~g~v~~~~~~-~------------------------~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~   85 (206)
                      .||+|+||.||+|.+. +                        ...|++|.+..........+.+|+.+++.++|+||+++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            5899999999999853 1                        13478888865544445678889999999999999999


Q ss_pred             ccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEE
Q 028629           86 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL  165 (206)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil  165 (206)
                      ++++..       ....++||||+++++|..++....  ..+++..+..++.|++.||.|||+   .+++|+||+|+||+
T Consensus        82 ~~~~~~-------~~~~~lv~ey~~~g~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH~---~~iiH~dlkp~Nil  149 (274)
T cd05076          82 HGVCVR-------GSENIMVEEFVEHGPLDVCLRKEK--GRVPVAWKITVAQQLASALSYLED---KNLVHGNVCAKNIL  149 (274)
T ss_pred             EEEEEe-------CCceEEEEecCCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHc---CCccCCCCCcccEE
Confidence            999875       567899999999999999886533  357889999999999999999999   79999999999999


Q ss_pred             ecCCC-------ceeEccCCccccccccccccccccCccccCCCCC
Q 028629          166 LDQNL-------VAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       166 ~~~~~-------~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +++.+       .++++|||++.......   ...++..|+|||..
T Consensus       150 l~~~~~~~~~~~~~kl~d~g~~~~~~~~~---~~~~~~~~~aPe~~  192 (274)
T cd05076         150 LARLGLAEGTSPFIKLSDPGVSFTALSRE---ERVERIPWIAPECV  192 (274)
T ss_pred             EeccCcccCccceeeecCCcccccccccc---ccccCCcccCchhh
Confidence            98543       47999999986543321   23566779999964

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.95  E-value=6.5e-27  Score=184.79  Aligned_cols=166  Identities=13%  Similarity=0.205  Sum_probs=134.3

Q ss_pred             ccceeccC--cceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           28 TSAFMGEG--SKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        28 ~~~~lg~g--~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      ..++||+|  +++.||++..+ +|+.||+|.++...  ....+.+.+|+.+++.++||||+++++++..       ++..
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~-------~~~~   74 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIA-------DNEL   74 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEE-------CCEE
Confidence            45788999  67899999976 79999999997543  2334567789999999999999999998876       5679


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      ++++||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++++||+.+..
T Consensus        75 ~lv~e~~~~~~l~~~~~~~~~-~~l~~~~~~~i~~qi~~~L~~LH~---~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~  150 (327)
T cd08227          75 WVVTSFMAYGSAKDLICTHFM-DGMSELAIAYILQGVLKALDYIHH---MGYVHRSVKASHILISVDGKVYLSGLRSNLS  150 (327)
T ss_pred             EEEEeccCCCcHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCChhhEEEecCCcEEEcccchhhc
Confidence            999999999999999865322 358899999999999999999999   7999999999999999999999999986543


Q ss_pred             ccccc--------cccccccCccccCCCCC
Q 028629          183 AENAE--------KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       183 ~~~~~--------~~~~~~~~~~y~aPE~~  204 (206)
                      .....        ......++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  180 (327)
T cd08227         151 MINHGQRLRVVHDFPKYSVKVLPWLSPEVL  180 (327)
T ss_pred             cccccccccccccccccccceecccChHHh
Confidence            32111        11123455679999964

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.95  E-value=9.4e-27  Score=178.14  Aligned_cols=160  Identities=18%  Similarity=0.297  Sum_probs=138.3

Q ss_pred             eccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEEEe
Q 028629           32 MGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE  107 (206)
Q Consensus        32 lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e  107 (206)
                      ||.|++|.||++... ++..+++|.+....   ....+.+.+|+.+++.++|+|++++.+.+..       +...++++|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~~~lv~e   73 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKD-------KKYIYMLME   73 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEc-------CCccEEEEe
Confidence            689999999999976 68999999987543   2344678899999999999999999998765       567999999


Q ss_pred             ecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccccc
Q 028629          108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE  187 (206)
Q Consensus       108 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~  187 (206)
                      |+++++|.+++...   ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++.......
T Consensus        74 ~~~~~~L~~~l~~~---~~l~~~~~~~~~~~i~~~l~~lH~---~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~  147 (262)
T cd05572          74 YCLGGELWTILRDR---GLFDEYTARFYIACVVLAFEYLHN---RGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQ  147 (262)
T ss_pred             cCCCCcHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCHHHEEEcCCCCEEEeeCCcccccCccc
Confidence            99999999999765   358899999999999999999999   799999999999999999999999999998776544


Q ss_pred             cccccccCccccCCCCC
Q 028629          188 KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       188 ~~~~~~~~~~y~aPE~~  204 (206)
                      ......++..|++||..
T Consensus       148 ~~~~~~~~~~~~~PE~~  164 (262)
T cd05572         148 KTWTFCGTPEYVAPEII  164 (262)
T ss_pred             ccccccCCcCccChhHh
Confidence            34445678889999974

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.95  E-value=1.2e-26  Score=179.02  Aligned_cols=166  Identities=16%  Similarity=0.320  Sum_probs=140.8

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      -|+..+.||.|+||.||+|... ++..+|+|.+.... ....+.+.+|+.++++++|+|++++++.+..       .+..
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-------~~~~   77 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK-------DTKL   77 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEe-------CCeE
Confidence            3778889999999999999865 78899999886443 3344678889999999999999999998865       5679


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      ++++||+++++|.+++..    ..+++..+..++.|++.++.+||+   .+++|+||+|+||+++.++.++|+|||++..
T Consensus        78 ~lv~e~~~~~~l~~~i~~----~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~  150 (277)
T cd06641          78 WIIMEYLGGGSALDLLEP----GPLDETQIATILREILKGLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVAGQ  150 (277)
T ss_pred             EEEEEeCCCCcHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHcc---CCeecCCCCHHhEEECCCCCEEEeeccccee
Confidence            999999999999998865    347899999999999999999999   7999999999999999999999999999876


Q ss_pred             ccccc-cccccccCccccCCCCC
Q 028629          183 AENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       183 ~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ..... ......++.+|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~y~~PE~~  173 (277)
T cd06641         151 LTDTQIKRNTFVGTPFWMAPEVI  173 (277)
T ss_pred             cccchhhhccccCCccccChhhh
Confidence            54422 22334677889999974

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.95  E-value=4.2e-27  Score=186.16  Aligned_cols=163  Identities=16%  Similarity=0.152  Sum_probs=126.4

Q ss_pred             HHHhcCCcccceeccCcceeEEEEEEe--CCcEEEEEEeecCC-----CccHHHHHHHHHHHhccCCCceee-ecccccc
Q 028629           20 EEATNNFDTSAFMGEGSKGQMYRGRLK--NGTFIAIRCLKMKK-----SHSTRNFMHHIELISKLRHCHLVS-ALGHCFE   91 (206)
Q Consensus        20 ~~~~~~~~~~~~lg~g~~g~v~~~~~~--~~~~vaiK~~~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~-~~~~~~~   91 (206)
                      .....+|...+.||+|+||.||+|...  ++..+|+|.+....     ......+.+|+++|+++.|+|+++ ++.    
T Consensus        14 ~~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~----   89 (365)
T PRK09188         14 PALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA----   89 (365)
T ss_pred             ccccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE----
Confidence            345678999999999999999999865  57778999875331     123456889999999999999885 432    


Q ss_pred             ccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCC-ccccEEecCCC
Q 028629           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNL-KITDILLDQNL  170 (206)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl-~p~nil~~~~~  170 (206)
                             .+..+++|||+++++|... ..      ..   ...++.|++.+|.|||+   .+|+|||| ||+|||++.++
T Consensus        90 -------~~~~~LVmE~~~G~~L~~~-~~------~~---~~~~~~~i~~aL~~lH~---~gIiHrDL~KP~NILv~~~~  149 (365)
T PRK09188         90 -------TGKDGLVRGWTEGVPLHLA-RP------HG---DPAWFRSAHRALRDLHR---AGITHNDLAKPQNWLMGPDG  149 (365)
T ss_pred             -------cCCcEEEEEccCCCCHHHh-Cc------cc---hHHHHHHHHHHHHHHHH---CCCeeCCCCCcceEEEcCCC
Confidence                   1247999999999988632 11      11   14578899999999999   79999999 99999999899


Q ss_pred             ceeEccCCccccccccc---------cccccccCccccCCCCCCC
Q 028629          171 VAKISSYNLPLLAENAE---------KVGHVTPYSGSINPTNSAR  206 (206)
Q Consensus       171 ~~kl~df~~a~~~~~~~---------~~~~~~~~~~y~aPE~~~~  206 (206)
                      .++|+|||+|+......         ......+++.|+|||.+++
T Consensus       150 ~ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~~~  194 (365)
T PRK09188        150 EAAVIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAPDALTP  194 (365)
T ss_pred             CEEEEECccceecccCcchhhhhhhhhhhhhhccCccCCcccCCh
Confidence            99999999998665432         1123566777999998763

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.95  E-value=8.6e-27  Score=179.17  Aligned_cols=169  Identities=17%  Similarity=0.333  Sum_probs=138.2

Q ss_pred             hcCCcccceeccCcceeEEEEEEeC----CcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKN----GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~----~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ..+|...+.||+|++|.||+|...+    ...+++|...... ....+.+.+|+.++++++|+|++++++++..      
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~------   78 (270)
T cd05056           5 REDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE------   78 (270)
T ss_pred             hhhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC------
Confidence            3568889999999999999998642    2468899886554 3345678899999999999999999987743      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                        ...+++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++++||
T Consensus        79 --~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~lH~---~~~~H~dl~p~nili~~~~~~~l~d~  151 (270)
T cd05056          79 --NPVWIVMELAPLGELRSYLQVNK--YSLDLASLILYSYQLSTALAYLES---KRFVHRDIAARNVLVSSPDCVKLGDF  151 (270)
T ss_pred             --CCcEEEEEcCCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccChheEEEecCCCeEEccC
Confidence              34689999999999999997643  358999999999999999999999   79999999999999999999999999


Q ss_pred             Ccccccccccc--ccccccCccccCCCCC
Q 028629          178 NLPLLAENAEK--VGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~--~~~~~~~~~y~aPE~~  204 (206)
                      |++........  .....++..|+|||..
T Consensus       152 g~~~~~~~~~~~~~~~~~~~~~y~aPE~~  180 (270)
T cd05056         152 GLSRYLEDESYYKASKGKLPIKWMAPESI  180 (270)
T ss_pred             ceeeecccccceecCCCCccccccChhhh
Confidence            99986644321  1112334579999964

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.95  E-value=1.2e-26  Score=177.29  Aligned_cols=160  Identities=19%  Similarity=0.296  Sum_probs=131.8

Q ss_pred             eeccCcceeEEEEEEe---CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEE
Q 028629           31 FMGEGSKGQMYRGRLK---NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI  105 (206)
Q Consensus        31 ~lg~g~~g~v~~~~~~---~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (206)
                      .||+|+||.||+|.++   ++..+|+|.++...  ....+.+.+|+.+++.++|+||+++++++.        ....+++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~--------~~~~~lv   73 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE--------AESWMLV   73 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc--------CCCcEEE
Confidence            5899999999999753   57889999886443  223467888999999999999999998763        2457899


Q ss_pred             EeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccc
Q 028629          106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       106 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                      |||+++++|.+++...   ..+++..+..++.|++.||.++|+   .+++|+||+|.||++++++.++|+|||++.....
T Consensus        74 ~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~  147 (257)
T cd05116          74 MELAELGPLNKFLQKN---KHVTEKNITELVHQVSMGMKYLEE---TNFVHRDLAARNVLLVTQHYAKISDFGLSKALGA  147 (257)
T ss_pred             EecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccchhhEEEcCCCeEEECCCccccccCC
Confidence            9999999999998765   358899999999999999999999   7999999999999999999999999999986644


Q ss_pred             ccc----ccccccCccccCCCCC
Q 028629          186 AEK----VGHVTPYSGSINPTNS  204 (206)
Q Consensus       186 ~~~----~~~~~~~~~y~aPE~~  204 (206)
                      ...    .....++..|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~~y~aPE~~  170 (257)
T cd05116         148 DENYYKAKTHGKWPVKWYAPECM  170 (257)
T ss_pred             CCCeeeecCCCCCCccccCHhHh
Confidence            321    1112334679999964

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.95  E-value=8.1e-27  Score=182.38  Aligned_cols=174  Identities=20%  Similarity=0.388  Sum_probs=140.3

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe--------CCcEEEEEEeecCC-CccHHHHHHHHHHHhcc-CCCceeeeccccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK--------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCF   90 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~--------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~   90 (206)
                      ....+|...+.||+|+||.||++...        ++..+++|.+.... ....+.+.+|+.+++.+ +|+||+++++.+.
T Consensus        12 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~   91 (304)
T cd05101          12 FSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT   91 (304)
T ss_pred             ccHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEe
Confidence            34567899999999999999999742        24478999886432 33456788999999999 7999999999886


Q ss_pred             cccccCCCCceEEEEEeecCCCCHHHHHhcCCC-------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceecc
Q 028629           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA-------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSN  157 (206)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~  157 (206)
                      .       ....+++|||+++++|.+++.....             ...+++..+..++.|++.||.|||+   .+++|+
T Consensus        92 ~-------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~---~givH~  161 (304)
T cd05101          92 Q-------DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLAS---QKCIHR  161 (304)
T ss_pred             c-------CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHH---CCeeec
Confidence            5       5678999999999999999875321             1357888999999999999999999   799999


Q ss_pred             CCccccEEecCCCceeEccCCcccccccccc---ccccccCccccCCCCC
Q 028629          158 NLKITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  204 (206)
Q Consensus       158 dl~p~nil~~~~~~~kl~df~~a~~~~~~~~---~~~~~~~~~y~aPE~~  204 (206)
                      ||||+||++++++.++|+|||+++.......   .....++..|+|||..
T Consensus       162 dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  211 (304)
T cd05101         162 DLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEAL  211 (304)
T ss_pred             ccccceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhh
Confidence            9999999999999999999999987654321   1223345679999964

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.95  E-value=1.1e-26  Score=178.24  Aligned_cols=170  Identities=21%  Similarity=0.385  Sum_probs=138.6

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCc---EEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGT---FIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~---~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .++|+..+.||+|++|.||+|... ++.   .+++|.++... ....+.+.+|++++++++|+|++++.+++..      
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~------   77 (268)
T cd05063           4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTK------   77 (268)
T ss_pred             hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEcc------
Confidence            457888999999999999999975 333   68999886442 3335678899999999999999999998865      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       .+..+++|||+++++|.+++....  ..+++..+..++.|++.|+.|||+   .+++|+||+|+||++++++.++++||
T Consensus        78 -~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~dlkp~Nili~~~~~~kl~df  151 (268)
T cd05063          78 -FKPAMIITEYMENGALDKYLRDHD--GEFSSYQLVGMLRGIAAGMKYLSD---MNYVHRDLAARNILVNSNLECKVSDF  151 (268)
T ss_pred             -CCCcEEEEEcCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccchhhEEEcCCCcEEECCC
Confidence             457899999999999999987543  358899999999999999999999   79999999999999999999999999


Q ss_pred             Ccccccccccccc----ccccCccccCCCCC
Q 028629          178 NLPLLAENAEKVG----HVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~~----~~~~~~~y~aPE~~  204 (206)
                      |++..........    ....+..|+|||..
T Consensus       152 g~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~  182 (268)
T cd05063         152 GLSRVLEDDPEGTYTTSGGKIPIRWTAPEAI  182 (268)
T ss_pred             ccceecccccccceeccCCCcCceecCHHHh
Confidence            9997664322111    11223469999964

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.95  E-value=8.4e-27  Score=182.29  Aligned_cols=173  Identities=23%  Similarity=0.349  Sum_probs=140.8

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCC-CccHHHHHHHHHHHhcc-CCCceeeeccccccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFEC   92 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~   92 (206)
                      -..++|...+.||+|+||.||++...      ++..+|+|.++... ....+.+.+|+.+++++ +|+||+++++.+.. 
T Consensus        32 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~-  110 (302)
T cd05055          32 FPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTI-  110 (302)
T ss_pred             ccHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEec-
Confidence            34467999999999999999999742      35579999886442 33345788999999999 79999999998755 


Q ss_pred             cccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCce
Q 028629           93 YFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVA  172 (206)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~  172 (206)
                            .+..++++||+.+++|.+++..... ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.+
T Consensus       111 ------~~~~~lv~e~~~~~~L~~~i~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~  180 (302)
T cd05055         111 ------GGPILVITEYCCYGDLLNFLRRKRE-SFLTLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNVLLTHGKIV  180 (302)
T ss_pred             ------CCceEEEEEcCCCCcHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeehhhhccceEEEcCCCeE
Confidence                  5578999999999999999875432 348999999999999999999999   799999999999999999999


Q ss_pred             eEccCCcccccccccc---ccccccCccccCCCCC
Q 028629          173 KISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  204 (206)
Q Consensus       173 kl~df~~a~~~~~~~~---~~~~~~~~~y~aPE~~  204 (206)
                      +++|||++........   .....++..|+|||..
T Consensus       181 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  215 (302)
T cd05055         181 KICDFGLARDIMNDSNYVVKGNARLPVKWMAPESI  215 (302)
T ss_pred             EECCCcccccccCCCceeecCCCCcccccCCHhhh
Confidence            9999999986543221   1123445679999964

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.95  E-value=1.6e-26  Score=175.99  Aligned_cols=168  Identities=24%  Similarity=0.452  Sum_probs=139.9

Q ss_pred             CcccceeccCcceeEEEEEEe-CC----cEEEEEEeecCCCc-cHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           26 FDTSAFMGEGSKGQMYRGRLK-NG----TFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~-~~----~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      +.+.+.||.|+||.||++... .+    ..+|+|.+...... ..+.+.+|+..++.+.|+|++++++++..       .
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~   73 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTE-------E   73 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcC-------C
Confidence            356788999999999999975 33    88999999755433 56788999999999999999999998865       4


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +..+++||++++++|.+++..... ..+++..++.++.|++.|+.+||+   .+++|+||+|+||++++++.++++|||+
T Consensus        74 ~~~~~i~e~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~ql~~~l~~lh~---~~~~h~dl~~~nil~~~~~~~~l~dfg~  149 (258)
T smart00219       74 EPLMIVMEYMEGGDLLDYLRKNRP-KELSLSDLLSFALQIARGMEYLES---KNFIHRDLAARNCLVGENLVVKISDFGL  149 (258)
T ss_pred             CeeEEEEeccCCCCHHHHHHhhhh-ccCCHHHHHHHHHHHHHHHHHHhc---CCeeecccccceEEEccCCeEEEcccCC
Confidence            679999999999999999876432 228999999999999999999999   7999999999999999999999999999


Q ss_pred             ccccccccccc--ccccCccccCCCCC
Q 028629          180 PLLAENAEKVG--HVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~--~~~~~~~y~aPE~~  204 (206)
                      +..........  ...++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~y~~Pe~~  176 (258)
T smart00219      150 SRDLYDDDYYKKKGGKLPIRWMAPESL  176 (258)
T ss_pred             ceecccccccccccCCCcccccChHHh
Confidence            98765442111  12355789999964

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.95  E-value=2.1e-26  Score=177.01  Aligned_cols=175  Identities=15%  Similarity=0.319  Sum_probs=137.3

Q ss_pred             CcccceeccCcceeEEEEEEe-C---CcEEEEEEeecCCC--ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           26 FDTSAFMGEGSKGQMYRGRLK-N---GTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~-~---~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      |...+.||+|+||.||+|... +   +..||+|.+.....  .....+.+|++.++.++|+|++++++.+...... ...
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~-~~~   79 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSL-QKI   79 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCcc-ccC
Confidence            567889999999999999864 2   36799999875432  2345788999999999999999999987642110 112


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCC---CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGH---AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                      ...++++||+++++|...+....   ....+++.....++.|++.||.|||+   .+++|+||+|+||++++++.++|+|
T Consensus        80 ~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~d  156 (273)
T cd05035          80 PKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSN---RNFIHRDLAARNCMLREDMTVCVAD  156 (273)
T ss_pred             cccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHh---CCeeccccchheEEECCCCeEEECC
Confidence            35799999999999998885421   12458899999999999999999999   7999999999999999999999999


Q ss_pred             CCccccccccc---cccccccCccccCCCCC
Q 028629          177 YNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      ||+++......   .......+..|+|||..
T Consensus       157 fg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  187 (273)
T cd05035         157 FGLSKKIYSGDYYRQGRIAKMPVKWIAIESL  187 (273)
T ss_pred             ccceeeccccccccccccccCCccccCHhhc
Confidence            99998654332   11122345579999964

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.95  E-value=5.7e-27  Score=181.35  Aligned_cols=171  Identities=23%  Similarity=0.315  Sum_probs=138.2

Q ss_pred             cCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCCCc-cHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      .+|...+.||+|+||.||+|...      ++..||+|.+...... ..+.+.+|+.+++.++|+||+++++++..     
T Consensus         5 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~-----   79 (283)
T cd05091           5 STVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTK-----   79 (283)
T ss_pred             HHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC-----
Confidence            45788899999999999999864      2468999999754332 34568889999999999999999998865     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCC-------------CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCcccc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGH-------------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITD  163 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~-------------~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~n  163 (206)
                        ....++++||+.+++|.+++....             ....+++..++.++.|++.||.|+|+   .+++|+||||+|
T Consensus        80 --~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~---~gi~H~dlkp~N  154 (283)
T cd05091          80 --EQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSS---HHVVHKDLATRN  154 (283)
T ss_pred             --CCceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHH---cCccccccchhh
Confidence              557899999999999999885321             01347888899999999999999999   799999999999


Q ss_pred             EEecCCCceeEccCCccccccccc---cccccccCccccCCCCC
Q 028629          164 ILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       164 il~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      |++++++.+||+|||+++......   ......++..|+|||+.
T Consensus       155 il~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  198 (283)
T cd05091         155 VLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAI  198 (283)
T ss_pred             eEecCCCceEecccccccccccchheeeccCccCCccccCHHHH
Confidence            999999999999999987654322   12223446789999964

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.95  E-value=1.2e-26  Score=177.08  Aligned_cols=158  Identities=20%  Similarity=0.356  Sum_probs=130.2

Q ss_pred             ceeccCcceeEEEEEEeC-C----------cEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           30 AFMGEGSKGQMYRGRLKN-G----------TFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~~-~----------~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      +.||+|+||.||+|...+ +          ..+++|.+...... ...+.+|+.++++++|+|++++++.+..       
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------   72 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD-SLAFFETASLMSQLSHKHLVKLYGVCVR-------   72 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhh-HHHHHHHHHHHHcCCCcchhheeeEEec-------
Confidence            468999999999999763 3          24777776544332 6778899999999999999999998753       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC-------c
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-------V  171 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~-------~  171 (206)
                       ...++++||+++++|.+++....  ..+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++       .
T Consensus        73 -~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dlkp~Nill~~~~~~~~~~~~  146 (259)
T cd05037          73 -DENIMVEEYVKFGPLDVFLHREK--NNVSLHWKLDVAKQLASALHYLED---KKLVHGNVCGKNILVARYGLNEGYVPF  146 (259)
T ss_pred             -CCcEEEEEcCCCCcHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHhh---CCeecccCccceEEEecCccccCCcee
Confidence             34689999999999999987653  258899999999999999999999   7999999999999999877       7


Q ss_pred             eeEccCCccccccccccccccccCccccCCCCC
Q 028629          172 AKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       172 ~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ++|+|||++.....   .....++..|+|||+.
T Consensus       147 ~kl~Dfg~a~~~~~---~~~~~~~~~y~aPE~~  176 (259)
T cd05037         147 IKLSDPGIPITVLS---REERVERIPWIAPECI  176 (259)
T ss_pred             EEeCCCCccccccc---ccccccCCCccChhhh
Confidence            99999999987654   2223456679999975

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.95  E-value=6.1e-27  Score=178.49  Aligned_cols=165  Identities=20%  Similarity=0.399  Sum_probs=137.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      .++|...+.||+|+||.||++.. +++.+++|.+...  .....+.+|+.+++.++|+|++++.+.+..        +..
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~--~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~--------~~~   73 (254)
T cd05083           5 LQKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCD--VTAQAFLEETAVMTKLHHKNLVRLLGVILH--------NGL   73 (254)
T ss_pred             HHHceeeeeeccCCCCceEeccc-CCCceEEEeecCc--chHHHHHHHHHHHHhCCCCCcCeEEEEEcC--------CCc
Confidence            35689999999999999999875 5888999988643  234678889999999999999999987743        347


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      ++++||+++++|.+++..... ..+++..++.++.|++.|+.|||+   .+++|+||+|+||+++.++.++|+|||++..
T Consensus        74 ~~v~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~qi~~al~~lH~---~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~  149 (254)
T cd05083          74 YIVMELMSKGNLVNFLRTRGR-ALVSVIQLLQFSLDVAEGMEYLES---KKLVHRDLAARNILVSEDGVAKVSDFGLARV  149 (254)
T ss_pred             EEEEECCCCCCHHHHHHhcCc-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccCcceEEEcCCCcEEECCCcccee
Confidence            899999999999999876532 457899999999999999999999   7999999999999999999999999999976


Q ss_pred             ccccccccccccCccccCCCCC
Q 028629          183 AENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       183 ~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      .....  .....+..|+|||..
T Consensus       150 ~~~~~--~~~~~~~~y~~pe~~  169 (254)
T cd05083         150 GSMGV--DNSKLPVKWTAPEAL  169 (254)
T ss_pred             ccccC--CCCCCCceecCHHHh
Confidence            54322  112345679999964

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.95  E-value=2.6e-27  Score=172.67  Aligned_cols=180  Identities=15%  Similarity=0.182  Sum_probs=148.8

Q ss_pred             HhcCCcccceeccCcceeEEEEEE-eCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ..++|++.+.||+|+|+.|+++.. .+++.||+|.+........+...+|++.-++++|||++++.++.+...-+  ...
T Consensus        19 n~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D--~~~   96 (302)
T KOG2345|consen   19 NNKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKD--GKH   96 (302)
T ss_pred             cCceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhcc--Cce
Confidence            357899999999999999999994 48999999999988878888999999999999999999999988753322  245


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCC-CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHA-WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ..|+++.|+..|+|.+.++.... ...+++..++.|+.++|.||.+||+. ..++.||||||.||++++.+.+++.|||.
T Consensus        97 ~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~~~~~vl~D~GS  175 (302)
T KOG2345|consen   97 EAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSDSGLPVLMDLGS  175 (302)
T ss_pred             eEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecCCCceEEEeccC
Confidence            68999999999999998876432 24799999999999999999999993 23599999999999999999999999999


Q ss_pred             ccccc----ccc------cccccccCccccCCCCC
Q 028629          180 PLLAE----NAE------KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~----~~~------~~~~~~~~~~y~aPE~~  204 (206)
                      +....    +..      .-....-|.-|+|||..
T Consensus       176 ~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf  210 (302)
T KOG2345|consen  176 ATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELF  210 (302)
T ss_pred             ccccceEeechHHHHHHHHHHHHhCCCcccCchhe
Confidence            96432    111      11113556779999964

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.95  E-value=8.1e-27  Score=182.67  Aligned_cols=172  Identities=20%  Similarity=0.385  Sum_probs=138.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEe--------CCcEEEEEEeecCC-CccHHHHHHHHHHHhcc-CCCceeeeccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK--------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFEC   92 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~--------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~   92 (206)
                      ..+|.+.+.||+|+||.||++...        ++..+|+|.++... ......+..|+++++.+ +|+||+++++.+.. 
T Consensus        17 ~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~-   95 (307)
T cd05098          17 RDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ-   95 (307)
T ss_pred             hHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEec-
Confidence            467999999999999999999853        13469999887542 33345688899999999 79999999998865 


Q ss_pred             cccCCCCceEEEEEeecCCCCHHHHHhcCCC-------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCC
Q 028629           93 YFDDSSVSRIFLIFEYVPNGTLRSWISEGHA-------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNL  159 (206)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl  159 (206)
                            .+..++++||+++++|.+++.....             ...+++..++.++.|++.||.|||+   .+++|+||
T Consensus        96 ------~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~---~gi~H~dl  166 (307)
T cd05098          96 ------DGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLAS---KKCIHRDL  166 (307)
T ss_pred             ------CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHH---CCcccccc
Confidence                  5678999999999999999975321             1348889999999999999999999   79999999


Q ss_pred             ccccEEecCCCceeEccCCcccccccccc---ccccccCccccCCCCC
Q 028629          160 KITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  204 (206)
Q Consensus       160 ~p~nil~~~~~~~kl~df~~a~~~~~~~~---~~~~~~~~~y~aPE~~  204 (206)
                      +|+||++++++.++|+|||++........   ......+..|+|||..
T Consensus       167 kp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~  214 (307)
T cd05098         167 AARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEAL  214 (307)
T ss_pred             cHHheEEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHh
Confidence            99999999999999999999976543211   1112234579999953

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.95  E-value=2.1e-26  Score=175.19  Aligned_cols=170  Identities=16%  Similarity=0.336  Sum_probs=145.2

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC--ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +|...+.||.|++|.||++... ++..+++|.+.....  .....+.+|+++++.++|+|++++.+.+..       ...
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~-------~~~   73 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEE-------KGK   73 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEec-------CCE
Confidence            5888899999999999999976 789999999975533  455678889999999999999999988765       468


Q ss_pred             EEEEEeecCCCCHHHHHhcCC-CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          102 IFLIFEYVPNGTLRSWISEGH-AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      .++++|++++++|.+++.... ....+++..++.++.+++.|+.+||+   .+++|+||+|+||++++++.++|+|||.+
T Consensus        74 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~---~~~~H~dl~~~nil~~~~~~~~l~d~~~~  150 (258)
T cd08215          74 LCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHS---RKILHRDIKPQNIFLTSNGLVKLGDFGIS  150 (258)
T ss_pred             EEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHh---CCEecccCChHHeEEcCCCcEEECCccce
Confidence            999999999999999887642 12568999999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccc-cccccccCccccCCCCC
Q 028629          181 LLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ....... ......++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~~~y~~pe~~  175 (258)
T cd08215         151 KVLSSTVDLAKTVVGTPYYLSPELC  175 (258)
T ss_pred             eecccCcceecceeeeecccChhHh
Confidence            8765543 33345677889999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.95  E-value=2e-26  Score=176.09  Aligned_cols=161  Identities=20%  Similarity=0.311  Sum_probs=130.8

Q ss_pred             eeccCcceeEEEEEEe---CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEEE
Q 028629           31 FMGEGSKGQMYRGRLK---NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIF  106 (206)
Q Consensus        31 ~lg~g~~g~v~~~~~~---~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~  106 (206)
                      .||+|+||.||+|.+.   ++..||+|.+.... ....+.+.+|+.++++++|+||+++++++.        ....++++
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~--------~~~~~lv~   73 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCE--------AEALMLVM   73 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc--------CCCeEEEE
Confidence            3899999999999864   35579999886543 233456889999999999999999999763        24589999


Q ss_pred             eecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccccc
Q 028629          107 EYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENA  186 (206)
Q Consensus       107 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~  186 (206)
                      ||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++......
T Consensus        74 e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~  148 (257)
T cd05115          74 EMASGGPLNKFLSGKK--DEITVSNVVELMHQVSMGMKYLEG---KNFVHRDLAARNVLLVNQHYAKISDFGLSKALGAD  148 (257)
T ss_pred             EeCCCCCHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHh---cCeeecccchheEEEcCCCcEEeccCCccccccCC
Confidence            9999999999887533  458999999999999999999999   79999999999999999999999999999865433


Q ss_pred             ccc----cccccCccccCCCCC
Q 028629          187 EKV----GHVTPYSGSINPTNS  204 (206)
Q Consensus       187 ~~~----~~~~~~~~y~aPE~~  204 (206)
                      ...    ....++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~  170 (257)
T cd05115         149 DSYYKARSAGKWPLKWYAPECI  170 (257)
T ss_pred             ccceeccCCCCCCcccCCHHHH
Confidence            211    111224579999964

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.95  E-value=1.7e-26  Score=177.70  Aligned_cols=165  Identities=27%  Similarity=0.428  Sum_probs=131.7

Q ss_pred             ceeccCcceeEEEEEEe-CCc--EEEEEEeecCC-CccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCCceEEE
Q 028629           30 AFMGEGSKGQMYRGRLK-NGT--FIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~~~--~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +.||+|+||.||+|... ++.  .+++|.+.... ....+.+.+|++++.++ +|+|++++++++..       .+..++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~-------~~~~~l   73 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH-------RGYLYL   73 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEec-------CCCceE
Confidence            36899999999999975 444  46888876432 33446788899999999 79999999998865       556899


Q ss_pred             EEeecCCCCHHHHHhcCC-------------CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc
Q 028629          105 IFEYVPNGTLRSWISEGH-------------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV  171 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~-------------~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~  171 (206)
                      +|||+++++|.+++....             ....+++..+..++.|++.|+.|||+   .+++|+||+|+||++++++.
T Consensus        74 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~---~~i~H~dikp~nili~~~~~  150 (270)
T cd05047          74 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYV  150 (270)
T ss_pred             EEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccccceEEEcCCCe
Confidence            999999999999986532             11347899999999999999999999   79999999999999999999


Q ss_pred             eeEccCCccccccccccccccccCccccCCCCC
Q 028629          172 AKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       172 ~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ++++|||++..............+..|+|||+.
T Consensus       151 ~kl~dfgl~~~~~~~~~~~~~~~~~~y~apE~~  183 (270)
T cd05047         151 AKIADFGLSRGQEVYVKKTMGRLPVRWMAIESL  183 (270)
T ss_pred             EEECCCCCccccchhhhccCCCCccccCChHHH
Confidence            999999998643322222223345679999964

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.95  E-value=3e-26  Score=177.22  Aligned_cols=167  Identities=20%  Similarity=0.343  Sum_probs=139.3

Q ss_pred             CcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           26 FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      |+..+.||.|++|.||+|... +|..|++|.+....  ......+.+|++.++.++|+|++++++++..       .+..
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~-------~~~~   73 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHS-------ENKL   73 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheecc-------CCeE
Confidence            677889999999999999976 79999999987543  2233567889999999999999999998865       5789


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      ++++||++ ++|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++..
T Consensus        74 ~iv~e~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~L~~lH~---~~~~H~dl~p~nil~~~~~~~~l~df~~~~~  148 (283)
T cd07835          74 YLVFEFLD-LDLKKYMDSSPL-TGLDPPLIKSYLYQLLQGIAYCHS---HRVLHRDLKPQNLLIDREGALKLADFGLARA  148 (283)
T ss_pred             EEEEeccC-cCHHHHHhhCCC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCHHHEEEcCCCcEEEeecccccc
Confidence            99999995 589998876532 358999999999999999999999   7999999999999999999999999999976


Q ss_pred             ccccc-cccccccCccccCCCCC
Q 028629          183 AENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       183 ~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ..... ......++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~~~~aPE~~  171 (283)
T cd07835         149 FGVPVRTYTHEVVTLWYRAPEIL  171 (283)
T ss_pred             cCCCccccCccccccCCCCCcee
Confidence            54322 11223457789999964

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.95  E-value=9.1e-27  Score=178.35  Aligned_cols=169  Identities=15%  Similarity=0.304  Sum_probs=144.2

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ++|+..+.||.|++|.||++... +++.+++|.+.... ......+.+|++.++.+.|+|++++++.+..       .+.
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-------~~~   73 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYN-------NGD   73 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeec-------CCE
Confidence            36788899999999999999976 68999999987553 3345678899999999999999999998865       578


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++|++++++|.+++....  ..+++..+..++.|++.++.|+|+.  .+++|+||+|+||++++++.++|+|||.+.
T Consensus        74 ~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lH~~--~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~  149 (265)
T cd06605          74 ISICMEYMDGGSLDKILKEVQ--GRIPERILGKIAVAVLKGLTYLHEK--HKIIHRDVKPSNILVNSRGQIKLCDFGVSG  149 (265)
T ss_pred             EEEEEEecCCCcHHHHHHHcc--CCCCHHHHHHHHHHHHHHHHHHcCC--CCeecCCCCHHHEEECCCCCEEEeecccch
Confidence            999999999899999987643  4588899999999999999999983  499999999999999999999999999998


Q ss_pred             cccccccccccccCccccCCCCC
Q 028629          182 LAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ......... ..++..|+|||..
T Consensus       150 ~~~~~~~~~-~~~~~~y~~PE~~  171 (265)
T cd06605         150 QLVNSLAKT-FVGTSSYMAPERI  171 (265)
T ss_pred             hhHHHHhhc-ccCChhccCHHHH
Confidence            765433222 6777889999964

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.94  E-value=3e-26  Score=174.25  Aligned_cols=169  Identities=21%  Similarity=0.357  Sum_probs=146.0

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC--ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +|...+.||+|++|.||+|... ++..+++|.+.....  ...+.+.+|+..+++++|+|++++.+.+...     ....
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-----~~~~   75 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDE-----EKNT   75 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecC-----CCCe
Confidence            4778899999999999999977 789999999875542  4467788999999999999999999988651     1267


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++|++++++|.+++...   ..+++..++.++.|++.++.|||+   .+++|+||+|+||++++++.++|+|||.+.
T Consensus        76 ~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lh~---~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~  149 (260)
T cd06606          76 LNIFLEYVSGGSLSSLLKKF---GKLPEPVIRKYTRQILEGLAYLHS---NGIVHRDIKGANILVDSDGVVKLADFGCAK  149 (260)
T ss_pred             EEEEEEecCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEcCCCCEEEcccccEE
Confidence            89999999999999998875   368999999999999999999999   799999999999999999999999999998


Q ss_pred             ccccccc---ccccccCccccCCCCC
Q 028629          182 LAENAEK---VGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~~---~~~~~~~~~y~aPE~~  204 (206)
                      .......   .....++..|++||..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~y~~pE~~  175 (260)
T cd06606         150 RLGDIETGEGTGSVRGTPYWMAPEVI  175 (260)
T ss_pred             ecccccccccccCCCCCccccCHhhh
Confidence            8766543   3446777889999965

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.94  E-value=2.9e-26  Score=179.36  Aligned_cols=178  Identities=15%  Similarity=0.302  Sum_probs=141.8

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeecccccccccc-C
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD-D   96 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~-~   96 (206)
                      ...++|...+.||+|++|.||+|... ++..||+|.+....  ......+.+|++++++++|+|++++++++...... .
T Consensus         9 ~~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   88 (310)
T cd07865           9 DEVSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYN   88 (310)
T ss_pred             chhhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEeccccccc
Confidence            34678999999999999999999976 78999999886432  22334567899999999999999999987653221 1


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                      ......++++||+.+ ++.+.+....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|
T Consensus        89 ~~~~~~~lv~e~~~~-~l~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dl~p~nil~~~~~~~kl~d  162 (310)
T cd07865          89 RYKGSFYLVFEFCEH-DLAGLLSNKN--VKFTLSEIKKVMKMLLNGLYYIHR---NKILHRDMKAANILITKDGILKLAD  162 (310)
T ss_pred             CCCceEEEEEcCCCc-CHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEECCCCcEEECc
Confidence            223567999999965 8887776543  358899999999999999999999   7999999999999999999999999


Q ss_pred             CCcccccccccc-----ccccccCccccCCCCC
Q 028629          177 YNLPLLAENAEK-----VGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~~~-----~~~~~~~~~y~aPE~~  204 (206)
                      ||++........     .....++..|+|||..
T Consensus       163 fg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  195 (310)
T cd07865         163 FGLARAFSLSKNSKPNRYTNRVVTLWYRPPELL  195 (310)
T ss_pred             CCCcccccCCcccCCCCccCcccCccccCcHHh
Confidence            999976543221     1224566789999963

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.94  E-value=2.2e-26  Score=180.38  Aligned_cols=172  Identities=22%  Similarity=0.343  Sum_probs=140.8

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC--ccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ..++|+..+.||.|++|.||+|... +|..||+|.+.....  .......+|+.++++++|+|++++++++..     ..
T Consensus         5 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~   79 (309)
T cd07845           5 SVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVG-----KH   79 (309)
T ss_pred             cccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEec-----CC
Confidence            4678999999999999999999976 799999999875432  223356679999999999999999988754     22


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+..++++||+.+ +|.+++....  ..+++..++.++.|++.|+.|||+   .+++|+||+|+||++++++.++|+|||
T Consensus        80 ~~~~~lv~e~~~~-~l~~~l~~~~--~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~kL~dfg  153 (309)
T cd07845          80 LDSIFLVMEYCEQ-DLASLLDNMP--TPFSESQVKCLMLQLLRGLQYLHE---NFIIHRDLKVSNLLLTDKGCLKIADFG  153 (309)
T ss_pred             CCeEEEEEecCCC-CHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEECccc
Confidence            3568999999975 8888877543  458899999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccc-cccccccCccccCCCCC
Q 028629          179 LPLLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      .+....... ......++..|+|||..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~y~aPE~~  180 (309)
T cd07845         154 LARTYGLPAKPMTPKVVTLWYRAPELL  180 (309)
T ss_pred             eeeecCCccCCCCcccccccccChhhh
Confidence            998765432 12223446779999964

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.94  E-value=2.4e-26  Score=178.31  Aligned_cols=172  Identities=20%  Similarity=0.294  Sum_probs=142.0

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ++|...+.||.|++|.||++... ++..+++|.+.... ......+.+|+++++.++|+||+++++.+..     ...+.
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~~~~   75 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLD-----ESSSS   75 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEc-----cCCCe
Confidence            46888999999999999999975 68899999987543 2345678999999999999999999998754     22457


Q ss_pred             EEEEEeecCCCCHHHHHhcC-CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          102 IFLIFEYVPNGTLRSWISEG-HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ++++|||+++++|.+++... .....+++..+..++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||++
T Consensus        76 ~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~---~~i~H~dl~~~nil~~~~~~~~l~dfg~~  152 (287)
T cd06621          76 IGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHS---RKIIHRDIKPSNILLTRKGQVKLCDFGVS  152 (287)
T ss_pred             EEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEecCCeEEEeecccc
Confidence            89999999999999876532 112457889999999999999999999   79999999999999999999999999998


Q ss_pred             ccccccccccccccCccccCCCCC
Q 028629          181 LLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ........ ....++..|+|||..
T Consensus       153 ~~~~~~~~-~~~~~~~~y~~pE~~  175 (287)
T cd06621         153 GELVNSLA-GTFTGTSFYMAPERI  175 (287)
T ss_pred             cccccccc-ccccCCccccCHHHh
Confidence            76544322 234567789999964

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.94  E-value=3.5e-26  Score=173.25  Aligned_cols=168  Identities=20%  Similarity=0.437  Sum_probs=146.5

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEE
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~  103 (206)
                      .|...+.||+|++|.||++... ++..+++|.+..........+.+|++.+++++|++++++.+.+..       ....+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~~~   73 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLK-------KDELW   73 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEec-------CCeEE
Confidence            4778899999999999999976 788999999976555466788999999999999999999998865       46789


Q ss_pred             EEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccc
Q 028629          104 LIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  183 (206)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~  183 (206)
                      +++||+++++|.+++....  ..+++..++.++.|++.++.+||+   .+++|+||+|+||++++++.++|+|||.+...
T Consensus        74 l~~e~~~~~~L~~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lh~---~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~  148 (253)
T cd05122          74 IVMEFCSGGSLKDLLKSTN--QTLTESQIAYVCKELLKGLEYLHS---NGIIHRDIKAANILLTSDGEVKLIDFGLSAQL  148 (253)
T ss_pred             EEEecCCCCcHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHhhc---CCEecCCCCHHHEEEccCCeEEEeeccccccc
Confidence            9999999999999987653  358999999999999999999999   79999999999999999999999999999877


Q ss_pred             cccccccccccCccccCCCCC
Q 028629          184 ENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       184 ~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ..........++..|++||..
T Consensus       149 ~~~~~~~~~~~~~~~~~PE~~  169 (253)
T cd05122         149 SDTKARNTMVGTPYWMAPEVI  169 (253)
T ss_pred             cccccccceecCCcccCHHHH
Confidence            654423446778889999964

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.94  E-value=1.9e-26  Score=179.18  Aligned_cols=170  Identities=24%  Similarity=0.362  Sum_probs=136.3

Q ss_pred             CCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      +|+..+.||+|+||.||+|...      +...+++|.+..... .....+.+|+.+++.+.|+||+++++.+..      
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~------   74 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQ------   74 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEec------
Confidence            4788899999999999999853      235688888864432 334678899999999999999999998754      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCC---------------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceec
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHA---------------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFS  156 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~---------------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h  156 (206)
                       .+..++++||+.+++|.+++.....                     ...+++..++.++.|++.||.|||+   .+++|
T Consensus        75 -~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~---~~ivH  150 (290)
T cd05045          75 -DGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAE---MKLVH  150 (290)
T ss_pred             -CCCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHH---CCeeh
Confidence             5568999999999999998764210                     1347889999999999999999999   79999


Q ss_pred             cCCccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCCC
Q 028629          157 NNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       157 ~dl~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      +||+|+||++++++.++|+|||+++......   ......++..|+|||+.
T Consensus       151 ~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~  201 (290)
T cd05045         151 RDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESL  201 (290)
T ss_pred             hhhhhheEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHH
Confidence            9999999999999999999999997653221   12223445679999964

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.94  E-value=1.2e-26  Score=183.77  Aligned_cols=174  Identities=20%  Similarity=0.384  Sum_probs=139.1

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe--------CCcEEEEEEeecCC-CccHHHHHHHHHHHhcc-CCCceeeeccccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK--------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCF   90 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~--------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~   90 (206)
                      ....+|.+.+.||+|+||.||++...        .+..+++|.+.... ....+.+.+|+.+++++ +|+||+++++++.
T Consensus         9 ~~~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~   88 (334)
T cd05100           9 LSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACT   88 (334)
T ss_pred             cCHhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEc
Confidence            33457999999999999999999842        12368999887443 23356788999999999 7999999999886


Q ss_pred             cccccCCCCceEEEEEeecCCCCHHHHHhcCC-------------CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceecc
Q 028629           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGH-------------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSN  157 (206)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~-------------~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~  157 (206)
                      .       .+..++++||+++++|.+++....             ....+++..+..++.|++.||.|||+   .+++|+
T Consensus        89 ~-------~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~---~givH~  158 (334)
T cd05100          89 Q-------DGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLAS---QKCIHR  158 (334)
T ss_pred             c-------CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHH---CCeecc
Confidence            5       567899999999999999986532             11347888999999999999999999   799999


Q ss_pred             CCccccEEecCCCceeEccCCcccccccccc---ccccccCccccCCCCC
Q 028629          158 NLKITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  204 (206)
Q Consensus       158 dl~p~nil~~~~~~~kl~df~~a~~~~~~~~---~~~~~~~~~y~aPE~~  204 (206)
                      ||+|+||++++++.++|+|||+++.......   .....++..|+|||..
T Consensus       159 dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  208 (334)
T cd05100         159 DLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEAL  208 (334)
T ss_pred             ccccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHh
Confidence            9999999999999999999999986543221   1112334579999964

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.94  E-value=1.9e-26  Score=180.93  Aligned_cols=170  Identities=24%  Similarity=0.337  Sum_probs=138.3

Q ss_pred             CCcccceeccCcceeEEEEEEe---CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK---NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~---~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      +|+..+.||+|++|.||+|...   ++..||+|.+....   ......+.+|+.++++++|+|++++++++..     ..
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~   75 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLE-----HA   75 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeC-----CC
Confidence            4788899999999999999964   47899999997633   3445677889999999999999999998865     22


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCC--CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC----CCce
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGH--AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ----NLVA  172 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~----~~~~  172 (206)
                      ....++++|++.+ ++.+++....  ....+++..++.++.|++.||.|||+   .+++|+||+|+||++++    ++.+
T Consensus        76 ~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~h~dlkp~Nil~~~~~~~~~~~  151 (316)
T cd07842          76 DKSVYLLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHS---NWVLHRDLKPANILVMGEGPERGVV  151 (316)
T ss_pred             CceEEEEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHh---CCEeeCCCCHHHEEEcCCCCccceE
Confidence            3679999999975 6777664321  11368899999999999999999999   79999999999999998    8999


Q ss_pred             eEccCCcccccccccc----ccccccCccccCCCC
Q 028629          173 KISSYNLPLLAENAEK----VGHVTPYSGSINPTN  203 (206)
Q Consensus       173 kl~df~~a~~~~~~~~----~~~~~~~~~y~aPE~  203 (206)
                      +|+|||++........    .....++..|+|||.
T Consensus       152 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  186 (316)
T cd07842         152 KIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPEL  186 (316)
T ss_pred             EECCCccccccCCCcccccccCCccccccccCHHH
Confidence            9999999987644322    223466788999995

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.94  E-value=1.3e-26  Score=180.37  Aligned_cols=166  Identities=17%  Similarity=0.345  Sum_probs=140.2

Q ss_pred             CcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEE
Q 028629           26 FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      |.....||+|++|.||++... ++..|++|.+..........+.+|+..++.++|+|++++++.+..       .+..++
T Consensus        22 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-------~~~~~l   94 (292)
T cd06657          22 LDNFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLV-------GDELWV   94 (292)
T ss_pred             hhhHHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEe-------CCEEEE
Confidence            344567999999999999975 789999999865555556678899999999999999999998865       568999


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      ++||+++++|.+++...    .+++..+..++.|++.++.|||+   .+++|+||+|+||++++++.++|+|||++....
T Consensus        95 v~e~~~~~~L~~~~~~~----~~~~~~~~~~~~ql~~~l~~lH~---~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~  167 (292)
T cd06657          95 VMEFLEGGALTDIVTHT----RMNEEQIAAVCLAVLKALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVS  167 (292)
T ss_pred             EEecCCCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEECCCCCEEEcccccceecc
Confidence            99999999999887543    47889999999999999999999   799999999999999999999999999987654


Q ss_pred             ccc-cccccccCccccCCCCCC
Q 028629          185 NAE-KVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       185 ~~~-~~~~~~~~~~y~aPE~~~  205 (206)
                      ... ......++.+|+|||+..
T Consensus       168 ~~~~~~~~~~~~~~y~~pE~~~  189 (292)
T cd06657         168 KEVPRRKSLVGTPYWMAPELIS  189 (292)
T ss_pred             cccccccccccCccccCHHHhc
Confidence            322 233456788899999753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.94  E-value=1.7e-26  Score=178.44  Aligned_cols=173  Identities=19%  Similarity=0.302  Sum_probs=140.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEeC-----CcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKN-----GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~-----~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      .++|...+.||+|+||.||+|....     +..|++|.+.... ......+.+|+..+++++|+|++++++++..     
T Consensus         5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~-----   79 (280)
T cd05043           5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIE-----   79 (280)
T ss_pred             hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec-----
Confidence            5679999999999999999999764     6788999886432 3335668889999999999999999998764     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCC-----cccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAW-----QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV  171 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~  171 (206)
                       .+...+++++++++++|.+++......     ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.
T Consensus        80 -~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~---~~i~H~di~p~nil~~~~~~  155 (280)
T cd05043          80 -DGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHK---RGVIHKDIAARNCVIDEELQ  155 (280)
T ss_pred             -CCCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccCHhhEEEcCCCc
Confidence             135678999999999999998654221     458899999999999999999999   79999999999999999999


Q ss_pred             eeEccCCcccccccccc---ccccccCccccCCCCC
Q 028629          172 AKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  204 (206)
Q Consensus       172 ~kl~df~~a~~~~~~~~---~~~~~~~~~y~aPE~~  204 (206)
                      ++|+|||+++.......   .....++..|+|||+.
T Consensus       156 ~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~  191 (280)
T cd05043         156 VKITDNALSRDLFPMDYHCLGDNENRPVKWMALESL  191 (280)
T ss_pred             EEECCCCCcccccCCceEEeCCCCCcchhccCHHHH
Confidence            99999999986543221   1123445679999964

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.94  E-value=2.3e-26  Score=178.32  Aligned_cols=166  Identities=17%  Similarity=0.336  Sum_probs=141.1

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEE
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~  103 (206)
                      .|...+.||+|++|.||++... ++..+++|.+........+.+.+|+.+++.+.|+|++++++.+..       .+..+
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~-------~~~~~   92 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLV-------GDELW   92 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEc-------CCeEE
Confidence            4666789999999999999965 788999999875544455678899999999999999999998764       56789


Q ss_pred             EEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccc
Q 028629          104 LIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  183 (206)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~  183 (206)
                      +++||+++++|.+++...    .+++..+..++.|++.|+.+||+   .+++|+||+|+||++++++.++++|||.+...
T Consensus        93 ~v~e~~~~~~L~~~~~~~----~~~~~~~~~~~~ql~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~  165 (285)
T cd06648          93 VVMEFLEGGALTDIVTHT----RMNEEQIATVCLAVLKALSFLHA---QGVIHRDIKSDSILLTSDGRVKLSDFGFCAQV  165 (285)
T ss_pred             EEEeccCCCCHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCChhhEEEcCCCcEEEcccccchhh
Confidence            999999999999988762    47889999999999999999999   79999999999999999999999999988755


Q ss_pred             cccc-cccccccCccccCCCCC
Q 028629          184 ENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       184 ~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      .... ......++..|+|||..
T Consensus       166 ~~~~~~~~~~~~~~~y~aPE~~  187 (285)
T cd06648         166 SKEVPRRKSLVGTPYWMAPEVI  187 (285)
T ss_pred             ccCCcccccccCCccccCHHHh
Confidence            4322 22334678899999974

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.94  E-value=1.5e-26  Score=183.27  Aligned_cols=172  Identities=12%  Similarity=0.226  Sum_probs=141.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ..+|+..+.||.|++|.||+|... ++..|++|.+....  ......+.+|+.+++.++|+||+++++++....   ...
T Consensus         4 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~---~~~   80 (334)
T cd07855           4 GSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPG---ADF   80 (334)
T ss_pred             hhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccC---CCC
Confidence            468999999999999999999965 79999999987542  234567788999999999999999998765411   234


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...++++||+. ++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||+
T Consensus        81 ~~~~lv~e~~~-~~l~~~~~~~---~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~dfg~  153 (334)
T cd07855          81 KDVYVVMDLME-SDLHHIIHSD---QPLTEEHIRYFLYQLLRGLKYIHS---ANVIHRDLKPSNLLVNEDCELRIGDFGM  153 (334)
T ss_pred             ceEEEEEehhh-hhHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCcEEeccccc
Confidence            57899999996 5898888655   458999999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccc-----cccccCccccCCCCC
Q 028629          180 PLLAENAEKV-----GHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~-----~~~~~~~~y~aPE~~  204 (206)
                      +.........     ....++..|+|||..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~  183 (334)
T cd07855         154 ARGLSSSPTEHKYFMTEYVATRWYRAPELL  183 (334)
T ss_pred             ceeecccCcCCCcccccccccccccChHHh
Confidence            9765432211     224677889999963

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.94  E-value=1.8e-26  Score=182.87  Aligned_cols=172  Identities=19%  Similarity=0.330  Sum_probs=140.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC-CCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|...+.||+|++|.||+|... ++..||+|.+... .......+.+|+.++++++|+|++++++++....+  ....
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~--~~~~   81 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSF--ESFN   81 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccc--cccc
Confidence            578999999999999999999965 7899999998642 23345667889999999999999999987654222  1134


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..++++|++.+ ++.+.+..    ..+++..++.++.|++.||.+||+   .+++|+||+|+||++++++.++|+|||++
T Consensus        82 ~~~lv~e~~~~-~l~~~~~~----~~l~~~~~~~i~~ql~~aL~~LH~---~~ivH~dlkp~Nill~~~~~~kl~dfg~~  153 (336)
T cd07849          82 DVYIVQELMET-DLYKLIKT----QHLSNDHIQYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTNCDLKICDFGLA  153 (336)
T ss_pred             eEEEEehhccc-CHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEECCCCCEEECcccce
Confidence            68999999965 88777754    358899999999999999999999   79999999999999999999999999999


Q ss_pred             cccccccc----ccccccCccccCCCCC
Q 028629          181 LLAENAEK----VGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~~----~~~~~~~~~y~aPE~~  204 (206)
                      ........    .....++..|+|||..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~  181 (336)
T cd07849         154 RIADPEHDHTGFLTEYVATRWYRAPEIM  181 (336)
T ss_pred             eeccccccccCCcCCcCcCCCccChHHh
Confidence            76543321    1224677889999963

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.94  E-value=2.8e-26  Score=177.24  Aligned_cols=171  Identities=20%  Similarity=0.356  Sum_probs=140.7

Q ss_pred             cCCcccceeccCcceeEEEEEEe-----CCcEEEEEEeecCCCc-cHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-----NGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-----~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .+|...+.||+|+||.||++.+.     ++..+|+|.+...... ..+.+.+|++.++.+.|+|++++.+++..     .
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~-----~   78 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEK-----P   78 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeec-----C
Confidence            45788899999999999999853     3678999999755443 46688999999999999999999987743     2


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      .....++++||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+||
T Consensus        79 ~~~~~~lv~e~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl~p~nil~~~~~~~~l~df  153 (284)
T cd05038          79 GGRSLRLIMEYLPSGSLRDYLQRHR--DQINLKRLLLFSSQICKGMDYLGS---QRYIHRDLAARNILVESEDLVKISDF  153 (284)
T ss_pred             CCCceEEEEecCCCCCHHHHHHhCc--cccCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHhEEEcCCCCEEEccc
Confidence            2457899999999999999997653  258899999999999999999999   79999999999999999999999999


Q ss_pred             Cccccccccccc----cccccCccccCCCCC
Q 028629          178 NLPLLAENAEKV----GHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~----~~~~~~~~y~aPE~~  204 (206)
                      |.+.........    ....++..|+|||..
T Consensus       154 g~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~  184 (284)
T cd05038         154 GLAKVLPEDKDYYYVKEPGESPIFWYAPECL  184 (284)
T ss_pred             ccccccccCCcceeccCCCCCcccccCcHHH
Confidence            999877532211    112344569999964

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.94  E-value=4e-27  Score=202.13  Aligned_cols=172  Identities=23%  Similarity=0.426  Sum_probs=141.3

Q ss_pred             hcCCcccceeccCcceeEEEEEEe--CCc----EEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK--NGT----FIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~--~~~----~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      ..+....+.||+|+||.||.|...  .+.    .||+|.+.... .....+|++|..+|++++||||+++.|+|++    
T Consensus       691 ~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~----  766 (1025)
T KOG1095|consen  691 RKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLD----  766 (1025)
T ss_pred             hhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecC----
Confidence            345677888999999999999965  343    48899886543 4556789999999999999999999999987    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCC----CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHA----WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV  171 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~  171 (206)
                         ....+|++||+++|+|..++++...    ...++...++.++.|||+|+.||++   .+++||||..+|+|+++...
T Consensus       767 ---~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~---~~fvHRDLAaRNCLL~~~r~  840 (1025)
T KOG1095|consen  767 ---SGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLES---KHFVHRDLAARNCLLDERRV  840 (1025)
T ss_pred             ---CCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHh---CCCcCcchhhhheeecccCc
Confidence               5678999999999999999987511    2568899999999999999999999   89999999999999999999


Q ss_pred             eeEccCCccccc-cccc-ccccc-ccCccccCCCCC
Q 028629          172 AKISSYNLPLLA-ENAE-KVGHV-TPYSGSINPTNS  204 (206)
Q Consensus       172 ~kl~df~~a~~~-~~~~-~~~~~-~~~~~y~aPE~~  204 (206)
                      +||+|||+|+-+ +... ..... .-...+||||..
T Consensus       841 VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl  876 (1025)
T KOG1095|consen  841 VKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESL  876 (1025)
T ss_pred             EEEcccchhHhhhhchheeccCccccceecCCHHHH
Confidence            999999999933 3221 22111 333469999975

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.94  E-value=2e-26  Score=175.73  Aligned_cols=163  Identities=21%  Similarity=0.368  Sum_probs=135.8

Q ss_pred             ceeccCcceeEEEEEEe--CC--cEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEE
Q 028629           30 AFMGEGSKGQMYRGRLK--NG--TFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~--~~--~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +.||+|++|.||+|.+.  ++  ..+++|.+..... ...+.+.+|+..+++++|+|++++++.+..        ...++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--------~~~~~   72 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT--------HPLMM   72 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC--------CeEEE
Confidence            46899999999999964  23  3689999976655 556788999999999999999999987743        56899


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      ++|++++++|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++....
T Consensus        73 v~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~  148 (257)
T cd05040          73 VTELAPLGSLLDRLRKDAL-GHFLISTLCDYAVQIANGMRYLES---KRFIHRDLAARNILLASDDKVKIGDFGLMRALP  148 (257)
T ss_pred             EEEecCCCcHHHHHHhccc-ccCcHHHHHHHHHHHHHHHHHHHh---CCccccccCcccEEEecCCEEEecccccccccc
Confidence            9999999999999977542 358999999999999999999999   799999999999999999999999999998765


Q ss_pred             cccc----ccccccCccccCCCCC
Q 028629          185 NAEK----VGHVTPYSGSINPTNS  204 (206)
Q Consensus       185 ~~~~----~~~~~~~~~y~aPE~~  204 (206)
                      ....    .....++..|+|||+.
T Consensus       149 ~~~~~~~~~~~~~~~~~y~~pE~~  172 (257)
T cd05040         149 QNEDHYVMEEHLKVPFAWCAPESL  172 (257)
T ss_pred             ccccceecccCCCCCceecCHHHh
Confidence            4221    1123456789999964

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.94  E-value=4e-27  Score=180.01  Aligned_cols=160  Identities=19%  Similarity=0.325  Sum_probs=132.0

Q ss_pred             ceeccCcceeEEEEEEe-C-------CcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           30 AFMGEGSKGQMYRGRLK-N-------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~-------~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +.||.|+||.||+|... .       ...+++|.+........+.+.+|..+++.++|+|++++++++..       ...
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~-------~~~   73 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVC-------GDE   73 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEe-------CCC
Confidence            46899999999999864 2       23478888765545556678889999999999999999998865       456


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc--------ee
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV--------AK  173 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~--------~k  173 (206)
                      .+++|||+++++|.+++....  ..+++..+..++.|++.||.|||+   .+++|+||||+||++++++.        ++
T Consensus        74 ~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~iiH~dlkp~nili~~~~~~~~~~~~~~~  148 (258)
T cd05078          74 SIMVQEYVKFGSLDTYLKKNK--NLINISWKLEVAKQLAWALHFLED---KGLTHGNVCAKNVLLIREEDRKTGNPPFIK  148 (258)
T ss_pred             cEEEEecCCCCcHHHHHhcCC--CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCccceEEEecccccccCCCceEE
Confidence            899999999999999987653  357899999999999999999999   89999999999999987654        69


Q ss_pred             EccCCccccccccccccccccCccccCCCCC
Q 028629          174 ISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       174 l~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ++|||++......   ....++..|+|||..
T Consensus       149 l~d~g~~~~~~~~---~~~~~~~~y~aPE~~  176 (258)
T cd05078         149 LSDPGISITVLPK---EILLERIPWVPPECI  176 (258)
T ss_pred             ecccccccccCCc---hhccccCCccCchhc
Confidence            9999998765432   234677889999964

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.94  E-value=3.1e-26  Score=177.53  Aligned_cols=171  Identities=18%  Similarity=0.374  Sum_probs=146.7

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ...++|...+.+|+|++|.||++... ++..+++|++..... ..+.+.+|++.++.++|+|++++++.+..       .
T Consensus        16 ~~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~   87 (286)
T cd06614          16 DPRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYYDSYLV-------G   87 (286)
T ss_pred             CccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHHHHCCCCCeeEEEEEEEE-------C
Confidence            45678999999999999999999976 788999999975543 55678899999999999999999998865       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...++++||+++++|.+++....  ..+++..++.++.|++.+|.+||+   .+++|+||+|+||++++++.++|+|||+
T Consensus        88 ~~~~lv~e~~~~~~L~~~l~~~~--~~l~~~~~~~i~~~i~~~L~~lH~---~gi~H~dl~p~ni~i~~~~~~~l~d~~~  162 (286)
T cd06614          88 DELWVVMEYMDGGSLTDIITQNF--VRMNEPQIAYVCREVLQGLEYLHS---QNVIHRDIKSDNILLSKDGSVKLADFGF  162 (286)
T ss_pred             CEEEEEEeccCCCcHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCChhhEEEcCCCCEEECccch
Confidence            68999999999999999998753  268999999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccc-cccccccCccccCCCCC
Q 028629          180 PLLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      +....... ......++..|++||..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~y~~PE~~  188 (286)
T cd06614         163 AAQLTKEKSKRNSVVGTPYWMAPEVI  188 (286)
T ss_pred             hhhhccchhhhccccCCcccCCHhHh
Confidence            87654332 22234567789999964

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.94  E-value=2.4e-26  Score=180.03  Aligned_cols=166  Identities=17%  Similarity=0.291  Sum_probs=139.7

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC---ccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ...|...+.||+|++|.||++... +++.|++|.+.....   ...+.+.+|+++++.++|+|++++.+++..       
T Consensus        14 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~-------   86 (307)
T cd06607          14 EKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLR-------   86 (307)
T ss_pred             chhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEe-------
Confidence            466999999999999999999975 789999998864322   233568899999999999999999998875       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+..++++||+.+ ++.+.+....  ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||
T Consensus        87 ~~~~~lv~e~~~g-~l~~~~~~~~--~~l~~~~~~~~~~ql~~~L~~LH~---~~i~H~dl~p~nIl~~~~~~~kL~dfg  160 (307)
T cd06607          87 EHTAWLVMEYCLG-SASDILEVHK--KPLQEVEIAAICHGALQGLAYLHS---HERIHRDIKAGNILLTEPGTVKLADFG  160 (307)
T ss_pred             CCeEEEEHHhhCC-CHHHHHHHcc--cCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcccEEECCCCCEEEeecC
Confidence            5678999999975 7777665432  458999999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccccccccccCccccCCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ++......   ....++..|+|||..
T Consensus       161 ~~~~~~~~---~~~~~~~~y~aPE~~  183 (307)
T cd06607         161 SASLVSPA---NSFVGTPYWMAPEVI  183 (307)
T ss_pred             cceecCCC---CCccCCccccCceee
Confidence            99766543   234677889999964

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.94  E-value=1.7e-26  Score=177.96  Aligned_cols=168  Identities=20%  Similarity=0.356  Sum_probs=142.8

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccC-CCceeeeccccccccccCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ++|...+.||.|++|.||++... ++..|++|++....   ....+.+..|.++++++. |+||+++++.+..       
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~-------   73 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQD-------   73 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcC-------
Confidence            47899999999999999999976 79999999987532   223456788999999998 9999999998754       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+..+++||++++++|.+++...   ..+++..++.++.|++.||.+||+   .+++|+||+|+||++++++.++++|||
T Consensus        74 ~~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~i~~ql~~~l~~Lh~---~~~~H~dl~~~ni~i~~~~~~~l~df~  147 (280)
T cd05581          74 EENLYFVLEYAPNGELLQYIRKY---GSLDEKCTRFYAAEILLALEYLHS---KGIIHRDLKPENILLDKDMHIKITDFG  147 (280)
T ss_pred             CceEEEEEcCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHeEECCCCCEEecCCc
Confidence            56899999999999999999875   368999999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccc---------------------cccccccCccccCCCCC
Q 028629          179 LPLLAENAE---------------------KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~---------------------~~~~~~~~~~y~aPE~~  204 (206)
                      ++.......                     ......++..|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~  194 (280)
T cd05581         148 TAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELL  194 (280)
T ss_pred             cccccCCccccccCCCCCccccccccccccccccccCCccccCHHHh
Confidence            998654322                     22234567789999964

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.94  E-value=1.8e-26  Score=181.23  Aligned_cols=173  Identities=21%  Similarity=0.412  Sum_probs=138.7

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe--------CCcEEEEEEeecCC-CccHHHHHHHHHHHhcc-CCCceeeecccccc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK--------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFE   91 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~--------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~   91 (206)
                      ...+|...+.||+|++|.||++...        ....+++|.+.... ......+.+|+.+++++ +|+||+++++++..
T Consensus        10 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~   89 (314)
T cd05099          10 PRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQ   89 (314)
T ss_pred             cHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEcc
Confidence            4567899999999999999999742        24568999887432 33345788899999999 69999999998864


Q ss_pred             ccccCCCCceEEEEEeecCCCCHHHHHhcCCC-------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccC
Q 028629           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA-------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNN  158 (206)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~d  158 (206)
                             ....++++||+++++|.+++.....             ...+++..+..++.|++.||.|||+   .+++|+|
T Consensus        90 -------~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~---~gi~H~d  159 (314)
T cd05099          90 -------EGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLES---RRCIHRD  159 (314)
T ss_pred             -------CCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHH---CCeeecc
Confidence                   4578999999999999999865321             1358889999999999999999999   7999999


Q ss_pred             CccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCCC
Q 028629          159 LKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       159 l~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      |+|+||++++++.++|+|||+++......   ......++..|+|||..
T Consensus       160 lkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  208 (314)
T cd05099         160 LAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEAL  208 (314)
T ss_pred             ccceeEEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHH
Confidence            99999999999999999999998654321   11122334579999963

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.94  E-value=2.9e-26  Score=175.37  Aligned_cols=164  Identities=20%  Similarity=0.353  Sum_probs=130.7

Q ss_pred             ceeccCcceeEEEEEEe----CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEE
Q 028629           30 AFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~----~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +.||+|+||.||+|...    +...+|+|.+.... ....+.+.+|+.+++.++|+|++++++++..      .++..++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------~~~~~~l   74 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLP------SEGSPLV   74 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeec------CCCCcEE
Confidence            46899999999999853    24578999885332 3345678889999999999999999987653      1345789


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      ++||+.+++|.+++....  ...++..+..++.|++.|+.|||+   .+++|+||+|+||++++++.++|+|||+++...
T Consensus        75 v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~  149 (262)
T cd05058          75 VLPYMKHGDLRNFIRSET--HNPTVKDLIGFGLQVAKGMEYLAS---KKFVHRDLAARNCMLDESFTVKVADFGLARDIY  149 (262)
T ss_pred             EEecCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHh---CCccccccCcceEEEcCCCcEEECCcccccccc
Confidence            999999999999987643  235677888899999999999999   799999999999999999999999999997554


Q ss_pred             ccc-----cccccccCccccCCCCC
Q 028629          185 NAE-----KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       185 ~~~-----~~~~~~~~~~y~aPE~~  204 (206)
                      ...     ......++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~~~y~aPE~~  174 (262)
T cd05058         150 DKEYYSVHNHTGAKLPVKWMALESL  174 (262)
T ss_pred             CCcceeecccccCcCCccccChhHh
Confidence            321     11123456679999964

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.94  E-value=3.8e-26  Score=173.66  Aligned_cols=163  Identities=23%  Similarity=0.434  Sum_probs=135.3

Q ss_pred             ceeccCcceeEEEEEEeCCcEEEEEEeecCCCc-cHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEEEee
Q 028629           30 AFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEY  108 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e~  108 (206)
                      +.||.|++|.||++...+++.|++|.+...... ....+.+|++++++++|+||+++++++..       ....++++|+
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~~~~v~e~   73 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQ-------KQPIYIVMEL   73 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEec-------CCCeEEEEEc
Confidence            468999999999999766899999988755433 45678899999999999999999998765       5678999999


Q ss_pred             cCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccccccc
Q 028629          109 VPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK  188 (206)
Q Consensus       109 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~~  188 (206)
                      +++++|.+++....  ..+++..+..++.+++.++.|||+   .+++|+||+|+||+++.++.++|+|||++........
T Consensus        74 ~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~l~~lH~---~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~  148 (251)
T cd05041          74 VPGGSLLTFLRKKK--NRLTVKKLLQMSLDAAAGMEYLES---KNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIY  148 (251)
T ss_pred             CCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHh---CCEehhhcCcceEEEcCCCcEEEeeccccccccCCcc
Confidence            99999999986543  357899999999999999999999   7999999999999999999999999999986653211


Q ss_pred             c---cccccCccccCCCCC
Q 028629          189 V---GHVTPYSGSINPTNS  204 (206)
Q Consensus       189 ~---~~~~~~~~y~aPE~~  204 (206)
                      .   .....+..|+|||..
T Consensus       149 ~~~~~~~~~~~~y~~PE~~  167 (251)
T cd05041         149 TVSDGLKQIPIKWTAPEAL  167 (251)
T ss_pred             eeccccCcceeccCChHhh
Confidence            1   112334569999964

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.94  E-value=3.8e-26  Score=178.23  Aligned_cols=177  Identities=20%  Similarity=0.348  Sum_probs=141.5

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeecccccccc----
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECY----   93 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----   93 (206)
                      ...++|+..+.||+|++|.||+|... +++.|++|.+....  ......+.+|+++++.++|+|++++++++....    
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~   83 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD   83 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence            45678999999999999999999976 68899999997542  233456778999999999999999999875421    


Q ss_pred             ccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCcee
Q 028629           94 FDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAK  173 (206)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~k  173 (206)
                      +. .....+++++||+++ ++...+....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++
T Consensus        84 ~~-~~~~~~~lv~e~~~~-~l~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~---~~i~H~dl~p~nili~~~~~~k  156 (302)
T cd07864          84 FK-KDKGAFYLVFEYMDH-DLMGLLESGL--VHFSEDHIKSFMKQLLEGLNYCHK---KNFLHRDIKCSNILLNNKGQIK  156 (302)
T ss_pred             cc-ccCCcEEEEEcccCc-cHHHHHhcCC--CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCcEE
Confidence            00 112378999999976 7777665532  458999999999999999999999   7999999999999999999999


Q ss_pred             EccCCcccccccccc--ccccccCccccCCCCC
Q 028629          174 ISSYNLPLLAENAEK--VGHVTPYSGSINPTNS  204 (206)
Q Consensus       174 l~df~~a~~~~~~~~--~~~~~~~~~y~aPE~~  204 (206)
                      |+|||++........  .....++..|+|||..
T Consensus       157 l~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~  189 (302)
T cd07864         157 LADFGLARLYNSEESRPYTNKVITLWYRPPELL  189 (302)
T ss_pred             eCcccccccccCCcccccccceeccCccChHHh
Confidence            999999987654321  1123456679999964

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.94  E-value=3e-26  Score=176.17  Aligned_cols=165  Identities=19%  Similarity=0.331  Sum_probs=130.4

Q ss_pred             ceeccCcceeEEEEEEeCC---cEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEE
Q 028629           30 AFMGEGSKGQMYRGRLKNG---TFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI  105 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~~~---~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (206)
                      +.||+|+||.||++...++   ..+++|.+.... ....+.+.+|+..++.++|+|++++++.+..       ....+++
T Consensus         1 ~~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~-------~~~~~lv   73 (268)
T cd05086           1 QEIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVE-------AIPYLLV   73 (268)
T ss_pred             CcCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecC-------CCccEEE
Confidence            3589999999999985433   345667665433 3345678999999999999999999998865       4568999


Q ss_pred             EeecCCCCHHHHHhcCCC-CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          106 FEYVPNGTLRSWISEGHA-WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       106 ~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      |||+++++|.+++..... ....+...++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++....
T Consensus        74 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~---~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~  150 (268)
T cd05086          74 FEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHK---HNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRY  150 (268)
T ss_pred             EecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHH---CCeeccCCccceEEEcCCccEEecccccccccC
Confidence            999999999999875321 1346677888999999999999999   799999999999999999999999999986432


Q ss_pred             cc---ccccccccCccccCCCCC
Q 028629          185 NA---EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       185 ~~---~~~~~~~~~~~y~aPE~~  204 (206)
                      ..   .......++..|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~~y~aPE~~  173 (268)
T cd05086         151 KEDYIETEDDKCVPLRWLAPELV  173 (268)
T ss_pred             cchhhhcccCCcCcccccCchhc
Confidence            11   112234567789999974

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.94  E-value=4.3e-26  Score=176.38  Aligned_cols=167  Identities=23%  Similarity=0.383  Sum_probs=139.4

Q ss_pred             CcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           26 FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      |...+.||.|++|.||+|... ++..+++|.+....  ......+.+|+++++.++|+|++++.+++...     ..+..
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-----~~~~~   75 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSK-----GKGSI   75 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecC-----CCCcE
Confidence            567889999999999999976 68899999997653  34456788899999999999999999988651     12679


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      ++++||+++ +|.+++....  ..+++..++.++.|++.||.+||+   .+++|+||+|+||++++++.++|+|||.+..
T Consensus        76 ~lv~e~~~~-~l~~~~~~~~--~~~~~~~~~~i~~~i~~al~~LH~---~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~  149 (287)
T cd07840          76 YMVFEYMDH-DLTGLLDSPE--VKFTESQIKCYMKQLLEGLQYLHS---NGILHRDIKGSNILINNDGVLKLADFGLARP  149 (287)
T ss_pred             EEEeccccc-cHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCcHHHeEEcCCCCEEEccccceee
Confidence            999999975 8888886543  358899999999999999999999   7999999999999999999999999999987


Q ss_pred             ccccc--cccccccCccccCCCC
Q 028629          183 AENAE--KVGHVTPYSGSINPTN  203 (206)
Q Consensus       183 ~~~~~--~~~~~~~~~~y~aPE~  203 (206)
                      .....  ......++..|+|||.
T Consensus       150 ~~~~~~~~~~~~~~~~~y~~PE~  172 (287)
T cd07840         150 YTKRNSADYTNRVITLWYRPPEL  172 (287)
T ss_pred             ccCCCcccccccccccccCCcee
Confidence            65543  1222355678999995

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.94  E-value=2.8e-26  Score=174.78  Aligned_cols=169  Identities=20%  Similarity=0.356  Sum_probs=141.7

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +|...+.||.|++|.||++... +|..+++|.+....  ....+.+.+|+++++.++|+|++++++.+..       ...
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~-------~~~   73 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQE-------NGR   73 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheecc-------CCe
Confidence            5788999999999999999976 68899999986542  2344567889999999999999999998765       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC-ceeEccCCcc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-VAKISSYNLP  180 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~-~~kl~df~~a  180 (206)
                      .++++||+++++|.+++..... ..+++..+..++.|++.|+.|||+   .+++|+||+|+||++++++ .++|+|||.+
T Consensus        74 ~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~---~~i~H~dl~~~nil~~~~~~~~~l~d~~~~  149 (257)
T cd08225          74 LFIVMEYCDGGDLMKRINRQRG-VLFSEDQILSWFVQISLGLKHIHD---RKILHRDIKSQNIFLSKNGMVAKLGDFGIA  149 (257)
T ss_pred             EEEEEecCCCCcHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEEcCCCCeEEecccccc
Confidence            9999999999999999876433 357899999999999999999999   7999999999999999875 5699999999


Q ss_pred             ccccccc-cccccccCccccCCCCC
Q 028629          181 LLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ....+.. ......++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~ape~~  174 (257)
T cd08225         150 RQLNDSMELAYTCVGTPYYLSPEIC  174 (257)
T ss_pred             hhccCCcccccccCCCccccCHHHH
Confidence            8765432 22334677889999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.94  E-value=4.1e-26  Score=174.21  Aligned_cols=161  Identities=19%  Similarity=0.298  Sum_probs=132.1

Q ss_pred             ceeccCcceeEEEEEEe-C---CcEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEE
Q 028629           30 AFMGEGSKGQMYRGRLK-N---GTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~---~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +.||+|+||.||+|... .   +..+++|.+..... ...+.+.+|+.+++.++|+|++++++++.        ....++
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~--------~~~~~~   72 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCK--------GEPLML   72 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEc--------CCceEE
Confidence            46899999999999854 2   26899999875543 34567889999999999999999998764        245799


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      ++||+++++|.+++...   ..+++..++.++.|++.++.+||+   .+++|+||+|+||+++.++.++|+|||++....
T Consensus        73 v~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lh~---~~i~H~di~p~nili~~~~~~kl~df~~~~~~~  146 (257)
T cd05060          73 VMELAPLGPLLKYLKKR---REIPVSDLKELAHQVAMGMAYLES---KHFVHRDLAARNVLLVNRHQAKISDFGMSRALG  146 (257)
T ss_pred             EEEeCCCCcHHHHHHhC---CCCCHHHHHHHHHHHHHHHHHHhh---cCeeccCcccceEEEcCCCcEEeccccccceee
Confidence            99999999999999875   358899999999999999999999   799999999999999999999999999998664


Q ss_pred             cccccc----ccccCccccCCCCC
Q 028629          185 NAEKVG----HVTPYSGSINPTNS  204 (206)
Q Consensus       185 ~~~~~~----~~~~~~~y~aPE~~  204 (206)
                      ......    ...++..|+|||..
T Consensus       147 ~~~~~~~~~~~~~~~~~y~aPE~~  170 (257)
T cd05060         147 AGSDYYRATTAGRWPLKWYAPECI  170 (257)
T ss_pred             cCCcccccccCccccccccCHHHh
Confidence            433211    11223469999964

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.94  E-value=2.4e-26  Score=179.11  Aligned_cols=171  Identities=18%  Similarity=0.356  Sum_probs=137.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-----------------CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceee
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-----------------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVS   84 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-----------------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~   84 (206)
                      .++|+..+.||+|+||.||++...                 ++..+|+|.+.... ......+.+|+.+++.++|+||++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~   83 (296)
T cd05095           4 RKRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIR   83 (296)
T ss_pred             hhhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcce
Confidence            467999999999999999998532                 23468999887543 233467889999999999999999


Q ss_pred             eccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCC--------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceec
Q 028629           85 ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA--------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFS  156 (206)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h  156 (206)
                      +++++..       ....++++||+++++|.+++.....        ...+++..++.++.|++.|+.|||+   .+++|
T Consensus        84 ~~~~~~~-------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~---~~i~H  153 (296)
T cd05095          84 LLAVCIT-------SDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSS---LNFVH  153 (296)
T ss_pred             EEEEEec-------CCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHH---CCeec
Confidence            9998865       4568999999999999999865321        1246778899999999999999999   79999


Q ss_pred             cCCccccEEecCCCceeEccCCcccccccccc---ccccccCccccCCCC
Q 028629          157 NNLKITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTN  203 (206)
Q Consensus       157 ~dl~p~nil~~~~~~~kl~df~~a~~~~~~~~---~~~~~~~~~y~aPE~  203 (206)
                      +||||+||++++++.++|+|||++........   ......+..|++||.
T Consensus       154 ~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~  203 (296)
T cd05095         154 RDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWES  203 (296)
T ss_pred             ccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHH
Confidence            99999999999999999999999986543221   112233467899984

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.94  E-value=2.1e-26  Score=175.98  Aligned_cols=160  Identities=19%  Similarity=0.333  Sum_probs=135.6

Q ss_pred             eccCcceeEEEEEEe-CCcEEEEEEeecCCC---ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEEEe
Q 028629           32 MGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE  107 (206)
Q Consensus        32 lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e  107 (206)
                      ||.|++|.||++... +++.+++|.+.....   .....+.+|+++++++.|+|++++++.+..       ....++++|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-------~~~~~lv~e   73 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQG-------KKNLYLVME   73 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheec-------CcEEEEEEe
Confidence            588999999999987 699999999865432   345678889999999999999999887754       667999999


Q ss_pred             ecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccccc
Q 028629          108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE  187 (206)
Q Consensus       108 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~  187 (206)
                      ++++++|.+++...   ..+++..++.++.|++.||.+||+   .+++|+||+|+||++++++.++|+|||++.......
T Consensus        74 ~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~L~~lH~---~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~  147 (265)
T cd05579          74 YLPGGDLASLLENV---GSLDEDVARIYIAEIVLALEYLHS---NGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRR  147 (265)
T ss_pred             cCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---cCeecCCCCHHHeEEcCCCCEEEEecccchhcccCc
Confidence            99999999998765   358999999999999999999999   799999999999999999999999999987654331


Q ss_pred             ---------cccccccCccccCCCCC
Q 028629          188 ---------KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       188 ---------~~~~~~~~~~y~aPE~~  204 (206)
                               ......++..|++||..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~Pe~~  173 (265)
T cd05579         148 QINLNDDEKEDKRIVGTPDYIAPEVI  173 (265)
T ss_pred             ccccccccccccCcccCccccCHHHh
Confidence                     22334667789999964

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.94  E-value=4.8e-26  Score=176.12  Aligned_cols=160  Identities=19%  Similarity=0.265  Sum_probs=128.6

Q ss_pred             eeccCcceeEEEEEEe-CCcEEEEEEeecCCC---ccHHHHHHHHHHHh---ccCCCceeeeccccccccccCCCCceEE
Q 028629           31 FMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIELIS---KLRHCHLVSALGHCFECYFDDSSVSRIF  103 (206)
Q Consensus        31 ~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~---~l~h~~i~~~~~~~~~~~~~~~~~~~~~  103 (206)
                      .||+|+||.||++... ++..+|+|.+.....   .......+|...++   ...|++++.+.+.+..       .+..+
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~   73 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHT-------PDKLC   73 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEec-------CCeEE
Confidence            3799999999999975 689999998865431   11223344443333   3479999999887754       56789


Q ss_pred             EEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccc
Q 028629          104 LIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  183 (206)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~  183 (206)
                      ++|||+++++|.+++...   ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++++|||++...
T Consensus        74 lv~e~~~~~~L~~~i~~~---~~l~~~~~~~i~~qi~~al~~lH~---~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~  147 (279)
T cd05633          74 FILDLMNGGDLHYHLSQH---GVFSEKEMRFYATEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDF  147 (279)
T ss_pred             EEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcCCCCCCHHHEEECCCCCEEEccCCcceec
Confidence            999999999999988765   458999999999999999999999   79999999999999999999999999999765


Q ss_pred             cccccccccccCccccCCCCC
Q 028629          184 ENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       184 ~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      .... .....++..|+|||..
T Consensus       148 ~~~~-~~~~~~~~~y~aPE~~  167 (279)
T cd05633         148 SKKK-PHASVGTHGYMAPEVL  167 (279)
T ss_pred             cccC-ccCcCCCcCccCHHHh
Confidence            4332 2335688899999964

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.94  E-value=2.1e-26  Score=180.02  Aligned_cols=169  Identities=21%  Similarity=0.383  Sum_probs=136.3

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCc----EEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGT----FIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~----~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      .++|+..+.||+|+||.||++... ++.    .+++|.+..... .....+.+|+.+++.++|+||+++++++..     
T Consensus         6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~-----   80 (303)
T cd05110           6 ETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLS-----   80 (303)
T ss_pred             hhhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcC-----
Confidence            356888999999999999999965 454    468888764432 223467889999999999999999998753     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                         ...++++|++++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.+||+|
T Consensus        81 ---~~~~~v~e~~~~g~l~~~~~~~~--~~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~dikp~Nill~~~~~~kL~D  152 (303)
T cd05110          81 ---PTIQLVTQLMPHGCLLDYVHEHK--DNIGSQLLLNWCVQIAKGMMYLEE---RRLVHRDLAARNVLVKSPNHVKITD  152 (303)
T ss_pred             ---CCceeeehhcCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHhh---cCeeccccccceeeecCCCceEEcc
Confidence               23578999999999999887643  357889999999999999999999   7999999999999999999999999


Q ss_pred             CCcccccccccc---ccccccCccccCCCCC
Q 028629          177 YNLPLLAENAEK---VGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~~~---~~~~~~~~~y~aPE~~  204 (206)
                      ||+++.......   .....++..|+|||..
T Consensus       153 fg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~  183 (303)
T cd05110         153 FGLARLLEGDEKEYNADGGKMPIKWMALECI  183 (303)
T ss_pred             ccccccccCcccccccCCCccccccCCHHHh
Confidence            999986653322   1122345679999964

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.94  E-value=3.8e-26  Score=177.65  Aligned_cols=175  Identities=19%  Similarity=0.292  Sum_probs=138.9

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccC-CCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ++|+..+.||.|++|.||+|... +++.||+|.+....  ......+.+|+.+++.+. |+|++++++.+.....  ...
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~--~~~   78 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEK--NGK   78 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCC--CCC
Confidence            46899999999999999999976 78999999886543  223457888999999995 6999999987754111  122


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCC--CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC-CCceeEcc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHA--WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-NLVAKISS  176 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~-~~~~kl~d  176 (206)
                      ...++++||+++ +|.+++.....  ...+++..++.++.|++.||.|||+   .+++|+||+|+||+++. ++.++|+|
T Consensus        79 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~---~~i~H~dl~~~nil~~~~~~~~kl~d  154 (295)
T cd07837          79 PSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHK---HGVMHRDLKPQNLLVDKQKGLLKIAD  154 (295)
T ss_pred             ceEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChHHEEEecCCCeEEEee
Confidence            348999999986 88888764321  2458999999999999999999999   79999999999999998 88999999


Q ss_pred             CCcccccccc-ccccccccCccccCCCCC
Q 028629          177 YNLPLLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      ||++...... .......++..|+|||..
T Consensus       155 fg~~~~~~~~~~~~~~~~~~~~~~aPE~~  183 (295)
T cd07837         155 LGLGRAFSIPVKSYTHEIVTLWYRAPEVL  183 (295)
T ss_pred             cccceecCCCccccCCcccccCCCChHHh
Confidence            9999865432 222233567789999964

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.94  E-value=5.3e-27  Score=189.98  Aligned_cols=168  Identities=18%  Similarity=0.413  Sum_probs=143.5

Q ss_pred             CCcccceeccCcceeEEEEEEe---CC--cEEEEEEeecC-CCccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK---NG--TFIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~---~~--~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .....+.||.|-||.||.|...   .|  ..||+|+.+.+ .....+.|+.|..+|++++||||++++|+|..       
T Consensus       390 ~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e-------  462 (974)
T KOG4257|consen  390 LITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVE-------  462 (974)
T ss_pred             hccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeec-------
Confidence            3455677999999999999953   23  36889999864 56678899999999999999999999999964       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                       ...|+|||.++-|.|+++++.+.  ..++..+...++.||+.||.|||+   .+++||||..+||||.+..-+|++|||
T Consensus       463 -~P~WivmEL~~~GELr~yLq~nk--~sL~l~tL~ly~~Qi~talaYLeS---krfVHRDIAaRNiLVsSp~CVKLaDFG  536 (974)
T KOG4257|consen  463 -QPMWIVMELAPLGELREYLQQNK--DSLPLRTLTLYCYQICTALAYLES---KRFVHRDIAARNILVSSPQCVKLADFG  536 (974)
T ss_pred             -cceeEEEecccchhHHHHHHhcc--ccchHHHHHHHHHHHHHHHHHHHh---hchhhhhhhhhheeecCcceeeecccc
Confidence             56899999999999999998765  468889999999999999999999   899999999999999999999999999


Q ss_pred             ccccccccc--cccccccCccccCCCCCC
Q 028629          179 LPLLAENAE--KVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       179 ~a~~~~~~~--~~~~~~~~~~y~aPE~~~  205 (206)
                      +++-++...  +.....-..-+||||+..
T Consensus       537 LSR~~ed~~yYkaS~~kLPIKWmaPESIN  565 (974)
T KOG4257|consen  537 LSRYLEDDAYYKASRGKLPIKWMAPESIN  565 (974)
T ss_pred             hhhhccccchhhccccccceeecCccccc
Confidence            999876543  444344445699999864

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.94  E-value=5.3e-26  Score=174.65  Aligned_cols=171  Identities=16%  Similarity=0.305  Sum_probs=139.8

Q ss_pred             CCcccceeccCcceeEEEEEEe--CCcEEEEEEeecCC----------CccHHHHHHHHHHHhc-cCCCceeeecccccc
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK--NGTFIAIRCLKMKK----------SHSTRNFMHHIELISK-LRHCHLVSALGHCFE   91 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~--~~~~vaiK~~~~~~----------~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~   91 (206)
                      +|+..+.||+|++|.||++...  ++..+++|.+....          ......+.+|+.++.+ ++|+|++++++.+..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            4788899999999999999975  37889999875321          2223456778887765 689999999998865


Q ss_pred             ccccCCCCceEEEEEeecCCCCHHHHHhcC-CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC
Q 028629           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISEG-HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL  170 (206)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~  170 (206)
                             .+..++++||+++++|.+++... .....+++..++.++.|++.+|.+||+.  .+++|+||+|+||++++++
T Consensus        81 -------~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~--~~i~H~dl~~~nil~~~~~  151 (269)
T cd08528          81 -------NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKE--KRIVHRDLTPNNIMLGEDD  151 (269)
T ss_pred             -------CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccC--CceeecCCCHHHEEECCCC
Confidence                   56899999999999999887542 1124688999999999999999999963  5899999999999999999


Q ss_pred             ceeEccCCccccccccccccccccCccccCCCCC
Q 028629          171 VAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       171 ~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      .++|+|||.+.............++..|+|||..
T Consensus       152 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~Pe~~  185 (269)
T cd08528         152 KVTITDFGLAKQKQPESKLTSVVGTILYSCPEIV  185 (269)
T ss_pred             cEEEecccceeecccccccccccCcccCcChhhh
Confidence            9999999999877655444456778889999974

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.94  E-value=6.3e-28  Score=207.72  Aligned_cols=170  Identities=19%  Similarity=0.361  Sum_probs=147.2

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .-+|..+..||.|.||.||.|... +|...|+|.+....  ....+.+.+|+.+++.++|||+++++++-++       .
T Consensus      1234 ~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvH-------R 1306 (1509)
T KOG4645|consen 1234 TFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVH-------R 1306 (1509)
T ss_pred             eeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeec-------H
Confidence            457888999999999999999965 79999999886543  3344678899999999999999999998776       6


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +..+|.||||++|+|.+.+....   ..++.....+..|++.|+.|||+   .||+||||||.||+++.+|.+|.+|||.
T Consensus      1307 ekv~IFMEyC~~GsLa~ll~~gr---i~dE~vt~vyt~qll~gla~LH~---~gIVHRDIK~aNI~Ld~~g~iK~~DFGs 1380 (1509)
T KOG4645|consen 1307 EKVYIFMEYCEGGSLASLLEHGR---IEDEMVTRVYTKQLLEGLAYLHE---HGIVHRDIKPANILLDFNGLIKYGDFGS 1380 (1509)
T ss_pred             HHHHHHHHHhccCcHHHHHHhcc---hhhhhHHHHHHHHHHHHHHHHHh---cCceecCCCccceeeecCCcEEeecccc
Confidence            77899999999999999998763   36677777788999999999999   7999999999999999999999999999


Q ss_pred             ccccccc-----ccccccccCccccCCCCCC
Q 028629          180 PLLAENA-----EKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       180 a~~~~~~-----~~~~~~~~~~~y~aPE~~~  205 (206)
                      |..+.++     ...+...||+-|||||...
T Consensus      1381 a~ki~~~~~~~~~el~~~~GT~~YMAPEvit 1411 (1509)
T KOG4645|consen 1381 AVKIKNNAQTMPGELQSMMGTPMYMAPEVIT 1411 (1509)
T ss_pred             eeEecCchhcCCHHHHhhcCCchhcCchhhc
Confidence            9876554     2455689999999999764

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.94  E-value=2.4e-26  Score=178.33  Aligned_cols=172  Identities=23%  Similarity=0.382  Sum_probs=139.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      .++|+..+.||.|+||.||++...      ++..+++|.+..... ...+.+.+|+.+++++.|+|++++++++..    
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~----   79 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAV----   79 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcC----
Confidence            567999999999999999999853      467899998875432 234568889999999999999999998764    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCC-------------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceec
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHA-------------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFS  156 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~-------------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h  156 (206)
                         +...++++||+++++|.+++.....                   ...+++..++.++.|++.||.|||+   .+++|
T Consensus        80 ---~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~---~~i~H  153 (288)
T cd05050          80 ---GKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSE---RKFVH  153 (288)
T ss_pred             ---CCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHh---CCeec
Confidence               5578999999999999999864311                   1246788899999999999999999   79999


Q ss_pred             cCCccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCCC
Q 028629          157 NNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       157 ~dl~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      +||+|+||++++++.++|+|||++.......   .......+..|+|||..
T Consensus       154 ~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  204 (288)
T cd05050         154 RDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESI  204 (288)
T ss_pred             ccccHhheEecCCCceEECccccceecccCccccccCCCccChhhcCHHHH
Confidence            9999999999999999999999987553321   12223345679999953

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.94  E-value=4.7e-26  Score=175.88  Aligned_cols=167  Identities=18%  Similarity=0.307  Sum_probs=136.5

Q ss_pred             CcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccC-CCceeeeccccccccccCCCCceE
Q 028629           26 FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      |+..+.||+|++|.||++... ++..+|+|.+.... ........+|+..+.++. |+|++++++++.+     ...+.+
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~-----~~~~~~   75 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFD-----RKTGRL   75 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEec-----CCCCcE
Confidence            567889999999999999965 78999999886542 222334567888898885 9999999998865     122678


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      ++++||+.+ ++.+.+....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++ +.++|+|||++..
T Consensus        76 ~lv~e~~~~-~l~~~l~~~~--~~~~~~~~~~~~~qi~~~L~~LH~---~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~  148 (282)
T cd07831          76 ALVFELMDM-NLYELIKGRK--RPLPEKRVKSYMYQLLKSLDHMHR---NGIFHRDIKPENILIKD-DILKLADFGSCRG  148 (282)
T ss_pred             EEEEecCCc-cHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHH---CCceecccCHHHEEEcC-CCeEEEecccccc
Confidence            999999975 8887776533  358999999999999999999999   79999999999999999 9999999999987


Q ss_pred             ccccccccccccCccccCCCCC
Q 028629          183 AENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       183 ~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ...........++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~  170 (282)
T cd07831         149 IYSKPPYTEYISTRWYRAPECL  170 (282)
T ss_pred             cccCCCcCCCCCCcccCChhHh
Confidence            7554433445678889999953

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.94  E-value=5.2e-26  Score=175.81  Aligned_cols=167  Identities=20%  Similarity=0.330  Sum_probs=139.8

Q ss_pred             CcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC-ccHHHHHHHHHHHhccC-CCceeeeccccccccccCCCCceE
Q 028629           26 FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      |...+.||.|++|.||+|... +++.|++|.+..... .......+|+..++++. |+|++++++.+..       .+..
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~-------~~~~   73 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRE-------NDEL   73 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhc-------CCcE
Confidence            567889999999999999986 688999998864432 22234567899999999 9999999998865       5678


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      +++|||+ +++|.+.+..... ..+++..+..++.|++.+|.|||+   .+++|+||+|+||++++++.++|+|||++..
T Consensus        74 ~lv~e~~-~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~Lh~---~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~  148 (283)
T cd07830          74 YFVFEYM-EGNLYQLMKDRKG-KPFSESVIRSIIYQILQGLAHIHK---HGFFHRDLKPENLLVSGPEVVKIADFGLARE  148 (283)
T ss_pred             EEEEecC-CCCHHHHHHhccc-ccCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEEcCCCCEEEeeccccee
Confidence            9999999 7799888876532 458999999999999999999999   7999999999999999999999999999987


Q ss_pred             ccccccccccccCccccCCCCC
Q 028629          183 AENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       183 ~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ...........++..|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~~~aPE~~  170 (283)
T cd07830         149 IRSRPPYTDYVSTRWYRAPEIL  170 (283)
T ss_pred             ccCCCCcCCCCCcccccCceee
Confidence            7654444445678889999964

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.94  E-value=2.6e-27  Score=177.04  Aligned_cols=172  Identities=17%  Similarity=0.243  Sum_probs=142.5

Q ss_pred             HHhcCCccc-ceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhcc-CCCceeeeccccccccccCC
Q 028629           21 EATNNFDTS-AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        21 ~~~~~~~~~-~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ..+.+|++- ++||-|-.|.|-.|..+ +++.+|+|++...     ....+|+++--.. .|+||+.+++++.+.+   .
T Consensus        58 ~itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds-----~KARrEVeLHw~~s~h~~iV~IidVyeNs~---~  129 (400)
T KOG0604|consen   58 SITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS-----PKARREVELHWMASGHPHIVSIIDVYENSY---Q  129 (400)
T ss_pred             cchhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC-----HHHHhHhhhhhhhcCCCceEEeehhhhhhc---c
Confidence            345667644 57999999999999976 8999999998622     3345677665444 5999999999986633   2


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec---CCCceeE
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD---QNLVAKI  174 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~---~~~~~kl  174 (206)
                      ...++.+|||.++||.|.+.++.+.. +.+++.+...|..||+.|+.|||+   .+|.||||||+|+|.+   .|..+|+
T Consensus       130 ~rkcLLiVmE~meGGeLfsriq~~g~-~afTErea~eI~~qI~~Av~~lH~---~nIAHRDlKpENLLyt~t~~na~lKL  205 (400)
T KOG0604|consen  130 GRKCLLIVMECMEGGELFSRIQDRGD-QAFTEREASEIMKQIGLAVRYLHS---MNIAHRDLKPENLLYTTTSPNAPLKL  205 (400)
T ss_pred             CceeeEeeeecccchHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHh---cchhhccCChhheeeecCCCCcceEe
Confidence            35678999999999999999987644 789999999999999999999999   8999999999999998   4568899


Q ss_pred             ccCCccccccccccccccccCccccCCCCC
Q 028629          175 SSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       175 ~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +|||+|+.-........-+-|+.|.|||..
T Consensus       206 tDfGFAK~t~~~~~L~TPc~TPyYvaPevl  235 (400)
T KOG0604|consen  206 TDFGFAKETQEPGDLMTPCFTPYYVAPEVL  235 (400)
T ss_pred             cccccccccCCCccccCCcccccccCHHHh
Confidence            999999988766666667889999999975

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.94  E-value=5.4e-27  Score=190.13  Aligned_cols=177  Identities=18%  Similarity=0.369  Sum_probs=153.4

Q ss_pred             HHHHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           17 EELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        17 ~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      ++|+....+..+..+||.|-||.||.|+|+ -...||+|.++ +..+..++|+.|..+|+.++|||++++.++|..    
T Consensus       260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLK-EDtMeveEFLkEAAvMKeikHpNLVqLLGVCT~----  334 (1157)
T KOG4278|consen  260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTH----  334 (1157)
T ss_pred             chhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhh-hcchhHHHHHHHHHHHHhhcCccHHHHhhhhcc----
Confidence            567777788888999999999999999987 57789999998 445677899999999999999999999999976    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                         +..+|||+||+..|+|.+++...++ +.++.--++.+|.||..||.||..   .++|||||...|+||.++..+||+
T Consensus       335 ---EpPFYIiTEfM~yGNLLdYLRecnr-~ev~avvLlyMAtQIsSaMeYLEk---knFIHRDLAARNCLVgEnhiVKvA  407 (1157)
T KOG4278|consen  335 ---EPPFYIITEFMCYGNLLDYLRECNR-SEVPAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHIVKVA  407 (1157)
T ss_pred             ---CCCeEEEEecccCccHHHHHHHhch-hhcchhHHHHHHHHHHHHHHHHHH---hhhhhhhhhhhhccccccceEEee
Confidence               6679999999999999999988766 778888899999999999999999   899999999999999999999999


Q ss_pred             cCCccccccccc-cccccccC-ccccCCCCCC
Q 028629          176 SYNLPLLAENAE-KVGHVTPY-SGSINPTNSA  205 (206)
Q Consensus       176 df~~a~~~~~~~-~~~~~~~~-~~y~aPE~~~  205 (206)
                      |||+++++..+. +...-... .-+.|||..+
T Consensus       408 DFGLsRlMtgDTYTAHAGAKFPIKWTAPEsLA  439 (1157)
T KOG4278|consen  408 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLA  439 (1157)
T ss_pred             ccchhhhhcCCceecccCccCcccccCccccc
Confidence            999999987653 22222222 2488999764

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.94  E-value=5.7e-26  Score=180.16  Aligned_cols=173  Identities=16%  Similarity=0.247  Sum_probs=141.6

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC--CCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK--KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|...+.||+|++|.||++... ++..|++|.+...  .......+.+|+.+++.++|+|++++.+++.....  ...
T Consensus         4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~--~~~   81 (337)
T cd07858           4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHR--EAF   81 (337)
T ss_pred             ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccc--ccc
Confidence            567999999999999999999965 7899999998643  23334567789999999999999999997754211  112


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...++++||+. ++|.+++...   ..+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||+
T Consensus        82 ~~~~lv~e~~~-~~L~~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~---~~i~H~dlkp~Nil~~~~~~~kL~Dfg~  154 (337)
T cd07858          82 NDVYIVYELMD-TDLHQIIRSS---QTLSDDHCQYFLYQLLRGLKYIHS---ANVLHRDLKPSNLLLNANCDLKICDFGL  154 (337)
T ss_pred             CcEEEEEeCCC-CCHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCEEECcCcc
Confidence            45899999996 5888888764   458999999999999999999999   7999999999999999999999999999


Q ss_pred             ccccccc-ccccccccCccccCCCCC
Q 028629          180 PLLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      +...... .......++..|+|||..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~y~aPE~~  180 (337)
T cd07858         155 ARTTSEKGDFMTEYVVTRWYRAPELL  180 (337)
T ss_pred             ccccCCCcccccccccccCccChHHH
Confidence            9876543 222334677889999964

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.94  E-value=3.9e-26  Score=181.05  Aligned_cols=170  Identities=16%  Similarity=0.287  Sum_probs=139.7

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC--CCccHHHHHHHHHHHhcc-CCCceeeeccccccccccCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK--KSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ..++|...+.||+|++|.||+|... ++..+++|.+...  .......+..|+.+++++ +|+||+++++++..     .
T Consensus         5 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~-----~   79 (337)
T cd07852           5 ILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKA-----E   79 (337)
T ss_pred             hhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeecc-----C
Confidence            4678999999999999999999976 6889999988542  223345677899999999 99999999998753     1


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      .....++++||+.+ +|.+++...    .+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+||
T Consensus        80 ~~~~~~lv~e~~~~-~L~~~~~~~----~~~~~~~~~i~~qi~~~L~~LH~---~~i~H~dl~p~nill~~~~~~kl~d~  151 (337)
T cd07852          80 NDKDIYLVFEYMET-DLHAVIRAN----ILEDVHKRYIMYQLLKALKYIHS---GNVIHRDLKPSNILLNSDCRVKLADF  151 (337)
T ss_pred             CCceEEEEeccccc-CHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCcEEEeec
Confidence            23468999999975 898888653    47888899999999999999999   79999999999999999999999999


Q ss_pred             Cccccccccc------cccccccCccccCCCCC
Q 028629          178 NLPLLAENAE------KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~------~~~~~~~~~~y~aPE~~  204 (206)
                      |++.......      ......++..|+|||..
T Consensus       152 g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  184 (337)
T cd07852         152 GLARSLSELEENPENPVLTDYVATRWYRAPEIL  184 (337)
T ss_pred             cchhccccccccccCcchhcccccccccCceee
Confidence            9998654322      22234678889999964

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.94  E-value=5.4e-26  Score=180.72  Aligned_cols=173  Identities=13%  Similarity=0.234  Sum_probs=140.3

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ...++|+..+.||+|++|.||++... ++..||+|.+....  ......+.+|+.++++++|+||+++.+.+...... .
T Consensus        12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~-~   90 (343)
T cd07880          12 EVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSL-D   90 (343)
T ss_pred             ccccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCccc-c
Confidence            35678999999999999999999965 79999999986432  22345678899999999999999999877541100 1


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      .....++++|++ +++|.+++..    ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++++||
T Consensus        91 ~~~~~~lv~e~~-~~~l~~~~~~----~~l~~~~~~~i~~qi~~al~~LH~---~gi~H~dlkp~Nill~~~~~~kl~df  162 (343)
T cd07880          91 RFHDFYLVMPFM-GTDLGKLMKH----EKLSEDRIQFLVYQMLKGLKYIHA---AGIIHRDLKPGNLAVNEDCELKILDF  162 (343)
T ss_pred             ccceEEEEEecC-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeec
Confidence            123568999998 6689888764    358899999999999999999999   79999999999999999999999999


Q ss_pred             CccccccccccccccccCccccCCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |++........  ...++..|+|||..
T Consensus       163 g~~~~~~~~~~--~~~~~~~y~aPE~~  187 (343)
T cd07880         163 GLARQTDSEMT--GYVVTRWYRAPEVI  187 (343)
T ss_pred             ccccccccCcc--ccccCCcccCHHHH
Confidence            99986654322  24667889999953

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.94  E-value=1.4e-25  Score=172.52  Aligned_cols=168  Identities=14%  Similarity=0.199  Sum_probs=135.6

Q ss_pred             HHHHHHHhcCCccccee--ccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhcc-CCCceeeecccccc
Q 028629           16 LEELEEATNNFDTSAFM--GEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFE   91 (206)
Q Consensus        16 ~~~~~~~~~~~~~~~~l--g~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~   91 (206)
                      +.+.....++|.+.+.+  |+|+||.||++... ++..+++|.+........     |+.....+ +|+|++++++.+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~-----e~~~~~~~~~h~~iv~~~~~~~~   80 (267)
T PHA03390          6 LSELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAI-----EPMVHQLMKDNPNFIKLYYSVTT   80 (267)
T ss_pred             HHHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcchh-----hHHHHHHhhcCCCEEEEEEEEec
Confidence            44555566788887776  99999999999975 788999999874432211     22222222 69999999998865


Q ss_pred             ccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC-
Q 028629           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-  170 (206)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~-  170 (206)
                             .+..+++|||+++++|.+++...   ..+++..++.++.|++.|+.|||+   .+++|+||+|+||+++.++ 
T Consensus        81 -------~~~~~iv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nil~~~~~~  147 (267)
T PHA03390         81 -------LKGHVLIMDYIKDGDLFDLLKKE---GKLSEAEVKKIIRQLVEALNDLHK---HNIIHNDIKLENVLYDRAKD  147 (267)
T ss_pred             -------CCeeEEEEEcCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEEeCCCC
Confidence                   56899999999999999999765   368999999999999999999999   7999999999999999888 


Q ss_pred             ceeEccCCccccccccccccccccCccccCCCCC
Q 028629          171 VAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       171 ~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      .++|+|||++......   ....++..|+|||..
T Consensus       148 ~~~l~dfg~~~~~~~~---~~~~~~~~y~aPE~~  178 (267)
T PHA03390        148 RIYLCDYGLCKIIGTP---SCYDGTLDYFSPEKI  178 (267)
T ss_pred             eEEEecCccceecCCC---ccCCCCCcccChhhh
Confidence            9999999998766532   234678899999975

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.94  E-value=7.2e-26  Score=180.15  Aligned_cols=181  Identities=13%  Similarity=0.192  Sum_probs=144.5

Q ss_pred             eeCHHHHHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeecccc
Q 028629           13 TFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHC   89 (206)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~   89 (206)
                      .....++....++|...+.||+|+||.||++... ++..||+|.+....  ....+.+.+|+.++++++|+||+++.+++
T Consensus         6 ~~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~   85 (345)
T cd07877           6 QELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVF   85 (345)
T ss_pred             hhHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeee
Confidence            3344566667899999999999999999999864 78999999987432  22345678899999999999999999877


Q ss_pred             ccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC
Q 028629           90 FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN  169 (206)
Q Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~  169 (206)
                      ...... ......+++++++ +++|.+++...    .+++..++.++.|++.||.|||+   .+++|+||+|+||+++++
T Consensus        86 ~~~~~~-~~~~~~~lv~~~~-~~~L~~~~~~~----~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIll~~~  156 (345)
T cd07877          86 TPARSL-EEFNDVYLVTHLM-GADLNNIVKCQ----KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNED  156 (345)
T ss_pred             eecccc-cccccEEEEehhc-ccCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChHHEEEcCC
Confidence            532111 1123577888877 67998877653    48899999999999999999999   799999999999999999


Q ss_pred             CceeEccCCccccccccccccccccCccccCCCCC
Q 028629          170 LVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       170 ~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +.++|+|||++.......  ....++..|+|||..
T Consensus       157 ~~~kl~dfg~~~~~~~~~--~~~~~~~~y~aPE~~  189 (345)
T cd07877         157 CELKILDFGLARHTDDEM--TGYVATRWYRAPEIM  189 (345)
T ss_pred             CCEEEecccccccccccc--cccccCCCccCHHHH
Confidence            999999999998654322  234677889999953

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.94  E-value=9.9e-26  Score=175.35  Aligned_cols=169  Identities=18%  Similarity=0.323  Sum_probs=137.2

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ++|+..+.||.|.+|.||+|... +++.|++|.+....  ....+.+.+|++++++++|+|++++++++..       ..
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~   74 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHS-------EK   74 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEec-------CC
Confidence            57899999999999999999976 78999999886543  2233567889999999999999999998865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC-CCceeEccCCc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-NLVAKISSYNL  179 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~-~~~~kl~df~~  179 (206)
                      ..++++||+++ ++.+.+..... ...++..++.++.|++.||.|||+   .+++|+||+|+||++++ ++.++|+|||+
T Consensus        75 ~~~lv~e~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~LH~---~~i~H~dl~p~nill~~~~~~~kl~dfg~  149 (294)
T PLN00009         75 RLYLVFEYLDL-DLKKHMDSSPD-FAKNPRLIKTYLYQILRGIAYCHS---HRVLHRDLKPQNLLIDRRTNALKLADFGL  149 (294)
T ss_pred             eEEEEEecccc-cHHHHHHhCCC-CCcCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCcceEEEECCCCEEEEccccc
Confidence            89999999965 78777755432 335788888999999999999999   79999999999999985 56799999999


Q ss_pred             cccccccc-cccccccCccccCCCCC
Q 028629          180 PLLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      +....... ......++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~y~~PE~~  175 (294)
T PLN00009        150 ARAFGIPVRTFTHEVVTLWYRAPEIL  175 (294)
T ss_pred             ccccCCCccccccCceeecccCHHHH
Confidence            97654322 12223557789999953

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.94  E-value=1.6e-25  Score=173.01  Aligned_cols=160  Identities=20%  Similarity=0.263  Sum_probs=128.6

Q ss_pred             eeccCcceeEEEEEEe-CCcEEEEEEeecCCC---ccHHHHHHHHH---HHhccCCCceeeeccccccccccCCCCceEE
Q 028629           31 FMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIE---LISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (206)
Q Consensus        31 ~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~---~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~  103 (206)
                      .||+|+||.||++... +++.||+|.+.....   ........|..   .++...|++++++.+.+..       .+..+
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~   73 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHT-------PDKLS   73 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeec-------CCEEE
Confidence            3799999999999965 689999999875421   11122334433   3444579999998887754       56799


Q ss_pred             EEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccc
Q 028629          104 LIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  183 (206)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~  183 (206)
                      +++||+.+++|.+++...   ..+++..+..++.|++.|+.|||+   .+++|+||+|+||++++++.++|+|||++...
T Consensus        74 ~v~e~~~g~~L~~~l~~~---~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~di~p~nili~~~~~~kl~dfg~~~~~  147 (278)
T cd05606          74 FILDLMNGGDLHYHLSQH---GVFSEAEMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDF  147 (278)
T ss_pred             EEEecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCEEcCCCCHHHEEECCCCCEEEccCcCcccc
Confidence            999999999999888654   468999999999999999999999   79999999999999999999999999998765


Q ss_pred             cccccccccccCccccCCCCC
Q 028629          184 ENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       184 ~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      .... .....++..|+|||..
T Consensus       148 ~~~~-~~~~~~~~~y~aPE~~  167 (278)
T cd05606         148 SKKK-PHASVGTHGYMAPEVL  167 (278)
T ss_pred             CccC-CcCcCCCcCCcCcHHh
Confidence            4322 2335788899999975

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.94  E-value=6.8e-26  Score=179.13  Aligned_cols=170  Identities=19%  Similarity=0.283  Sum_probs=140.7

Q ss_pred             HHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           19 LEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        19 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      ...+.++|+..+.||.|+||.||++... ++..|++|.+....  ....+.+.+|+++++.++|||++++.+++..    
T Consensus         5 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~----   80 (328)
T cd07856           5 VFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFIS----   80 (328)
T ss_pred             eeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEec----
Confidence            3456789999999999999999999965 79999999886432  2345678889999999999999999997753    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                        .....++++|++ +++|.+++...    .+++.....++.|++.||.|||+   .+++|+||+|+||++++++.++|+
T Consensus        81 --~~~~~~lv~e~~-~~~L~~~~~~~----~~~~~~~~~~~~ql~~aL~~LH~---~~iiH~dl~p~Nili~~~~~~~l~  150 (328)
T cd07856          81 --PLEDIYFVTELL-GTDLHRLLTSR----PLEKQFIQYFLYQILRGLKYVHS---AGVVHRDLKPSNILINENCDLKIC  150 (328)
T ss_pred             --CCCcEEEEeehh-ccCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEeECCCCCEEeC
Confidence              234688999998 45898887653    47788888999999999999999   799999999999999999999999


Q ss_pred             cCCccccccccccccccccCccccCCCCC
Q 028629          176 SYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       176 df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |||.+.......  ....++..|+|||..
T Consensus       151 dfg~~~~~~~~~--~~~~~~~~y~aPE~~  177 (328)
T cd07856         151 DFGLARIQDPQM--TGYVSTRYYRAPEIM  177 (328)
T ss_pred             ccccccccCCCc--CCCcccccccCceee
Confidence            999998654322  224567789999964

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.94  E-value=5.9e-26  Score=179.39  Aligned_cols=171  Identities=20%  Similarity=0.257  Sum_probs=142.5

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +|...+.||.|++|.||+|... ++..+++|.+....  ....+.+.+|+..++.++|+||+++.+++.....  .....
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--~~~~~   78 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSP--EDFND   78 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCc--ccccc
Confidence            5888999999999999999976 68999999987543  3445678899999999999999999998865211  12246


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      +++++||+.+ +|.+++...   ..+++..++.++.|++.||.+||+   .+++|+||+|.||++++++.++|+|||++.
T Consensus        79 ~~lv~e~~~~-~l~~~l~~~---~~l~~~~~~~i~~~l~~~l~~LH~---~gi~H~dlkp~nili~~~~~~~L~dfg~~~  151 (330)
T cd07834          79 VYIVTELMET-DLHKVIKSP---QPLTDDHIQYFLYQILRGLKYLHS---ANVIHRDLKPSNILVNSNCDLKICDFGLAR  151 (330)
T ss_pred             eEEEecchhh-hHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEcccCceE
Confidence            8999999974 888888765   368999999999999999999999   799999999999999999999999999998


Q ss_pred             cccccc----cccccccCccccCCCCC
Q 028629          182 LAENAE----KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~----~~~~~~~~~~y~aPE~~  204 (206)
                      ......    ......++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~y~aPE~~  178 (330)
T cd07834         152 GVDPDEDEKGFLTEYVVTRWYRAPELL  178 (330)
T ss_pred             eecccccccccccccccccCcCCceee
Confidence            776543    23334677889999964

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.94  E-value=2.7e-26  Score=190.57  Aligned_cols=173  Identities=12%  Similarity=0.134  Sum_probs=130.6

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe--CCcEEEEEEee--------------c---CCCccHHHHHHHHHHHhccCCCc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK--NGTFIAIRCLK--------------M---KKSHSTRNFMHHIELISKLRHCH   81 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~--~~~~vaiK~~~--------------~---~~~~~~~~~~~e~~~l~~l~h~~   81 (206)
                      ...++|++.+.||+|+||.||+|..+  ++...+.|.+.              +   ........+.+|++++++++|+|
T Consensus       145 ~~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~Hpn  224 (501)
T PHA03210        145 EFLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHEN  224 (501)
T ss_pred             hhhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCC
Confidence            34578999999999999999999864  22222222111              0   11122345788999999999999


Q ss_pred             eeeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCC--CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCC
Q 028629           82 LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA--WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNL  159 (206)
Q Consensus        82 i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl  159 (206)
                      |+++++++..       .+..+++++++.+ ++.+++.....  ...........++.|++.||.|||+   .+|+||||
T Consensus       225 Iv~l~~~~~~-------~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~---~gIiHrDL  293 (501)
T PHA03210        225 ILKIEEILRS-------EANTYMITQKYDF-DLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHD---KKLIHRDI  293 (501)
T ss_pred             cCcEeEEEEE-------CCeeEEEEecccc-CHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHh---CCeecCCC
Confidence            9999998865       5678999999854 77776643211  1223356677899999999999999   79999999


Q ss_pred             ccccEEecCCCceeEccCCcccccccccc--ccccccCccccCCCCC
Q 028629          160 KITDILLDQNLVAKISSYNLPLLAENAEK--VGHVTPYSGSINPTNS  204 (206)
Q Consensus       160 ~p~nil~~~~~~~kl~df~~a~~~~~~~~--~~~~~~~~~y~aPE~~  204 (206)
                      ||+|||++.++.+||+|||++........  .....|+..|+|||..
T Consensus       294 KP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~  340 (501)
T PHA03210        294 KLENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEIL  340 (501)
T ss_pred             CHHHEEECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhh
Confidence            99999999999999999999987654322  2235789999999975

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.94  E-value=1.5e-25  Score=176.25  Aligned_cols=165  Identities=16%  Similarity=0.301  Sum_probs=138.4

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC---ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      +.|...+.||+|+||.||++... ++..+++|.+.....   .....+.+|++++++++|+|++++.+++..       .
T Consensus        25 ~~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-------~   97 (317)
T cd06635          25 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLR-------E   97 (317)
T ss_pred             hhhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-------C
Confidence            45888999999999999999975 788999999874422   233568889999999999999999998865       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...++++||+.+ ++.+.+....  ..+++..+..++.|++.|+.|||+   .+++|+||+|+||+++.++.++|+|||+
T Consensus        98 ~~~~lv~e~~~g-~l~~~~~~~~--~~l~~~~~~~i~~~i~~~l~~lH~---~~i~H~dL~p~Nil~~~~~~~kl~dfg~  171 (317)
T cd06635          98 HTAWLVMEYCLG-SASDLLEVHK--KPLQEVEIAAITHGALQGLAYLHS---HNMIHRDIKAGNILLTEPGQVKLADFGS  171 (317)
T ss_pred             CeEEEEEeCCCC-CHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcccEEECCCCCEEEecCCC
Confidence            678999999975 7777665432  458899999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +......   ....++..|+|||..
T Consensus       172 ~~~~~~~---~~~~~~~~y~aPE~~  193 (317)
T cd06635         172 ASIASPA---NSFVGTPYWMAPEVI  193 (317)
T ss_pred             ccccCCc---ccccCCccccChhhh
Confidence            8765432   234677889999974

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.94  E-value=1.1e-26  Score=186.59  Aligned_cols=167  Identities=16%  Similarity=0.204  Sum_probs=144.1

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCcc--------HHHHHHHHHHHhccC---CCceeeecccccc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHS--------TRNFMHHIELISKLR---HCHLVSALGHCFE   91 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~--------~~~~~~e~~~l~~l~---h~~i~~~~~~~~~   91 (206)
                      .+|...+.+|.|+||.|++|.++ +...|++|.+.+++-..        .-.+..||++|..++   |+||+++.++|.+
T Consensus       561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEd  640 (772)
T KOG1152|consen  561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFED  640 (772)
T ss_pred             ccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeec
Confidence            46899999999999999999987 67889999998664111        113566999999997   9999999999976


Q ss_pred             ccccCCCCceEEEEEeec-CCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC
Q 028629           92 CYFDDSSVSRIFLIFEYV-PNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL  170 (206)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~-~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~  170 (206)
                             +++++++||.. ++.+|.+++...   +.+++.....|++|++.|+++||+   .+|+|||||-+|+.++.+|
T Consensus       641 -------dd~yyl~te~hg~gIDLFd~IE~k---p~m~E~eAk~IFkQV~agi~hlh~---~~ivhrdikdenvivd~~g  707 (772)
T KOG1152|consen  641 -------DDYYYLETEVHGEGIDLFDFIEFK---PRMDEPEAKLIFKQVVAGIKHLHD---QGIVHRDIKDENVIVDSNG  707 (772)
T ss_pred             -------CCeeEEEecCCCCCcchhhhhhcc---CccchHHHHHHHHHHHhccccccc---cCceecccccccEEEecCC
Confidence                   77899999976 456999999876   559999999999999999999999   8999999999999999999


Q ss_pred             ceeEccCCccccccccccccccccCccccCCCCC
Q 028629          171 VAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       171 ~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      -+||+|||.|....+.. --...||.+|.|||..
T Consensus       708 ~~klidfgsaa~~ksgp-fd~f~gtv~~aapevl  740 (772)
T KOG1152|consen  708 FVKLIDFGSAAYTKSGP-FDVFVGTVDYAAPEVL  740 (772)
T ss_pred             eEEEeeccchhhhcCCC-cceeeeeccccchhhh
Confidence            99999999998877643 3447999999999963

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.94  E-value=1.2e-25  Score=178.15  Aligned_cols=169  Identities=16%  Similarity=0.255  Sum_probs=137.3

Q ss_pred             HhcCCcc-cceeccCcceeEEEEEEe-CCcEEEEEEeecCCCcc--------------HHHHHHHHHHHhccCCCceeee
Q 028629           22 ATNNFDT-SAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHS--------------TRNFMHHIELISKLRHCHLVSA   85 (206)
Q Consensus        22 ~~~~~~~-~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~--------------~~~~~~e~~~l~~l~h~~i~~~   85 (206)
                      ..++|.. .+.||.|++|.||+|... ++..||+|.+.......              ...+.+|+++++.++|+|++++
T Consensus         6 ~~~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~   85 (335)
T PTZ00024          6 ISERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGL   85 (335)
T ss_pred             cccchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeee
Confidence            3567764 567999999999999965 78999999986432211              1246789999999999999999


Q ss_pred             ccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEE
Q 028629           86 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL  165 (206)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil  165 (206)
                      .+++..       .+..++++|++. ++|.+++...   ..+++.....++.|++.||.+||+   .+++|+||+|+||+
T Consensus        86 ~~~~~~-------~~~~~lv~e~~~-~~l~~~l~~~---~~~~~~~~~~~~~ql~~aL~~LH~---~~i~H~dl~~~nil  151 (335)
T PTZ00024         86 VDVYVE-------GDFINLVMDIMA-SDLKKVVDRK---IRLTESQVKCILLQILNGLNVLHK---WYFMHRDLSPANIF  151 (335)
T ss_pred             eEEEec-------CCcEEEEEeccc-cCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeecccccHHHeE
Confidence            998764       567899999997 4899888764   458899999999999999999999   79999999999999


Q ss_pred             ecCCCceeEccCCcccccccc---------------ccccccccCccccCCCCC
Q 028629          166 LDQNLVAKISSYNLPLLAENA---------------EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       166 ~~~~~~~kl~df~~a~~~~~~---------------~~~~~~~~~~~y~aPE~~  204 (206)
                      ++.++.++|+|||++......               .......++..|+|||..
T Consensus       152 l~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  205 (335)
T PTZ00024        152 INSKGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELL  205 (335)
T ss_pred             ECCCCCEEECCccceeecccccccccccccccccccccccccccccCCCCChhc
Confidence            999999999999999765511               111123456789999964

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=1.4e-25  Score=171.46  Aligned_cols=159  Identities=18%  Similarity=0.251  Sum_probs=129.6

Q ss_pred             ceeccCcceeEEEEEEe-CCcEEEEEEeecCCC---ccHHHHHHHHHH-HhccCCCceeeeccccccccccCCCCceEEE
Q 028629           30 AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIEL-ISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~~-l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +.||.|++|.||+|... +++.||+|.+.....   .....+..|... ....+|+|++++++.+..       .+..++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~-------~~~~~l   74 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQS-------KDYLYL   74 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEc-------CCeEEE
Confidence            56899999999999975 688999999864321   112233444444 344589999999998865       567999


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      ++||+++++|.+++...   ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++....
T Consensus        75 v~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  148 (260)
T cd05611          75 VMEYLNGGDCASLIKTL---GGLPEDWAKQYIAEVVLGVEDLHQ---RGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGL  148 (260)
T ss_pred             EEeccCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCcEEEeecccceecc
Confidence            99999999999998765   458899999999999999999999   799999999999999999999999999987654


Q ss_pred             ccccccccccCccccCCCCC
Q 028629          185 NAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       185 ~~~~~~~~~~~~~y~aPE~~  204 (206)
                      .   .....++..|+|||..
T Consensus       149 ~---~~~~~~~~~y~~pe~~  165 (260)
T cd05611         149 E---NKKFVGTPDYLAPETI  165 (260)
T ss_pred             c---cccCCCCcCccChhhh
Confidence            3   2334677889999974

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.94  E-value=1.4e-25  Score=174.86  Aligned_cols=172  Identities=16%  Similarity=0.314  Sum_probs=139.6

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccC-CCceeeeccccccccccCCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ..++|...+.||+|++|.||+|... ++..||+|.+.... ......+..|+..+.+.. |+||+++++.+..       
T Consensus        13 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~-------   85 (296)
T cd06618          13 DLNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFIT-------   85 (296)
T ss_pred             CcchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeec-------
Confidence            4577899999999999999999987 58999999997543 233455667787777775 9999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ....++++||+.+ ++..+.....  ..+++..+..++.|++.++.|||+.  .+++|+||+|+||++++++.++|+|||
T Consensus        86 ~~~~~~v~e~~~~-~l~~l~~~~~--~~l~~~~~~~i~~~i~~~l~~lH~~--~~i~H~dl~p~nill~~~~~~kL~dfg  160 (296)
T cd06618          86 DSDVFICMELMST-CLDKLLKRIQ--GPIPEDILGKMTVAIVKALHYLKEK--HGVIHRDVKPSNILLDASGNVKLCDFG  160 (296)
T ss_pred             CCeEEEEeeccCc-CHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhh--CCEecCCCcHHHEEEcCCCCEEECccc
Confidence            5679999999854 7777765533  3688999999999999999999973  489999999999999999999999999


Q ss_pred             ccccccccccccccccCccccCCCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~~~  205 (206)
                      ++.............++..|+|||...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~y~aPE~~~  187 (296)
T cd06618         161 ISGRLVDSKAKTRSAGCAAYMAPERID  187 (296)
T ss_pred             cchhccCCCcccCCCCCccccCHhhcC
Confidence            998765443333345677899999764

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.94  E-value=1.1e-25  Score=173.79  Aligned_cols=172  Identities=22%  Similarity=0.339  Sum_probs=137.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      .++|...+.||+|++|.||+|...      ++..|++|.+.... ......+.+|+.+++.++|+||+++++++.+    
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~----   80 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFE----   80 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEcc----
Confidence            467999999999999999999975      35678899886443 2234568889999999999999999998765    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCC----CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC-
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHA----WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-  170 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~-  170 (206)
                         ....++++||+++++|.+++.....    ...+++..+..++.|++.|+.|||+   .+++|+||+|+||++++++ 
T Consensus        81 ---~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~nil~~~~~~  154 (277)
T cd05036          81 ---RLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEE---NHFIHRDIAARNCLLTCKGP  154 (277)
T ss_pred             ---CCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccchheEEEeccCC
Confidence               4567899999999999999865421    1258899999999999999999999   7999999999999998654 


Q ss_pred             --ceeEccCCcccccccccc---ccccccCccccCCCCC
Q 028629          171 --VAKISSYNLPLLAENAEK---VGHVTPYSGSINPTNS  204 (206)
Q Consensus       171 --~~kl~df~~a~~~~~~~~---~~~~~~~~~y~aPE~~  204 (206)
                        .++|+|||+++.......   ......+..|+|||..
T Consensus       155 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  193 (277)
T cd05036         155 GRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAF  193 (277)
T ss_pred             CcceEeccCccccccCCccceecCCCCCccHhhCCHHHH
Confidence              689999999987643221   1112234579999964

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.94  E-value=5.4e-26  Score=176.30  Aligned_cols=170  Identities=14%  Similarity=0.232  Sum_probs=136.6

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccC-CCceeeeccccccccccCCCCc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .+|...+.||+|+||.||++... ++..+|+|.+.... ......+.+|+..+.++. |+||+++++++..       .+
T Consensus         4 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~-------~~   76 (288)
T cd06616           4 EDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFR-------EG   76 (288)
T ss_pred             HHhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEec-------CC
Confidence            35667788999999999999976 68999999987543 234457888999999996 9999999998765       45


Q ss_pred             eEEEEEeecCCCCHHHHHh---cCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629          101 RIFLIFEYVPNGTLRSWIS---EGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~---~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      ..++++|++.. ++.++..   .... ..+++..+..++.|++.||.|||+.  .+++|+||+|+||++++++.++|+||
T Consensus        77 ~~~~~~e~~~~-~l~~l~~~~~~~~~-~~l~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~~~kl~df  152 (288)
T cd06616          77 DCWICMELMDI-SLDKFYKYVYEVLK-SVIPEEILGKIAVATVKALNYLKEE--LKIIHRDVKPSNILLDRNGNIKLCDF  152 (288)
T ss_pred             cEEEEEecccC-CHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHhhc--CCeeccCCCHHHEEEccCCcEEEeec
Confidence            68899999864 5555432   1111 4689999999999999999999973  48999999999999999999999999


Q ss_pred             CccccccccccccccccCccccCCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |++.............++..|+|||..
T Consensus       153 g~~~~~~~~~~~~~~~~~~~y~aPE~~  179 (288)
T cd06616         153 GISGQLVDSIAKTRDAGCRPYMAPERI  179 (288)
T ss_pred             chhHHhccCCccccccCccCccCHHHh
Confidence            999866544433445678889999975

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.94  E-value=1.2e-25  Score=171.12  Aligned_cols=169  Identities=20%  Similarity=0.333  Sum_probs=142.6

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +|+..+.||.|++|.||++... ++..+++|.+....  ......+.+|+++++.++|+||+++.+.+..       ...
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~   73 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLD-------GNK   73 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhcc-------CCE
Confidence            5788899999999999999865 78899999987542  2334567789999999999999999988865       568


Q ss_pred             EEEEEeecCCCCHHHHHhcCC-CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          102 IFLIFEYVPNGTLRSWISEGH-AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      .++++||+++++|.+++.... ....+++..++.++.|++.|+.+||+   .+++|+||+|+||++++++.++++|||++
T Consensus        74 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~---~~i~h~~l~~~ni~~~~~~~~kl~d~g~~  150 (256)
T cd08530          74 LCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHE---QKILHRDLKSANILLVANDLVKIGDLGIS  150 (256)
T ss_pred             EEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCcceEEEecCCcEEEeeccch
Confidence            999999999999999886521 11458899999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccccccccccCccccCCCCC
Q 028629          181 LLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ....... .....++..|++||..
T Consensus       151 ~~~~~~~-~~~~~~~~~~~~Pe~~  173 (256)
T cd08530         151 KVLKKNM-AKTQIGTPHYMAPEVW  173 (256)
T ss_pred             hhhccCC-cccccCCccccCHHHH
Confidence            8776552 2235677889999964

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.94  E-value=1.1e-25  Score=187.63  Aligned_cols=186  Identities=17%  Similarity=0.318  Sum_probs=157.6

Q ss_pred             eeCHHHHHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhcc-CCCceeeeccccc
Q 028629           13 TFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCF   90 (206)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~   90 (206)
                      .+.+..+......|.+.+.+|.|.+|.||+++.. ++...|+|...... ...+++..|.++++.. .|||++.+++++.
T Consensus         8 ~~~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~-d~deEiE~eynil~~~~~hpnv~~fyg~~~   86 (953)
T KOG0587|consen    8 DIDLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTE-DEEEEIELEYNMLKKYSHHPNVATFYGAFI   86 (953)
T ss_pred             ccchhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCc-cccHHHHHHHHHHHhccCCCCcceEEEEEE
Confidence            3445556667788999999999999999999965 78888888876443 3345667788888888 5999999999886


Q ss_pred             cccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC
Q 028629           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL  170 (206)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~  170 (206)
                      ...-  ..++.+|||||||.+||..+++++..+ ..+.|+.+..|++.++.|+.+||+   ..++|||+|=.|||++.++
T Consensus        87 k~~~--~~~DqLWLVMEfC~gGSVTDLVKn~~g-~rl~E~~IaYI~re~lrgl~HLH~---nkviHRDikG~NiLLT~e~  160 (953)
T KOG0587|consen   87 KKDP--GNGDQLWLVMEFCGGGSVTDLVKNTKG-NRLKEEWIAYILREILRGLAHLHN---NKVIHRDIKGQNVLLTENA  160 (953)
T ss_pred             EecC--CCCCeEEEEeeccCCccHHHHHhhhcc-cchhhHHHHHHHHHHHHHHHHHhh---cceeeecccCceEEEeccC
Confidence            5332  346789999999999999999987653 679999999999999999999999   5999999999999999999


Q ss_pred             ceeEccCCcccccccc-ccccccccCccccCCCCCC
Q 028629          171 VAKISSYNLPLLAENA-EKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       171 ~~kl~df~~a~~~~~~-~~~~~~~~~~~y~aPE~~~  205 (206)
                      .+|+.|||++...++. ...+...||+.+||||..|
T Consensus       161 ~VKLvDFGvSaQldsT~grRnT~iGtP~WMAPEVia  196 (953)
T KOG0587|consen  161 EVKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIA  196 (953)
T ss_pred             cEEEeeeeeeeeeecccccccCcCCCcccccceeee
Confidence            9999999999988765 5677789999999999765

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=3.7e-26  Score=187.20  Aligned_cols=163  Identities=23%  Similarity=0.304  Sum_probs=140.0

Q ss_pred             eeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEEEeec
Q 028629           31 FMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYV  109 (206)
Q Consensus        31 ~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~  109 (206)
                      +||+|++|.||.|+.. +.-..|||.+........+.++.||.+-+.++|.||+++.|.+.+       ++.+-+.||.+
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~se-------nGf~kIFMEqV  654 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSE-------NGFFKIFMEQV  654 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCC-------CCeEEEEeecC
Confidence            5999999999999966 677889999976666667789999999999999999999998754       67888999999


Q ss_pred             CCCCHHHHHhcCCCCccc--CHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC-CCceeEccCCccccccc-
Q 028629          110 PNGTLRSWISEGHAWQSL--TWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-NLVAKISSYNLPLLAEN-  185 (206)
Q Consensus       110 ~~~~L~~~~~~~~~~~~~--~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~-~~~~kl~df~~a~~~~~-  185 (206)
                      +||+|.+++...=  .++  ++.+.-.+..||+.||.|||+   ..|+|||||-.|+||+. .|.+||+|||.++..-. 
T Consensus       655 PGGSLSsLLrskW--GPlKDNEstm~fYtkQILeGLkYLHe---n~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAgi  729 (1226)
T KOG4279|consen  655 PGGSLSSLLRSKW--GPLKDNESTMNFYTKQILEGLKYLHE---NKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGI  729 (1226)
T ss_pred             CCCcHHHHHHhcc--CCCccchhHHHHHHHHHHHHhhhhhh---cceeeccccCCcEEEeeccceEEecccccchhhccC
Confidence            9999999997632  344  788899999999999999999   69999999999999984 68999999999976532 


Q ss_pred             cccccccccCccccCCCCCC
Q 028629          186 AEKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       186 ~~~~~~~~~~~~y~aPE~~~  205 (206)
                      ..-.....||..|||||-++
T Consensus       730 nP~TETFTGTLQYMAPEvID  749 (1226)
T KOG4279|consen  730 NPCTETFTGTLQYMAPEVID  749 (1226)
T ss_pred             CccccccccchhhhChHhhc
Confidence            23344579999999999765

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.93  E-value=2.7e-25  Score=173.93  Aligned_cols=176  Identities=18%  Similarity=0.324  Sum_probs=139.8

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC--ccHHHHHHHHHHHhccCCCceeeecccccccccc-CCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFD-DSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~-~~~   98 (206)
                      .++|+..+.||.|++|.||+|... ++..+++|.+.....  .....+.+|+++++.++|+||+++++.+...... ...
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            578999999999999999999976 688999999865432  2234567899999999999999999877542211 122


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ...+++++||+.+ ++...+....  ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||
T Consensus        87 ~~~~~lv~~~~~~-~l~~~~~~~~--~~~~~~~~~~i~~~l~~al~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg  160 (311)
T cd07866          87 RGSVYMVTPYMDH-DLSGLLENPS--VKLTESQIKCYMLQLLEGINYLHE---NHILHRDIKAANILIDNQGILKIADFG  160 (311)
T ss_pred             CceEEEEEecCCc-CHHHHHhccc--cCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCCCCEEECcCc
Confidence            3468999999965 7777665432  458999999999999999999999   799999999999999999999999999


Q ss_pred             cccccccccc------------ccccccCccccCCCCC
Q 028629          179 LPLLAENAEK------------VGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~~------------~~~~~~~~~y~aPE~~  204 (206)
                      ++........            .....++..|+|||..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  198 (311)
T cd07866         161 LARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELL  198 (311)
T ss_pred             cchhccCCCcccccCCcccccccccceeccCcCChHHh
Confidence            9986543221            1123557789999963

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.93  E-value=2.5e-26  Score=163.70  Aligned_cols=178  Identities=15%  Similarity=0.251  Sum_probs=145.8

Q ss_pred             HHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhcc-CCCceeeecccccccccc
Q 028629           19 LEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFD   95 (206)
Q Consensus        19 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~   95 (206)
                      ++...+....+..||+|++|.|-+.++. +|...|+|.+...- ....++.++|+.+..+. .+|.++.+++..+.    
T Consensus        41 ~eV~ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~r----  116 (282)
T KOG0984|consen   41 FEVPADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFR----  116 (282)
T ss_pred             cccchhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhc----
Confidence            4455566777888999999999999975 89999999986442 44456778888776665 79999999998765    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcC-CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeE
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEG-HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI  174 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl  174 (206)
                         ....|+.||.++. ||..+...- ......++.-+-.+|..+..||.|||+.  ..++|||+||+||||+.+|++|+
T Consensus       117 ---egdvwIcME~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~k--L~vIHRDvKPsNiLIn~~GqVKi  190 (282)
T KOG0984|consen  117 ---EGDVWICMELMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSK--LSVIHRDVKPSNILINYDGQVKI  190 (282)
T ss_pred             ---cccEEEeHHHhhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHH--hhhhhccCCcceEEEccCCcEEE
Confidence               6679999999965 887766431 1126789999999999999999999996  79999999999999999999999


Q ss_pred             ccCCccccccccccccccccCccccCCCCCCC
Q 028629          175 SSYNLPLLAENAEKVGHVTPYSGSINPTNSAR  206 (206)
Q Consensus       175 ~df~~a~~~~~~~~~~~~~~~~~y~aPE~~~~  206 (206)
                      ||||.+..+.++--...-.|..-|||||..++
T Consensus       191 CDFGIsG~L~dSiAkt~daGCkpYmaPEri~~  222 (282)
T KOG0984|consen  191 CDFGISGYLVDSIAKTMDAGCKPYMAPERINP  222 (282)
T ss_pred             cccccceeehhhhHHHHhcCCCccCChhhcCc
Confidence            99999988877655555678888999998653

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.93  E-value=2.3e-25  Score=172.00  Aligned_cols=166  Identities=21%  Similarity=0.369  Sum_probs=139.9

Q ss_pred             CcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC--ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           26 FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      |...+.||.|++|.||+|... ++..+++|.+.....  .....+.+|++.+++++|+|++++++++..       ....
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-------~~~~   73 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRH-------KGDL   73 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhcc-------CCCE
Confidence            567789999999999999976 789999999875432  245678889999999999999999998865       5679


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      ++++||+++ ++.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||.+..
T Consensus        74 ~~v~e~~~~-~l~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~p~nili~~~~~~~l~df~~~~~  147 (283)
T cd05118          74 YLVFEFMDT-DLYKLIKDRQ--RGLPESLIKSYLYQLLQGLAFCHS---HGILHRDLKPENLLINTEGVLKLADFGLARS  147 (283)
T ss_pred             EEEEeccCC-CHHHHHHhhc--ccCCHHHHHHHHHHHHHHHHHHHH---CCeeecCcCHHHEEECCCCcEEEeeeeeeEe
Confidence            999999976 8888876643  468999999999999999999999   7999999999999999999999999999987


Q ss_pred             ccccc-cccccccCccccCCCCC
Q 028629          183 AENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       183 ~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ..... ......++..|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~PE~~  170 (283)
T cd05118         148 FGSPVRPYTHYVVTRWYRAPELL  170 (283)
T ss_pred             cCCCcccccCccCcccccCcHHH
Confidence            75543 22234567789999963

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.6e-26  Score=187.54  Aligned_cols=146  Identities=14%  Similarity=0.246  Sum_probs=127.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ..-|..++-||-|+||+|++++.. +...||+|.+.+..   ......+..|-.+|...+.+.|++++-.|.+       
T Consensus       628 KSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQD-------  700 (1034)
T KOG0608|consen  628 KSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQD-------  700 (1034)
T ss_pred             ccceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEecc-------
Confidence            345667788999999999999954 67889999997542   3344567789999999999999999887765       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+++|+||+|++||++..++...   ..+.++....++.++.+|+.+.|.   .|+|||||||.|||||.+|.+||.|||
T Consensus       701 kdnLYFVMdYIPGGDmMSLLIrm---gIFeE~LARFYIAEltcAiesVHk---mGFIHRDiKPDNILIDrdGHIKLTDFG  774 (1034)
T KOG0608|consen  701 KDNLYFVMDYIPGGDMMSLLIRM---GIFEEDLARFYIAELTCAIESVHK---MGFIHRDIKPDNILIDRDGHIKLTDFG  774 (1034)
T ss_pred             CCceEEEEeccCCccHHHHHHHh---ccCHHHHHHHHHHHHHHHHHHHHh---ccceecccCccceEEccCCceeeeecc
Confidence            67899999999999999998876   458889999999999999999999   899999999999999999999999999


Q ss_pred             ccc
Q 028629          179 LPL  181 (206)
Q Consensus       179 ~a~  181 (206)
                      ++.
T Consensus       775 LCT  777 (1034)
T KOG0608|consen  775 LCT  777 (1034)
T ss_pred             ccc
Confidence            994

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.93  E-value=2.7e-25  Score=176.65  Aligned_cols=173  Identities=17%  Similarity=0.302  Sum_probs=139.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccC-----
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD-----   96 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~-----   96 (206)
                      ..+|...+.||.|++|.||+|... ++..|++|.+........+.+.+|++++++++|+|++++++.+.......     
T Consensus         4 ~~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   83 (342)
T cd07854           4 GSRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVG   83 (342)
T ss_pred             CcceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccc
Confidence            478999999999999999999975 78999999997666666677889999999999999999998765411000     


Q ss_pred             --CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec-CCCcee
Q 028629           97 --SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD-QNLVAK  173 (206)
Q Consensus        97 --~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~-~~~~~k  173 (206)
                        ......++++||+++ +|.+++...    .+++..++.++.|++.||.|||+   .+++|+||+|+||+++ +++.++
T Consensus        84 ~~~~~~~~~lv~e~~~~-~L~~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~---~givH~dikp~Nili~~~~~~~k  155 (342)
T cd07854          84 SLTELNSVYIVQEYMET-DLANVLEQG----PLSEEHARLFMYQLLRGLKYIHS---ANVLHRDLKPANVFINTEDLVLK  155 (342)
T ss_pred             cccccceEEEEeecccc-cHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEcCCCceEE
Confidence              012357999999974 888877643    47899999999999999999999   7999999999999998 456889


Q ss_pred             EccCCccccccccc----cccccccCccccCCCC
Q 028629          174 ISSYNLPLLAENAE----KVGHVTPYSGSINPTN  203 (206)
Q Consensus       174 l~df~~a~~~~~~~----~~~~~~~~~~y~aPE~  203 (206)
                      ++|||.+.......    ......++..|+|||.
T Consensus       156 l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  189 (342)
T cd07854         156 IGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRL  189 (342)
T ss_pred             ECCcccceecCCccccccccccccccccccCHHH
Confidence            99999998654321    1122356778999995

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.93  E-value=3.4e-25  Score=175.33  Aligned_cols=170  Identities=16%  Similarity=0.220  Sum_probs=136.4

Q ss_pred             CCcccceeccCcceeEEEEEEe-C--CcEEEEEEeecCC--CccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCC
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-N--GTFIAIRCLKMKK--SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~--~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      +|...+.||+|+||.||++... +  +..||+|.+....  ....+.+.+|+.+++++ +|+||+++++.+....   ..
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~---~~   77 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFP---GN   77 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeecc---cc
Confidence            4788899999999999999975 4  7899999986432  23345678899999999 5999999988654311   12


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ....+++++++. ++|.+++...   ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||
T Consensus        78 ~~~~~~~~e~~~-~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~givH~dlkp~Nili~~~~~~kl~Dfg  150 (332)
T cd07857          78 FNELYLYEELME-ADLHQIIRSG---QPLTDAHFQSFIYQILCGLKYIHS---ANVLHRDLKPGNLLVNADCELKICDFG  150 (332)
T ss_pred             CCcEEEEEeccc-CCHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHeEEcCCCCEEeCcCC
Confidence            345788889886 5899888655   458899999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccc-----cccccccCccccCCCCC
Q 028629          179 LPLLAENAE-----KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~-----~~~~~~~~~~y~aPE~~  204 (206)
                      ++.......     ......++..|+|||..
T Consensus       151 ~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~  181 (332)
T cd07857         151 LARGFSENPGENAGFMTEYVATRWYRAPEIM  181 (332)
T ss_pred             CceecccccccccccccCcccCccccCcHHH
Confidence            998654322     12234678889999953

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.93  E-value=3.6e-25  Score=171.27  Aligned_cols=172  Identities=23%  Similarity=0.343  Sum_probs=137.5

Q ss_pred             CcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC--ccHHHHHHHHHHHhcc---CCCceeeeccccccccccCCCC
Q 028629           26 FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKL---RHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l---~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      |+..+.||.|++|.||++..+ ++..+|+|.+.....  .....+.+|+.+++++   +|+|++++.+.+......  ..
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~--~~   78 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTD--RE   78 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCC--CC
Confidence            567889999999999999987 589999999974432  2234556677776665   699999999988652211  12


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...++++|++.+ +|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||.
T Consensus        79 ~~~~l~~e~~~~-~l~~~l~~~~~-~~l~~~~~~~~~~~i~~al~~LH~---~~i~h~~l~~~nili~~~~~~~l~dfg~  153 (287)
T cd07838          79 LKLTLVFEHVDQ-DLATYLSKCPK-PGLPPETIKDLMRQLLRGVDFLHS---HRIVHRDLKPQNILVTSDGQVKIADFGL  153 (287)
T ss_pred             ceeEEEehhccc-CHHHHHHHccC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCChhhEEEccCCCEEEeccCc
Confidence            348999999975 89888876432 358999999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +.............++..|+|||..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~PE~~  178 (287)
T cd07838         154 ARIYSFEMALTSVVVTLWYRAPEVL  178 (287)
T ss_pred             ceeccCCcccccccccccccChHHh
Confidence            9887655444445677889999964

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.93  E-value=5.6e-25  Score=172.82  Aligned_cols=163  Identities=15%  Similarity=0.280  Sum_probs=136.9

Q ss_pred             CcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC---ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           26 FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      |...+.||+|++|.||+|... ++..+++|.+.....   .....+.+|+++++.++|+|++++.+++.+       ...
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~~   95 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLK-------EHT   95 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEe-------CCE
Confidence            777788999999999999975 788999999875432   233567889999999999999999998865       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++||+.+ ++.+++....  ..+++..++.++.|++.++.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        96 ~~lv~e~~~~-~l~~~l~~~~--~~l~~~~~~~~~~qi~~al~~LH~---~gi~H~dl~p~nili~~~~~~kL~dfg~~~  169 (313)
T cd06633          96 AWLVMEYCLG-SASDLLEVHK--KPLQEVEIAAITHGALQGLAYLHS---HNMIHRDIKAGNILLTEPGQVKLADFGSAS  169 (313)
T ss_pred             EEEEEecCCC-CHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCChhhEEECCCCCEEEeecCCCc
Confidence            8999999965 7777775433  458899999999999999999999   799999999999999999999999999986


Q ss_pred             cccccccccccccCccccCCCCC
Q 028629          182 LAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ....   .....++..|+|||..
T Consensus       170 ~~~~---~~~~~~~~~y~aPE~~  189 (313)
T cd06633         170 KSSP---ANSFVGTPYWMAPEVI  189 (313)
T ss_pred             ccCC---CCCccccccccChhhc
Confidence            5432   2335678889999975

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.93  E-value=3.6e-25  Score=168.07  Aligned_cols=160  Identities=23%  Similarity=0.365  Sum_probs=137.2

Q ss_pred             eccCcceeEEEEEEe-CCcEEEEEEeecCCC---ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEEEe
Q 028629           32 MGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE  107 (206)
Q Consensus        32 lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e  107 (206)
                      ||.|++|.||++... +++.+++|.+.....   .....+..|+.+++++.|+|++++++.+..       ....+++||
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~~~~v~e   73 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQT-------EEKLYLVLE   73 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeec-------CCeeEEEEe
Confidence            689999999999976 688999999875432   234578889999999999999999988754       668999999


Q ss_pred             ecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccccc-
Q 028629          108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENA-  186 (206)
Q Consensus       108 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~-  186 (206)
                      ++++++|.+++...   ..+++..++.++.|++.|+.++|+   .+++|+||+|+||++++++.++|+|||.+...... 
T Consensus        74 ~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~~l~~lh~---~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~  147 (250)
T cd05123          74 YAPGGELFSHLSKE---GRFSEERARFYAAEIVLALEYLHS---LGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEG  147 (250)
T ss_pred             cCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcceEEEcCCCcEEEeecCcceecccCC
Confidence            99999999998765   358899999999999999999999   79999999999999999999999999999876543 


Q ss_pred             ccccccccCccccCCCCC
Q 028629          187 EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       187 ~~~~~~~~~~~y~aPE~~  204 (206)
                      .......++..|++||..
T Consensus       148 ~~~~~~~~~~~~~~Pe~~  165 (250)
T cd05123         148 SRTNTFCGTPEYLAPEVL  165 (250)
T ss_pred             CcccCCcCCccccChHHh
Confidence            234446778889999964

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.93  E-value=3.4e-25  Score=171.88  Aligned_cols=167  Identities=19%  Similarity=0.283  Sum_probs=137.9

Q ss_pred             CCcccceeccCcceeEEEEEEe----CCcEEEEEEeecCC----CccHHHHHHHHHHHhcc-CCCceeeecccccccccc
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK----SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFD   95 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~----~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~   95 (206)
                      +|+..+.||+|++|.||++...    ++..+++|.+....    ....+.+.+|+.++.++ +|+|++++.+.+..    
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~----   76 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQT----   76 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeec----
Confidence            4778899999999999999853    47889999987432    22345678899999999 59999999887754    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                         ....+++|||+++++|.+.+...   ..+++..+..++.|++.+|.|||+   .+++|+||+|+||++++++.++|+
T Consensus        77 ---~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~---~~~~H~dl~p~nil~~~~~~~~l~  147 (288)
T cd05583          77 ---DTKLHLILDYVNGGELFTHLYQR---EHFTESEVRVYIAEIVLALDHLHQ---LGIIYRDIKLENILLDSEGHVVLT  147 (288)
T ss_pred             ---CCEEEEEEecCCCCcHHHHHhhc---CCcCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeEECCCCCEEEE
Confidence               56789999999999999988754   357889999999999999999999   799999999999999999999999


Q ss_pred             cCCccccccccc--cccccccCccccCCCCC
Q 028629          176 SYNLPLLAENAE--KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       176 df~~a~~~~~~~--~~~~~~~~~~y~aPE~~  204 (206)
                      |||++.......  ......++..|+|||..
T Consensus       148 dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~  178 (288)
T cd05583         148 DFGLSKEFLAEEEERAYSFCGTIEYMAPEVI  178 (288)
T ss_pred             ECccccccccccccccccccCCccccCHHHh
Confidence            999987654332  22234578889999964

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.93  E-value=3.2e-25  Score=171.19  Aligned_cols=166  Identities=20%  Similarity=0.368  Sum_probs=139.7

Q ss_pred             CcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           26 FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      |+..+.||.|.+|.||+|... +++.+++|.+....  ....+.+..|+.++++++|+|++++.+++..       ....
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-------~~~~   73 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHT-------ERKL   73 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhc-------CCce
Confidence            566788999999999999976 69999999997553  3345677889999999999999999998865       4679


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      ++++|++++ +|.+++....  ..+++..++.++.|++.+|.+||+   .+++|+||+|+||++++++.++|+|||.+..
T Consensus        74 ~~v~e~~~~-~l~~~i~~~~--~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~  147 (282)
T cd07829          74 YLVFEYCDM-DLKKYLDKRP--GPLSPNLIKSIMYQLLRGLAYCHS---HRILHRDLKPQNILINRDGVLKLADFGLARA  147 (282)
T ss_pred             EEEecCcCc-CHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChheEEEcCCCCEEEecCCcccc
Confidence            999999974 9999987653  358899999999999999999999   7999999999999999999999999999987


Q ss_pred             ccccc-cccccccCccccCCCCC
Q 028629          183 AENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       183 ~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ..... ......++..|+|||..
T Consensus       148 ~~~~~~~~~~~~~~~~~~aPE~~  170 (282)
T cd07829         148 FGIPLRTYTHEVVTLWYRAPEIL  170 (282)
T ss_pred             cCCCccccCccccCcCcCChHHh
Confidence            65432 22223456779999964

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.93  E-value=6.1e-25  Score=174.62  Aligned_cols=170  Identities=15%  Similarity=0.250  Sum_probs=136.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|...+.||+|++|.||+|... ++..||+|.+....  ......+.+|+.+++.+.|+||+++.+++...... ...
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~-~~~   92 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSG-DEF   92 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccC-CCC
Confidence            478999999999999999999965 78999999886432  22345678899999999999999999987542111 112


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...++++||+.. ++.+...     ..+++..+..++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||+
T Consensus        93 ~~~~lv~e~~~~-~l~~~~~-----~~~~~~~~~~~~~qi~~aL~~LH~---~~i~H~dlkp~NIll~~~~~~kL~dfg~  163 (342)
T cd07879          93 QDFYLVMPYMQT-DLQKIMG-----HPLSEDKVQYLVYQMLCGLKYIHS---AGIIHRDLKPGNLAVNEDCELKILDFGL  163 (342)
T ss_pred             ceEEEEeccccc-CHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEeeCCC
Confidence            457899999964 7766543     247889999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +.......  ....++..|+|||..
T Consensus       164 ~~~~~~~~--~~~~~~~~y~aPE~~  186 (342)
T cd07879         164 ARHADAEM--TGYVVTRWYRAPEVI  186 (342)
T ss_pred             CcCCCCCC--CCceeeecccChhhh
Confidence            98654322  224667889999964

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.93  E-value=6e-25  Score=180.74  Aligned_cols=179  Identities=14%  Similarity=0.191  Sum_probs=129.5

Q ss_pred             hcCCcccceeccCcceeEEEEEE-----------------eCCcEEEEEEeecCCCccHHHH--------------HHHH
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRL-----------------KNGTFIAIRCLKMKKSHSTRNF--------------MHHI   71 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~-----------------~~~~~vaiK~~~~~~~~~~~~~--------------~~e~   71 (206)
                      .++|...++||+|+||.||+|..                 ..+..||+|.+........+++              ..|+
T Consensus       144 ~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~  223 (507)
T PLN03224        144 SDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEA  223 (507)
T ss_pred             ccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHH
Confidence            56899999999999999999964                 1346799999875433222233              3366


Q ss_pred             HHHhccCCCce-----eeeccccccccccC-CCCceEEEEEeecCCCCHHHHHhcCCC---------------------C
Q 028629           72 ELISKLRHCHL-----VSALGHCFECYFDD-SSVSRIFLIFEYVPNGTLRSWISEGHA---------------------W  124 (206)
Q Consensus        72 ~~l~~l~h~~i-----~~~~~~~~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~---------------------~  124 (206)
                      ..+.+++|.++     +.+.++|.....++ ...+..++||||+++++|.+++.....                     .
T Consensus       224 ~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~  303 (507)
T PLN03224        224 YMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQ  303 (507)
T ss_pred             HHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhccc
Confidence            66677766554     45556554321111 113568999999999999998864211                     0


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccccccc--cccccCccccCCC
Q 028629          125 QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKV--GHVTPYSGSINPT  202 (206)
Q Consensus       125 ~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~~~--~~~~~~~~y~aPE  202 (206)
                      ..+++..+..++.|++.+|.|+|+   .+++|+||||+||+++.++.++|+|||++.........  .....++.|+|||
T Consensus       304 ~~~~~~~~~~i~~ql~~aL~~lH~---~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE  380 (507)
T PLN03224        304 DKRDINVIKGVMRQVLTGLRKLHR---IGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPE  380 (507)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeChh
Confidence            124567788899999999999999   79999999999999999999999999999765433221  1223467899999


Q ss_pred             CC
Q 028629          203 NS  204 (206)
Q Consensus       203 ~~  204 (206)
                      ..
T Consensus       381 ~l  382 (507)
T PLN03224        381 EL  382 (507)
T ss_pred             hh
Confidence            75

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.93  E-value=3.7e-25  Score=173.63  Aligned_cols=165  Identities=10%  Similarity=0.145  Sum_probs=129.7

Q ss_pred             ccceeccCcceeEEEEEEeCCcEEEEEEeecC--CCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEE
Q 028629           28 TSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMK--KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI  105 (206)
Q Consensus        28 ~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (206)
                      +++.+|.|+++.++++.. ++..||+|.+...  .....+.+.+|+++++.++|+||+++++.+..       ....+++
T Consensus         6 i~~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~-------~~~~~~~   77 (314)
T cd08216           6 IGKCFEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIV-------DSELYVV   77 (314)
T ss_pred             hhHhhcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeec-------CCeEEEE
Confidence            344444444444444433 6999999999754  23445678999999999999999999998865       5678999


Q ss_pred             EeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccc
Q 028629          106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       106 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                      |||+++++|.+++..... ..+++..+..++.|++.||.|||+   .+|+|+||+|+||+++.++.++++||+.+.....
T Consensus        78 ~e~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~LH~---~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~  153 (314)
T cd08216          78 SPLMAYGSCEDLLKTHFP-EGLPELAIAFILKDVLNALDYIHS---KGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIK  153 (314)
T ss_pred             EeccCCCCHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCcceEEEecCCceEEecCccceeecc
Confidence            999999999999876432 357889999999999999999999   7999999999999999999999999998865432


Q ss_pred             cc--------cccccccCccccCCCCC
Q 028629          186 AE--------KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       186 ~~--------~~~~~~~~~~y~aPE~~  204 (206)
                      ..        ......++..|+|||..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~y~aPE~~  180 (314)
T cd08216         154 HGKRQRVVHDFPKSSVKNLPWLSPEVL  180 (314)
T ss_pred             ccccccccccccccccccccccCHHHh
Confidence            21        12334566789999963

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.93  E-value=7.5e-27  Score=172.04  Aligned_cols=173  Identities=12%  Similarity=0.181  Sum_probs=140.9

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC-ccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCCc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-HSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .+.+.+..||.|+||.|.+..++ +|+..|+|++..... ...++++.|.+...+- +.|||++++|+++.       ++
T Consensus        64 ~~Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~-------EG  136 (361)
T KOG1006|consen   64 DNLQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFS-------EG  136 (361)
T ss_pred             chHHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhc-------CC
Confidence            34566778999999999999987 899999999975543 5566788888766555 68999999999987       67


Q ss_pred             eEEEEEeecCCCCHHHHHhcC--CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629          101 RIFLIFEYVPNGTLRSWISEG--HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ..|+.||.++- |+..+...-  -....+++.-+-.+..-...||.||-+.  ..|+|||+||+|||++..|.+|+||||
T Consensus       137 dcWiCMELMd~-SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~--lkiIHRDvKPSNILldr~G~vKLCDFG  213 (361)
T KOG1006|consen  137 DCWICMELMDI-SLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEE--LKIIHRDVKPSNILLDRHGDVKLCDFG  213 (361)
T ss_pred             ceeeeHHHHhh-hHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHH--hhhhhccCChhheEEecCCCEeeeccc
Confidence            89999999954 777665321  0013477887888888889999999986  789999999999999999999999999


Q ss_pred             ccccccccccccccccCccccCCCCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTNSAR  206 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~~~~  206 (206)
                      .+..+..+--...-.|..-|||||..++
T Consensus       214 IcGqLv~SiAkT~daGCrpYmAPERi~p  241 (361)
T KOG1006|consen  214 ICGQLVDSIAKTVDAGCRPYMAPERIDP  241 (361)
T ss_pred             chHhHHHHHHhhhccCCccccChhccCC
Confidence            9987766555555788888999998874

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.93  E-value=3.1e-26  Score=169.56  Aligned_cols=173  Identities=14%  Similarity=0.300  Sum_probs=141.9

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC-CCccHHHHHHHHHHHhccC-CCceeeeccccccccccCCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK-KSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ..+....+..||.|+-|.|++++.+ +|...|+|++... .....++++..+.++.+.. +|.|++.+++|..       
T Consensus        90 dindl~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~-------  162 (391)
T KOG0983|consen   90 DINDLENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFIT-------  162 (391)
T ss_pred             ChHHhhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEee-------
Confidence            3455666778999999999999987 6899999999643 4556678888888887775 8999999999976       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      +...++.||.+.. -+..++..-.  +++++.-+-.+...+..||.||-+.  .+|+|||+||+|||+|+.|++|+||||
T Consensus       163 n~dV~IcMelMs~-C~ekLlkrik--~piPE~ilGk~tva~v~AL~YLKeK--H~viHRDvKPSNILlDe~GniKlCDFG  237 (391)
T KOG0983|consen  163 NTDVFICMELMST-CAEKLLKRIK--GPIPERILGKMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGNIKLCDFG  237 (391)
T ss_pred             CchHHHHHHHHHH-HHHHHHHHhc--CCchHHhhhhhHHHHHHHHHHHHHh--cceeecccCccceEEccCCCEEeeccc
Confidence            4567788888744 4555555433  4688888888899999999999986  699999999999999999999999999


Q ss_pred             ccccccccccccccccCccccCCCCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTNSAR  206 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~~~~  206 (206)
                      ++..+..+.-.....|.+.|||||..++
T Consensus       238 IsGrlvdSkAhtrsAGC~~YMaPERidp  265 (391)
T KOG0983|consen  238 ISGRLVDSKAHTRSAGCAAYMAPERIDP  265 (391)
T ss_pred             ccceeecccccccccCCccccCccccCC
Confidence            9987766655555788889999998864

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.93  E-value=5.2e-25  Score=172.58  Aligned_cols=166  Identities=19%  Similarity=0.330  Sum_probs=138.3

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ..+.|...+.||.|++|.||+|... ++..+++|.+....   .....++.+|+++++.++|+|++++.+++..      
T Consensus        13 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~------   86 (308)
T cd06634          13 PEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR------   86 (308)
T ss_pred             cHHHHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEc------
Confidence            3455888899999999999999976 68899999886432   2234567889999999999999999998865      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       ....++++||+. +++.+.+....  ..+++..+..++.|++.++.|||+   .+++|+||+|+||+++.++.++|+||
T Consensus        87 -~~~~~lv~e~~~-~~l~~~~~~~~--~~l~~~~~~~~~~~l~~~l~~LH~---~~i~H~dl~p~nil~~~~~~~kl~df  159 (308)
T cd06634          87 -EHTAWLVMEYCL-GSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDF  159 (308)
T ss_pred             -CCeeEEEEEccC-CCHHHHHHHcC--CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHhEEECCCCcEEECCc
Confidence             567899999996 47877765432  457899999999999999999999   79999999999999999999999999


Q ss_pred             CccccccccccccccccCccccCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      |++......   ....++..|+|||.
T Consensus       160 g~~~~~~~~---~~~~~~~~y~aPE~  182 (308)
T cd06634         160 GSASIMAPA---NXFVGTPYWMAPEV  182 (308)
T ss_pred             ccceeecCc---ccccCCccccCHHH
Confidence            998766542   23467788999996

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=4.7e-26  Score=178.53  Aligned_cols=171  Identities=14%  Similarity=0.256  Sum_probs=142.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--C-----ccHHHHHHHHHHHhccCCCceeeeccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--S-----HSTRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~-----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   94 (206)
                      ..+|-.+..||.|+|++||++..- ..+.||+|.-...+  .     .-.+...+|..+-+.++||-|+++++++.-   
T Consensus       462 n~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfsl---  538 (775)
T KOG1151|consen  462 NDRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSL---  538 (775)
T ss_pred             HHHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeee---
Confidence            467888999999999999999954 67788898754322  1     112346779999999999999999998753   


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC---Cc
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN---LV  171 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~---~~  171 (206)
                         ..+.+|-|+|||+|.+|..+++..   ..+++.....|+.||+.||.||.+ .+.+|+|-||||.|||+.+.   |.
T Consensus       539 ---DtdsFCTVLEYceGNDLDFYLKQh---klmSEKEARSIiMQiVnAL~YLNE-ikpPIIHYDLKPgNILLv~GtacGe  611 (775)
T KOG1151|consen  539 ---DTDSFCTVLEYCEGNDLDFYLKQH---KLMSEKEARSIIMQIVNALKYLNE-IKPPIIHYDLKPGNILLVNGTACGE  611 (775)
T ss_pred             ---ccccceeeeeecCCCchhHHHHhh---hhhhHHHHHHHHHHHHHHHHHHhc-cCCCeeeeccCCccEEEecCcccce
Confidence               246789999999999999888876   569999999999999999999998 55799999999999999754   78


Q ss_pred             eeEccCCccccccccc--------cccccccCccccCCCC
Q 028629          172 AKISSYNLPLLAENAE--------KVGHVTPYSGSINPTN  203 (206)
Q Consensus       172 ~kl~df~~a~~~~~~~--------~~~~~~~~~~y~aPE~  203 (206)
                      +||.|||++++++..+        ......||.||++||-
T Consensus       612 IKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEc  651 (775)
T KOG1151|consen  612 IKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPEC  651 (775)
T ss_pred             eEeeecchhhhccCCccCcccceeeecccCceeeecCcce
Confidence            9999999999886543        3455789999999994

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.93  E-value=1.3e-24  Score=167.11  Aligned_cols=175  Identities=14%  Similarity=0.281  Sum_probs=134.2

Q ss_pred             CcccceeccCcceeEEEEEEe----CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           26 FDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~----~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      |...+.||+|++|.||+|...    ++..+|+|.+....  ....+++.+|++++++++|+|++++++++...... ...
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~-~~~   79 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAK-GRL   79 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCC-Ccc
Confidence            567889999999999999853    36789999987543  33456788899999999999999999977541110 011


Q ss_pred             ceEEEEEeecCCCCHHHHHhcC---CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEG---HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                      ...+++++|+.+++|..++...   .....+++...+.++.|++.|+.|||+   .+++|+||+|+||++++++.++++|
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~nili~~~~~~kl~d  156 (273)
T cd05074          80 PIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSS---KNFIHRDLAARNCMLNENMTVCVAD  156 (273)
T ss_pred             cceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCEeecccchhhEEEcCCCCEEECc
Confidence            2357888999999998876432   111347889999999999999999999   7999999999999999999999999


Q ss_pred             CCccccccccc---cccccccCccccCCCCC
Q 028629          177 YNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      ||+++......   ......++..|++||..
T Consensus       157 fg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  187 (273)
T cd05074         157 FGLSKKIYSGDYYRQGCASKLPVKWLALESL  187 (273)
T ss_pred             ccccccccCCcceecCCCccCchhhcCHhHH
Confidence            99998654322   11222334568899863

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.93  E-value=4.1e-25  Score=169.59  Aligned_cols=165  Identities=22%  Similarity=0.403  Sum_probs=131.6

Q ss_pred             ceeccCcceeEEEEEEeC-------CcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           30 AFMGEGSKGQMYRGRLKN-------GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~~-------~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +.||+|++|.||+|...+       +..+++|.+.... ......+.+|+.+++.++|+||+++++++..       ...
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~   73 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLL-------NEP   73 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecC-------CCC
Confidence            368999999999998642       2578999886432 2345678899999999999999999998865       456


Q ss_pred             EEEEEeecCCCCHHHHHhcCC----CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC-----ce
Q 028629          102 IFLIFEYVPNGTLRSWISEGH----AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-----VA  172 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~-----~~  172 (206)
                      .++++||+++++|.+++....    ....+++..++.++.|++.||.|||+   .+++|+||+|+||++++++     .+
T Consensus        74 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dl~p~nil~~~~~~~~~~~~  150 (269)
T cd05044          74 QYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQ---MHFIHRDLAARNCLVSEKGYDADRVV  150 (269)
T ss_pred             eEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHh---CCcccCCCChheEEEecCCCCCCcce
Confidence            899999999999999986421    11347889999999999999999999   7999999999999999877     89


Q ss_pred             eEccCCccccccccc---cccccccCccccCCCCC
Q 028629          173 KISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       173 kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      +++|||++.......   .......+..|+|||..
T Consensus       151 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  185 (269)
T cd05044         151 KIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESL  185 (269)
T ss_pred             EECCcccccccccccccccCcccCCCccccCHHHH
Confidence            999999997553321   11222345679999964

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.93  E-value=7.6e-25  Score=173.09  Aligned_cols=164  Identities=16%  Similarity=0.270  Sum_probs=131.0

Q ss_pred             ceeccC--cceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEE
Q 028629           30 AFMGEG--SKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        30 ~~lg~g--~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      ..||.|  ++|.||++... +++.||+|.+....  ....+.+.+|+.+++.++|+||+++++++..       ++..++
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~-------~~~~~~   76 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTT-------GSWLWV   76 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEec-------CCceEE
Confidence            345666  88999999975 79999999987543  2234678889999999999999999998865       567899


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      ++||+.++++.+++..... ..+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.++++||+.+....
T Consensus        77 v~e~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~qi~~aL~~lH~---~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~  152 (328)
T cd08226          77 ISPFMAYGSANSLLKTYFP-EGMSEALIGNILFGALRGLNYLHQ---NGYIHRNIKASHILISGDGLVSLSGLSHLYSLV  152 (328)
T ss_pred             EEecccCCCHHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEeCCCcEEEechHHHhhhh
Confidence            9999999999998876432 458899999999999999999999   799999999999999999999999997654332


Q ss_pred             cccc--------ccccccCccccCCCCC
Q 028629          185 NAEK--------VGHVTPYSGSINPTNS  204 (206)
Q Consensus       185 ~~~~--------~~~~~~~~~y~aPE~~  204 (206)
                      ....        .....++..|+|||..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~  180 (328)
T cd08226         153 RNGQKAKVVYDFPQFSTSVLPWLSPELL  180 (328)
T ss_pred             ccCccccccccccccccCccCccChhhh
Confidence            1111        1112334569999974

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.93  E-value=5.7e-25  Score=174.85  Aligned_cols=171  Identities=15%  Similarity=0.249  Sum_probs=139.8

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ..++|...+.||+|++|.||+|... ++..|++|.+....  ....+.+.+|+.++++++|+|++++.+++...... ..
T Consensus        13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~-~~   91 (343)
T cd07851          13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSL-ED   91 (343)
T ss_pred             ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccc-cc
Confidence            4678999999999999999999976 68899999886432  22345677899999999999999998876541110 11


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ....++++|++ +++|.+++..    ..+++..++.++.|++.|+.|||+   .+++|+||+|+||++++++.++|+|||
T Consensus        92 ~~~~~lv~e~~-~~~L~~~~~~----~~l~~~~~~~~~~ql~~aL~~LH~---~gi~H~dlkp~Nill~~~~~~kL~dfg  163 (343)
T cd07851          92 FQDVYLVTHLM-GADLNNIVKC----QKLSDDHIQFLVYQILRGLKYIHS---AGIIHRDLKPSNIAVNEDCELKILDFG  163 (343)
T ss_pred             cccEEEEEecC-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEECCCCCEEEcccc
Confidence            23589999998 5699998875    358999999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccccccccccCccccCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      ++.......  ....++..|+|||.
T Consensus       164 ~~~~~~~~~--~~~~~~~~y~aPE~  186 (343)
T cd07851         164 LARHTDDEM--TGYVATRWYRAPEI  186 (343)
T ss_pred             ccccccccc--cCCcccccccCHHH
Confidence            998765432  23466778999995

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=2.9e-25  Score=177.57  Aligned_cols=167  Identities=11%  Similarity=0.161  Sum_probs=138.6

Q ss_pred             cCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCC--CccHHHHHHHHHHHhccC-CCceeeeccccccccccCCCCc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ..|++++.||+||.+.||++...+...||+|.+....  .....-+.+|+.+|.+++ |.+|++++++-..       ++
T Consensus       361 ~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~-------d~  433 (677)
T KOG0596|consen  361 REYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVT-------DG  433 (677)
T ss_pred             chhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeecc-------Cc
Confidence            4689999999999999999998766778877765432  344567999999999996 8999999998765       78


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ++|+|||+-+ .+|.+++.....  ..+...+..+..|++.++.++|+   .||+|.||||.|+|+- .|.+||+|||+|
T Consensus       434 ~lYmvmE~Gd-~DL~kiL~k~~~--~~~~~~lk~ywkqML~aV~~IH~---~gIVHSDLKPANFLlV-kG~LKLIDFGIA  506 (677)
T KOG0596|consen  434 YLYMVMECGD-IDLNKILKKKKS--IDPDWFLKFYWKQMLLAVKTIHQ---HGIVHSDLKPANFLLV-KGRLKLIDFGIA  506 (677)
T ss_pred             eEEEEeeccc-ccHHHHHHhccC--CCchHHHHHHHHHHHHHHHHHHH---hceeecCCCcccEEEE-eeeEEeeeechh
Confidence            9999999774 499999987643  23333788899999999999999   8999999999999997 679999999999


Q ss_pred             cccccccc---ccccccCccccCCCCC
Q 028629          181 LLAENAEK---VGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~~---~~~~~~~~~y~aPE~~  204 (206)
                      ..+.++.+   .-.-+||..||+||..
T Consensus       507 ~aI~~DTTsI~kdsQvGT~NYMsPEAl  533 (677)
T KOG0596|consen  507 NAIQPDTTSIVKDSQVGTVNYMSPEAL  533 (677)
T ss_pred             cccCccccceeeccccCcccccCHHHH
Confidence            98876542   2235899999999964

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.92  E-value=1.7e-24  Score=165.50  Aligned_cols=169  Identities=21%  Similarity=0.266  Sum_probs=133.7

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC-----CCccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK-----KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~-----~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      +|...+.||+|++|.||++... .+..+++|.++..     .......+..|+.++++++|+|++++++.+..       
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------   73 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLE-------   73 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhc-------
Confidence            5888899999999999999865 4445555554421     12233456678999999999999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcC-CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEG-HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      ....++++||+++++|.+++... .....+++..++.++.|++.|+.|||+   .+++|+||+|+||++++ +.++|+||
T Consensus        74 ~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~h~~l~~~nili~~-~~~~l~d~  149 (260)
T cd08222          74 RDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQ---RRILHRDLKAKNIFLKN-NLLKIGDF  149 (260)
T ss_pred             CCceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHH---cCccccCCChhheEeec-CCEeeccc
Confidence            55789999999999999887642 112468999999999999999999999   79999999999999975 56999999


Q ss_pred             Ccccccccc-ccccccccCccccCCCCC
Q 028629          178 NLPLLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      |++...... .......++..|+|||+.
T Consensus       150 g~~~~~~~~~~~~~~~~~~~~~~~pe~~  177 (260)
T cd08222         150 GVSRLLMGSCDLATTFTGTPYYMSPEAL  177 (260)
T ss_pred             CceeecCCCcccccCCCCCcCccCHHHH
Confidence            999766433 233345677889999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.92  E-value=4e-24  Score=161.61  Aligned_cols=150  Identities=15%  Similarity=0.103  Sum_probs=123.4

Q ss_pred             CcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEEEeecCCCC
Q 028629           35 GSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT  113 (206)
Q Consensus        35 g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~  113 (206)
                      |.++.||++... +++.+|+|.+....     ....|...+....|+|++++++.+..       ....+++|||+++++
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~lv~e~~~~~~   71 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS-----EYSRERLTIIPHCVPNMVCLHKYIVS-------EDSVFLVLQHAEGGK   71 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh-----hhhhHHHHHHhcCCCceeehhhheec-------CCeEEEEEecCCCCC
Confidence            889999999976 78999999997442     12234444555579999999998765       567999999999999


Q ss_pred             HHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccccccccccc
Q 028629          114 LRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT  193 (206)
Q Consensus       114 L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~~~~~~~  193 (206)
                      |.+++...   ..+++..+..++.|++.||.|||+   .+++|+||+|+||++++++.++++|||.+.......  ....
T Consensus        72 L~~~l~~~---~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~--~~~~  143 (237)
T cd05576          72 LWSHISKF---LNIPEECVKRWAAEMVVALDALHR---EGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSC--DGEA  143 (237)
T ss_pred             HHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHEEEcCCCCEEEecccchhcccccc--ccCC
Confidence            99988765   358899999999999999999999   799999999999999999999999999887655432  2234


Q ss_pred             cCccccCCCCC
Q 028629          194 PYSGSINPTNS  204 (206)
Q Consensus       194 ~~~~y~aPE~~  204 (206)
                      ++..|+|||..
T Consensus       144 ~~~~y~aPE~~  154 (237)
T cd05576         144 VENMYCAPEVG  154 (237)
T ss_pred             cCccccCCccc
Confidence            56679999975

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.92  E-value=1.7e-24  Score=181.48  Aligned_cols=174  Identities=12%  Similarity=0.099  Sum_probs=120.1

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-C----CcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-N----GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~----~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      ..++|...+.||+|+||.||+|... +    +..||+|.+.....  .+...++  .+....+.++..+...+..... .
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~--~e~~~~e--~l~~~~~~~~~~~~~~~~~~~~-~  204 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA--VEIWMNE--RVRRACPNSCADFVYGFLEPVS-S  204 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch--hHHHHHH--HHHhhchhhHHHHHHhhhcccc-c
Confidence            4678999999999999999999976 5    78999998763321  1111111  1112222223222222211111 1


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCC-----------------cccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCC
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAW-----------------QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNL  159 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~-----------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl  159 (206)
                      ......++++||+.+++|.+++......                 .......+..++.|++.||.|||+   .+|+||||
T Consensus       205 ~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~---~gIiHRDL  281 (566)
T PLN03225        205 KKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHS---TGIVHRDV  281 (566)
T ss_pred             ccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHH---CCEEeCcC
Confidence            2356789999999999999988653210                 011233466799999999999999   79999999


Q ss_pred             ccccEEecC-CCceeEccCCcccccccc--ccccccccCccccCCCC
Q 028629          160 KITDILLDQ-NLVAKISSYNLPLLAENA--EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       160 ~p~nil~~~-~~~~kl~df~~a~~~~~~--~~~~~~~~~~~y~aPE~  203 (206)
                      ||+|||+++ ++.+||+|||+|+.....  .......+++.|+|||.
T Consensus       282 KP~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~  328 (566)
T PLN03225        282 KPQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQ  328 (566)
T ss_pred             CHHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHH
Confidence            999999995 579999999999865332  23344678889999995

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=7.7e-27  Score=171.01  Aligned_cols=175  Identities=15%  Similarity=0.344  Sum_probs=141.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeec--CCCccHHHHHHHHHHHhccCCCceeeeccccccccccCC-C
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKM--KKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS-S   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~-~   98 (206)
                      .+.|.-...+|+|+||+||+|+.. +|+.||+|.+-.  ++...-....+|+.+|..++|+|++.+.+.|...+.... .
T Consensus        16 ~~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~   95 (376)
T KOG0669|consen   16 VSKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRD   95 (376)
T ss_pred             chHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccc
Confidence            456788889999999999999976 688888876643  344444567789999999999999999999876442221 2


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ...+++||++|+. +|.-++....  ..++..++..++.+++.||.|+|+   ..|+|||+||+|+||+.++.+||+|||
T Consensus        96 r~t~ylVf~~ceh-DLaGlLsn~~--vr~sls~Ikk~Mk~Lm~GL~~iHr---~kilHRDmKaaNvLIt~dgilklADFG  169 (376)
T KOG0669|consen   96 RATFYLVFDFCEH-DLAGLLSNRK--VRFSLSEIKKVMKGLMNGLYYIHR---NKILHRDMKAANVLITKDGILKLADFG  169 (376)
T ss_pred             cceeeeeHHHhhh-hHHHHhcCcc--ccccHHHHHHHHHHHHHHHHHHHH---hhHHhhcccHhhEEEcCCceEEeeccc
Confidence            4568999999977 8888887653  568889999999999999999999   699999999999999999999999999


Q ss_pred             ccccccccc-----cccccccCccccCCCC
Q 028629          179 LPLLAENAE-----KVGHVTPYSGSINPTN  203 (206)
Q Consensus       179 ~a~~~~~~~-----~~~~~~~~~~y~aPE~  203 (206)
                      +++.+..+.     ......-|.+|+.||.
T Consensus       170 lar~fs~~~n~~kprytnrvvTLwYrppEl  199 (376)
T KOG0669|consen  170 LARAFSTSKNVVKPRYTNRVVTLWYRPPEL  199 (376)
T ss_pred             cccceecccccCCCCcccceeeeecCCHHH
Confidence            997654321     1223456788999985

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=3.5e-24  Score=190.51  Aligned_cols=162  Identities=25%  Similarity=0.442  Sum_probs=131.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ...+...+.||+|+||.||+|... ++..||+|.+.......    ..|++.+++++||||+++++++.+       ...
T Consensus       689 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~----~~~~~~l~~l~HpnIv~~~~~~~~-------~~~  757 (968)
T PLN00113        689 LSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSIP----SSEIADMGKLQHPNIVKLIGLCRS-------EKG  757 (968)
T ss_pred             HhhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCcccc----HHHHHHHhhCCCCCcceEEEEEEc-------CCC
Confidence            456788889999999999999975 78999999886433221    246888999999999999999865       456


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++||||+++++|.+++..      ++|..+..++.|++.|+.|||.....+++|||+||+||+++.++.+++. ++.+.
T Consensus       758 ~~lv~Ey~~~g~L~~~l~~------l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~  830 (968)
T PLN00113        758 AYLIHEYIEGKNLSEVLRN------LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPG  830 (968)
T ss_pred             CEEEEeCCCCCcHHHHHhc------CCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-ecccc
Confidence            8999999999999999853      7889999999999999999995333799999999999999988887765 55554


Q ss_pred             cccccccccccccCccccCCCCCC
Q 028629          182 LAENAEKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       182 ~~~~~~~~~~~~~~~~y~aPE~~~  205 (206)
                      .....   ....++.+|+|||+..
T Consensus       831 ~~~~~---~~~~~t~~y~aPE~~~  851 (968)
T PLN00113        831 LLCTD---TKCFISSAYVAPETRE  851 (968)
T ss_pred             ccccC---CCccccccccCccccc
Confidence            33221   2236778999999753

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.92  E-value=3.8e-24  Score=166.68  Aligned_cols=172  Identities=10%  Similarity=0.088  Sum_probs=123.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-C---CcEEEEEEeecCCCccHH-----------HHHHHHHHHhccCCCceeeecc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-N---GTFIAIRCLKMKKSHSTR-----------NFMHHIELISKLRHCHLVSALG   87 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~---~~~vaiK~~~~~~~~~~~-----------~~~~e~~~l~~l~h~~i~~~~~   87 (206)
                      .++|.+.+.||+|+||.||+|... +   +..+++|...........           ....+...+..+.|++++++++
T Consensus        11 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~   90 (294)
T PHA02882         11 GKEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYG   90 (294)
T ss_pred             CCceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEE
Confidence            468999999999999999999975 3   456667754433221111           1122334556678999999988


Q ss_pred             ccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec
Q 028629           88 HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD  167 (206)
Q Consensus        88 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~  167 (206)
                      .+....   ......+++++++.. ++.+.+...   ...++..+..++.|++.||.|||+   .+++||||||+|||++
T Consensus        91 ~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~---~~iiHrDiKp~Nill~  160 (294)
T PHA02882         91 CGSFKR---CRMYYRFILLEKLVE-NTKEIFKRI---KCKNKKLIKNIMKDMLTTLEYIHE---HGISHGDIKPENIMVD  160 (294)
T ss_pred             eeeEec---CCceEEEEEEehhcc-CHHHHHHhh---ccCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEc
Confidence            654311   112245677787744 666666543   235678889999999999999999   7999999999999999


Q ss_pred             CCCceeEccCCccccccccc--------cccccccCccccCCCCC
Q 028629          168 QNLVAKISSYNLPLLAENAE--------KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       168 ~~~~~kl~df~~a~~~~~~~--------~~~~~~~~~~y~aPE~~  204 (206)
                      +++.++|+|||+|+......        ......+|..|+|||..
T Consensus       161 ~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~  205 (294)
T PHA02882        161 GNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAH  205 (294)
T ss_pred             CCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHh
Confidence            99999999999997653211        12234688999999964

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.91  E-value=3.6e-24  Score=156.39  Aligned_cols=142  Identities=11%  Similarity=0.116  Sum_probs=108.2

Q ss_pred             cceeccCcceeEEEEEEeCCcEEEEEEeecCCCc--c------------------------HHHHHHHHHHHhccCCCce
Q 028629           29 SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH--S------------------------TRNFMHHIELISKLRHCHL   82 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~--~------------------------~~~~~~e~~~l~~l~h~~i   82 (206)
                      ...||+|++|.||+|...+|+.||+|+++.....  .                        ......|++.+.++.++++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            4579999999999999778999999999754211  1                        0122348999999987776


Q ss_pred             eeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHH-hcCCCCceeccCCcc
Q 028629           83 VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFL-HTGIVPGVFSNNLKI  161 (206)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l-H~~~~~~i~h~dl~p  161 (206)
                      ........         ...+++|||++++++.......   ..++......++.|++.+|.++ |+   .+++||||||
T Consensus        82 ~~p~~~~~---------~~~~iVmE~i~g~~l~~~~~~~---~~~~~~~~~~i~~qi~~~L~~l~H~---~giiHrDlkP  146 (190)
T cd05147          82 PCPEPILL---------KSHVLVMEFIGDDGWAAPRLKD---APLSESKARELYLQVIQIMRILYQD---CRLVHADLSE  146 (190)
T ss_pred             CCCcEEEe---------cCCEEEEEEeCCCCCcchhhhc---CCCCHHHHHHHHHHHHHHHHHHHHh---CCcccCCCCH
Confidence            43322211         1237999999887665443222   3578899999999999999999 67   7999999999


Q ss_pred             ccEEecCCCceeEccCCcccccccc
Q 028629          162 TDILLDQNLVAKISSYNLPLLAENA  186 (206)
Q Consensus       162 ~nil~~~~~~~kl~df~~a~~~~~~  186 (206)
                      +||+++ ++.++|+|||+|...+.+
T Consensus       147 ~NIli~-~~~v~LiDFG~a~~~~~~  170 (190)
T cd05147         147 YNLLYH-DGKLYIIDVSQSVEHDHP  170 (190)
T ss_pred             HHEEEE-CCcEEEEEccccccCCCc
Confidence            999998 478999999999865543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.91  E-value=8.5e-26  Score=183.84  Aligned_cols=171  Identities=18%  Similarity=0.358  Sum_probs=155.2

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .+..+|...+.+|+|++|.||+++.. +++..|+|.++.+.....+-+.+|+-+++.++|+||+.+++-++.       .
T Consensus        12 nP~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr-------~   84 (829)
T KOG0576|consen   12 NPQDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLR-------R   84 (829)
T ss_pred             CCccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhh-------h
Confidence            45678999999999999999999964 899999999999888888888889999999999999999998865       6


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ..+|+.||||.+|+|.+.....   .++++.++...++..++++.|||+   .+-+|||||=.||++++.+.+|++|||.
T Consensus        85 dklwicMEycgggslQdiy~~T---gplselqiayvcRetl~gl~ylhs---~gk~hRdiKGanilltd~gDvklaDfgv  158 (829)
T KOG0576|consen   85 DKLWICMEYCGGGSLQDIYHVT---GPLSELQIAYVCRETLQGLKYLHS---QGKIHRDIKGANILLTDEGDVKLADFGV  158 (829)
T ss_pred             cCcEEEEEecCCCcccceeeec---ccchhHHHHHHHhhhhccchhhhc---CCcccccccccceeecccCceeecccCc
Confidence            7899999999999999988766   579999999999999999999999   8999999999999999999999999999


Q ss_pred             ccccccc-ccccccccCccccCCCCC
Q 028629          180 PLLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      +..++.. .+.....||+.+||||..
T Consensus       159 saqitati~KrksfiGtpywmapEva  184 (829)
T KOG0576|consen  159 SAQITATIAKRKSFIGTPYWMAPEVA  184 (829)
T ss_pred             hhhhhhhhhhhhcccCCccccchhHH
Confidence            9877644 466678999999999964

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.91  E-value=2.1e-24  Score=165.80  Aligned_cols=168  Identities=15%  Similarity=0.224  Sum_probs=137.5

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccC-CC-----ceeeeccccccccc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HC-----HLVSALGHCFECYF   94 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~-----~i~~~~~~~~~~~~   94 (206)
                      ..++|.+...+|+|+||.|..|..+ .+..||+|+++ ....-.+..+-|+++++++. +.     -++++.+||-.   
T Consensus        87 l~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik-~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdy---  162 (415)
T KOG0671|consen   87 LTNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIK-NVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDY---  162 (415)
T ss_pred             cccceehhhhhcCCcccceEEEeecCCCceehHHHHH-HHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhc---
Confidence            3789999999999999999999976 67899999886 32334455667999999993 22     34666666633   


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC------
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ------  168 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~------  168 (206)
                          .+..|+|+|.+ |.|+.+++..++- .+++...+..++.|++.++.+||+   ..++|.||||+|||+.+      
T Consensus       163 ----rghiCivfell-G~S~~dFlk~N~y-~~fpi~~ir~m~~QL~~sv~fLh~---~kl~HTDLKPENILfvss~~~~~  233 (415)
T KOG0671|consen  163 ----RGHICIVFELL-GLSTFDFLKENNY-IPFPIDHIRHMGYQLLESVAFLHD---LKLTHTDLKPENILFVSSEYFKT  233 (415)
T ss_pred             ----cCceEEEEecc-ChhHHHHhccCCc-cccchHHHHHHHHHHHHHHHHHHh---cceeecCCChheEEEeccceEEE
Confidence                67899999988 6699999987654 779999999999999999999999   79999999999999932      


Q ss_pred             --------------CCceeEccCCccccccccccccccccCccccCCCCC
Q 028629          169 --------------NLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       169 --------------~~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                                    +..++|+|||.|.......  ..+..|..|+|||-.
T Consensus       234 ~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~h--s~iVsTRHYRAPEVi  281 (415)
T KOG0671|consen  234 YNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHH--STIVSTRHYRAPEVI  281 (415)
T ss_pred             eccCCccceeccCCCcceEEEecCCcceeccCc--ceeeeccccCCchhe
Confidence                          2357999999998876644  557899999999964

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=1.7e-26  Score=171.13  Aligned_cols=173  Identities=17%  Similarity=0.274  Sum_probs=137.7

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeec--CCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKM--KKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .+.+..+.||-|+||.||.+..+ +|+.|++|.+..  ......+.+.+|+..|.-++|.|++...+...-...+  .-.
T Consensus        53 ~Di~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~d--fFq  130 (449)
T KOG0664|consen   53 QDIQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPS--FFQ  130 (449)
T ss_pred             ccCCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCch--HHH
Confidence            45677889999999999999965 899999998753  2345567899999999999999998877755321110  013


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      .+|+++|.+.. +|-.++-.-   +.++.+.+.-+..||+.||.|||+   .+|.||||||.|.|+++|..+||||||++
T Consensus       131 EiYV~TELmQS-DLHKIIVSP---Q~Ls~DHvKVFlYQILRGLKYLHs---A~ILHRDIKPGNLLVNSNCvLKICDFGLA  203 (449)
T KOG0664|consen  131 ELYVLTELMQS-DLHKIIVSP---QALTPDHVKVFVYQILRGLKYLHT---ANILHRDIKPGNLLVNSNCILKICDFGLA  203 (449)
T ss_pred             HHHHHHHHHHh-hhhheeccC---CCCCcchhhhhHHHHHhhhHHHhh---cchhhccCCCccEEeccCceEEecccccc
Confidence            46777787744 666666544   679999999999999999999999   89999999999999999999999999999


Q ss_pred             ccccccccccc--cccCccccCCCCCC
Q 028629          181 LLAENAEKVGH--VTPYSGSINPTNSA  205 (206)
Q Consensus       181 ~~~~~~~~~~~--~~~~~~y~aPE~~~  205 (206)
                      +..+.+...++  ..-|..|+|||-.+
T Consensus       204 Rvee~d~~~hMTqEVVTQYYRAPEiLM  230 (449)
T KOG0664|consen  204 RTWDQRDRLNMTHEVVTQYYRAPELLM  230 (449)
T ss_pred             cccchhhhhhhHHHHHHHHhccHHHhh
Confidence            98876654333  46677899999643

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.91  E-value=8.1e-25  Score=158.42  Aligned_cols=165  Identities=16%  Similarity=0.246  Sum_probs=140.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccC-CCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ..+|++.+++|.|.+++||.|..- +.+.++||.++.   ...+.+.+|+.+|+.+. |+||+++.++..++     ...
T Consensus        37 ~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKP---VkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp-----~Sk  108 (338)
T KOG0668|consen   37 QDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKP---VKKKKIKREIKILQNLRGGPNIIKLLDIVKDP-----ESK  108 (338)
T ss_pred             cchHHHHHHHcCccHhhHhcccccCCCceEEEeeech---HHHHHHHHHHHHHHhccCCCCeeehhhhhcCc-----ccc
Confidence            468999999999999999999954 788999999973   33467888999999997 99999999998763     345


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC-CCceeEccCCc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-NLVAKISSYNL  179 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~-~~~~kl~df~~  179 (206)
                      .+.+++|++.+.+...+..      .++.-.+..++.+++.||.|+|+   +||.|||+||.|++|+. .-.++++|+|+
T Consensus       109 tpaLiFE~v~n~Dfk~ly~------tl~d~dIryY~~elLkALdyCHS---~GImHRDVKPhNvmIdh~~rkLrlIDWGL  179 (338)
T KOG0668|consen  109 TPSLIFEYVNNTDFKQLYP------TLTDYDIRYYIYELLKALDYCHS---MGIMHRDVKPHNVMIDHELRKLRLIDWGL  179 (338)
T ss_pred             CchhHhhhhccccHHHHhh------hhchhhHHHHHHHHHHHHhHHHh---cCcccccCCcceeeechhhceeeeeecch
Confidence            6789999998877776653      47777888999999999999999   89999999999999995 46899999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |...-+...-+...-+..|-.||..
T Consensus       180 AEFYHp~~eYnVRVASRyfKGPELL  204 (338)
T KOG0668|consen  180 AEFYHPGKEYNVRVASRYFKGPELL  204 (338)
T ss_pred             HhhcCCCceeeeeeehhhcCCchhe
Confidence            9988777666667777788888853

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.91  E-value=4.6e-23  Score=153.71  Aligned_cols=167  Identities=22%  Similarity=0.417  Sum_probs=142.8

Q ss_pred             CcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc-cHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEE
Q 028629           26 FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~  103 (206)
                      |...+.||.|++|.||++... ++..+++|.+...... ..+.+.+|++.+++++|+|++++++.+..       ....+
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~-------~~~~~   73 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFED-------PEPLY   73 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeec-------CCceE
Confidence            567788999999999999987 5889999999865544 56788899999999999999999998754       46789


Q ss_pred             EEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccc
Q 028629          104 LIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  183 (206)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~  183 (206)
                      +++|++++++|.+++.....  .+++..++.++.+++.++.++|+   .+++|+|++|.||+++.++.++|+|||.+...
T Consensus        74 ~v~e~~~~~~L~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~  148 (225)
T smart00221       74 LVMEYCEGGDLFDYLRKKGG--KLSEEEARFYLRQILEALEYLHS---LGIVHRDLKPENILLGMDGLVKLADFGLARFI  148 (225)
T ss_pred             EEEeccCCCCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeeCceeeEe
Confidence            99999999999999987531  17889999999999999999999   79999999999999999999999999999877


Q ss_pred             cccc--cccccccCccccCCCCC
Q 028629          184 ENAE--KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       184 ~~~~--~~~~~~~~~~y~aPE~~  204 (206)
                      ....  ......++..|++||..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~pe~~  171 (225)
T smart00221      149 HRDLAALLKTVKGTPFYLAPEVL  171 (225)
T ss_pred             cCcccccccceeccCCcCCHhHh
Confidence            6543  23345677789999964

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=1.7e-25  Score=177.47  Aligned_cols=168  Identities=15%  Similarity=0.230  Sum_probs=148.1

Q ss_pred             cCCcccceeccCcceeEEEEEEeCC-cEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLKNG-TFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~~~-~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++..+.-||-|+||.|=++...+. ..+|+|.+++.-   ....+.+..|-.+|..++.+.|+++|..|.+       .
T Consensus       420 ~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd-------~  492 (732)
T KOG0614|consen  420 SDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRD-------S  492 (732)
T ss_pred             hhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhcc-------c
Confidence            5666777799999999999987633 348889887542   3445668889999999999999999998866       6


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      .+.|++||-|-||.+...+..+   ..++..+...++..++.|+.|||+   .+|+.|||||+|.+++.+|-+||.|||+
T Consensus       493 kyvYmLmEaClGGElWTiLrdR---g~Fdd~tarF~~acv~EAfeYLH~---k~iIYRDLKPENllLd~~Gy~KLVDFGF  566 (732)
T KOG0614|consen  493 KYVYMLMEACLGGELWTILRDR---GSFDDYTARFYVACVLEAFEYLHR---KGIIYRDLKPENLLLDNRGYLKLVDFGF  566 (732)
T ss_pred             hhhhhhHHhhcCchhhhhhhhc---CCcccchhhhhHHHHHHHHHHHHh---cCceeccCChhheeeccCCceEEeehhh
Confidence            7899999999999999999877   458888999999999999999999   8999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |+.+.++.+.-..+||+.|+|||-.
T Consensus       567 AKki~~g~KTwTFcGTpEYVAPEII  591 (732)
T KOG0614|consen  567 AKKIGSGRKTWTFCGTPEYVAPEII  591 (732)
T ss_pred             HHHhccCCceeeecCCcccccchhh
Confidence            9999999999999999999999953

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.90  E-value=2.5e-24  Score=176.42  Aligned_cols=169  Identities=22%  Similarity=0.391  Sum_probs=141.8

Q ss_pred             cCCcccceeccCcceeEEEEEEe--CCc--EEEEEEeecCCCc-cHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK--NGT--FIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~--~~~--~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .+.+..+.||+|.||.|++|.|.  +|+  .||+|.+...... ...+|.+|+..|.+++|+|++++||+.++       
T Consensus       110 e~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~-------  182 (1039)
T KOG0199|consen  110 EQIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD-------  182 (1039)
T ss_pred             HHHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc-------
Confidence            45667888999999999999986  454  5799999766543 67899999999999999999999999974       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                       ..+.+|+|.++.|+|.+++..... ..+-...+.+++.||+.||.||..   ++++||||-..|+++...-.+||+|||
T Consensus       183 -qp~mMV~ELaplGSLldrLrka~~-~~llv~~Lcdya~QiA~aM~YLes---krlvHRDLAARNlllasprtVKI~DFG  257 (1039)
T KOG0199|consen  183 -QPAMMVFELAPLGSLLDRLRKAKK-AILLVSRLCDYAMQIAKAMQYLES---KRLVHRDLAARNLLLASPRTVKICDFG  257 (1039)
T ss_pred             -chhhHHhhhcccchHHHHHhhccc-cceeHHHHHHHHHHHHHHHHHHhh---hhhhhhhhhhhhheecccceeeeeccc
Confidence             458899999999999999988433 567788999999999999999999   899999999999999999999999999


Q ss_pred             cccccccccccccccc----CccccCCCCC
Q 028629          179 LPLLAENAEKVGHVTP----YSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~----~~~y~aPE~~  204 (206)
                      +.+-+...+....+.+    .+.+.|||..
T Consensus       258 LmRaLg~ned~Yvm~p~rkvPfAWCaPEsL  287 (1039)
T KOG0199|consen  258 LMRALGENEDMYVMAPQRKVPFAWCAPESL  287 (1039)
T ss_pred             ceeccCCCCcceEecCCCcCcccccCHhHh
Confidence            9997766543332222    2347888864

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.90  E-value=5.4e-23  Score=154.68  Aligned_cols=156  Identities=22%  Similarity=0.381  Sum_probs=136.2

Q ss_pred             cceeEEEEEEe-CCcEEEEEEeecCCCcc-HHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEEEeecCCCC
Q 028629           36 SKGQMYRGRLK-NGTFIAIRCLKMKKSHS-TRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGT  113 (206)
Q Consensus        36 ~~g~v~~~~~~-~~~~vaiK~~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~  113 (206)
                      ++|.||+|... ++..+++|.+....... .+.+.+|++.+++++|+|++++.+.+..       ....++++|++.+++
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-------~~~~~l~~e~~~~~~   73 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFED-------EDKLYLVMEYCDGGD   73 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheee-------CCEEEEEEeCCCCCC
Confidence            57899999987 58999999997654444 6789999999999999999999998865       467899999999999


Q ss_pred             HHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccccccccccc
Q 028629          114 LRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT  193 (206)
Q Consensus       114 L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~~~~~~~  193 (206)
                      |.+++....   .+++..++.++.+++.++.+||+   .+++|+||+|.||++++++.++++|||.+.............
T Consensus        74 L~~~~~~~~---~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~  147 (244)
T smart00220       74 LFDLLKKRG---RLSEDEARFYARQILSALEYLHS---NGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTFV  147 (244)
T ss_pred             HHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHH---cCeecCCcCHHHeEECCCCcEEEccccceeeecccccccccc
Confidence            999987653   37899999999999999999999   799999999999999999999999999999887654555567


Q ss_pred             cCccccCCCCC
Q 028629          194 PYSGSINPTNS  204 (206)
Q Consensus       194 ~~~~y~aPE~~  204 (206)
                      ++..|++||..
T Consensus       148 ~~~~~~~pE~~  158 (244)
T smart00220      148 GTPEYMAPEVL  158 (244)
T ss_pred             CCcCCCCHHHH
Confidence            88899999964

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=6.1e-24  Score=161.75  Aligned_cols=168  Identities=20%  Similarity=0.298  Sum_probs=145.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhcc-CCCceeeeccccccccccCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .++|..+++||.|++..|..+++. +.+.||+|+++++.   ......+..|-.++.+. +||.++-++..|.+      
T Consensus       249 l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqt------  322 (593)
T KOG0695|consen  249 LQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQT------  322 (593)
T ss_pred             cccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcc------
Confidence            478999999999999999999976 78999999998753   33344556677777776 68999998887755      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       ...+++|.||++||+|.-..+...   .++++....+...|+.||.|||+   .||+.||||..|+|++..|.+|+.|+
T Consensus       323 -esrlffvieyv~ggdlmfhmqrqr---klpeeharfys~ei~lal~flh~---rgiiyrdlkldnvlldaeghikltdy  395 (593)
T KOG0695|consen  323 -ESRLFFVIEYVNGGDLMFHMQRQR---KLPEEHARFYSAEICLALNFLHE---RGIIYRDLKLDNVLLDAEGHIKLTDY  395 (593)
T ss_pred             -cceEEEEEEEecCcceeeehhhhh---cCcHHHhhhhhHHHHHHHHHHhh---cCeeeeeccccceEEccCCceeeccc
Confidence             678999999999999988777663   48999999999999999999999   89999999999999999999999999


Q ss_pred             Cccccc-cccccccccccCccccCCCC
Q 028629          178 NLPLLA-ENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       178 ~~a~~~-~~~~~~~~~~~~~~y~aPE~  203 (206)
                      |+++.. .+.......+||+.|.|||-
T Consensus       396 gmcke~l~~gd~tstfcgtpnyiapei  422 (593)
T KOG0695|consen  396 GMCKEGLGPGDTTSTFCGTPNYIAPEI  422 (593)
T ss_pred             chhhcCCCCCcccccccCCCcccchhh
Confidence            999864 45567778999999999994

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=3.2e-24  Score=166.98  Aligned_cols=169  Identities=21%  Similarity=0.285  Sum_probs=138.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC---ccHHHHHHHHHHHhccC-CCceeeeccccccccccCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~   97 (206)
                      ..+|..+.+||+|+||.|-++..+ +.+.+|||+++++..   .+.+--+.|-++|.... -|.+++++..|.+      
T Consensus       348 ~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQT------  421 (683)
T KOG0696|consen  348 ATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQT------  421 (683)
T ss_pred             ecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhh------
Confidence            467889999999999999999977 688899999987642   22233355667776664 5677777776654      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       .+.+|+||||+.||+|.-.++.-.   .+-+.....+|..|+-||.+||+   .+|+.||||..|++++.+|.+||+||
T Consensus       422 -mDRLyFVMEyvnGGDLMyhiQQ~G---kFKEp~AvFYAaEiaigLFFLh~---kgIiYRDLKLDNvmLd~eGHiKi~DF  494 (683)
T KOG0696|consen  422 -MDRLYFVMEYVNGGDLMYHIQQVG---KFKEPVAVFYAAEIAIGLFFLHS---KGIIYRDLKLDNVMLDSEGHIKIADF  494 (683)
T ss_pred             -hhheeeEEEEecCchhhhHHHHhc---ccCCchhhhhhHHHHHHhhhhhc---CCeeeeeccccceEeccCCceEeeec
Confidence             678999999999999988777653   36677788999999999999999   89999999999999999999999999


Q ss_pred             Cccccc-cccccccccccCccccCCCCC
Q 028629          178 NLPLLA-ENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~-~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |+++.. -...+....+||+.|+|||-+
T Consensus       495 GmcKEni~~~~TTkTFCGTPdYiAPEIi  522 (683)
T KOG0696|consen  495 GMCKENIFDGVTTKTFCGTPDYIAPEII  522 (683)
T ss_pred             ccccccccCCcceeeecCCCcccccceE
Confidence            999854 344566778999999999964

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.90  E-value=1e-22  Score=148.99  Aligned_cols=142  Identities=12%  Similarity=0.144  Sum_probs=109.6

Q ss_pred             cceeccCcceeEEEEEEeCCcEEEEEEeecCCCcc--------------------------HHHHHHHHHHHhccCCCce
Q 028629           29 SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHS--------------------------TRNFMHHIELISKLRHCHL   82 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~--------------------------~~~~~~e~~~l~~l~h~~i   82 (206)
                      ...||+|++|.||+|...+|+.||+|++.......                          ......|.+.+.++.++++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            46799999999999997689999999997542110                          1123568899999988887


Q ss_pred             eeeccccccccccCCCCceEEEEEeecCCCCHHHH-HhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCcc
Q 028629           83 VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW-ISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKI  161 (206)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p  161 (206)
                      .....+...         ..+++|||++++++... +..    ..++......++.|++.++.++|+.  .+++|+||||
T Consensus        82 ~~p~~~~~~---------~~~lVmE~~~g~~~~~~~l~~----~~~~~~~~~~i~~~l~~~l~~lH~~--~givHrDlkP  146 (190)
T cd05145          82 PVPEPILLK---------KNVLVMEFIGDDGSPAPRLKD----VPLEEEEAEELYEQVVEQMRRLYQE--AGLVHGDLSE  146 (190)
T ss_pred             CCceEEEec---------CCEEEEEEecCCCchhhhhhh----ccCCHHHHHHHHHHHHHHHHHHHHh--CCEecCCCCh
Confidence            443333211         24799999988754433 332    3467888899999999999999983  4999999999


Q ss_pred             ccEEecCCCceeEccCCcccccccc
Q 028629          162 TDILLDQNLVAKISSYNLPLLAENA  186 (206)
Q Consensus       162 ~nil~~~~~~~kl~df~~a~~~~~~  186 (206)
                      +||+++ ++.++|+|||++...+++
T Consensus       147 ~NIll~-~~~~~liDFG~a~~~~~~  170 (190)
T cd05145         147 YNILYH-DGKPYIIDVSQAVELDHP  170 (190)
T ss_pred             hhEEEE-CCCEEEEEcccceecCCC
Confidence            999999 789999999999877653

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.89  E-value=2.3e-23  Score=173.30  Aligned_cols=151  Identities=21%  Similarity=0.398  Sum_probs=131.4

Q ss_pred             CcccceeccCcceeEEEEEEe-CC----cEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           26 FDTSAFMGEGSKGQMYRGRLK-NG----TFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~-~~----~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .+.+++||+|+||+||+|.+- .|    .+||+|++.... .....++..|.-.|.+++|+|++++.++|..        
T Consensus       698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~--------  769 (1177)
T KOG1025|consen  698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCML--------  769 (1177)
T ss_pred             hhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhccc--------
Confidence            456778999999999999963 44    378999886543 4557889999999999999999999999975        


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ..+.|+++|++.|+|.++++...  ..+.....+.|..||++||.|||+   .+++||||-.+|+||.+...+||.|||+
T Consensus       770 s~~qlvtq~mP~G~LlDyvr~hr--~~igsq~lLnw~~QIAkgM~YLe~---qrlVHrdLaaRNVLVksP~hvkitdfgl  844 (1177)
T KOG1025|consen  770 STLQLVTQLMPLGCLLDYVREHR--DNIGSQDLLNWCYQIAKGMKYLEE---QRLVHRDLAARNVLVKSPNHVKITDFGL  844 (1177)
T ss_pred             chHHHHHHhcccchHHHHHHHhh--ccccHHHHHHHHHHHHHHHHHHHh---cchhhhhhhhhheeecCCCeEEEEecch
Confidence            33789999999999999998754  568888899999999999999999   8999999999999999999999999999


Q ss_pred             cccccccccc
Q 028629          180 PLLAENAEKV  189 (206)
Q Consensus       180 a~~~~~~~~~  189 (206)
                      +++.....+.
T Consensus       845 a~ll~~d~~e  854 (1177)
T KOG1025|consen  845 AKLLAPDEKE  854 (1177)
T ss_pred             hhccCccccc
Confidence            9988766543

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.89  E-value=1.1e-21  Score=144.12  Aligned_cols=161  Identities=25%  Similarity=0.480  Sum_probs=136.1

Q ss_pred             eccCcceeEEEEEEe-CCcEEEEEEeecCCCc-cHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEEEeec
Q 028629           32 MGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYV  109 (206)
Q Consensus        32 lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~  109 (206)
                      ||+|.+|.||++... ++..+++|.+...... ..+.+.+|++.++.+.|++++++++++..       ....++++|++
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-------~~~~~~~~e~~   73 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFED-------ENHLYLVMEYC   73 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeec-------CCeEEEEEecC
Confidence            589999999999976 5899999999755432 35678899999999999999999998865       46789999999


Q ss_pred             CCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC-CCceeEccCCccccccccc-
Q 028629          110 PNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-NLVAKISSYNLPLLAENAE-  187 (206)
Q Consensus       110 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~-~~~~kl~df~~a~~~~~~~-  187 (206)
                      .+++|.+++....  ..++...++.++.+++.++.++|+   .+++|+||+|.||++++ ++.++|+||+.+....... 
T Consensus        74 ~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lh~---~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~  148 (215)
T cd00180          74 EGGSLKDLLKENE--GKLSEDEILRILLQILEGLEYLHS---NGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKS  148 (215)
T ss_pred             CCCcHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcc
Confidence            9899999987642  257899999999999999999999   79999999999999999 8999999999998765532 


Q ss_pred             cccccccCccccCCCCC
Q 028629          188 KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       188 ~~~~~~~~~~y~aPE~~  204 (206)
                      ......+...|++||..
T Consensus       149 ~~~~~~~~~~~~~pe~~  165 (215)
T cd00180         149 LLKTIVGTPAYMAPEVL  165 (215)
T ss_pred             hhhcccCCCCccChhHh
Confidence            22335667789999864

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.87  E-value=8.8e-22  Score=166.55  Aligned_cols=177  Identities=23%  Similarity=0.392  Sum_probs=141.5

Q ss_pred             HHHHHhcCCcccceeccCcceeEEEEEEe----C----CcEEEEEEeecCC-CccHHHHHHHHHHHhcc-CCCceeeecc
Q 028629           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLK----N----GTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALG   87 (206)
Q Consensus        18 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~----~----~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~~i~~~~~   87 (206)
                      .++...++....+.+|+|.||.|++|...    .    ...||+|.++... ....+.+..|+++|..+ +|+|++.+.+
T Consensus       290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG  369 (609)
T KOG0200|consen  290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLG  369 (609)
T ss_pred             ceeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhhee
Confidence            34445556667779999999999999843    1    3468999987543 34567889999999999 6999999999


Q ss_pred             ccccccccCCCCceEEEEEeecCCCCHHHHHhcCC------C-----C--cccCHHHHHHHHHHHHHHHHHHhcCCCCce
Q 028629           88 HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGH------A-----W--QSLTWTQRISAAIGVARGIQFLHTGIVPGV  154 (206)
Q Consensus        88 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~------~-----~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i  154 (206)
                      +|..       .+.++++.||+..|+|.+++....      .     .  ..++...++.++.||+.|+.||++   .++
T Consensus       370 ~~t~-------~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~---~~~  439 (609)
T KOG0200|consen  370 ACTQ-------DGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLAS---VPC  439 (609)
T ss_pred             eecc-------CCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhh---CCc
Confidence            9976       567999999999999999997654      0     0  138889999999999999999999   899


Q ss_pred             eccCCccccEEecCCCceeEccCCccccccccccc--cccc--cCccccCCCCC
Q 028629          155 FSNNLKITDILLDQNLVAKISSYNLPLLAENAEKV--GHVT--PYSGSINPTNS  204 (206)
Q Consensus       155 ~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~~~--~~~~--~~~~y~aPE~~  204 (206)
                      +||||-.+|||++++..+||+|||+|+........  ....  -...+||||..
T Consensus       440 vHRDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl  493 (609)
T KOG0200|consen  440 VHRDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESL  493 (609)
T ss_pred             cchhhhhhhEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHh
Confidence            99999999999999999999999999865432211  1111  23459999975

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.87  E-value=4.8e-22  Score=158.50  Aligned_cols=181  Identities=18%  Similarity=0.254  Sum_probs=145.3

Q ss_pred             CccceeCHHHHHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccC------CCc
Q 028629            9 PAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLR------HCH   81 (206)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~------h~~   81 (206)
                      .+...+-++|  ...++|.+....|+|-|+.|..|... -|..||||++..... -.+.=+.|+++|++|.      ..+
T Consensus       419 EGYYrv~igE--~LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~-M~KtGl~EleiLkKL~~AD~Edk~H  495 (752)
T KOG0670|consen  419 EGYYRVRIGE--LLDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEV-MHKTGLKELEILKKLNDADPEDKFH  495 (752)
T ss_pred             cceEEEehhh--hhcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchH-HhhhhhHHHHHHHHhhccCchhhhH
Confidence            3445555554  45678999999999999999999976 477999999974421 1233456999999993      457


Q ss_pred             eeeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCcc
Q 028629           82 LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKI  161 (206)
Q Consensus        82 i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p  161 (206)
                      ++.++..|..       .+.+|+|||-+.- +|.++++.....-.+....+..++.|+..||..|-.   .+|+|.||||
T Consensus       496 clrl~r~F~h-------knHLClVFE~Lsl-NLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~---c~vlHaDIKP  564 (752)
T KOG0670|consen  496 CLRLFRHFKH-------KNHLCLVFEPLSL-NLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKK---CGVLHADIKP  564 (752)
T ss_pred             HHHHHHHhhh-------cceeEEEehhhhc-hHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHh---cCeeecccCc
Confidence            7888777765       6789999999854 999999887665778899999999999999999999   8999999999


Q ss_pred             ccEEecCC-CceeEccCCccccccccccccccccCccccCCCCC
Q 028629          162 TDILLDQN-LVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       162 ~nil~~~~-~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      .||||++. ..+||||||.|.......... +.-+..|.|||-+
T Consensus       565 DNiLVNE~k~iLKLCDfGSA~~~~eneitP-YLVSRFYRaPEIi  607 (752)
T KOG0670|consen  565 DNILVNESKNILKLCDFGSASFASENEITP-YLVSRFYRAPEII  607 (752)
T ss_pred             cceEeccCcceeeeccCccccccccccccH-HHHHHhccCccee
Confidence            99999976 677999999998876655332 5556679999953

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.86  E-value=7.6e-22  Score=146.20  Aligned_cols=165  Identities=17%  Similarity=0.301  Sum_probs=132.3

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ...|.+.+.+|+|.||.+.+|+++ +...+++|.+... ....++|.+|...--.+ .|.||+.-+++.++      +.+
T Consensus        23 ~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p-~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFq------t~d   95 (378)
T KOG1345|consen   23 EDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRP-QTTQADFVREFHYSFFLSPHQHIIDTYEVAFQ------TSD   95 (378)
T ss_pred             hhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcc-hhhHHHHHHHhccceeeccchhhhHHHHHHhh------cCc
Confidence            456999999999999999999987 6778999988644 33456778887654444 58999998887765      345


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec--CCCceeEccCC
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD--QNLVAKISSYN  178 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~--~~~~~kl~df~  178 (206)
                      ..++++||++.|+|.+-+...    .+.+..-..++.|++.|+.|+|+   .+++|||||.+||||-  +..++|+||||
T Consensus        96 ~YvF~qE~aP~gdL~snv~~~----GigE~~~K~v~~ql~SAi~fMHs---knlVHRdlK~eNiLif~~df~rvKlcDFG  168 (378)
T KOG1345|consen   96 AYVFVQEFAPRGDLRSNVEAA----GIGEANTKKVFAQLLSAIEFMHS---KNLVHRDLKAENILIFDADFYRVKLCDFG  168 (378)
T ss_pred             eEEEeeccCccchhhhhcCcc----cccHHHHHHHHHHHHHHHHHhhc---cchhhcccccceEEEecCCccEEEeeecc
Confidence            788899999999999888763    47778888899999999999999   8999999999999996  34699999999


Q ss_pred             ccccccccccccccccCccccCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      +++..+..  ......+..|-+||.
T Consensus       169 ~t~k~g~t--V~~~~~~~~y~~pe~  191 (378)
T KOG1345|consen  169 LTRKVGTT--VKYLEYVNNYHAPEL  191 (378)
T ss_pred             cccccCce--ehhhhhhcccCCcHH
Confidence            99876543  222444556778875

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.86  E-value=6.8e-22  Score=160.65  Aligned_cols=163  Identities=17%  Similarity=0.201  Sum_probs=132.7

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ...|.....+|.|+|+.|-.|... ++...++|.+......    ..+|+.++... +|+|+++..+.+.+       +.
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~~----~~~e~~~~~~~~~h~niv~~~~v~~~-------~~  389 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRADD----NQDEIPISLLVRDHPNIVKSHDVYED-------GK  389 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheeccccccc----cccccchhhhhcCCCcceeecceecC-------Cc
Confidence            457788888999999999999965 7889999999865322    23466555555 69999999999865       77


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEe-cCCCceeEccCCc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL-DQNLVAKISSYNL  179 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~-~~~~~~kl~df~~  179 (206)
                      ..|+|||.+.++-+.+.+....    .....+..|+.+++.|+.|||+   .|++||||+|+|||+ ++.++++|+|||.
T Consensus       390 ~~~~v~e~l~g~ell~ri~~~~----~~~~e~~~w~~~lv~Av~~LH~---~gvvhRDLkp~NIL~~~~~g~lrltyFG~  462 (612)
T KOG0603|consen  390 EIYLVMELLDGGELLRRIRSKP----EFCSEASQWAAELVSAVDYLHE---QGVVHRDLKPGNILLDGSAGHLRLTYFGF  462 (612)
T ss_pred             eeeeeehhccccHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHh---cCeeecCCChhheeecCCCCcEEEEEech
Confidence            8999999999987777666542    2236777899999999999999   899999999999999 5889999999999


Q ss_pred             cccccccccccccccCccccCCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~~  205 (206)
                      ++..+..  ...-+-|..|.|||..+
T Consensus       463 a~~~~~~--~~tp~~t~~y~APEvl~  486 (612)
T KOG0603|consen  463 WSELERS--CDTPALTLQYVAPEVLA  486 (612)
T ss_pred             hhhCchh--hcccchhhcccChhhhc
Confidence            9988765  22246778899999875

>PRK10345 hypothetical protein; Provisional

Probab=99.86  E-value=8.3e-21  Score=140.15  Aligned_cols=141  Identities=11%  Similarity=0.188  Sum_probs=107.2

Q ss_pred             CcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhcc-----CCCceeeeccccccccccCCCC
Q 028629           26 FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKL-----RHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-----~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ....+.||+|+++.||.  ++ ++.. +||++........+.+.+|+..++.+     +||||+++++++.+.    .+.
T Consensus         4 L~~~~~LG~G~~~~Vy~--hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~----~g~   76 (210)
T PRK10345          4 LSEQSPLGTGRHRKCYA--HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETD----CGT   76 (210)
T ss_pred             cCCcceecCCCceEEEE--CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeC----CCC
Confidence            45567899999999995  54 4444 68988765555567899999999999     679999999988651    112


Q ss_pred             ce-EEEEEee--cCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHH-HHHhcCCCCceeccCCccccEEecCC----Cc
Q 028629          100 SR-IFLIFEY--VPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGI-QFLHTGIVPGVFSNNLKITDILLDQN----LV  171 (206)
Q Consensus       100 ~~-~~lv~e~--~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~lH~~~~~~i~h~dl~p~nil~~~~----~~  171 (206)
                      +. +.+++||  +.+++|.+++...    .+++.  ..++.|++.++ .|||+   .+|+|+||||+|||++..    ..
T Consensus        77 g~v~~~I~e~~G~~~~tL~~~l~~~----~~~e~--~~~~~~~L~~l~~yLh~---~~IvhrDlKp~NILl~~~~~~~~~  147 (210)
T PRK10345         77 GYVYDVIADFDGKPSITLTEFAEQC----RYEED--VAQLRQLLKKLKRYLLD---NRIVTMELKPQNILCQRISESEVI  147 (210)
T ss_pred             eEEEEEEecCCCCcchhHHHHHHcc----cccHh--HHHHHHHHHHHHHHHHH---CCEeecCCCHHHEEEeccCCCCCc
Confidence            34 3478999  4578999999763    24444  35577788777 89999   799999999999999742    48


Q ss_pred             eeEcc-CCcccc
Q 028629          172 AKISS-YNLPLL  182 (206)
Q Consensus       172 ~kl~d-f~~a~~  182 (206)
                      ++|+| ||....
T Consensus       148 ~~LiDg~G~~~~  159 (210)
T PRK10345        148 PVVCDNIGESTF  159 (210)
T ss_pred             EEEEECCCCcce
Confidence            99999 565554

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.86  E-value=2.3e-22  Score=151.61  Aligned_cols=171  Identities=16%  Similarity=0.192  Sum_probs=140.2

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC--CCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK--KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ..+|..++.++.|.. .|..+... .+++|++|.+...  .....++..+|..++..+.|+|+++++.++.-..+. ...
T Consensus        16 ~~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l-~~~   93 (369)
T KOG0665|consen   16 PKRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTL-EEF   93 (369)
T ss_pred             eeeeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccH-HHH
Confidence            678888889999988 66666654 6889999987544  244556788899999999999999999988542211 123


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...+++||+++. +|.+.+...     ++-.++..++.|+++|+.++|+   .+|+||||||+||++..+..+||.|||+
T Consensus        94 ~e~y~v~e~m~~-nl~~vi~~e-----lDH~tis~i~yq~~~~ik~lhs---~~IihRdLkPsnivv~~~~~lKi~dfg~  164 (369)
T KOG0665|consen   94 QEVYLVMELMDA-NLCQVILME-----LDHETISYILYQMLCGIKHLHS---AGIIHRDLKPSNIVVNSDCTLKILDFGL  164 (369)
T ss_pred             HhHHHHHHhhhh-HHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHh---cceeecccCcccceecchhheeeccchh
Confidence            568999999966 899888743     7788999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |+..+..-.-..+..+..|.|||-.
T Consensus       165 ar~e~~~~~mtpyVvtRyyrapevi  189 (369)
T KOG0665|consen  165 ARTEDTDFMMTPYVVTRYYRAPEVI  189 (369)
T ss_pred             hcccCcccccCchhheeeccCchhe
Confidence            9987766444457888899999953

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.86  E-value=6.4e-22  Score=164.74  Aligned_cols=165  Identities=21%  Similarity=0.298  Sum_probs=128.7

Q ss_pred             CCcccceeccCcce-eEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCCceE
Q 028629           25 NFDTSAFMGEGSKG-QMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        25 ~~~~~~~lg~g~~g-~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      -|...+++|.|+.| .||+|... |+.||+|++-.   .......+|+..|+.- +||||+++++.-.+       ....
T Consensus       510 ~~~~~eilG~Gs~Gt~Vf~G~ye-~R~VAVKrll~---e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d-------~qF~  578 (903)
T KOG1027|consen  510 FFSPKEILGYGSNGTVVFRGVYE-GREVAVKRLLE---EFFDFAQREIQLLQESDEHPNVIRYYCSEQD-------RQFL  578 (903)
T ss_pred             eeccHHHcccCCCCcEEEEEeeC-CceehHHHHhh---HhHHHHHHHHHHHHhccCCCceEEEEeeccC-------CceE
Confidence            45666778888887 68999984 88999998862   2334567899999988 59999999875433       6789


Q ss_pred             EEEEeecCCCCHHHHHhcC-CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC---C--CceeEcc
Q 028629          103 FLIFEYVPNGTLRSWISEG-HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---N--LVAKISS  176 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~---~--~~~kl~d  176 (206)
                      ||..|.|.. +|.++++.. ...........+....|++.|+++||+   .+|+||||||.||||+-   +  .+++|+|
T Consensus       579 YIalELC~~-sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHs---l~iVHRDLkPQNILI~~~~~~~~~ra~iSD  654 (903)
T KOG1027|consen  579 YIALELCAC-SLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHS---LKIVHRDLKPQNILISVPSADGTLRAKISD  654 (903)
T ss_pred             EEEehHhhh-hHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHh---cccccccCCCceEEEEccCCCcceeEEecc
Confidence            999999955 999999873 111112213446678999999999999   89999999999999985   2  4789999


Q ss_pred             CCccccccccc----cccccccCccccCCCCC
Q 028629          177 YNLPLLAENAE----KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~~----~~~~~~~~~~y~aPE~~  204 (206)
                      ||+++....+.    ......||.|++|||+.
T Consensus       655 fglsKkl~~~~sS~~r~s~~sGt~GW~APE~L  686 (903)
T KOG1027|consen  655 FGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQL  686 (903)
T ss_pred             cccccccCCCcchhhcccCCCCcccccCHHHH
Confidence            99998776542    34456899999999975

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.85  E-value=1.1e-20  Score=138.02  Aligned_cols=150  Identities=14%  Similarity=0.174  Sum_probs=123.3

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCC-CceeeeccccccccccCCC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRH-CHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h-~~i~~~~~~~~~~~~~~~~   98 (206)
                      ...++|..++.||+|+||.+|.|..- +|+.||||+-+....  ..++.-|..+.+.+++ ..|..+..+..+       
T Consensus        12 iv~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~--hpqL~yEskvY~iL~~g~GiP~i~~y~~e-------   82 (341)
T KOG1163|consen   12 IVGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAK--HPQLLYESKVYRILQGGVGIPHIRHYGTE-------   82 (341)
T ss_pred             eeccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCC--CcchhHHHHHHHHhccCCCCchhhhhccc-------
Confidence            34578999999999999999999954 899999998764432  3456678888888864 677777766644       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec---CCCceeEc
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD---QNLVAKIS  175 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~---~~~~~kl~  175 (206)
                      ..+-.+||+.+ |.||++++.-.+  ..++..+++-++-|++.-++|+|.   .+++||||||+|+|..   ....+.++
T Consensus        83 ~~ynvlVMdLL-GPsLEdLfnfC~--R~ftmkTvLMLaDQml~RiEyvH~---r~fiHRDIKPdNFLMGlgrh~~kl~LI  156 (341)
T KOG1163|consen   83 KDYNVLVMDLL-GPSLEDLFNFCS--RRFTMKTVLMLADQMLSRIEYVHL---RNFIHRDIKPDNFLMGLGRHCNKLYLI  156 (341)
T ss_pred             cccceeeeecc-CccHHHHHHHHh--hhhhHHhHHHHHHHHHHHHHHHHh---hccccccCCccceeeccccccceEEEE
Confidence            55668999998 779999887554  358889999999999999999999   8999999999999997   34688999


Q ss_pred             cCCccccccc
Q 028629          176 SYNLPLLAEN  185 (206)
Q Consensus       176 df~~a~~~~~  185 (206)
                      |||+|+...+
T Consensus       157 DFGLaKky~d  166 (341)
T KOG1163|consen  157 DFGLAKKYRD  166 (341)
T ss_pred             eccchhhhcc
Confidence            9999986544

>smart00090 RIO RIO-like kinase

Probab=99.85  E-value=1e-20  Score=142.67  Aligned_cols=146  Identities=10%  Similarity=0.090  Sum_probs=111.5

Q ss_pred             cCCcccceeccCcceeEEEEE--EeCCcEEEEEEeecCCCc------------------------cHHHHHHHHHHHhcc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGR--LKNGTFIAIRCLKMKKSH------------------------STRNFMHHIELISKL   77 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~--~~~~~~vaiK~~~~~~~~------------------------~~~~~~~e~~~l~~l   77 (206)
                      .-|.+.+.||+|++|.||+|.  ..+|..||+|++......                        ....+..|+..+.++
T Consensus        28 ~~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L  107 (237)
T smart00090       28 ILSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRL  107 (237)
T ss_pred             chHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            358889999999999999998  458999999998754211                        012346799999999


Q ss_pred             CCCc--eeeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCc-e
Q 028629           78 RHCH--LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG-V  154 (206)
Q Consensus        78 ~h~~--i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~-i  154 (206)
                      .+..  +.+++..           ...+++|||+++.++.......   ..........++.|++.++.++|+   .+ +
T Consensus       108 ~~~~i~~p~~~~~-----------~~~~lV~E~~~g~~L~~~~~~~---~~~~~~~~~~i~~qi~~~l~~LH~---~g~i  170 (237)
T smart00090      108 YEAGVPVPKPIAW-----------RRNVLVMEFIGGDGLPAPRLKD---VEPEEEEEFELYDDILEEMRKLYK---EGEL  170 (237)
T ss_pred             HhcCCCCCeeeEe-----------cCceEEEEEecCCccccccccc---CCcchHHHHHHHHHHHHHHHHHHh---cCCE
Confidence            7533  2333321           1247999999998877654332   235556677899999999999999   78 9


Q ss_pred             eccCCccccEEecCCCceeEccCCccccccccc
Q 028629          155 FSNNLKITDILLDQNLVAKISSYNLPLLAENAE  187 (206)
Q Consensus       155 ~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~  187 (206)
                      +|+||+|+||+++ ++.++|+|||.+...+.+.
T Consensus       171 iH~Dikp~NIli~-~~~i~LiDFg~a~~~~~~~  202 (237)
T smart00090      171 VHGDLSEYNILVH-DGKVVIIDVSQSVELDHPM  202 (237)
T ss_pred             EeCCCChhhEEEE-CCCEEEEEChhhhccCCcc
Confidence            9999999999999 8899999999998666544

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.84  E-value=1.7e-20  Score=148.43  Aligned_cols=156  Identities=18%  Similarity=0.306  Sum_probs=126.9

Q ss_pred             CCCCCccceeCHHHHHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccC-----
Q 028629            5 ALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-----   78 (206)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-----   78 (206)
                      +|...+.|.+.+.+.. ..++|.+.++||.|.|++||+|... +.+.||+|+++.. ....+....||++|+++.     
T Consensus        60 dY~kGGYHpV~IGD~F-~~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSA-qhYtEaAlDEIklL~~v~~~Dp~  137 (590)
T KOG1290|consen   60 DYRKGGYHPVRIGDVF-NGGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSA-QHYTEAALDEIKLLQQVREGDPN  137 (590)
T ss_pred             hhhcCCCceeeccccc-cCceEEEEEeccccccceeEEEeeccCCeEEEEEEEehh-hHHHHHHHHHHHHHHHHHhcCCC
Confidence            4566667777666642 2378999999999999999999965 7889999999843 455667788999999982     


Q ss_pred             ---CCceeeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCcee
Q 028629           79 ---HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVF  155 (206)
Q Consensus        79 ---h~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~  155 (206)
                         ...|+++++.|..   .++.+...|+|+|++ |-+|..+|....- ..++...+..|++|++.||.|||+.  .+|+
T Consensus       138 ~~~~~~VV~LlD~Fkh---sGpNG~HVCMVfEvL-GdnLLklI~~s~Y-rGlpl~~VK~I~~qvL~GLdYLH~e--cgII  210 (590)
T KOG1290|consen  138 DPGKKCVVQLLDHFKH---SGPNGQHVCMVFEVL-GDNLLKLIKYSNY-RGLPLSCVKEICRQVLTGLDYLHRE--CGII  210 (590)
T ss_pred             CCCCceeeeeecccee---cCCCCcEEEEEehhh-hhHHHHHHHHhCC-CCCcHHHHHHHHHHHHHHHHHHHHh--cCcc
Confidence               2478999998865   334567899999999 5589888876433 5699999999999999999999986  7999


Q ss_pred             ccCCccccEEecCC
Q 028629          156 SNNLKITDILLDQN  169 (206)
Q Consensus       156 h~dl~p~nil~~~~  169 (206)
                      |-||||+|||+..+
T Consensus       211 HTDlKPENvLl~~~  224 (590)
T KOG1290|consen  211 HTDLKPENVLLCST  224 (590)
T ss_pred             ccCCCcceeeeecc
Confidence            99999999999743

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.84  E-value=4.1e-20  Score=137.23  Aligned_cols=147  Identities=12%  Similarity=0.109  Sum_probs=113.7

Q ss_pred             HhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHH---H------HHHHHHHHhccCCCceeeeccccccc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTR---N------FMHHIELISKLRHCHLVSALGHCFEC   92 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~---~------~~~e~~~l~~l~h~~i~~~~~~~~~~   92 (206)
                      ..++|+..+.+|.|+||.||.... ++..+|+|++..+......   .      +.+|+..+.++.|+++..+..++...
T Consensus        29 l~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~  107 (232)
T PRK10359         29 LSYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLA  107 (232)
T ss_pred             hhCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeec
Confidence            358999999999999999999665 5778999999744322222   2      57888999999999999988775431


Q ss_pred             cccC-CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc
Q 028629           93 YFDD-SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV  171 (206)
Q Consensus        93 ~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~  171 (206)
                      .... ...+..+++|||++|.+|.++..       .+..    ...+++.++..+|+   .+++|+|++|+||++++++ 
T Consensus       108 ~~~~~~~~~~~~lvmEyi~G~tL~~~~~-------~~~~----~~~~i~~~l~~lH~---~gi~H~Dikp~Nili~~~g-  172 (232)
T PRK10359        108 ERKTLRYAHTYIMLIEYIEGVELNDMPE-------ISED----VKAKIKASIESLHQ---HGMVSGDPHKGNFIVSKNG-  172 (232)
T ss_pred             ccccccccCCeEEEEEEECCccHHHhhh-------ccHH----HHHHHHHHHHHHHH---cCCccCCCChHHEEEeCCC-
Confidence            1100 01245889999999999988732       2222    35589999999999   7999999999999999888 


Q ss_pred             eeEccCCcccccc
Q 028629          172 AKISSYNLPLLAE  184 (206)
Q Consensus       172 ~kl~df~~a~~~~  184 (206)
                      ++++|||......
T Consensus       173 i~liDfg~~~~~~  185 (232)
T PRK10359        173 LRIIDLSGKRCTA  185 (232)
T ss_pred             EEEEECCCccccc
Confidence            9999999886553

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.83  E-value=8.9e-20  Score=135.50  Aligned_cols=136  Identities=14%  Similarity=0.297  Sum_probs=109.7

Q ss_pred             ceeccCcceeEEEEEEeCCcEEEEEEeecCCCc--------cHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           30 AFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH--------STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~--------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      +.||+|++|.||+|.. .|..+++|........        ....+.+|+.++..+.|+++.....++..       ...
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~-------~~~   73 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVD-------PEN   73 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEe-------CCC
Confidence            5789999999999988 5778888976532211        12356789999999998887766555433       345


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .+++|||++|++|.+++...   .   . .+..++.+++.+|.++|+   .+++|+|++|.||+++ ++.++|+|||.+.
T Consensus        74 ~~lv~e~~~G~~L~~~~~~~---~---~-~~~~i~~~i~~~l~~lH~---~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~  142 (211)
T PRK14879         74 FIIVMEYIEGEPLKDLINSN---G---M-EELELSREIGRLVGKLHS---AGIIHGDLTTSNMILS-GGKIYLIDFGLAE  142 (211)
T ss_pred             CEEEEEEeCCcCHHHHHHhc---c---H-HHHHHHHHHHHHHHHHHh---CCcccCCCCcccEEEE-CCCEEEEECCccc
Confidence            78999999999999988653   1   2 778899999999999999   7999999999999999 7889999999997


Q ss_pred             ccc
Q 028629          182 LAE  184 (206)
Q Consensus       182 ~~~  184 (206)
                      ...
T Consensus       143 ~~~  145 (211)
T PRK14879        143 FSK  145 (211)
T ss_pred             CCC
Confidence            644

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.83  E-value=6.1e-20  Score=135.18  Aligned_cols=147  Identities=14%  Similarity=0.144  Sum_probs=111.9

Q ss_pred             HHHHHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCc----------------------cHHHHHHHHHH
Q 028629           16 LEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH----------------------STRNFMHHIEL   73 (206)
Q Consensus        16 ~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~----------------------~~~~~~~e~~~   73 (206)
                      +.++......|...+.||+|++|.||++...+|+.||+|++......                      .......|...
T Consensus         7 ~~~~~~~~~~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~   86 (198)
T cd05144           7 LHTLVKRGVVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAA   86 (198)
T ss_pred             HHHHHHcCchhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHH
Confidence            34455555568899999999999999999878999999987643211                      01125668888


Q ss_pred             HhccCCCce--eeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCC
Q 028629           74 ISKLRHCHL--VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV  151 (206)
Q Consensus        74 l~~l~h~~i--~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~  151 (206)
                      +..+.++++  .....           ....+++|||+++++|.+....         .....++.+++.++.++|+   
T Consensus        87 l~~l~~~~i~v~~~~~-----------~~~~~lv~e~~~g~~L~~~~~~---------~~~~~~~~~i~~~l~~lh~---  143 (198)
T cd05144          87 LKALYEEGFPVPKPID-----------WNRHAVVMEYIDGVELYRVRVL---------EDPEEVLDEILEEIVKAYK---  143 (198)
T ss_pred             HHHHHHcCCCCCceee-----------cCCceEEEEEeCCcchhhcccc---------ccHHHHHHHHHHHHHHHHH---
Confidence            888877743  33222           1245899999999888765321         2235678899999999999   


Q ss_pred             CceeccCCccccEEecCCCceeEccCCccccccc
Q 028629          152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       152 ~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                      .+++|+||+|+||++++++.++|+|||.+...+.
T Consensus       144 ~gi~H~Dl~p~Nill~~~~~~~liDfg~~~~~~~  177 (198)
T cd05144         144 HGIIHGDLSEFNILVDDDEKIYIIDWPQMVSTDH  177 (198)
T ss_pred             CCCCcCCCCcccEEEcCCCcEEEEECCccccCCC
Confidence            7999999999999999999999999999965544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.83  E-value=3.7e-20  Score=140.75  Aligned_cols=163  Identities=12%  Similarity=0.169  Sum_probs=131.3

Q ss_pred             hcCCcccceeccCcceeEEEEEE-eCCcEEEEEEeecCCCccHHHHHHHHHHHhccC-CCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRL-KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      --+|+++++||+|.||.++.|.. -++++||||.-.  ....+.++..|.+..+.|. .++|...+-+-..       +.
T Consensus        27 G~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEP--rkS~APQLrdEYr~YKlL~g~~GIP~vYYFGqe-------G~   97 (449)
T KOG1165|consen   27 GPHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEP--RKSEAPQLRDEYRTYKLLGGTEGIPQVYYFGQE-------GK   97 (449)
T ss_pred             cccceeccccccCcceeeecccccccCceEEEEecc--ccCCcchHHHHHHHHHHHcCCCCCCceeeeccc-------cc
Confidence            45899999999999999999994 489999999764  3344567788888888885 6888887665432       44


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC-----CCceeEc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-----NLVAKIS  175 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~-----~~~~kl~  175 (206)
                      +=.+|+|.+ |.||+++..-..  -.++..++..+|.|++.-+.++|+   ..+|.|||||+|+||..     ...+.|+
T Consensus        98 ~NiLVidLL-GPSLEDLFD~Cg--R~FSvKTV~miA~Qmi~rie~vH~---k~LIYRDIKPdNFLIGrp~~k~~n~Ihii  171 (449)
T KOG1165|consen   98 YNILVIDLL-GPSLEDLFDLCG--RRFSVKTVAMIAKQMITRIEYVHE---KDLIYRDIKPDNFLIGRPGTKDANVIHII  171 (449)
T ss_pred             hhhhhhhhh-CcCHHHHHHHhc--CcccHHhHHHHHHHHHHHHHHHHh---cceeecccCccceeecCCCCCCCceEEEE
Confidence            556889988 679999887654  358999999999999999999999   89999999999999973     2578999


Q ss_pred             cCCccccccccccc--------cccccCccccC
Q 028629          176 SYNLPLLAENAEKV--------GHVTPYSGSIN  200 (206)
Q Consensus       176 df~~a~~~~~~~~~--------~~~~~~~~y~a  200 (206)
                      |||+|+....+.+.        ....||..||+
T Consensus       172 DFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMS  204 (449)
T KOG1165|consen  172 DFGMAKEYRDPKTKQHIPYREHKSLSGTARYMS  204 (449)
T ss_pred             eccchhhhcCccccccCccccccccccceeeeE
Confidence            99999876654432        23578888875

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.83  E-value=8.5e-20  Score=133.16  Aligned_cols=136  Identities=15%  Similarity=0.067  Sum_probs=105.1

Q ss_pred             CcccceeccCcceeEEEEEEeCCcEEEEEEeecCCC----ccHHHHHHHHHHHhccC-CCceeeeccccccccccCCCCc
Q 028629           26 FDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS----HSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      +.....|++|+||+|+.+.. .+..++.+.+.....    .....+.+|+++|+++. ++++++++++.           
T Consensus         4 ~~~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~~-----------   71 (218)
T PRK12274          4 PAVNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHWD-----------   71 (218)
T ss_pred             cccceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEc-----------
Confidence            34577899999999996665 577888777764332    11225788999999995 47788887641           


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCC-ccccEEecCCCceeEccCCc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNL-KITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl-~p~nil~~~~~~~kl~df~~  179 (206)
                      ..+++|||+.|.+|.+.....          ...++.|++.++.++|+   .||+|+|| +|+||++++++.++|+|||+
T Consensus        72 ~~~lvmeyI~G~~L~~~~~~~----------~~~~~~qi~~~L~~lH~---~GIvHrDL~kp~NILv~~~g~i~LIDFG~  138 (218)
T PRK12274         72 GRHLDRSYLAGAAMYQRPPRG----------DLAYFRAARRLLQQLHR---CGVAHNDLAKEANWLVQEDGSPAVIDFQL  138 (218)
T ss_pred             CEEEEEeeecCccHHhhhhhh----------hHHHHHHHHHHHHHHHH---CcCccCCCCCcceEEEcCCCCEEEEECCC
Confidence            368999999998886543211          13467899999999999   79999999 79999999999999999999


Q ss_pred             ccccccc
Q 028629          180 PLLAENA  186 (206)
Q Consensus       180 a~~~~~~  186 (206)
                      |......
T Consensus       139 A~~~~~~  145 (218)
T PRK12274        139 AVRGNPR  145 (218)
T ss_pred             ceecCCc
Confidence            9865543

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.82  E-value=2.9e-20  Score=144.63  Aligned_cols=145  Identities=14%  Similarity=0.312  Sum_probs=123.8

Q ss_pred             HHHHhcCCcccceeccCcceeEEEEEEe----CCcEEEEEEeecCCCccHHHHHHHHHHHhccC-CCceeeecccccccc
Q 028629           19 LEEATNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECY   93 (206)
Q Consensus        19 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~   93 (206)
                      +....+.|...++||.|.|+.||++...    .++.||+|.+..-.  .-..+.+|++.|..+. +.||+++.+.+..  
T Consensus        31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts--~p~ri~~El~~L~~~gG~~ni~~~~~~~rn--  106 (418)
T KOG1167|consen   31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS--SPSRILNELEMLYRLGGSDNIIKLNGCFRN--  106 (418)
T ss_pred             hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeeccccc--CchHHHHHHHHHHHhccchhhhcchhhhcc--
Confidence            4445678999999999999999999953    46789999886332  2355888999999995 8999999998855  


Q ss_pred             ccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC-CCce
Q 028629           94 FDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-NLVA  172 (206)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~-~~~~  172 (206)
                           ++..++|+||++.-...++...      ++...+..+++.+..||.++|.   .||+|||+||+|++.+. .++-
T Consensus       107 -----nd~v~ivlp~~~H~~f~~l~~~------l~~~~i~~Yl~~ll~Al~~~h~---~GIvHRDiKpsNFL~n~~t~rg  172 (418)
T KOG1167|consen  107 -----NDQVAIVLPYFEHDRFRDLYRS------LSLAEIRWYLRNLLKALAHLHK---NGIVHRDIKPSNFLYNRRTQRG  172 (418)
T ss_pred             -----CCeeEEEecccCccCHHHHHhc------CCHHHHHHHHHHHHHHhhhhhc---cCccccCCCccccccccccCCc
Confidence                 6789999999999888888865      5688889999999999999999   79999999999999994 4778


Q ss_pred             eEccCCccc
Q 028629          173 KISSYNLPL  181 (206)
Q Consensus       173 kl~df~~a~  181 (206)
                      .|.|||+|.
T Consensus       173 ~LvDFgLA~  181 (418)
T KOG1167|consen  173 VLVDFGLAQ  181 (418)
T ss_pred             eEEechhHH
Confidence            899999996

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.82  E-value=1.6e-19  Score=142.36  Aligned_cols=167  Identities=16%  Similarity=0.180  Sum_probs=128.0

Q ss_pred             CCcccceeccCcceeEEEEEEeC--CcEEEEEEeecCCCccHHHHHHHHHHHhccCC----CceeeeccccccccccCCC
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLKN--GTFIAIRCLKMKKSHSTRNFMHHIELISKLRH----CHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h----~~i~~~~~~~~~~~~~~~~   98 (206)
                      +|.+.+.||+|+||.||.+....  ...+|+|............+..|..++..+..    +++..+.....      ..
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~------~~   92 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGR------ST   92 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEecc------CC
Confidence            89999999999999999999753  35789998875533332367778888888863    46666666552      12


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC-----Ccee
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN-----LVAK  173 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~-----~~~k  173 (206)
                      ...-++||+.+ |.+|.++..... ...++..+...++.|++.+|.++|+   .|++||||||.|+++...     ..+.
T Consensus        93 ~~~~~iVM~l~-G~sL~dl~~~~~-~~~fs~~T~l~ia~q~l~~l~~lH~---~G~iHRDiKp~N~~~g~~~~~~~~~~~  167 (322)
T KOG1164|consen   93 EDFNFIVMSLL-GPSLEDLRKRNP-PGRFSRKTVLRIAIQNLNALEDLHS---KGFIHRDIKPENFVVGQSSRSEVRTLY  167 (322)
T ss_pred             CceeEEEEecc-CccHHHHHHhCC-CCCcCHhHHHHHHHHHHHHHHHHHh---cCcccCCcCHHHeeecCCCCcccceEE
Confidence            45778999988 679999886554 2579999999999999999999999   899999999999999854     4689


Q ss_pred             EccCCccc--ccc-cc-------cc-ccccccCccccCCC
Q 028629          174 ISSYNLPL--LAE-NA-------EK-VGHVTPYSGSINPT  202 (206)
Q Consensus       174 l~df~~a~--~~~-~~-------~~-~~~~~~~~~y~aPE  202 (206)
                      |.|||+++  ... ..       .. .....||..|.++.
T Consensus       168 llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~  207 (322)
T KOG1164|consen  168 LLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASIN  207 (322)
T ss_pred             EEecCCCccccccCCCCcccccCCCCccCCCCccccccHH
Confidence            99999998  321 11       01 22345888887764

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.81  E-value=3e-19  Score=149.60  Aligned_cols=140  Identities=12%  Similarity=0.195  Sum_probs=108.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEeCCcEEEEEEe-ecC-CC------ccHHHHHHHHHHHhccCCCceeeeccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCL-KMK-KS------HSTRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~-~~~-~~------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   94 (206)
                      ...|...+.||+|+||.||++.+.+.. +++|.. ... ..      ...+.+.+|+++++.++|+++.....++..   
T Consensus       332 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~-~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~---  407 (535)
T PRK09605        332 KRRKIPDHLIGKGAEADIKKGEYLGRD-AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVD---  407 (535)
T ss_pred             ccccCccceeccCCcEEEEEEeecCcc-ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEe---
Confidence            345567889999999999999876433 333432 211 11      123467889999999999998776555443   


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeE
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI  174 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl  174 (206)
                          ....+++|||+++++|.+++.           ....++.+++.+|.+||+   .+++|||+||+||++ +++.++|
T Consensus       408 ----~~~~~lv~E~~~g~~L~~~l~-----------~~~~~~~~i~~~L~~lH~---~giiHrDlkp~NILl-~~~~~~l  468 (535)
T PRK09605        408 ----PEEKTIVMEYIGGKDLKDVLE-----------GNPELVRKVGEIVAKLHK---AGIVHGDLTTSNFIV-RDDRLYL  468 (535)
T ss_pred             ----CCCCEEEEEecCCCcHHHHHH-----------HHHHHHHHHHHHHHHHHh---CCCccCCCChHHEEE-ECCcEEE
Confidence                345789999999999998775           235688999999999999   799999999999999 5789999


Q ss_pred             ccCCccccccc
Q 028629          175 SSYNLPLLAEN  185 (206)
Q Consensus       175 ~df~~a~~~~~  185 (206)
                      +|||+++....
T Consensus       469 iDFGla~~~~~  479 (535)
T PRK09605        469 IDFGLGKYSDL  479 (535)
T ss_pred             EeCcccccCCc
Confidence            99999987554

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.81  E-value=4.2e-19  Score=130.76  Aligned_cols=133  Identities=17%  Similarity=0.305  Sum_probs=103.8

Q ss_pred             eeccCcceeEEEEEEeCCcEEEEEEeecCC-Cc-------cHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           31 FMGEGSKGQMYRGRLKNGTFIAIRCLKMKK-SH-------STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        31 ~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~-~~-------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      .||+|++|.||++.+ ++..+++|...... ..       ....+.+|+++++.+.++++.....++..       ....
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~-------~~~~   72 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVD-------PDNK   72 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-------CCCC
Confidence            379999999999996 47789999864322 11       12456789999999988765444333332       3456


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      +++|||++|++|.+++...   ..       .++.+++.+|.++|+   .+++|+|++|.||+++ ++.+++.|||++..
T Consensus        73 ~lv~e~~~g~~l~~~~~~~---~~-------~~~~~i~~~l~~lH~---~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724        73 TIVMEYIEGKPLKDVIEEG---ND-------ELLREIGRLVGKLHK---AGIVHGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             EEEEEEECCccHHHHHhhc---HH-------HHHHHHHHHHHHHHH---CCeecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence            8999999999999887553   11       778999999999999   8999999999999999 88999999999986


Q ss_pred             ccc
Q 028629          183 AEN  185 (206)
Q Consensus       183 ~~~  185 (206)
                      ...
T Consensus       139 ~~~  141 (199)
T TIGR03724       139 SDE  141 (199)
T ss_pred             CCc
Confidence            543

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.78  E-value=8.4e-18  Score=131.05  Aligned_cols=167  Identities=22%  Similarity=0.408  Sum_probs=138.0

Q ss_pred             CcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCc---cHHHHHHHHHHHhccCCC-ceeeeccccccccccCCCCce
Q 028629           26 FDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH---STRNFMHHIELISKLRHC-HLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l~h~-~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      |...+.||.|+|+.||.+...  ..+++|.+......   ....+.+|+.+++.+.|+ +++++...+..       ...
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~-------~~~   72 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQD-------EGS   72 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEec-------CCE
Confidence            677889999999999999986  77899988755432   366788999999999988 79999888743       344


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC-ceeEccCCcc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-VAKISSYNLP  180 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~-~~kl~df~~a  180 (206)
                      .+++++++.++++.+++........+.......+..|++.++.++|+   .+++|||+||+||+++..+ .++++|||.+
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~---~~~~hrd~kp~nil~~~~~~~~~l~dfg~~  149 (384)
T COG0515          73 LYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHS---KGIIHRDIKPENILLDRDGRVVKLIDFGLA  149 (384)
T ss_pred             EEEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeeecCCCCeEEEeccCcc
Confidence            79999999999999777654210158889999999999999999999   7999999999999999888 7999999999


Q ss_pred             ccccccc-------cccccccCccccCCCCC
Q 028629          181 LLAENAE-------KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~-------~~~~~~~~~~y~aPE~~  204 (206)
                      .......       ......++..|+|||..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~  180 (384)
T COG0515         150 KLLPDPGSTSSIPALPSTSVGTPGYMAPEVL  180 (384)
T ss_pred             eecCCCCccccccccccccccccccCCHHHh
Confidence            8655432       24567899999999964

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.75  E-value=1.6e-17  Score=121.05  Aligned_cols=138  Identities=12%  Similarity=0.198  Sum_probs=95.7

Q ss_pred             cceeccCcceeEEEEEEeCCcEEEEEEeecCCCccH--HH----------------------HHHHHHHHhccCCCc--e
Q 028629           29 SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST--RN----------------------FMHHIELISKLRHCH--L   82 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~--~~----------------------~~~e~~~l~~l~h~~--i   82 (206)
                      .+.||+|++|.||+|...++..||+|++........  ..                      ...|...+..+.+..  +
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            567999999999999977899999999875322111  11                      123444555543332  2


Q ss_pred             eeeccccccccccCCCCceEEEEEeecCCCCHHH-HHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCcc
Q 028629           83 VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRS-WISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKI  161 (206)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p  161 (206)
                      .+.+..           ...+++|||++++++.. .+....    . ......++.+++.++.++|..  .+++|+||+|
T Consensus        82 ~~~~~~-----------~~~~lv~e~~~g~~~~~~~l~~~~----~-~~~~~~~~~~~~~~l~~lh~~--~~ivH~Dl~p  143 (187)
T cd05119          82 PKPIDL-----------NRHVLVMEFIGGDGIPAPRLKDVR----L-LEDPEELYDQILELMRKLYRE--AGLVHGDLSE  143 (187)
T ss_pred             CceEec-----------CCCEEEEEEeCCCCccChhhhhhh----h-cccHHHHHHHHHHHHHHHhhc--cCcCcCCCCh
Confidence            222221           23689999999854321 121110    1 155678899999999999984  5999999999


Q ss_pred             ccEEecCCCceeEccCCccccccc
Q 028629          162 TDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       162 ~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                      +||+++ ++.++++|||.+.....
T Consensus       144 ~Nili~-~~~~~liDfg~a~~~~~  166 (187)
T cd05119         144 YNILVD-DGKVYIIDVPQAVEIDH  166 (187)
T ss_pred             hhEEEE-CCcEEEEECcccccccC
Confidence            999999 89999999999976554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.75  E-value=1.1e-18  Score=135.43  Aligned_cols=179  Identities=19%  Similarity=0.268  Sum_probs=139.9

Q ss_pred             HHHHHHhcCCcccceeccCcceeEEEEEEeC------CcEEEEEEeecC-CCccHHHHHHHHHHHhccCCCceeeecccc
Q 028629           17 EELEEATNNFDTSAFMGEGSKGQMYRGRLKN------GTFIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHC   89 (206)
Q Consensus        17 ~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~------~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~   89 (206)
                      .++.....+++....+.+|+||+||.|.|++      .+.|.+|+++.. ...+...+..|.-.+..+.|+|+.++.+++
T Consensus       277 ~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~  356 (563)
T KOG1024|consen  277 QELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVS  356 (563)
T ss_pred             HhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEE
Confidence            3444555678888889999999999998763      334667777543 344556788999999999999999999988


Q ss_pred             ccccccCCCCceEEEEEeecCCCCHHHHHh-----cCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccE
Q 028629           90 FECYFDDSSVSRIFLIFEYVPNGTLRSWIS-----EGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDI  164 (206)
Q Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~ni  164 (206)
                      ..      .....++++.+...|+|..++.     .....+.++..+...++.|++.|+.|||+   .+++|.||..+|.
T Consensus       357 ie------~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~---~~ViHkDiAaRNC  427 (563)
T KOG1024|consen  357 IE------DYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHN---HGVIHKDIAARNC  427 (563)
T ss_pred             ee------ccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHh---cCcccchhhhhcc
Confidence            75      3457889999999999999998     33445778889999999999999999999   8999999999999


Q ss_pred             EecCCCceeEccCCcccccccc-ccc--cccccCccccCCCCC
Q 028629          165 LLDQNLVAKISSYNLPLLAENA-EKV--GHVTPYSGSINPTNS  204 (206)
Q Consensus       165 l~~~~~~~kl~df~~a~~~~~~-~~~--~~~~~~~~y~aPE~~  204 (206)
                      +|++..++||+|=.+++-.-+. ...  -..-....+|+||..
T Consensus       428 vIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal  470 (563)
T KOG1024|consen  428 VIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEAL  470 (563)
T ss_pred             eehhheeEEeccchhccccCcccccccCCCCCCcccccCHHHH
Confidence            9999999999999999754322 111  111222347888753

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.74  E-value=4.8e-17  Score=113.94  Aligned_cols=138  Identities=13%  Similarity=0.135  Sum_probs=110.0

Q ss_pred             ccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCC--CceeeeccccccccccCCCCceEEEE
Q 028629           28 TSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRH--CHLVSALGHCFECYFDDSSVSRIFLI  105 (206)
Q Consensus        28 ~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h--~~i~~~~~~~~~~~~~~~~~~~~~lv  105 (206)
                      ..+.++.|.++.||++... +..+++|.......  ...+..|...++.+.+  .++++++.....       .+..+++
T Consensus         2 ~~~~i~~g~~~~v~~~~~~-~~~~~iK~~~~~~~--~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~-------~~~~~~v   71 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTK-DEDYVLKINPSREK--GADREREVAILQLLARKGLPVPKVLASGES-------DGWSYLL   71 (155)
T ss_pred             cceecccccccceEEEEec-CCeEEEEecCCCCc--hhHHHHHHHHHHHHHHcCCCCCeEEEEcCC-------CCccEEE
Confidence            4577999999999999985 47899998864433  4578889999999976  477777665533       3568999


Q ss_pred             EeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccc
Q 028629          106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       106 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                      +||+.+..+...          +......++.+++.++..+|.....+++|+|++|.||++++.+.+++.||+.+.....
T Consensus        72 ~e~~~g~~~~~~----------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~~~  141 (155)
T cd05120          72 MEWIEGETLDEV----------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYGPP  141 (155)
T ss_pred             EEecCCeecccC----------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccCCCh
Confidence            999988666543          4556677889999999999984334799999999999999989999999999876543

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.71  E-value=2.7e-16  Score=118.86  Aligned_cols=141  Identities=16%  Similarity=0.218  Sum_probs=103.7

Q ss_pred             cceec-cCcceeEEEEEEeCCcEEEEEEeecCC-------------CccHHHHHHHHHHHhccCCCce--eeeccccccc
Q 028629           29 SAFMG-EGSKGQMYRGRLKNGTFIAIRCLKMKK-------------SHSTRNFMHHIELISKLRHCHL--VSALGHCFEC   92 (206)
Q Consensus        29 ~~~lg-~g~~g~v~~~~~~~~~~vaiK~~~~~~-------------~~~~~~~~~e~~~l~~l~h~~i--~~~~~~~~~~   92 (206)
                      ...|| .|+.|.||.+... +..+++|.+....             ......+.+|++++..+.|+++  +...++... 
T Consensus        36 ~~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~-  113 (239)
T PRK01723         36 ARVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVV-  113 (239)
T ss_pred             CceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeee-
Confidence            45576 7888888988874 7788888875321             1123457889999999988775  445544322 


Q ss_pred             cccCCCCceEEEEEeecCC-CCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc
Q 028629           93 YFDDSSVSRIFLIFEYVPN-GTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV  171 (206)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~  171 (206)
                        ........++++|++++ .+|.+++...    .++...    +.+++.++.++|+   .||+|+||+|.|||++.++.
T Consensus       114 --~~~~~~~~~lV~e~l~G~~~L~~~l~~~----~l~~~~----~~~i~~~l~~lH~---~GI~HrDlkp~NILv~~~~~  180 (239)
T PRK01723        114 --RHGLFYRADILIERIEGARDLVALLQEA----PLSEEQ----WQAIGQLIARFHD---AGVYHADLNAHNILLDPDGK  180 (239)
T ss_pred             --ecCcceeeeEEEEecCCCCCHHHHHhcC----CCCHHH----HHHHHHHHHHHHH---CCCCCCCCCchhEEEcCCCC
Confidence              00111234699999997 6898887653    244432    5689999999999   79999999999999998889


Q ss_pred             eeEccCCcccccc
Q 028629          172 AKISSYNLPLLAE  184 (206)
Q Consensus       172 ~kl~df~~a~~~~  184 (206)
                      ++|+|||.+....
T Consensus       181 v~LIDfg~~~~~~  193 (239)
T PRK01723        181 FWLIDFDRGELRT  193 (239)
T ss_pred             EEEEECCCcccCC
Confidence            9999999997654

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=5.8e-17  Score=140.00  Aligned_cols=166  Identities=19%  Similarity=0.237  Sum_probs=122.7

Q ss_pred             HhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccC---CCceeeeccccccccccCCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR---HCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~---h~~i~~~~~~~~~~~~~~~~   98 (206)
                      -...|.+.+.+|.|++|.||.|...+|+.||+|+-+.... .  +|.-=.+++.+|+   -+.|+.+......       
T Consensus       696 ~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~-W--EfYI~~q~~~RLk~~~~~~~~~~~~a~~~-------  765 (974)
T KOG1166|consen  696 GGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNP-W--EFYICLQVMERLKPQMLPSIMHISSAHVF-------  765 (974)
T ss_pred             cceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCc-e--eeeehHHHHHhhchhhhcchHHHHHHHcc-------
Confidence            3467889999999999999999987899999998764321 1  0111122333333   2334444443332       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec-------CCCc
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD-------QNLV  171 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~-------~~~~  171 (206)
                      .+..++++||.+.|+|.+++...   ..+++.....++.|++..+..||.   .+||||||||.|+||.       +...
T Consensus       766 ~~~S~lv~ey~~~Gtlld~~N~~---~~m~e~lv~~~~~qml~ive~lH~---~~IIHgDiKPDNfll~~~~~~~~~~~~  839 (974)
T KOG1166|consen  766 QNASVLVSEYSPYGTLLDLINTN---KVMDEYLVMFFSCQMLRIVEHLHA---MGIIHGDIKPDNFLLRREICADSDSKG  839 (974)
T ss_pred             CCcceeeeeccccccHHHhhccC---CCCCchhhhHHHHHHHHHHHHHHh---cceecccCCcceeEeecccCCCCcccc
Confidence            44578999999999999999854   569999999999999999999999   8999999999999995       2357


Q ss_pred             eeEccCCccc---cccccccccccccCccccCCCC
Q 028629          172 AKISSYNLPL---LAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       172 ~kl~df~~a~---~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      ++|+|||.+-   +..+..+....++|-++-.+|.
T Consensus       840 l~lIDfG~siDm~lfp~~~~F~~~~~td~f~C~EM  874 (974)
T KOG1166|consen  840 LYLIDFGRSIDMKLFPDGTKFKAVWHTDLFDCIEM  874 (974)
T ss_pred             eEEEecccceeeeEcCCCcEEeeeeccccchhHHH
Confidence            8999999994   3344445555677777766664

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.69  E-value=2.4e-17  Score=144.09  Aligned_cols=119  Identities=16%  Similarity=0.148  Sum_probs=84.7

Q ss_pred             CceeeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCC
Q 028629           80 CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNL  159 (206)
Q Consensus        80 ~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl  159 (206)
                      .||..+.+.+.....+......++.++|++ +++|.+++....  ..+++..++.++.||+.||.|||+   .+|+||||
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~---~gIvHrDl  106 (793)
T PLN00181         33 DYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNPD--RSVDAFECFHVFRQIVEIVNAAHS---QGIVVHNV  106 (793)
T ss_pred             HHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhccc--ccccHHHHHHHHHHHHHHHHHHHh---CCeeeccC
Confidence            466666666533222222234577788887 559999997532  458999999999999999999999   79999999


Q ss_pred             ccccEEecC-------------------CCceeEccCCccccccccc-----------------cccccccCccccCCCC
Q 028629          160 KITDILLDQ-------------------NLVAKISSYNLPLLAENAE-----------------KVGHVTPYSGSINPTN  203 (206)
Q Consensus       160 ~p~nil~~~-------------------~~~~kl~df~~a~~~~~~~-----------------~~~~~~~~~~y~aPE~  203 (206)
                      ||+||||+.                   ++.+|++|||+++......                 ......+|++|||||.
T Consensus       107 KP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~  186 (793)
T PLN00181        107 RPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSPEE  186 (793)
T ss_pred             CchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceEChhh
Confidence            999999954                   4566777777776432100                 0111357888999997


Q ss_pred             C
Q 028629          204 S  204 (206)
Q Consensus       204 ~  204 (206)
                      .
T Consensus       187 ~  187 (793)
T PLN00181        187 D  187 (793)
T ss_pred             h
Confidence            5

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.63  E-value=2.1e-15  Score=123.17  Aligned_cols=143  Identities=17%  Similarity=0.176  Sum_probs=96.6

Q ss_pred             cceeccCcceeEEEEEEeCCcEEEEEEeecCCCccH----------------------------------------HHHH
Q 028629           29 SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST----------------------------------------RNFM   68 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~----------------------------------------~~~~   68 (206)
                      .+.||+|++|+||+|+.++|+.||||+.........                                        -++.
T Consensus       122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            357999999999999998999999999864311100                                        0133


Q ss_pred             HHHHHHhcc----CCCceeeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHH-HH
Q 028629           69 HHIELISKL----RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVAR-GI  143 (206)
Q Consensus        69 ~e~~~l~~l----~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~-~l  143 (206)
                      +|...+.++    ++.+-+.+..++.+      ..+..+++|||++|.+|.+.......  ..+   ...++.+++. .+
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~------~~~~~vLvmE~i~G~~L~~~~~~~~~--~~~---~~~ia~~~~~~~l  270 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWD------RTSERVLTMEWIDGIPLSDIAALDEA--GLD---RKALAENLARSFL  270 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehh------hcCCceEEEEeECCcccccHHHHHhc--CCC---HHHHHHHHHHHHH
Confidence            344444444    22222233232211      12346899999999999887653211  122   2345555555 46


Q ss_pred             HHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccc
Q 028629          144 QFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       144 ~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                      ..+|.   .|++|+|++|.||++++++.++++|||++..+++
T Consensus       271 ~ql~~---~g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~~  309 (437)
T TIGR01982       271 NQVLR---DGFFHADLHPGNIFVLKDGKIIALDFGIVGRLSE  309 (437)
T ss_pred             HHHHh---CCceeCCCCcccEEECCCCcEEEEeCCCeeECCH
Confidence            78888   7999999999999999999999999999987654

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.61  E-value=2.3e-16  Score=135.63  Aligned_cols=177  Identities=14%  Similarity=0.159  Sum_probs=128.3

Q ss_pred             ceeCHHHHHHHhc-CCcccceeccCcceeEEEEEEeCCcEEEEEEeecCC-CccHHHHHHHHHH--HhccCCCceeeecc
Q 028629           12 RTFSLEELEEATN-NFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK-SHSTRNFMHHIEL--ISKLRHCHLVSALG   87 (206)
Q Consensus        12 ~~~~~~~~~~~~~-~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~--l~~l~h~~i~~~~~   87 (206)
                      +.+....+..... .+...+.||.+.|=.|.+|..+.|. |++|++-+.. ....+.+.++++-  +...++||++++.-
T Consensus        10 Qi~~~e~yfsd~~~e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik~~l~~~pn~lPfqk   88 (1431)
T KOG1240|consen   10 QISPVEVYFSDLSVECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIKFALMKAPNCLPFQK   88 (1431)
T ss_pred             ccchHHHHhhcCccceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHHHHhhcCCcccchHH
Confidence            3333333333333 7888999999999999999988676 8888886554 3444444443332  44558999998877


Q ss_pred             ccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec
Q 028629           88 HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD  167 (206)
Q Consensus        88 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~  167 (206)
                      +...       ....|++=+|... +|.+++..+   +-+...+...|++|++.|+..+|.   .+|+|||||.+||||+
T Consensus        89 ~~~t-------~kAAylvRqyvkh-nLyDRlSTR---PFL~~iEKkWiaFQLL~al~qcH~---~gVcHGDIKsENILiT  154 (1431)
T KOG1240|consen   89 VLVT-------DKAAYLVRQYVKH-NLYDRLSTR---PFLVLIEKKWIAFQLLKALSQCHK---LGVCHGDIKSENILIT  154 (1431)
T ss_pred             HHHh-------hHHHHHHHHHHhh-hhhhhhccc---hHHHHHHHHHHHHHHHHHHHHHHH---cCccccccccceEEEe
Confidence            6543       4455666677755 899998877   558888899999999999999999   8999999999999999


Q ss_pred             CCCceeEccCCcccc----ccccccccccccC----ccccCCCC
Q 028629          168 QNLVAKISSYNLPLL----AENAEKVGHVTPY----SGSINPTN  203 (206)
Q Consensus       168 ~~~~~kl~df~~a~~----~~~~~~~~~~~~~----~~y~aPE~  203 (206)
                      ..+.+.|+||..=+.    .+++..-...--|    ..|.|||.
T Consensus       155 SWNW~~LtDFAsFKPtYLPeDNPadf~fFFDTSrRRtCYiAPER  198 (1431)
T KOG1240|consen  155 SWNWLYLTDFASFKPTYLPEDNPADFTFFFDTSRRRTCYIAPER  198 (1431)
T ss_pred             eechhhhhcccccCCccCCCCCcccceEEEecCCceeeecChHh
Confidence            999999999976543    2222222222222    23999995

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=1.2e-15  Score=128.57  Aligned_cols=165  Identities=18%  Similarity=0.255  Sum_probs=121.7

Q ss_pred             cccceeccCcceeEEEEEEe-CCcEEEEEEeec---CC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           27 DTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKM---KK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        27 ~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~---~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .....+|.|.+|.++.+... ..+.+..|....   ..   ......+..|..+-..+.|+|++.....+.+       .
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~-------~  393 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQE-------I  393 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhh-------c
Confidence            46678899999977777744 333344443221   11   1111225567777788899999777766654       1


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ....-.|||+++ +|..++...   ..++...+-.++.|++.|+.|+|.   .|+.|||+|++|++++.++.+||+|||.
T Consensus       394 ~~~~~~mE~~~~-Dlf~~~~~~---~~~~~~e~~c~fKqL~~Gv~y~h~---~GiahrdlK~enll~~~~g~lki~Dfg~  466 (601)
T KOG0590|consen  394 DGILQSMEYCPY-DLFSLVMSN---GKLTPLEADCFFKQLLRGVKYLHS---MGLAHRDLKLENLLVTENGILKIIDFGA  466 (601)
T ss_pred             ccchhhhhcccH-HHHHHHhcc---cccchhhhhHHHHHHHHHHHHHHh---cCceeccCccccEEEecCCceEEeecCc
Confidence            222233999999 999988875   247888889999999999999999   8999999999999999999999999999


Q ss_pred             cccccccccc-----cccccCccccCCCCCC
Q 028629          180 PLLAENAEKV-----GHVTPYSGSINPTNSA  205 (206)
Q Consensus       180 a~~~~~~~~~-----~~~~~~~~y~aPE~~~  205 (206)
                      +.+..-+...     .-..|...|+|||...
T Consensus       467 ~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~  497 (601)
T KOG0590|consen  467 ASVFRYPWEKNIHESSGIVGSDPYLAPEVLT  497 (601)
T ss_pred             ceeeccCcchhhhhhcCcccCCcCcCccccc
Confidence            9877654433     3357778899999764

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.53  E-value=1.1e-15  Score=124.88  Aligned_cols=157  Identities=17%  Similarity=0.213  Sum_probs=127.8

Q ss_pred             eccCcceeEEEEEE----eCCcEEEEEEeecCCCc--cHHHHHHHHHHHhccC-CCceeeeccccccccccCCCCceEEE
Q 028629           32 MGEGSKGQMYRGRL----KNGTFIAIRCLKMKKSH--STRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        32 lg~g~~g~v~~~~~----~~~~~vaiK~~~~~~~~--~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +|+|.+|.|++++-    ..|..+++|+.++....  .......|-.++..++ |+.++++...+..       ....++
T Consensus         2 lg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt-------~~kl~l   74 (612)
T KOG0603|consen    2 LGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQT-------DGKLYL   74 (612)
T ss_pred             CCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeecc-------ccchhH
Confidence            68999999998772    24778899988765321  1124455777888886 9999999887765       678999


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      ++++..++.+...+...   ...+......+...++.++.++|.   .+++++|+|++||+++.+|.+++.|||+++..-
T Consensus        75 ~ld~~rgg~lft~l~~~---~~f~~~~~~~~~aelaLald~lh~---l~iiyrd~k~enilld~~Ghi~~tdfglske~v  148 (612)
T KOG0603|consen   75 ILDFLRGGDLFTRLSKE---VMFDELDVAFYLAELALALDHLHK---LGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAV  148 (612)
T ss_pred             hhhhcccchhhhccccC---CchHHHHHHHHHHHHHHHHhhcch---hHHHHhcccccceeecccCccccCCchhhhHhH
Confidence            99999999998887766   347777778888899999999999   899999999999999999999999999998765


Q ss_pred             ccccccccccCccccCCCCC
Q 028629          185 NAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       185 ~~~~~~~~~~~~~y~aPE~~  204 (206)
                      .....   +|+..|||||-.
T Consensus       149 ~~~~~---cgt~eymApEI~  165 (612)
T KOG0603|consen  149 KEKIA---CGTYEYRAPEII  165 (612)
T ss_pred             hhhhc---ccchhhhhhHhh
Confidence            54433   899999999953

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.52  E-value=4e-14  Score=117.42  Aligned_cols=146  Identities=14%  Similarity=0.141  Sum_probs=92.2

Q ss_pred             hcCCcccceeccCcceeEEEEEEeC-CcEEEEEEeecCCCc----------------------------------cHHH-
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSH----------------------------------STRN-   66 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~-~~~vaiK~~~~~~~~----------------------------------~~~~-   66 (206)
                      ...|+. +.+|+|++|+|++|+.++ |+.||+|+.......                                  ..+. 
T Consensus       119 F~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l  197 (537)
T PRK04750        119 FDDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTL  197 (537)
T ss_pred             HHhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHH
Confidence            345776 789999999999999885 999999999743210                                  0111 


Q ss_pred             -----HHHHHHHHhccC----CCceeeeccccccccccCCCCceEEEEEeecCCCCHHHHH--hcCC-CCcccCHHHHHH
Q 028629           67 -----FMHHIELISKLR----HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI--SEGH-AWQSLTWTQRIS  134 (206)
Q Consensus        67 -----~~~e~~~l~~l~----h~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~--~~~~-~~~~~~~~~~~~  134 (206)
                           +.+|...+.++.    +.+.+.+..++.+      -.+..+++|||++|+.+.+.-  .... ....+.......
T Consensus       198 ~~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d------~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~  271 (537)
T PRK04750        198 HDELDLMREAANASQLRRNFEDSDMLYVPEVYWD------YCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEV  271 (537)
T ss_pred             HHhhCHHHHHHHHHHHHHHccCCCCeecceeecc------cCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHH
Confidence                 233333333331    2222222222211      123567999999999998743  2211 001233333333


Q ss_pred             HHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC----ceeEccCCccccccc
Q 028629          135 AAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL----VAKISSYNLPLLAEN  185 (206)
Q Consensus       135 ~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~----~~kl~df~~a~~~~~  185 (206)
                      ++.|+.       .   .|++|+|++|.||+++.++    ++++.|||++...+.
T Consensus       272 ~~~Qif-------~---~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~  316 (537)
T PRK04750        272 FFTQVF-------R---DGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNK  316 (537)
T ss_pred             HHHHHH-------h---CCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECCH
Confidence            444443       4   5999999999999999887    999999999986654

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.50  E-value=1.2e-13  Score=99.01  Aligned_cols=134  Identities=13%  Similarity=0.026  Sum_probs=94.7

Q ss_pred             cceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCcee-eeccccccccccCCCCceEEEEEe
Q 028629           29 SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV-SALGHCFECYFDDSSVSRIFLIFE  107 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~-~~~~~~~~~~~~~~~~~~~~lv~e  107 (206)
                      .+.++.|..+.||++... +..+++|....... ....+..|...++.+.+.+++ +++...         ....+++||
T Consensus         3 ~~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~P~~~~~~---------~~~~~lv~e   71 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTE-LLINRENEAENSKLAAEAGIGPKLYYFD---------PETGVLITE   71 (170)
T ss_pred             eeecCCcccCceEEEEEC-CeEEEEEeCCCCcc-cccCHHHHHHHHHHHHHhCCCCceEEEe---------CCCCeEEEE
Confidence            456788999999999875 77899998754432 223456788888888655543 333322         123478999


Q ss_pred             ecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCC--CCceeccCCccccEEecCCCceeEccCCccccccc
Q 028629          108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGI--VPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       108 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                      ++++.++.+.  .     ..    ...++.+++.++..||...  ..+++|+|++|.||+++ ++.++++||+.+.....
T Consensus        72 ~i~G~~l~~~--~-----~~----~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~~~~  139 (170)
T cd05151          72 FIEGSELLTE--D-----FS----DPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGMNDP  139 (170)
T ss_pred             ecCCCccccc--c-----cc----CHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccCCCh
Confidence            9999877543  0     01    1234678999999999831  11259999999999999 66899999999976543

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.49  E-value=1.8e-13  Score=104.84  Aligned_cols=175  Identities=15%  Similarity=0.223  Sum_probs=106.2

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccC----------CCceeeeccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLR----------HCHLVSALGH   88 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~----------h~~i~~~~~~   88 (206)
                      ..+...++.||.|+++.||.+... +++.+++|+.....   ....+.+.+|......+.          |-.++...+.
T Consensus        11 ~r~l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~   90 (288)
T PF14531_consen   11 PRTLVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDL   90 (288)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEE
T ss_pred             ceEEEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEE
Confidence            345677889999999999999987 79999999886544   223445666654444421          1112111111


Q ss_pred             ccc----ccccCCC-Cc-----eEEEEEeecCCCCHHHHHhc----CCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCce
Q 028629           89 CFE----CYFDDSS-VS-----RIFLIFEYVPNGTLRSWISE----GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGV  154 (206)
Q Consensus        89 ~~~----~~~~~~~-~~-----~~~lv~e~~~~~~L~~~~~~----~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i  154 (206)
                      ..-    ..+.... ..     +.+++|.-+.. +|.+++..    ......+....+..+..|+++.+++||.   .|+
T Consensus        91 ~~i~~~~~~~~~~~~~~~~~v~n~~~l~P~~~~-dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~---~Gl  166 (288)
T PF14531_consen   91 LRIPGKPPFFERGPGQSIYWVLNRFLLMPRAQG-DLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHS---YGL  166 (288)
T ss_dssp             EEETTS-SEEEECETTEEEEEESEEEEEE--SE-EHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH---TTE
T ss_pred             EEEcCCCcceecCCCCccceeehhhhccchhhh-cHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhh---cce
Confidence            100    0000000 01     34667776644 88777642    1111345556667778999999999999   899


Q ss_pred             eccCCccccEEecCCCceeEccCCccccccccccccccccCccccCCCC
Q 028629          155 FSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       155 ~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      +|+||+|+|++++++|.+.|+||+.....+.....  ...+..|.+||.
T Consensus       167 VHgdi~~~nfll~~~G~v~Lg~F~~~~r~g~~~~~--~~~~~~~~PPe~  213 (288)
T PF14531_consen  167 VHGDIKPENFLLDQDGGVFLGDFSSLVRAGTRYRC--SEFPVAFTPPEL  213 (288)
T ss_dssp             EEST-SGGGEEE-TTS-EEE--GGGEEETTEEEEG--GGS-TTTS-HHH
T ss_pred             EecccceeeEEEcCCCCEEEcChHHHeecCceeec--cCCCcccCChhh
Confidence            99999999999999999999999888766554333  344466777763

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.45  E-value=1.7e-12  Score=94.53  Aligned_cols=137  Identities=9%  Similarity=0.107  Sum_probs=96.9

Q ss_pred             ceeccCcceeEEEEEEeC-------CcEEEEEEeecCCC----------------------ccHHHH----HHHHHHHhc
Q 028629           30 AFMGEGSKGQMYRGRLKN-------GTFIAIRCLKMKKS----------------------HSTRNF----MHHIELISK   76 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~~-------~~~vaiK~~~~~~~----------------------~~~~~~----~~e~~~l~~   76 (206)
                      ..||.|.-+.||.|...+       +..+|+|+......                      ...+.+    .+|...|++
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            468899999999998542       47899998764210                      001122    379999999


Q ss_pred             cCC--CceeeeccccccccccCCCCceEEEEEeecCCCCHHH-HHhcCCCCcccCHHHHHHHHHHHHHHHHHH-hcCCCC
Q 028629           77 LRH--CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRS-WISEGHAWQSLTWTQRISAAIGVARGIQFL-HTGIVP  152 (206)
Q Consensus        77 l~h--~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l-H~~~~~  152 (206)
                      +..  .++++++.+           ..-+++|||+.+..+.. .+..    ..++......+..+++.+|..+ |+   .
T Consensus        83 l~~~Gv~vP~pi~~-----------~~~~lvME~Ig~~~~~~~~Lkd----~~~~~~~~~~i~~~i~~~l~~l~H~---~  144 (197)
T cd05146          83 MQKAGIPCPEVVVL-----------KKHVLVMSFIGDDQVPAPKLKD----AKLNDEEMKNAYYQVLSMMKQLYKE---C  144 (197)
T ss_pred             HHHcCCCCCeEEEe-----------cCCEEEEEEcCCCCccchhhhc----cccCHHHHHHHHHHHHHHHHHHHHh---C
Confidence            854  455555543           24678999997643321 2222    2244455667788999999988 78   7


Q ss_pred             ceeccCCccccEEecCCCceeEccCCccccccc
Q 028629          153 GVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       153 ~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                      +++|+||++.||+++ ++.+.|+||+.+...+.
T Consensus       145 glVHGDLs~~NIL~~-~~~v~iIDF~qav~~~h  176 (197)
T cd05146         145 NLVHADLSEYNMLWH-DGKVWFIDVSQSVEPTH  176 (197)
T ss_pred             CeecCCCCHHHEEEE-CCcEEEEECCCceeCCC
Confidence            999999999999997 46799999999876654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.43  E-value=2.1e-12  Score=91.53  Aligned_cols=148  Identities=15%  Similarity=0.198  Sum_probs=106.7

Q ss_pred             ccceeccCcceeEEEEEEeCCcEEEEEEeecCC--------CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           28 TSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--------SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        28 ~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~--------~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ....+.+|+-+.|+++.+. |+.++||.-..+.        ....++..+|.+.+.++.--.|.-..-++.+       .
T Consensus        11 ~l~likQGAEArv~~~~~~-Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D-------~   82 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFS-GEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFID-------T   82 (229)
T ss_pred             cceeeeccceeeEeeeccC-CceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEe-------c
Confidence            6778899999999999985 7777777543221        1223567889999999875555433333333       2


Q ss_pred             ceEEEEEeecCC-CCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC---ceeEc
Q 028629          100 SRIFLIFEYVPN-GTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL---VAKIS  175 (206)
Q Consensus       100 ~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~---~~kl~  175 (206)
                      ..-.+.|||+++ .++.+++..... .....+....++.+|...+.-||.   .+++|+||..+||++.+++   .+.++
T Consensus        83 ~~~~i~ME~~~g~~~vk~~i~~~~~-~~~~d~~~~~~~~~iG~~igklH~---ndiiHGDLTTSNill~~~~~~~~~~lI  158 (229)
T KOG3087|consen   83 YGGQIYMEFIDGASTVKDFILSTME-DESEDEGLAELARRIGELIGKLHD---NDIIHGDLTTSNILLRSDGNQITPILI  158 (229)
T ss_pred             CCCeEEEEeccchhHHHHHHHHHcc-CcccchhHHHHHHHHHHHHHHhhh---CCeecccccccceEEecCCCcCceEEE
Confidence            345688999977 377887765432 233444447889999999999999   6999999999999998654   44799


Q ss_pred             cCCccccccccc
Q 028629          176 SYNLPLLAENAE  187 (206)
Q Consensus       176 df~~a~~~~~~~  187 (206)
                      |||++.....++
T Consensus       159 dfgls~~s~~~E  170 (229)
T KOG3087|consen  159 DFGLSSVSRLPE  170 (229)
T ss_pred             eecchhcccCcc
Confidence            999998665443

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.40  E-value=9.8e-14  Score=103.71  Aligned_cols=164  Identities=24%  Similarity=0.472  Sum_probs=121.0

Q ss_pred             CcccceeccCcceeEEEEEEeCCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEE
Q 028629           26 FDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~  103 (206)
                      .....+|.+...|+.|+|+++ |..++.|++....  ....++|..|.-.|+.+.||||+++.+.|.+       ..++.
T Consensus       192 lnl~tkl~e~hsgelwrgrwq-gndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacns-------ppnlv  263 (448)
T KOG0195|consen  192 LNLITKLAESHSGELWRGRWQ-GNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNS-------PPNLV  263 (448)
T ss_pred             hhhhhhhccCCCccccccccc-CcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccC-------CCCce
Confidence            344556778889999999998 4445556665332  3334567788888999999999999999976       67899


Q ss_pred             EEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceecc-CCccccEEecCCCceeEc--cCCcc
Q 028629          104 LIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSN-NLKITDILLDQNLVAKIS--SYNLP  180 (206)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~-dl~p~nil~~~~~~~kl~--df~~a  180 (206)
                      ++..|++.++|...+....+ --++..+...++.+++.|+.|||+.  .+++-+ -|....++||++.+.+|+  |--++
T Consensus       264 ~isq~mp~gslynvlhe~t~-vvvd~sqav~faldiargmaflhsl--ep~ipr~~lns~hvmidedltarismad~kfs  340 (448)
T KOG0195|consen  264 IISQYMPFGSLYNVLHEQTS-VVVDHSQAVRFALDIARGMAFLHSL--EPMIPRFYLNSKHVMIDEDLTARISMADTKFS  340 (448)
T ss_pred             EeeeeccchHHHHHHhcCcc-EEEecchHHHHHHHHHhhHHHHhhc--chhhhhhhcccceEEecchhhhheecccceee
Confidence            99999999999999987654 4577788899999999999999994  455443 588899999999776653  32222


Q ss_pred             ccccccccccccccCccccCCCCCCC
Q 028629          181 LLAENAEKVGHVTPYSGSINPTNSAR  206 (206)
Q Consensus       181 ~~~~~~~~~~~~~~~~~y~aPE~~~~  206 (206)
                      -.    + .+ ....+.+|+||...|
T Consensus       341 fq----e-~g-r~y~pawmspealqr  360 (448)
T KOG0195|consen  341 FQ----E-VG-RAYSPAWMSPEALQR  360 (448)
T ss_pred             ee----c-cc-cccCcccCCHHHHhc
Confidence            11    1 11 244557899987654

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.39  E-value=5.1e-12  Score=89.79  Aligned_cols=133  Identities=15%  Similarity=0.252  Sum_probs=97.3

Q ss_pred             eeccCcceeEEEEEEeCCcEEEEEEeecCC-C-------ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           31 FMGEGSKGQMYRGRLKNGTFIAIRCLKMKK-S-------HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        31 ~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~-~-------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      .+++|+-+.++.+.+- |..+++|.-..+. .       .......+|..++.++.-..|....-+.++       ....
T Consensus         3 ~i~~GAEa~i~~~~~~-g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD-------~~~~   74 (204)
T COG3642           3 LIKQGAEAIIYLTDFL-GLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVD-------PDNG   74 (204)
T ss_pred             hhhCCcceeEEeeecc-CcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEc-------CCCC
Confidence            4678999999999775 4456666443221 1       112356779999999875555433333333       4467


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      .++|||++|..|.+.+...          ...++..+..-+.-||.   .+|+|+||.++||++.... +.++|||++..
T Consensus        75 ~I~me~I~G~~lkd~l~~~----------~~~~~r~vG~~vg~lH~---~givHGDLTtsNiIl~~~~-i~~IDfGLg~~  140 (204)
T COG3642          75 LIVMEYIEGELLKDALEEA----------RPDLLREVGRLVGKLHK---AGIVHGDLTTSNIILSGGR-IYFIDFGLGEF  140 (204)
T ss_pred             EEEEEEeCChhHHHHHHhc----------chHHHHHHHHHHHHHHh---cCeecCCCccceEEEeCCc-EEEEECCcccc
Confidence            7999999998888888753          25677888888999999   7999999999999998654 89999999986


Q ss_pred             ccc
Q 028629          183 AEN  185 (206)
Q Consensus       183 ~~~  185 (206)
                      .+.
T Consensus       141 s~~  143 (204)
T COG3642         141 SDE  143 (204)
T ss_pred             ccc
Confidence            554

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.35  E-value=1.5e-11  Score=91.65  Aligned_cols=149  Identities=17%  Similarity=0.246  Sum_probs=104.5

Q ss_pred             cceeccCcceeEEEEEEeCCcEEEEEEeecCCC-ccHHHHHHHHHHHhccCCC--ceeeeccccccccccCCCCceEEEE
Q 028629           29 SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHC--HLVSALGHCFECYFDDSSVSRIFLI  105 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~--~i~~~~~~~~~~~~~~~~~~~~~lv  105 (206)
                      .+.++.|..+.+|++...+|..+++|....... .....+..|.++++.+.+.  ++.+++.+....    ...+..+++
T Consensus         3 ~~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~----~~~~~~~~v   78 (223)
T cd05154           3 VRQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDP----SVLGTPFYV   78 (223)
T ss_pred             ceecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCC----CccCCceEE
Confidence            356789999999999876668899998764432 1345678899999998753  345555544321    011356899


Q ss_pred             EeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCC-----------------------------------
Q 028629          106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGI-----------------------------------  150 (206)
Q Consensus       106 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~-----------------------------------  150 (206)
                      ||+++|.++.+.+..    ..++......++.+++.++..||+..                                   
T Consensus        79 ~e~i~G~~l~~~~~~----~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (223)
T cd05154          79 MERVDGRVLRDRLLR----PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEP  154 (223)
T ss_pred             EEEeCCEecCCCCCC----CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhccccc
Confidence            999998877664421    12555666666777777777776420                                   


Q ss_pred             ------------------CCceeccCCccccEEecC--CCceeEccCCccccccc
Q 028629          151 ------------------VPGVFSNNLKITDILLDQ--NLVAKISSYNLPLLAEN  185 (206)
Q Consensus       151 ------------------~~~i~h~dl~p~nil~~~--~~~~kl~df~~a~~~~~  185 (206)
                                        ...++|+|+.|.||++++  ++.+.|+||+.+.....
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~g~~  209 (223)
T cd05154         155 PAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATLGDP  209 (223)
T ss_pred             HHHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEeccccccCCh
Confidence                              145799999999999998  56789999999876543

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.31  E-value=2.2e-11  Score=88.36  Aligned_cols=127  Identities=14%  Similarity=0.195  Sum_probs=81.4

Q ss_pred             eEEEEEEeCCcEEEEEEeecCCCcc--------------------------HHHHHHHHHHHhccCCC--ceeeeccccc
Q 028629           39 QMYRGRLKNGTFIAIRCLKMKKSHS--------------------------TRNFMHHIELISKLRHC--HLVSALGHCF   90 (206)
Q Consensus        39 ~v~~~~~~~~~~vaiK~~~~~~~~~--------------------------~~~~~~e~~~l~~l~h~--~i~~~~~~~~   90 (206)
                      .||.|...+|..+|+|.........                          .....+|.+.|.++...  ++++++.+. 
T Consensus         1 ~Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~~-   79 (188)
T PF01163_consen    1 DVYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDYN-   79 (188)
T ss_dssp             EEEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEEE-
T ss_pred             CEEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEEe-
Confidence            3899998889999999876531100                          12357799999999765  455555432 


Q ss_pred             cccccCCCCceEEEEEeecC--CCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHH-HhcCCCCceeccCCccccEEec
Q 028629           91 ECYFDDSSVSRIFLIFEYVP--NGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQF-LHTGIVPGVFSNNLKITDILLD  167 (206)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~--~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~-lH~~~~~~i~h~dl~p~nil~~  167 (206)
                                .-.|+|||++  |..+..+....     ++.+....++.+++..+.. +|.   .|++|+||++.||+++
T Consensus        80 ----------~~~ivME~I~~~G~~~~~l~~~~-----~~~~~~~~~~~~il~~~~~~~~~---~givHGDLs~~NIlv~  141 (188)
T PF01163_consen   80 ----------RNVIVMEYIGEDGVPLPRLKDVD-----LSPEEPKELLEEILEEIIKMLHK---AGIVHGDLSEYNILVD  141 (188)
T ss_dssp             ----------TTEEEEE--EETTEEGGCHHHCG-----GGGSTHHHHHHHHHHHHHHHHHC---TTEEESS-STTSEEEE
T ss_pred             ----------CCEEEEEecCCCccchhhHHhcc-----ccchhHHHHHHHHHHHHHHHHHh---cCceecCCChhhEEee
Confidence                      3469999998  54554433321     2233445566677775555 567   7999999999999999


Q ss_pred             CCCceeEccCCccccccc
Q 028629          168 QNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       168 ~~~~~kl~df~~a~~~~~  185 (206)
                      ++ .+.++|||.+....+
T Consensus       142 ~~-~~~iIDf~qav~~~~  158 (188)
T PF01163_consen  142 DG-KVYIIDFGQAVDSSH  158 (188)
T ss_dssp             TT-CEEE--GTTEEETTS
T ss_pred             cc-eEEEEecCcceecCC
Confidence            87 999999999876554

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.30  E-value=6e-12  Score=90.62  Aligned_cols=76  Identities=14%  Similarity=0.094  Sum_probs=64.4

Q ss_pred             CCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccccccccc
Q 028629          112 GTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGH  191 (206)
Q Consensus       112 ~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~~~~~  191 (206)
                      |+|.+++....  ..+++..++.++.|++.||.|||+   .+      ||+||+++.++.+++  ||++.......    
T Consensus         1 GsL~~~l~~~~--~~l~~~~~~~i~~qi~~~L~~lH~---~~------kp~Nil~~~~~~~~~--fG~~~~~~~~~----   63 (176)
T smart00750        1 VSLADILEVRG--RPLNEEEIWAVCLQCLRALRELHR---QA------KSGNILLTWDGLLKL--DGSVAFKTPEQ----   63 (176)
T ss_pred             CcHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHh---cC------CcccEeEcCccceee--ccceEeecccc----
Confidence            58888887643  469999999999999999999999   45      999999999999999  99998765432    


Q ss_pred             cccCccccCCCCC
Q 028629          192 VTPYSGSINPTNS  204 (206)
Q Consensus       192 ~~~~~~y~aPE~~  204 (206)
                      ..++..|+|||..
T Consensus        64 ~~g~~~y~aPE~~   76 (176)
T smart00750       64 SRVDPYFMAPEVI   76 (176)
T ss_pred             CCCcccccChHHh
Confidence            2678999999975

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=99.26  E-value=1.1e-10  Score=94.54  Aligned_cols=144  Identities=17%  Similarity=0.230  Sum_probs=114.2

Q ss_pred             eeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEEEeecCCC-CHH
Q 028629           38 GQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNG-TLR  115 (206)
Q Consensus        38 g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~-~L~  115 (206)
                      .+.|++... +|..|++|++...+.........=++.++++.|.|++++.+++....|.+   ..+++|++|+++. +|.
T Consensus       290 ~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D---~SlvlvYDYyP~s~TL~  366 (655)
T KOG3741|consen  290 ITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGD---LSLVLVYDYYPSSPTLY  366 (655)
T ss_pred             ceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhccCc---ceEEEEEecCCCCchHH
Confidence            477888865 89999999995444333333334578899999999999999998655543   4699999999863 777


Q ss_pred             HHHhcCC------------CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccc
Q 028629          116 SWISEGH------------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  183 (206)
Q Consensus       116 ~~~~~~~------------~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~  183 (206)
                      +..-...            .+...+++.+|.++.|+..||.++|+   .|+..+-|.|.+|+++.+.+++|...|.-+++
T Consensus       367 d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHs---sGLAck~L~~~kIlv~G~~RIriS~C~i~Dvl  443 (655)
T KOG3741|consen  367 DLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHS---SGLACKTLDLKKILVTGKMRIRISGCGIMDVL  443 (655)
T ss_pred             HHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHh---cCceeecccHhHeEeeCcceEEEecccceeee
Confidence            6542210            12457889999999999999999999   79999999999999998889999999999887


Q ss_pred             cccc
Q 028629          184 ENAE  187 (206)
Q Consensus       184 ~~~~  187 (206)
                      .++.
T Consensus       444 ~~d~  447 (655)
T KOG3741|consen  444 QEDP  447 (655)
T ss_pred             cCCC
Confidence            6654

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.26  E-value=7.9e-12  Score=101.83  Aligned_cols=119  Identities=22%  Similarity=0.366  Sum_probs=97.4

Q ss_pred             HhccCCCceeeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCc
Q 028629           74 ISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG  153 (206)
Q Consensus        74 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~  153 (206)
                      |+.+.|.|+.++.+.++.       ++..+++++||+.|+|.+.+....  ..+++.....+.++++.||.|+|..   +
T Consensus         1 l~~l~h~n~~~f~g~~~~-------~~~~~~i~~~c~rGsl~D~i~~~~--~~~d~~F~~s~~rdi~~Gl~ylh~s---~   68 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVD-------GPEMIVIWEYCSRGSLLDILSNED--IKLDYFFILSFIRDISKGLAYLHNS---P   68 (484)
T ss_pred             CcccchhhhhhheeeEec-------CCceEEEEeeecCccHHhHHhccc--cCccHHHHHHHHHHHHHHHHHHhcC---c
Confidence            456789999999999987       467899999999999999998744  5699999999999999999999994   4


Q ss_pred             e-eccCCccccEEecCCCceeEccCCcccccccc---ccccccccCccccCCCCC
Q 028629          154 V-FSNNLKITDILLDQNLVAKISSYNLPLLAENA---EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       154 i-~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~---~~~~~~~~~~~y~aPE~~  204 (206)
                      | .|+.+++.|.+++..-.+|++|||+.......   ..........-|.|||..
T Consensus        69 i~~hg~l~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPell  123 (484)
T KOG1023|consen   69 IGYHGALKSSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELL  123 (484)
T ss_pred             ceeeeeeccccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHh
Confidence            4 99999999999999999999999999877531   111112233347888754

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.25  E-value=3.5e-11  Score=94.51  Aligned_cols=96  Identities=18%  Similarity=0.293  Sum_probs=76.6

Q ss_pred             CCCceeeecccccccccc--------------------CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHH
Q 028629           78 RHCHLVSALGHCFECYFD--------------------DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAI  137 (206)
Q Consensus        78 ~h~~i~~~~~~~~~~~~~--------------------~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~  137 (206)
                      +||||+.+..+|.+..-.                    ......+|++|..++. +|.+++..+.    .+.....-+..
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~~~----~s~r~~~~~la  348 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWTRH----RSYRTGRVILA  348 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhcCC----CchHHHHHHHH
Confidence            699999999987552100                    0224668999999866 9999998753    56667777889


Q ss_pred             HHHHHHHHHhcCCCCceeccCCccccEEec--CC--CceeEccCCccc
Q 028629          138 GVARGIQFLHTGIVPGVFSNNLKITDILLD--QN--LVAKISSYNLPL  181 (206)
Q Consensus       138 ~i~~~l~~lH~~~~~~i~h~dl~p~nil~~--~~--~~~kl~df~~a~  181 (206)
                      |++.|+.|||.   .++.|||+|..|||+.  ++  ..+.|+|||.+-
T Consensus       349 QlLEav~hL~~---hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcL  393 (598)
T KOG4158|consen  349 QLLEAVTHLHK---HGVAHRDLKSDNILLELDDDEIPQLVVADFGCCL  393 (598)
T ss_pred             HHHHHHHHHHH---ccchhhcccccceEEEecCCCCcEEEEcccceee
Confidence            99999999999   7999999999999995  33  477999999884

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=99.25  E-value=2.8e-10  Score=87.22  Aligned_cols=146  Identities=12%  Similarity=0.093  Sum_probs=98.6

Q ss_pred             ceeccCcceeEEEEEEeCCcEEEEEEeecCCCc-----------cHHHHHHHHHHHhccCCCceeee--ccccccccccC
Q 028629           30 AFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH-----------STRNFMHHIELISKLRHCHLVSA--LGHCFECYFDD   96 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~-----------~~~~~~~e~~~l~~l~h~~i~~~--~~~~~~~~~~~   96 (206)
                      +.+-......|.+... +|+.|.+|........           ....+.+|...+.++...+|...  ..+....  .+
T Consensus        28 e~v~~~~~rrvvr~~~-~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~--~~  104 (268)
T PRK15123         28 EVFRELEGRRTLRFEL-AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERG--SN  104 (268)
T ss_pred             cEEecCCCceEEEEEE-CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEec--CC
Confidence            3344444445666655 5788999976432211           11136788998888865554433  2232110  01


Q ss_pred             CCCceEEEEEeecCCC-CHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC-------
Q 028629           97 SSVSRIFLIFEYVPNG-TLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-------  168 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~-------  168 (206)
                      ......++|+|++++. +|.+++..... .+.+......++.+++..+.-||.   .|++|+|++++|||++.       
T Consensus       105 ~~~~~s~LVte~l~~~~sL~~~~~~~~~-~~~~~~~~~~ll~~la~~i~~LH~---~Gi~HgDL~~~NiLl~~~~~~~~~  180 (268)
T PRK15123        105 PATRTSFIITEDLAPTISLEDYCADWAT-NPPDPRLKRMLIKRVATMVRDMHA---AGINHRDCYICHFLLHLPFPGREE  180 (268)
T ss_pred             CccceeEEEEeeCCCCccHHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHH---CcCccCCCChhhEEEeccccCCCC
Confidence            1123578999999886 89988754211 335566777899999999999999   79999999999999985       


Q ss_pred             CCceeEccCCcccc
Q 028629          169 NLVAKISSYNLPLL  182 (206)
Q Consensus       169 ~~~~kl~df~~a~~  182 (206)
                      +..+.++||+.+..
T Consensus       181 ~~~~~LIDl~r~~~  194 (268)
T PRK15123        181 DLKLSVIDLHRAQI  194 (268)
T ss_pred             CceEEEEECCcccc
Confidence            46899999998854

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.22  E-value=1.8e-10  Score=95.63  Aligned_cols=121  Identities=17%  Similarity=0.222  Sum_probs=100.7

Q ss_pred             CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcc
Q 028629           47 NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQS  126 (206)
Q Consensus        47 ~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~  126 (206)
                      ++.+|.+..++...........+.++.|+.++||+|++++..+..       .+.+||++|.+.  .|...++.      
T Consensus        36 ~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~-------~~~~ylvTErV~--Pl~~~lk~------  100 (690)
T KOG1243|consen   36 DGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTEE-------EGTLYLVTERVR--PLETVLKE------  100 (690)
T ss_pred             cCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhcc-------cCceEEEeeccc--cHHHHHHH------
Confidence            788999998886665555667888999999999999999987755       568999999984  56666665      


Q ss_pred             cCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          127 LTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       127 ~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      +....+..-+.||+.||.+||+.  .+++|+++.-..++|++.|.-||++|.++....
T Consensus       101 l~~~~v~~Gl~qIl~AL~FL~~d--~~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~  156 (690)
T KOG1243|consen  101 LGKEEVCLGLFQILAALSFLNDD--CNLVHGNVCKDSVFVNESGEWKLGGLELVSKAS  156 (690)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcc--CCeeeccEeeeeEEEcCCCcEEEeeeEEEeccc
Confidence            33566666789999999999965  799999999999999999999999999886443

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=2.6e-12  Score=103.50  Aligned_cols=98  Identities=13%  Similarity=0.271  Sum_probs=84.7

Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ++++.|++|.-.+|.+|+.........++...+.++.|++.++.|  .    +.+|+|++|.||+...+..++|+|||+.
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y--k----~~ihrdlkp~nif~~~d~q~kIgDFgl~  403 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY--K----GLIHRDLKPSNIFFSDDDQLKIGDFGLV  403 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh--c----cchhhhccccccccccchhhhhhhhhhe
Confidence            589999999999999999865544667888889999999999999  4    8999999999999999999999999999


Q ss_pred             ccccccc-------cccccccCccccCCCCC
Q 028629          181 LLAENAE-------KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~-------~~~~~~~~~~y~aPE~~  204 (206)
                      .......       ....-.+|.+||+||++
T Consensus       404 ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi  434 (516)
T KOG1033|consen  404 TSQDKDETVAPAAASHTQQVGTLLYMSPEQI  434 (516)
T ss_pred             eecccCCcccchhhhhhhcccccccCCHHHH
Confidence            7665544       44556899999999985

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=99.19  E-value=2.4e-10  Score=86.02  Aligned_cols=149  Identities=13%  Similarity=0.146  Sum_probs=101.4

Q ss_pred             CHHHHHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCC----------------------ccHHHHHHHHH
Q 028629           15 SLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS----------------------HSTRNFMHHIE   72 (206)
Q Consensus        15 ~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~----------------------~~~~~~~~e~~   72 (206)
                      .+..+..-..-..++..||-|.-+.||.|..+.|.++|+|.=.....                      .......+|.+
T Consensus        82 AL~~l~~r~~ve~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~  161 (304)
T COG0478          82 ALHALVKRGIVEAIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFE  161 (304)
T ss_pred             HHHHHHHcChHHhhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHH
Confidence            33333333334567889999999999999998899999996332110                      00123567899


Q ss_pred             HHhccCCC--ceeeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCC
Q 028629           73 LISKLRHC--HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGI  150 (206)
Q Consensus        73 ~l~~l~h~--~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~  150 (206)
                      .|..+...  .+.+.++           .+...++||+++|-.|...-        ++.+..-.++..|+.-+.-+-+  
T Consensus       162 ~L~~L~~~G~~VP~P~~-----------~nRHaVvMe~ieG~eL~~~r--------~~~en~~~il~~il~~~~~~~~--  220 (304)
T COG0478         162 ALQRLYPEGVKVPKPIA-----------WNRHAVVMEYIEGVELYRLR--------LDVENPDEILDKILEEVRKAYR--  220 (304)
T ss_pred             HHHHhhhcCCCCCCccc-----------cccceeeeehcccceeeccc--------CcccCHHHHHHHHHHHHHHHHH--
Confidence            99988654  6666655           34678999999886554322        1122222333444444444445  


Q ss_pred             CCceeccCCccccEEecCCCceeEccCCccccccc
Q 028629          151 VPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       151 ~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                       .|++|+|+++-||+++++|.+.++||--+.....
T Consensus       221 -~GiVHGDlSefNIlV~~dg~~~vIDwPQ~v~~~h  254 (304)
T COG0478         221 -RGIVHGDLSEFNILVTEDGDIVVIDWPQAVPISH  254 (304)
T ss_pred             -cCccccCCchheEEEecCCCEEEEeCcccccCCC
Confidence             6999999999999999999999999988765543

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.14  E-value=1e-11  Score=104.97  Aligned_cols=172  Identities=17%  Similarity=0.213  Sum_probs=129.6

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe--CCcEEEEEEeecCC--CccHHHHHHHHHHHhccC-CCceeeeccccccccccC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK--NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDD   96 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~--~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~   96 (206)
                      ....|...+.||+|.++.+-.....  ....++.|.+....  .........|..+-..+. |.|++.+++...+     
T Consensus        18 ~~~~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~-----   92 (601)
T KOG0590|consen   18 PNSQYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSS-----   92 (601)
T ss_pred             ccccccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCC-----
Confidence            3567888889999999998888764  34456666665432  222233444666666665 9999999987755     


Q ss_pred             CCCceEEEEEeecCCCCHHHHH-hcCCCCcccCHHHHHHHHHHHHHHHHHHh-cCCCCceeccCCccccEEecCCC-cee
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWI-SEGHAWQSLTWTQRISAAIGVARGIQFLH-TGIVPGVFSNNLKITDILLDQNL-VAK  173 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~-~~~~~~~~~~~~~~~~~~~~i~~~l~~lH-~~~~~~i~h~dl~p~nil~~~~~-~~k  173 (206)
                        ....++.+++..++++.+.+ ....  ...+......++.|+..++.|+| .   .++.|+|++|+|.+++..+ .++
T Consensus        93 --~~~~~~~~~~s~g~~~f~~i~~~~~--~~~~~~~~~~~~~ql~s~l~~~H~~---~~~~h~~ikP~n~~l~~s~~~l~  165 (601)
T KOG0590|consen   93 --PRSYLLSLSYSDGGSLFSKISHPDS--TGTSSSSASRYLPQLNSGLSYLHPE---NGVTHRDIKPSNSLLDESGSALK  165 (601)
T ss_pred             --CcccccccCcccccccccccccCCc--cCCCCcchhhhhhhhccCccccCcc---cccccCCCCCccchhccCCCccc
Confidence              56788999999898888877 3321  24556667778999999999999 7   7999999999999999998 999


Q ss_pred             EccCCccccccc-c---cccccccc-CccccCCCCCC
Q 028629          174 ISSYNLPLLAEN-A---EKVGHVTP-YSGSINPTNSA  205 (206)
Q Consensus       174 l~df~~a~~~~~-~---~~~~~~~~-~~~y~aPE~~~  205 (206)
                      ++|||+|..... .   ......+| ++.|+|||...
T Consensus       166 ~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~  202 (601)
T KOG0590|consen  166 IADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLS  202 (601)
T ss_pred             CCCchhhccccccCCcceeeecccCCCCCCCCccccc
Confidence            999999976544 2   23444577 88899999754

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.13  E-value=4.3e-11  Score=103.49  Aligned_cols=134  Identities=17%  Similarity=0.278  Sum_probs=92.6

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ..+|..++.+..|++|.||.++++ +...+|+ .+.+++..           +     +||..+-             ++
T Consensus        82 e~df~~IklisngAygavylvrh~~trqrfa~-kiNkq~li-----------l-----Rnilt~a-------------~n  131 (1205)
T KOG0606|consen   82 ESDFNTIKLISNGAYGAVYLVRHKETRQRFAM-KINKQNLI-----------L-----RNILTFA-------------GN  131 (1205)
T ss_pred             ccccceeEeeccCCCCceeeeeccccccchhh-cccccchh-----------h-----hcccccc-------------CC
Confidence            478999999999999999999987 6778888 34423211           1     1233221             23


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++|      |+=...++..   .+++.+        .+.++.|+|+   .+|+|+|+||+|.+|+.-|.+|+.|||+.+
T Consensus       132 pfvv------gDc~tllk~~---g~lPvd--------mvla~Eylh~---ygivhrdlkpdnllIT~mGhiKlTDfgLsk  191 (1205)
T KOG0606|consen  132 PFVV------GDCATLLKNI---GPLPVD--------MVLAVEYLHS---YGIVHRDLKPDNLLITSMGHIKLTDFGLSK  191 (1205)
T ss_pred             ccee------chhhhhcccC---CCCcch--------hhHHhHhhcc---CCeecCCCCCCcceeeecccccccchhhhh
Confidence            4444      2333333332   223322        2778999999   899999999999999999999999999997


Q ss_pred             cccccc----------------cccccccCccccCCCCCCC
Q 028629          182 LAENAE----------------KVGHVTPYSGSINPTNSAR  206 (206)
Q Consensus       182 ~~~~~~----------------~~~~~~~~~~y~aPE~~~~  206 (206)
                      ......                ....++||+.|.|||..-|
T Consensus       192 ~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilr  232 (1205)
T KOG0606|consen  192 KGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILR  232 (1205)
T ss_pred             hhhhhccchhhhcchHHHHHHhhhccccCCccccChhhhhh
Confidence            432110                2233699999999998754

>PRK09902 hypothetical protein; Provisional

Probab=99.03  E-value=1.8e-08  Score=73.98  Aligned_cols=152  Identities=9%  Similarity=0.074  Sum_probs=106.3

Q ss_pred             cCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCC------CccHHHHHHHHHHHhccCCCcee--eecccccccccc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK------SHSTRNFMHHIELISKLRHCHLV--SALGHCFECYFD   95 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~------~~~~~~~~~e~~~l~~l~h~~i~--~~~~~~~~~~~~   95 (206)
                      ..+-..-.-+.|+-+-|+..... |..+-+|.-....      +.....+.+|+..+.++...++.  ++. ++-  .-.
T Consensus        18 ~~wve~pN~~rgG~SgV~r~~~~-g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pv-f~~--~~k   93 (216)
T PRK09902         18 GDWVEEPNYRRNGMSGVQCVERN-GKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIV-FGE--AVK   93 (216)
T ss_pred             CceecCCCcCCCCcceEEEEEeC-CcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccc-eee--eec
Confidence            34433444566888888887764 5567777654211      23456789999999999654443  332 211  001


Q ss_pred             CCCCceEEEEEeecCC-CCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc--e
Q 028629           96 DSSVSRIFLIFEYVPN-GTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV--A  172 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~--~  172 (206)
                      ....-..+||+|-+++ .+|.+++..... .+.+...+..+..+++.++.-||+   .|+.|+|+-+.||+++.++.  +
T Consensus        94 ~~~~~rA~LVTe~L~g~~~L~~~l~~~~~-~~~~~~~k~~il~~va~~ia~LH~---~Gv~Hgdly~khIll~~~g~~~v  169 (216)
T PRK09902         94 IEGEWRALLVTEDMAGFISIADWYAQHAV-SPYSDEVRQAMLKAVALAFKKMHS---VNRQHGCCYVRHIYVKTEGKAEA  169 (216)
T ss_pred             cCCceEEEEEEEeCCCCccHHHHHhcCCc-CCcchHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHhheeecCCCCeeE
Confidence            1123457899998764 489988865422 346778888899999999999999   89999999999999986666  9


Q ss_pred             eEccCCccccc
Q 028629          173 KISSYNLPLLA  183 (206)
Q Consensus       173 kl~df~~a~~~  183 (206)
                      +++||.-++..
T Consensus       170 ~lIDlEk~r~~  180 (216)
T PRK09902        170 GFLDLEKSRRR  180 (216)
T ss_pred             EEEEhhccchh
Confidence            99999988643

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.03  E-value=3.8e-09  Score=78.20  Aligned_cols=111  Identities=20%  Similarity=0.222  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHhccCCCce--eeeccccccccccCCCCceEEEEEeecCCC-CHHHHHhcCCCCcccCHHHHHHHHHHHHH
Q 028629           65 RNFMHHIELISKLRHCHL--VSALGHCFECYFDDSSVSRIFLIFEYVPNG-TLRSWISEGHAWQSLTWTQRISAAIGVAR  141 (206)
Q Consensus        65 ~~~~~e~~~l~~l~h~~i--~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~~i~~  141 (206)
                      ....+|...+..+...+|  ++...+.....   ......++++|.+++. +|.+++....   ..+......++.+++.
T Consensus        56 ~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~---~~~~~s~lite~l~~~~~L~~~~~~~~---~~~~~~~~~ll~~l~~  129 (206)
T PF06293_consen   56 SRAKREWRNLQRLREAGIPTPEPVAYGERRK---GGGYRSYLITEALPGAQDLRDLLQQWE---QLDPSQRRELLRALAR  129 (206)
T ss_pred             hHHHHHHHHHHHHHHcCCCCCcEEEEEEEcC---CCceeEEEEEEeCCCcccHHHHHHhhc---ccchhhHHHHHHHHHH
Confidence            457778888888865444  33344332211   1123568999999874 7999887642   2566677889999999


Q ss_pred             HHHHHhcCCCCceeccCCccccEEecCCC---ceeEccCCcccccc
Q 028629          142 GIQFLHTGIVPGVFSNNLKITDILLDQNL---VAKISSYNLPLLAE  184 (206)
Q Consensus       142 ~l~~lH~~~~~~i~h~dl~p~nil~~~~~---~~kl~df~~a~~~~  184 (206)
                      .+.-||+   .|++|+|+++.|||++.+.   .+.++||+.++...
T Consensus       130 ~i~~lH~---~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~~  172 (206)
T PF06293_consen  130 LIAKLHD---AGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFRP  172 (206)
T ss_pred             HHHHHHH---CcCCCCCCCcccEEEeCCCCceeEEEEcchhceeCC
Confidence            9999999   7999999999999999876   89999999987654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.97  E-value=7.2e-10  Score=90.81  Aligned_cols=169  Identities=15%  Similarity=0.152  Sum_probs=126.5

Q ss_pred             hcCCcccceecc--CcceeEEEEEE--e-CCcEEEEEEeec--CCCccHHHHHHHHHHHhccC-CCceeeeccccccccc
Q 028629           23 TNNFDTSAFMGE--GSKGQMYRGRL--K-NGTFIAIRCLKM--KKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYF   94 (206)
Q Consensus        23 ~~~~~~~~~lg~--g~~g~v~~~~~--~-~~~~vaiK~~~~--~~~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~   94 (206)
                      ...|.....+|.  |.+|.+|.+..  + ++..+|+|.=+.  ........-.+|+....+++ |+|.++.+..+..   
T Consensus       113 ~~~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~---  189 (524)
T KOG0601|consen  113 DQRFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEG---  189 (524)
T ss_pred             hhhcccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCccccc---
Confidence            345777888999  99999999886  4 678888887432  22344444455677666664 8888886666543   


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHH----HHHHHhcCCCCceeccCCccccEEecCC-
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVAR----GIQFLHTGIVPGVFSNNLKITDILLDQN-  169 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~----~l~~lH~~~~~~i~h~dl~p~nil~~~~-  169 (206)
                          .+..++-+|.+. .++.+......  ..++....+....+...    |+.++|.   .+++|.|++|.||+...+ 
T Consensus       190 ----~~~lfiqtE~~~-~sl~~~~~~~~--~~~p~~~l~~~~~~~~~~~~~al~~~hs---~~~~~~~~kp~~i~~~~~~  259 (524)
T KOG0601|consen  190 ----SGILFIQTELCG-ESLQSYCHTPC--NFLPDNLLWNSLRDWLSRDVTALSHLHS---NNIVHDDLKPANIFTTSDW  259 (524)
T ss_pred             ----CCcceeeecccc-chhHHhhhccc--ccCCchhhhhHHhhhhhcccccccccCC---Ccccccccchhheeccccc
Confidence                667899999885 58877776543  23667777888888888    9999999   799999999999999988 


Q ss_pred             CceeEccCCccccccccc------cccccccCccccCCCCC
Q 028629          170 LVAKISSYNLPLLAENAE------KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       170 ~~~kl~df~~a~~~~~~~------~~~~~~~~~~y~aPE~~  204 (206)
                      ..++++||++...+.+..      ....-.+..-|++||..
T Consensus       260 ~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~  300 (524)
T KOG0601|consen  260 TSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELL  300 (524)
T ss_pred             ceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhh
Confidence            899999999998776543      11112566779999864

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.96  E-value=6.7e-09  Score=86.12  Aligned_cols=142  Identities=13%  Similarity=0.153  Sum_probs=89.8

Q ss_pred             ceeccCcceeEEEEEEeCCcEEEEEEeecCCCcc----------------------------------HH------HHHH
Q 028629           30 AFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHS----------------------------------TR------NFMH   69 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~----------------------------------~~------~~~~   69 (206)
                      +.++.++-|+|++|++++|+.||||+....-...                                  .+      ++..
T Consensus       131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~  210 (517)
T COG0661         131 EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRR  210 (517)
T ss_pred             CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHH
Confidence            5688999999999999999999999876431111                                  00      1344


Q ss_pred             HHHHHhcc----CCCceeeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHH-HH
Q 028629           70 HIELISKL----RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARG-IQ  144 (206)
Q Consensus        70 e~~~l~~l----~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~-l~  144 (206)
                      |...+.++    +...-+.+-.++.+      ..+.-.++|||++|..+.+......  ...+...+   +..++++ +.
T Consensus       211 EA~n~~~~~~nf~~~~~v~VP~V~we------~t~~~VLtmE~i~Gi~i~d~~~l~~--~g~d~k~i---a~~~~~~f~~  279 (517)
T COG0661         211 EAANAERFRENFKDDPDVYVPKVYWE------YTTRRVLTMEWIDGIKISDIAALKS--AGIDRKEL---AELLVRAFLR  279 (517)
T ss_pred             HHHHHHHHHHHcCCCCCeEeceeehh------ccCCcEEEEEeeCCEecccHHHHHh--cCCCHHHH---HHHHHHHHHH
Confidence            55444444    12222223233221      1245679999999988887743221  22443332   2222222 22


Q ss_pred             HHhcCCCCceeccCCccccEEecCCCceeEccCCccccccc
Q 028629          145 FLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       145 ~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                      .+-.   -|++|.|.+|.||+++.++++.+.|||+...+++
T Consensus       280 q~~~---dgffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~~  317 (517)
T COG0661         280 QLLR---DGFFHADPHPGNILVRSDGRIVLLDFGIVGRLDP  317 (517)
T ss_pred             HHHh---cCccccCCCccceEEecCCcEEEEcCcceecCCH
Confidence            2333   4999999999999999999999999999976654

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.94  E-value=2.4e-09  Score=82.48  Aligned_cols=130  Identities=18%  Similarity=0.281  Sum_probs=95.5

Q ss_pred             HHhccCCCceeeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCC-CCcccCHHHHHHHHHHHHHHHHHHhcCCC
Q 028629           73 LISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGH-AWQSLTWTQRISAAIGVARGIQFLHTGIV  151 (206)
Q Consensus        73 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~  151 (206)
                      .+-++.|.|+++++.+|.+.-+.+  .....+++||++.|++.+++++.. +...+.......|+-||..||.|||. +.
T Consensus       120 nllqlvHsnlvkfH~yw~d~K~~e--~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs-~~  196 (458)
T KOG1266|consen  120 NLLQLVHSNLVKFHKYWTDKKYEE--KPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHS-CD  196 (458)
T ss_pred             HHHHHHHHHHHHHHHhhccccccc--ccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhc-cC
Confidence            344557999999999886644322  345678899999999999997632 22557777778899999999999998 44


Q ss_pred             CceeccCCccccEEecCCCceeEccCCccccccc-----cccccccccCccccCCCCCC
Q 028629          152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN-----AEKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       152 ~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~-----~~~~~~~~~~~~y~aPE~~~  205 (206)
                      .+++|+++....|++..++.+|++.-.-...-..     ........+-++|.|||+..
T Consensus       197 PpiihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~  255 (458)
T KOG1266|consen  197 PPIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGT  255 (458)
T ss_pred             CccccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCc
Confidence            7999999999999999999999865433221111     11223345678899999863

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.88  E-value=5e-08  Score=71.96  Aligned_cols=143  Identities=15%  Similarity=0.187  Sum_probs=88.9

Q ss_pred             HhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHH---------HHHHHHHHhccCC---Cceeeecccc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRN---------FMHHIELISKLRH---CHLVSALGHC   89 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~---------~~~e~~~l~~l~h---~~i~~~~~~~   89 (206)
                      ..++|...+.+.......|.+-.. +|..+++|..........+.         ..+.+..+.++..   .....++.+.
T Consensus        29 ~~~~~~~~kv~k~~~r~~ValIei-~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl~~  107 (229)
T PF06176_consen   29 LDNNYKIIKVFKNTKRNYVALIEI-DGKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYLAA  107 (229)
T ss_pred             HhCCceEEEeecCCCccEEEEEEE-CCcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCccccccceeee
Confidence            346788888887766554444444 58899999876443322222         1223333333322   2222322222


Q ss_pred             ccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC
Q 028629           90 FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN  169 (206)
Q Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~  169 (206)
                      ....++  -....+++|||++|..|.+...       +++    .++..+.+++..+|.   .|+.|+|+.|+|++++++
T Consensus       108 ekk~~~--~~~~~~ll~EYIeG~~l~d~~~-------i~e----~~~~ki~~~ikqlH~---~G~~HGD~hpgNFlv~~~  171 (229)
T PF06176_consen  108 EKKIFR--YTSSYVLLMEYIEGVELNDIED-------IDE----DLAEKIVEAIKQLHK---HGFYHGDPHPGNFLVSNN  171 (229)
T ss_pred             eeeecc--ceeEEEEEEEEecCeecccchh-------cCH----HHHHHHHHHHHHHHH---cCCccCCCCcCcEEEECC
Confidence            211111  1245678999999977765432       222    244567788999999   899999999999999955


Q ss_pred             CceeEccCCcccc
Q 028629          170 LVAKISSYNLPLL  182 (206)
Q Consensus       170 ~~~kl~df~~a~~  182 (206)
                      + ++++||+..+.
T Consensus       172 ~-i~iID~~~k~~  183 (229)
T PF06176_consen  172 G-IRIIDTQGKRM  183 (229)
T ss_pred             c-EEEEECccccc
Confidence            4 88999987754

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.82  E-value=4.6e-09  Score=86.19  Aligned_cols=149  Identities=12%  Similarity=0.171  Sum_probs=112.8

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe--CCcEEEEEEeecCCCccHHH--HHHHHHHHhcc-CCCceeeecccccccccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK--NGTFIAIRCLKMKKSHSTRN--FMHHIELISKL-RHCHLVSALGHCFECYFD   95 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~--~~~~vaiK~~~~~~~~~~~~--~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~   95 (206)
                      ....+|..+..|+.+.|+.++.+..+  ++..|++|.+.........+  -..|+-+...+ .|.+++..+..|..    
T Consensus       262 ~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~----  337 (524)
T KOG0601|consen  262 CKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQ----  337 (524)
T ss_pred             eecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccc----
Confidence            34568899999999999999998855  67788888876543333222  23344444444 36777766555543    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC-CceeE
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN-LVAKI  174 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~-~~~kl  174 (206)
                         ....++-.||++++++.......   +.+++..++.+..|++.++.++|+   ..++|+|++|+||++..+ +..++
T Consensus       338 ---~r~~~ip~e~~~~~s~~l~~~~~---~~~d~~~~~~~~~q~~~~l~~i~s---~~~~~~d~~psni~i~~~~~~~~~  408 (524)
T KOG0601|consen  338 ---LRQGYIPLEFCEGGSSSLRSVTS---QMLDEDPRLRLTAQILTALNVIHS---KLFVHLDVKPSNILISNDGFFSKL  408 (524)
T ss_pred             ---cccccCchhhhcCcchhhhhHHH---HhcCcchhhhhHHHHHhccccccc---hhhhcccccccceeeccchhhhhc
Confidence               34466888999998877665333   558888999999999999999999   899999999999999986 88899


Q ss_pred             ccCCcccc
Q 028629          175 SSYNLPLL  182 (206)
Q Consensus       175 ~df~~a~~  182 (206)
                      +||+....
T Consensus       409 ~~~~~~t~  416 (524)
T KOG0601|consen  409 GDFGCWTR  416 (524)
T ss_pred             cccccccc
Confidence            99999864

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=98.81  E-value=1e-07  Score=71.27  Aligned_cols=156  Identities=12%  Similarity=0.172  Sum_probs=98.5

Q ss_pred             eeCHHHHHHHhcCCccccee---ccCcceeEEEEEEeCCcEEEEEEeecCCCccH------------------------H
Q 028629           13 TFSLEELEEATNNFDTSAFM---GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST------------------------R   65 (206)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~l---g~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~------------------------~   65 (206)
                      ..+.+-+....++..+....   ++|.-+.||+|...++..+|+|++........                        .
T Consensus        34 ~~t~~~l~~L~~rg~i~~~~g~istGKEA~Vy~a~~~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~  113 (268)
T COG1718          34 KRTLETLRRLLSRGVITELVGCISTGKEANVYLAETGDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFA  113 (268)
T ss_pred             hHHHHHHHHHhcCCceeeeEeeecCCcceEEEeeccCCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHH
Confidence            34444555555666555554   45666789999877789999999876432211                        1


Q ss_pred             HHHHHHHHHhccC--CCceeeeccccccccccCCCCceEEEEEeecCCC-CHHHHHhcCCCCcccCHHHHHHHHHHHHHH
Q 028629           66 NFMHHIELISKLR--HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNG-TLRSWISEGHAWQSLTWTQRISAAIGVARG  142 (206)
Q Consensus        66 ~~~~e~~~l~~l~--h~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~  142 (206)
                      ....|...|.++.  +-.+.+.+.+.           .-.|+|||+... .-.-.+..    .++..+....+..++++.
T Consensus       114 W~~kEf~NL~R~~eAGVrvP~Pi~~~-----------~nVLvMEfIg~~g~pAP~LkD----v~~e~~e~~~~~~~~v~~  178 (268)
T COG1718         114 WARKEFRNLKRAYEAGVRVPEPIAFR-----------NNVLVMEFIGDDGLPAPRLKD----VPLELEEAEGLYEDVVEY  178 (268)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCceeec-----------CCeEEEEeccCCCCCCCCccc----CCcCchhHHHHHHHHHHH
Confidence            1355777777774  34444544433           236899999543 11111111    112222344455667777


Q ss_pred             HHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccccc
Q 028629          143 IQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENA  186 (206)
Q Consensus       143 l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~  186 (206)
                      +.-|-..  .+++|+||+.-|||+. ++.+.|+||+-|.....+
T Consensus       179 ~~~l~~~--a~LVHgDLSEyNiL~~-~~~p~iID~~QaV~~~hp  219 (268)
T COG1718         179 MRRLYKE--AGLVHGDLSEYNILVH-DGEPYIIDVSQAVTIDHP  219 (268)
T ss_pred             HHHHHHh--cCcccccchhhheEEE-CCeEEEEECccccccCCC
Confidence            6666553  6999999999999999 889999999999766643

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=98.78  E-value=8e-08  Score=79.71  Aligned_cols=138  Identities=14%  Similarity=0.211  Sum_probs=86.9

Q ss_pred             cceeccCcceeEEEEEEeCCcEEEEEEeecCCCcc-------------------------------HH------HHHHHH
Q 028629           29 SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHS-------------------------------TR------NFMHHI   71 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~-------------------------------~~------~~~~e~   71 (206)
                      .+.|+....++|++|+.++|+.||+|+-...-...                               .+      +|.+|.
T Consensus       166 ~~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA  245 (538)
T KOG1235|consen  166 EEPIAAASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEA  245 (538)
T ss_pred             cchhhhcchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHH
Confidence            35689999999999999999999999865321111                               01      134444


Q ss_pred             HHHhcc----CCCc------eeeeccccccccccCCCCceEEEEEeecCCCCHHHH--HhcCCCCcccCHHHHHHHHHHH
Q 028629           72 ELISKL----RHCH------LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW--ISEGHAWQSLTWTQRISAAIGV  139 (206)
Q Consensus        72 ~~l~~l----~h~~------i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~--~~~~~~~~~~~~~~~~~~~~~i  139 (206)
                      +..+++    .|-+      |.+++.-+         ...-.|+|||++|..+.+.  +...    ..+...+..   .+
T Consensus       246 ~Nae~~~~~f~~~~~~~~V~VP~Vy~~~---------st~RVLtME~~~G~~i~Dl~~i~~~----gi~~~~i~~---~l  309 (538)
T KOG1235|consen  246 KNAERFRENFKDFSLLTYVLVPKVYWDL---------STKRVLTMEYVDGIKINDLDAIDKR----GISPHDILN---KL  309 (538)
T ss_pred             HhHHHHHHHHHhcccccceeCCeehhhc---------CcceEEEEEecCCccCCCHHHHHHc----CCCHHHHHH---HH
Confidence            433333    3444      33333322         3467899999999755554  3332    244443333   23


Q ss_pred             HHHH-HHHhcCCCCceeccCCccccEEecC----CCceeEccCCccccccc
Q 028629          140 ARGI-QFLHTGIVPGVFSNNLKITDILLDQ----NLVAKISSYNLPLLAEN  185 (206)
Q Consensus       140 ~~~l-~~lH~~~~~~i~h~dl~p~nil~~~----~~~~kl~df~~a~~~~~  185 (206)
                      .++. .-+-.   .|++|.|.+|.||++.+    ++.+.+-|||+...+..
T Consensus       310 ~~~~~~qIf~---~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is~  357 (538)
T KOG1235|consen  310 VEAYLEQIFK---TGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVISH  357 (538)
T ss_pred             HHHHHHHHHh---cCCccCCCCCCcEEEecCCCCCccEEEEcccccccccH
Confidence            2221 11222   48999999999999994    57899999999876543

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.62  E-value=1e-06  Score=66.22  Aligned_cols=143  Identities=11%  Similarity=0.105  Sum_probs=81.1

Q ss_pred             ceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCce--eeeccccccccccCCCCceEEEEEe
Q 028629           30 AFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHL--VSALGHCFECYFDDSSVSRIFLIFE  107 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i--~~~~~~~~~~~~~~~~~~~~~lv~e  107 (206)
                      ..+++|..+.||+.   .+..+++|.....  .....+.+|.+.++.+...++  .+.+.+...       .+...++||
T Consensus         7 ~~i~~G~t~~~y~~---~~~~~VlR~~~~~--~~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~-------~~~~glv~e   74 (226)
T TIGR02172         7 TQTGEGGNGESYTH---KTGKWMLKLYNPG--FDKETIKREFDASRKVFSLGIPTPHPFDLVED-------GGRLGLIYE   74 (226)
T ss_pred             eeecCCCCcceeEe---cCCCEEEEeCCCC--CCHHHHHHHHHHHHHHHHcCCCCCceEEEEec-------CCeeeeeee
Confidence            56799999999984   2446778877532  234557889999988864433  455544422       344678999


Q ss_pred             ecCCCC-HHHHH--------------hc----CCCC--cccCHHHHHH-HHH----------HHHH-HHHHHhcC-CCCc
Q 028629          108 YVPNGT-LRSWI--------------SE----GHAW--QSLTWTQRIS-AAI----------GVAR-GIQFLHTG-IVPG  153 (206)
Q Consensus       108 ~~~~~~-L~~~~--------------~~----~~~~--~~~~~~~~~~-~~~----------~i~~-~l~~lH~~-~~~~  153 (206)
                      +++|.+ +.+.+              ..    -...  .......... +..          .+.. ...+|... ....
T Consensus        75 ~i~G~~~~~~~~~~~~~~~~~l~~~la~~l~~lH~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~  154 (226)
T TIGR02172        75 LIVGKRSFSRIISDNPSRLEEIAKIFAEMAKKLHSTKCDTSTFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTST  154 (226)
T ss_pred             ecCCccchhhhhcCCHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCCc
Confidence            998853 21111              00    0000  0011110000 000          0111 11222211 1135


Q ss_pred             eeccCCccccEEecCCCceeEccCCccccccc
Q 028629          154 VFSNNLKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       154 i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                      ++|+|+.|.||++++++ +.|+||+.+...++
T Consensus       155 ~~HgD~~~~Nii~~~~~-~~iIDwe~a~~Gdp  185 (226)
T TIGR02172       155 CLHGDFQIGNLITSGKG-TYWIDLGDFGYGNP  185 (226)
T ss_pred             eEecCCCCCcEEEcCCC-cEEEechhcCcCCH
Confidence            79999999999999887 99999999875543

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=98.56  E-value=1.4e-06  Score=65.28  Aligned_cols=149  Identities=13%  Similarity=0.140  Sum_probs=83.9

Q ss_pred             cceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCc--eeeeccccccccccCCCCceEEEEE
Q 028629           29 SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH--LVSALGHCFECYFDDSSVSRIFLIF  106 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~--i~~~~~~~~~~~~~~~~~~~~~lv~  106 (206)
                      ++.++.|..+.+|.....+ ..+++|.....  .....+..|..+++.+....  +.+++......    ......+++|
T Consensus         2 i~~l~~G~~n~~~~v~~~~-~~~vlK~~~~~--~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~----~~~~~~~~~~   74 (239)
T PF01636_consen    2 IRPLSGGFSNRVYRVTTDD-GRYVLKFYRPP--DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSD----EFNGFPYLLM   74 (239)
T ss_dssp             EEEEEESSSSEEEEEEETT-SEEEEEEESSH--HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEET----EETSEEEEEE
T ss_pred             CccCCCCCeeeEEEEEECC-cEEEEEEeCCC--CCHHHHHHHHHHHHHHHhcCCCCceEEeecccc----cccccceEEE
Confidence            4578889999999999865 68999987533  44567778888888885443  44555432221    1133578999


Q ss_pred             eecCCCCHHH----------------HHh---cC-CCCcccCHHH---------HHHH------------HHHHHH-HHH
Q 028629          107 EYVPNGTLRS----------------WIS---EG-HAWQSLTWTQ---------RISA------------AIGVAR-GIQ  144 (206)
Q Consensus       107 e~~~~~~L~~----------------~~~---~~-~~~~~~~~~~---------~~~~------------~~~i~~-~l~  144 (206)
                      +++++.++..                .+.   .. ..........         ....            ...+.. .+.
T Consensus        75 ~~i~g~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (239)
T PF01636_consen   75 EYIPGRPLDDELSPEQRPELLRQLGRALAQLHQVPPPFSPFADWPEWRLEFLRQLESWTARLRASELFDDLEELEERLLQ  154 (239)
T ss_dssp             EEESSEEHHHTSTHHHHHHHHHHHHHHHHHHHHSHTTCCCHTHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             EEeccccccccccccccccccccchhhhhhcccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHHH
Confidence            9999887776                111   11 0000000000         0000            011111 222


Q ss_pred             HHhc----CCCCceeccCCccccEEec-CCCceeEccCCcccccc
Q 028629          145 FLHT----GIVPGVFSNNLKITDILLD-QNLVAKISSYNLPLLAE  184 (206)
Q Consensus       145 ~lH~----~~~~~i~h~dl~p~nil~~-~~~~~kl~df~~a~~~~  184 (206)
                      .++.    .....++|+|+.|.||+++ +++.+.|+||+.+....
T Consensus       155 ~~~~~~~~~~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~~~~  199 (239)
T PF01636_consen  155 ELEALLPKPLPPVLIHGDLHPGNILVDPSDGRIGIIDFEDAGWGD  199 (239)
T ss_dssp             HHHHHHHCCSCEEEE-SS-SGGGEEEESSTTEEEE--GTT-EEEE
T ss_pred             HHHhhhccCCCcEEEEeccccccceeeeccceeEEEecccceECC
Confidence            3321    1225799999999999999 66777899999986543

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=98.53  E-value=1e-06  Score=62.69  Aligned_cols=133  Identities=14%  Similarity=0.185  Sum_probs=91.0

Q ss_pred             CcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceee-eccccccccccCCCCceEEE
Q 028629           26 FDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVS-ALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~-~~~~~~~~~~~~~~~~~~~l  104 (206)
                      -...+.|++|++|.||+|.+. |..+|+|+-..+  .....+..|.++|..+.-.++.+ ++.+.           .-++
T Consensus        24 ~~v~~~L~KG~~s~Vyl~~~~-~~~~a~Kvrr~d--s~r~~l~kEakiLeil~g~~~~p~vy~yg-----------~~~i   89 (201)
T COG2112          24 LRVEKELAKGTTSVVYLGEWR-GGEVALKVRRRD--SPRRNLEKEAKILEILAGEGVTPEVYFYG-----------EDFI   89 (201)
T ss_pred             hhhhhhhhcccccEEEEeecc-CceEEEEEecCC--cchhhHHHHHHHHHHhhhcCCCceEEEec-----------hhhh
Confidence            456678999999999999997 668888876543  33467888999999988766643 33322           2345


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCcc-ccEEecCCCceeEccCCccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKI-TDILLDQNLVAKISSYNLPLLA  183 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p-~nil~~~~~~~kl~df~~a~~~  183 (206)
                      .|||+.|..|.++....      +..++.    .++..-.-|-.   .||-|+.|+- ...++..+..+.|+||..|...
T Consensus        90 ~me~i~G~~L~~~~~~~------~rk~l~----~vlE~a~~LD~---~GI~H~El~~~~k~vlv~~~~~~iIDFd~At~k  156 (201)
T COG2112          90 RMEYIDGRPLGKLEIGG------DRKHLL----RVLEKAYKLDR---LGIEHGELSRPWKNVLVNDRDVYIIDFDSATFK  156 (201)
T ss_pred             hhhhhcCcchhhhhhcc------cHHHHH----HHHHHHHHHHH---hccchhhhcCCceeEEecCCcEEEEEccchhhc
Confidence            69999998888766542      222322    34444344444   7999998864 4455555558999999999854


Q ss_pred             cc
Q 028629          184 EN  185 (206)
Q Consensus       184 ~~  185 (206)
                      ..
T Consensus       157 ~~  158 (201)
T COG2112         157 KK  158 (201)
T ss_pred             cC
Confidence            43

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=98.52  E-value=4.7e-07  Score=65.97  Aligned_cols=106  Identities=17%  Similarity=0.242  Sum_probs=81.1

Q ss_pred             HHHHHHhccCC-CceeeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHh
Q 028629           69 HHIELISKLRH-CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLH  147 (206)
Q Consensus        69 ~e~~~l~~l~h-~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH  147 (206)
                      +|..+++.+++ +++++++|.|         +  .+.++|+...+++..........-..+|..+..+|.+++..+.+++
T Consensus         8 ~E~lll~~l~~~~~~pk~lG~C---------G--~~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~~l~   76 (188)
T PF12260_consen    8 NEPLLLQLLQGSEPFPKLLGSC---------G--RFYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLEELD   76 (188)
T ss_pred             cHHHHHHHcCCCCCCCCeeeEC---------C--CEEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHHHHHh
Confidence            47888888875 6999999988         2  3567899976544321000000023679999999999999999999


Q ss_pred             cCCCCceeccCCccccEEecCCCceeEccCCccccccc
Q 028629          148 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       148 ~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                      +++...+.-.|++|+|+.+++++++|+.|.+.+...+.
T Consensus        77 ~~~~~~~~lcDv~~~nfgv~~~~~lk~iDld~v~~~~~  114 (188)
T PF12260_consen   77 HGPLGFFYLCDVSPDNFGVNDDGRLKLIDLDDVFVEDK  114 (188)
T ss_pred             cCCCCcEEEeecchHHeEEeCCCcEEEEechhcchhHH
Confidence            97666788899999999999999999999998876543

Proteins in this uncharacterised family are described as transmembrane proteins.

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=98.43  E-value=4.2e-06  Score=63.50  Aligned_cols=142  Identities=13%  Similarity=0.072  Sum_probs=80.1

Q ss_pred             eccCcc-eeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccC-CCceeeeccccccccccCCCCceEEEEEeec
Q 028629           32 MGEGSK-GQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVSRIFLIFEYV  109 (206)
Q Consensus        32 lg~g~~-g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~  109 (206)
                      |..|.. ..||+.... +..+++|......   ...+..|+++++.+. +-.+.+++.+...       .+..+++||++
T Consensus         6 ~~~g~~~~~v~~~~~~-~~~~~vk~~~~~~---~~~~~~E~~~l~~l~~~~~vP~v~~~~~~-------~~~~~lv~e~i   74 (244)
T cd05150           6 VTEGQSGATVYRLDGK-NPGLYLKIAPSGP---TYELEREAERLRWLAGKLPVPEVIDYGSD-------DGRAWLLTSAV   74 (244)
T ss_pred             cCCCCCcCeEEEEcCC-CCcEEEEecCCCc---ccchHHHHHHHHHHHhcCCCCeEEEEEec-------CCccEEEEEee
Confidence            344555 678888764 4677888775332   345667888888874 3334455544422       24578999999


Q ss_pred             CCCCHHHHHh-------------------cCCC-CcccCHH--HHHHH-----------------------HHHHHHHHH
Q 028629          110 PNGTLRSWIS-------------------EGHA-WQSLTWT--QRISA-----------------------AIGVARGIQ  144 (206)
Q Consensus       110 ~~~~L~~~~~-------------------~~~~-~~~~~~~--~~~~~-----------------------~~~i~~~l~  144 (206)
                      +|.++.+...                   ..+. ..+....  .....                       ..++...+.
T Consensus        75 ~G~~l~~~~~~~~~~~~~~~l~~~l~~lH~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  154 (244)
T cd05150          75 PGVPAAALWEELEPERLVDALAEALRRLHALPVADCPFDRRLDRRLAEARARVENGLVDEDDFDDERRGWSAEELYAELE  154 (244)
T ss_pred             CCccHhHhhcccCHHHHHHHHHHHHHHHhcCCcccCCcchhHHHHHHHHHHHHhcCCcChhhCcHhhcCCCHHHHHHHHH
Confidence            9877664321                   0000 0011000  00000                       111111111


Q ss_pred             HHh-cCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          145 FLH-TGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       145 ~lH-~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      ... ......++|+|+.|.||+++++....|+||+.+...+
T Consensus       155 ~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~~gd  195 (244)
T cd05150         155 ATRPAEEDLVVTHGDACLPNIIVDPGKFSGFIDLGRLGVAD  195 (244)
T ss_pred             hhCCCcCceEEECCCCCCccEEEeCCcEEEEEEcccccccc
Confidence            111 0112468999999999999998778899999987544

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PLN02876 acyl-CoA dehydrogenase

Probab=98.25  E-value=2e-05  Score=69.99  Aligned_cols=81  Identities=19%  Similarity=0.299  Sum_probs=54.1

Q ss_pred             cceeccCcceeEEEEEEeCC---cEEEEEEeecCC-CccHHHHHHHHHHHhccC-CCce--eeeccccccccccCCCCce
Q 028629           29 SAFMGEGSKGQMYRGRLKNG---TFIAIRCLKMKK-SHSTRNFMHHIELISKLR-HCHL--VSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~~~---~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~-h~~i--~~~~~~~~~~~~~~~~~~~  101 (206)
                      .+.++.|.++.+|+....++   ..+++|+..... ......+.+|.++++.+. |.++  .+++.++.+.    +..+.
T Consensus        43 v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~----~v~G~  118 (822)
T PLN02876         43 VSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDA----SVIGT  118 (822)
T ss_pred             EEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCC----CcCCC
Confidence            56788898999999876543   467777654322 223456888999999995 5654  5656555331    11245


Q ss_pred             EEEEEeecCCCC
Q 028629          102 IFLIFEYVPNGT  113 (206)
Q Consensus       102 ~~lv~e~~~~~~  113 (206)
                      .|+|||+++|..
T Consensus       119 ~flVME~v~G~~  130 (822)
T PLN02876        119 AFYIMEYLEGRI  130 (822)
T ss_pred             ceEEEEecCCcc
Confidence            789999998754

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.25  E-value=1.5e-05  Score=64.15  Aligned_cols=169  Identities=11%  Similarity=0.078  Sum_probs=112.1

Q ss_pred             cccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCC-ceEEE
Q 028629           27 DTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSV-SRIFL  104 (206)
Q Consensus        27 ~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~-~~~~l  104 (206)
                      ..++.||+|+-+.+|..-.- +..|| |++.........+.   +..|.+. +||-+.. .-.|.....++... ..+-+
T Consensus        14 ~~gr~LgqGgea~ly~l~e~-~d~VA-KIYh~Pppa~~aqk---~a~la~~p~~p~~~~-rvaWPqa~L~G~~~~~~iGf   87 (637)
T COG4248          14 PPGRPLGQGGEADLYTLGEV-RDQVA-KIYHAPPPAAQAQK---VAELAATPDAPLLNY-RVAWPQATLHGGRRGKVIGF   87 (637)
T ss_pred             CCCccccCCccceeeecchh-hchhh-eeecCCCchHHHHH---HHHhccCCCCcchhh-hhcccHHHhhCCCccceeEE
Confidence            45677999999988865432 22344 76665544333332   2333333 4554432 22232222222223 33667


Q ss_pred             EEeecCCC-CHHHHHhc---CCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          105 IFEYVPNG-TLRSWISE---GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       105 v~e~~~~~-~L~~~~~~---~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      +|..+++. .+..++..   +...+..+|...+..++.++.+...||+   .|..-+|+.++|+|+++++.+.+.|-+.-
T Consensus        88 lmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~---~Gh~vGDVn~~~~lVsd~~~V~LVdsDsf  164 (637)
T COG4248          88 LMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHE---HGHVVGDVNQNSFLVSDDSKVVLVDSDSF  164 (637)
T ss_pred             ecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHh---cCCcccccCccceeeecCceEEEEcccce
Confidence            77777664 33333322   1223668999999999999999999999   79999999999999999999999987776


Q ss_pred             ccccccccccccccCccccCCCCC
Q 028629          181 LLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      .+..++.....-.+...|..||..
T Consensus       165 qi~~ng~~~~cpVg~~eftPPElQ  188 (637)
T COG4248         165 QINANGTLHLCPVGVSEFTPPELQ  188 (637)
T ss_pred             eeccCCceEecccCccccCCHHHh
Confidence            666666666667888899999964

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=98.18  E-value=2.8e-05  Score=58.62  Aligned_cols=145  Identities=13%  Similarity=0.089  Sum_probs=81.3

Q ss_pred             cceeccCcceeEEEEEEeC--CcEEEEEEeecCCCccHHHHHHHHHHHhccCCCcee-eeccccccccccCCCCceEEEE
Q 028629           29 SAFMGEGSKGQMYRGRLKN--GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV-SALGHCFECYFDDSSVSRIFLI  105 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~-~~~~~~~~~~~~~~~~~~~~lv  105 (206)
                      .+.|..|-...+|++...+  +..|++|........ .....+|..+++.+...++. +++..+         .  -.++
T Consensus         3 i~~l~gG~tN~~~~v~~~~~~~~~~vlR~~~~~~~~-~~d~~~E~~~~~~l~~~gl~P~v~~~~---------~--~~~l   70 (235)
T cd05157           3 FKRFTGGITNKLVKVSNKEDNQDAVLVRVYGNKTEL-IIDRERELRIHKLLSKHGLAPKLYATF---------Q--NGLI   70 (235)
T ss_pred             EEEcCCcccceEEEEEcCCCCCCeEEEEEccCCccc-eecHHHHHHHHHHHHhCCCCCeEEEEe---------C--CcEE
Confidence            3567778888999987653  678889976533222 12345688888888544443 333221         1  1379


Q ss_pred             EeecCCCCHHHH--------------Hh---cCCCCc--------ccC-HHHHHHHHHH---------------------
Q 028629          106 FEYVPNGTLRSW--------------IS---EGHAWQ--------SLT-WTQRISAAIG---------------------  138 (206)
Q Consensus       106 ~e~~~~~~L~~~--------------~~---~~~~~~--------~~~-~~~~~~~~~~---------------------  138 (206)
                      +||++|.++...              +.   ......        ... +..+..+...                     
T Consensus        71 ~e~i~G~~l~~~~~~~~~~~~~la~~l~~lH~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (235)
T cd05157          71 YEFIPGRTLEPEDLRNPKIYRLIARELAKLHSIKPPEAISSPGTPKPILWPTIRKWINLVPTEFKKPEKFQKKTKAISFE  150 (235)
T ss_pred             EEeeCCCcCCHHHccChHHHHHHHHHHHHHhcccccccccccCCCCCcHHHHHHHHHHHhHHhhccccchhhhhccccHH
Confidence            999988654321              11   000000        011 1121122111                     


Q ss_pred             -H---HHHHH-HHhcC-CCCceeccCCccccEEecC-CCceeEccCCccccccc
Q 028629          139 -V---ARGIQ-FLHTG-IVPGVFSNNLKITDILLDQ-NLVAKISSYNLPLLAEN  185 (206)
Q Consensus       139 -i---~~~l~-~lH~~-~~~~i~h~dl~p~nil~~~-~~~~kl~df~~a~~~~~  185 (206)
                       +   +..+. .+-.. ....++|+|+.+.||++++ ++.+.++||..|.....
T Consensus       151 ~l~~~~~~l~~~l~~~~~~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~~~~~  204 (235)
T cd05157         151 QLRDEISWLKELLSALNSPIVFCHNDLLSGNIIYNEEKNSVKFIDYEYAGYNYR  204 (235)
T ss_pred             HHHHHHHHHHHHhcccCCCEEEEcCCCCcCcEEEeCCCCCEEEEEcccCCcCch
Confidence             1   11111 11110 1146999999999999997 57899999998875544

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>TIGR02721 ycfN_thiK thiamine kinase

Probab=98.14  E-value=2.3e-05  Score=59.98  Aligned_cols=141  Identities=8%  Similarity=0.049  Sum_probs=77.3

Q ss_pred             eccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCcee-eeccccccccccCCCCceEEEEEeecC
Q 028629           32 MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV-SALGHCFECYFDDSSVSRIFLIFEYVP  110 (206)
Q Consensus        32 lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~-~~~~~~~~~~~~~~~~~~~~lv~e~~~  110 (206)
                      +..|-.+.+|+... ++..+++|...........+..+|..+++.+....+. +++...         .  -++++||++
T Consensus         4 ~~~G~tn~~y~~~~-~~~~~vlR~~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~i~~~---------~--~~~v~e~i~   71 (256)
T TIGR02721         4 LSGGLTNRSWRIEH-PGISFVWRPQSPVCKALGVDRQREYQILQALSALGLAPKPILVN---------E--HWLLVEWLE   71 (256)
T ss_pred             CCCcCcCCeEEEEe-CCccEEEeeCCcccccccCcHHHHHHHHHHHHhcCCCCceEEEe---------C--CEEEEEecc
Confidence            45677788998874 4677888876433222112356788888888654442 222211         1  258899998


Q ss_pred             CCCHHHH--------------Hh---cCCC-CcccCHH-HHHHHHHHH---------HHHHHHHhcC-----CCCceecc
Q 028629          111 NGTLRSW--------------IS---EGHA-WQSLTWT-QRISAAIGV---------ARGIQFLHTG-----IVPGVFSN  157 (206)
Q Consensus       111 ~~~L~~~--------------~~---~~~~-~~~~~~~-~~~~~~~~i---------~~~l~~lH~~-----~~~~i~h~  157 (206)
                      |..+...              +.   ..+. ..+.+.. ....+..++         ...+..+-..     ....++|+
T Consensus        72 G~~~~~~~~~~~~~~~~la~~l~~lH~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~H~  151 (256)
T TIGR02721        72 GEVITLDQFVALDLLLELAALLHQLHSQPRFGYPLSLKARIAHYWLQIDPARRTPEWLRLYKQFRSAPEPAPLPLAPLHM  151 (256)
T ss_pred             CcccccccccCchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhcccccCChHHHHHHHHHHhccCCCCCCCeeecC
Confidence            8654321              11   1110 0111211 111111111         1111111111     11358999


Q ss_pred             CCccccEEecCCCceeEccCCccccccc
Q 028629          158 NLKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       158 dl~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                      |+.|.||++++++ +.++||+.+...++
T Consensus       152 Dl~~~Nil~~~~~-~~lIDwE~a~~gdp  178 (256)
T TIGR02721       152 DVHAYNLVVTPQG-LKLIDWEYASDGDI  178 (256)
T ss_pred             CCCcCcEEEeCCC-CEEEeccccCcCCH
Confidence            9999999999876 78999999876543

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=98.09  E-value=6.7e-05  Score=56.64  Aligned_cols=34  Identities=12%  Similarity=0.271  Sum_probs=28.1

Q ss_pred             CceeccCCccccEEecCCCceeEccCCccccccc
Q 028629          152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       152 ~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                      ..++|+|+.+.|++++++...-|+||+.+...+.
T Consensus       164 ~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~~gDp  197 (235)
T cd05155         164 PVWFHGDLAPGNLLVQDGRLSAVIDFGCLGVGDP  197 (235)
T ss_pred             ceEEeCCCCCCcEEEECCCEEEEEeCcccCcCCh
Confidence            4589999999999998766567999999876543

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=98.06  E-value=3.7e-05  Score=60.02  Aligned_cols=149  Identities=11%  Similarity=0.150  Sum_probs=82.0

Q ss_pred             cceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCc--eeeeccccccccccCCCCceEEEEE
Q 028629           29 SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH--LVSALGHCFECYFDDSSVSRIFLIF  106 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~--i~~~~~~~~~~~~~~~~~~~~~lv~  106 (206)
                      .+.+..|....+|+.... +..+++|....   .....+..|+.++..+.+.+  +.+++.......+. ...+..++++
T Consensus        19 i~~i~~G~~n~~y~v~~~-~~~~vLr~~~~---~~~~~~~~e~~~l~~L~~~g~~vp~~i~~~~g~~~~-~~~~~~~~l~   93 (296)
T cd05153          19 FEGISAGIENTNYFVTTD-SGRYVLTLFEK---VSAEELPFFLALLDHLAERGLPVPRPIADRDGEYLS-ELAGKPAALV   93 (296)
T ss_pred             eecccCccccceEEEEeC-CCcEEEEEcCC---CChHhccHHHHHHHHHHHCCCCCCccccCCCCcEee-eeCCceEEEE
Confidence            455667777889988754 45788887753   23455667888888885433  33333321110000 1134578999


Q ss_pred             eecCCCCHHH-----------HHh---c----CCCC----cccCHHHHH----------HHHHHHHHHHHHHhc----CC
Q 028629          107 EYVPNGTLRS-----------WIS---E----GHAW----QSLTWTQRI----------SAAIGVARGIQFLHT----GI  150 (206)
Q Consensus       107 e~~~~~~L~~-----------~~~---~----~~~~----~~~~~~~~~----------~~~~~i~~~l~~lH~----~~  150 (206)
                      ++++|..+..           .+.   .    ....    ....|....          .....+..++.++..    ..
T Consensus        94 ~~i~G~~~~~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~  173 (296)
T cd05153          94 EFLAGEHLTRPTAAHCRQIGEALARLHLAAQSFPGERNNLRGLAWIRELGKDLLPLLSAEDRALLADELARQDAFDPSDL  173 (296)
T ss_pred             EeCCCCCCCCCCHHHHHHHHHHHHHHHHHhccCCccCCCcCCcHHHHHHHHHhccccCHHHHHHHHHHHHHHHhhhhhcC
Confidence            9998865421           010   0    0000    000111100          001112223333332    12


Q ss_pred             CCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          151 VPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       151 ~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      ..+++|+|+.|.|+++++++.+.|.||+.+..
T Consensus       174 ~~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~~  205 (296)
T cd05153         174 PRGVIHADLFRDNVLFDGDELSGVIDFYFACT  205 (296)
T ss_pred             CCcCCccCcCcccEEEeCCceEEEeehhhhcC
Confidence            24799999999999999887778999998864

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=98.06  E-value=0.00017  Score=52.97  Aligned_cols=135  Identities=16%  Similarity=0.234  Sum_probs=86.1

Q ss_pred             ccceeccCcceeEEEEEEeCCcEEEEEEeecCC----------------CccHHHHHHHHHHHhccC------CCceeee
Q 028629           28 TSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK----------------SHSTRNFMHHIELISKLR------HCHLVSA   85 (206)
Q Consensus        28 ~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~----------------~~~~~~~~~e~~~l~~l~------h~~i~~~   85 (206)
                      ....||+|+.-.||.  +++....+||+.....                ....++..+|+.....+.      +.+|.++
T Consensus         5 ~~~~i~~G~~R~cy~--HP~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r~   82 (199)
T PF10707_consen    5 ESDLIAQGGERDCYQ--HPDDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPRF   82 (199)
T ss_pred             CCcccccCCCceEEE--CCCCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccccE
Confidence            345688999876664  3345567788886554                122345566665555554      8889999


Q ss_pred             ccccccccccCCCCceEEEEEeecCC------CCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCC
Q 028629           86 LGHCFECYFDDSSVSRIFLIFEYVPN------GTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNL  159 (206)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~lv~e~~~~------~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl  159 (206)
                      +|+..+       ..-+-+++|.+.+      .+|.+++...    .++. .....   +-.-..+|-+   ..|+.+|+
T Consensus        83 ~G~veT-------~~G~Glv~e~I~d~dG~~s~TL~~~l~~~----~~~~-~~~~~---L~~f~~~l~~---~~Iv~~dl  144 (199)
T PF10707_consen   83 YGFVET-------NLGLGLVVELIRDADGNISPTLEDYLKEG----GLTE-ELRQA---LDEFKRYLLD---HHIVIRDL  144 (199)
T ss_pred             eEEEec-------CCceEEEEEEEECCCCCcCccHHHHHHcC----CccH-HHHHH---HHHHHHHHHH---cCCeecCC
Confidence            998865       4456788887632      3678877553    3554 33333   3334466666   69999999


Q ss_pred             ccccEEecCC--C--ceeEcc-CCcccc
Q 028629          160 KITDILLDQN--L--VAKISS-YNLPLL  182 (206)
Q Consensus       160 ~p~nil~~~~--~--~~kl~d-f~~a~~  182 (206)
                      +|.||++..+  +  .+.|+| ||....
T Consensus       145 ~~~NIv~~~~~~~~~~lvlIDG~G~~~~  172 (199)
T PF10707_consen  145 NPHNIVVQRRDSGEFRLVLIDGLGEKEL  172 (199)
T ss_pred             CcccEEEEecCCCceEEEEEeCCCCccc
Confidence            9999999843  2  455555 354443

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PRK05231 homoserine kinase; Provisional

Probab=97.97  E-value=0.00036  Score=55.13  Aligned_cols=165  Identities=12%  Similarity=0.196  Sum_probs=84.4

Q ss_pred             eeCHHHHHHHhcCCcc-----cceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCc--eeee
Q 028629           13 TFSLEELEEATNNFDT-----SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH--LVSA   85 (206)
Q Consensus        13 ~~~~~~~~~~~~~~~~-----~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~--i~~~   85 (206)
                      .++..++......|..     .+.+..|....+|.....+| .+++|+.. .  .....+..|..++..+...+  +.++
T Consensus         6 ~ls~~~l~~~l~~y~~~~~~~~~~l~~G~~n~~y~v~t~~g-~~vLK~~~-~--~~~~~l~~~~~~l~~L~~~glpvP~~   81 (319)
T PRK05231          6 DVSDDELAAFLAPYDLGELLSLKGIAEGIENSNFFLTTTQG-EYVLTLFE-R--LTAEDLPFFLGLMQHLAARGVPVPAP   81 (319)
T ss_pred             cCCHHHHHHHHHhcCCchhhccchhccccccceEEEEeCCC-cEEEEEec-c--CChHHhHHHHHHHHHHHHCCCCCCcc
Confidence            4555666666666755     34455666678898876544 68888765 2  22344445666666664222  2232


Q ss_pred             ccccccccccCCCCceEEEEEeecCCCCHH-----------HHHhc---C-CC-------CcccCH-HHHHH--------
Q 028629           86 LGHCFECYFDDSSVSRIFLIFEYVPNGTLR-----------SWISE---G-HA-------WQSLTW-TQRIS--------  134 (206)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~-----------~~~~~---~-~~-------~~~~~~-~~~~~--------  134 (206)
                      ........+. ...+..++++++++|..+.           +.+..   . ..       ...+.+ .....        
T Consensus        82 i~~~~G~~~~-~~~g~~~~l~~~l~G~~~~~~~~~~~~~~G~~LA~lH~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (319)
T PRK05231         82 VARRDGAALG-ELAGKPAAIVTFLEGKWPRAPTAAHCAEVGEMLARMHLAGRDFPLERPNLRGLAWWRELAPRLLPFLAD  160 (319)
T ss_pred             eeCCCCCEee-eeCCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCccCCCCCChHHHHHHHHHHhhccCh
Confidence            2110000000 1134678999999886321           11110   0 00       000111 11111        


Q ss_pred             ----HHHH-HHHHHHHHhc----CCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          135 ----AAIG-VARGIQFLHT----GIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       135 ----~~~~-i~~~l~~lH~----~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                          ...+ +...+..+..    ....+++|+|+.|.||+++.+...-|+||+.+..
T Consensus       161 ~~~~~l~~~~~~~~~~~~~~~~~~lp~~liHgD~~~~Nil~~~~~~~~iIDf~~~~~  217 (319)
T PRK05231        161 EQAALLEAELAAQLAFLASAAWPALPRGVIHADLFRDNVLFEGDRLSGFIDFYFACN  217 (319)
T ss_pred             hHHHHHHHHHHHHHHhhhccccccCCcccCCCCCCCCcEEEECCceEEEEecccccC
Confidence                0111 1111222221    0225899999999999999665568999999853

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=97.97  E-value=7.5e-05  Score=59.39  Aligned_cols=137  Identities=12%  Similarity=0.108  Sum_probs=92.7

Q ss_pred             eeccCcceeEEEEEEeCCcEEEEEEeecCCCcc--------------------------HHHHHHHHHHHhccCCCceee
Q 028629           31 FMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHS--------------------------TRNFMHHIELISKLRHCHLVS   84 (206)
Q Consensus        31 ~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~--------------------------~~~~~~e~~~l~~l~h~~i~~   84 (206)
                      .|..|.-+.||.+...+|..+|||+++..-...                          .-....|++.|.++....|.-
T Consensus       151 CiSTGKEANVYHat~~dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RNLkRl~~aGIP~  230 (520)
T KOG2270|consen  151 CISTGKEANVYHATEEDGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRNLKRLNNAGIPC  230 (520)
T ss_pred             ccccCccceeEeeecCCCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            356777789999998789999999987532100                          112356888888887666543


Q ss_pred             eccccccccccCCCCceEEEEEeecCCCC-HHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCcccc
Q 028629           85 ALGHCFECYFDDSSVSRIFLIFEYVPNGT-LRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITD  163 (206)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~lv~e~~~~~~-L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~n  163 (206)
                      .--..+         ....|||+++.... ..-.+..    -.++......+-.+++.-|.-|.+.  .+++|.||+--|
T Consensus       231 PePIlL---------k~hVLVM~FlGrdgw~aPkLKd----~~ls~~ka~~~Y~~~v~~MR~lY~~--c~LVHADLSEfN  295 (520)
T KOG2270|consen  231 PEPILL---------KNHVLVMEFLGRDGWAAPKLKD----ASLSTSKARELYQQCVRIMRRLYQK--CRLVHADLSEFN  295 (520)
T ss_pred             CCceee---------ecceEeeeeccCCCCcCccccc----ccCChHHHHHHHHHHHHHHHHHHHH--hceeccchhhhh
Confidence            322222         24678999995311 1112222    3466666677777787777777765  799999999999


Q ss_pred             EEecCCCceeEccCCccccc
Q 028629          164 ILLDQNLVAKISSYNLPLLA  183 (206)
Q Consensus       164 il~~~~~~~kl~df~~a~~~  183 (206)
                      +|+. +|.+.|+|.+-+.-.
T Consensus       296 ~Lyh-dG~lyiIDVSQSVE~  314 (520)
T KOG2270|consen  296 LLYH-DGKLYIIDVSQSVEH  314 (520)
T ss_pred             heEE-CCEEEEEEccccccC
Confidence            9997 568889999887543

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=97.94  E-value=1.3e-05  Score=62.67  Aligned_cols=146  Identities=12%  Similarity=0.138  Sum_probs=98.1

Q ss_pred             ceeCHHHHHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCC-----------------cc-----HHHHHH
Q 028629           12 RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS-----------------HS-----TRNFMH   69 (206)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~-----------------~~-----~~~~~~   69 (206)
                      ..+.+..+.....-+..++.||-|.-+.||.+-...|.+.++|.=.....                 ..     .-...+
T Consensus        80 DyLAlktL~~R~~v~svGnqIGVGKESDIY~v~d~~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~k  159 (465)
T KOG2268|consen   80 DYLALKTLSNRGSVESVGNQIGVGKESDIYVVADEEGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATK  159 (465)
T ss_pred             hHHHHHHHHhcchhhhhccccccccccceEEEecCCCCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHH
Confidence            34444444444456788999999999999999988899988884322110                 00     112456


Q ss_pred             HHHHHhccCC--CceeeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHh
Q 028629           70 HIELISKLRH--CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLH  147 (206)
Q Consensus        70 e~~~l~~l~h--~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH  147 (206)
                      |...|+.+..  -.+++.++           .+..++|||++.+..|.+.-..      .+..++..   .+..-+.-|-
T Consensus       160 EfafmkaL~e~gfpVPkpiD-----------~~RH~Vvmelv~g~Pl~~v~~v------~d~~~ly~---~lm~~Iv~la  219 (465)
T KOG2268|consen  160 EFAFMKALYERGFPVPKPID-----------HNRHCVVMELVDGYPLRQVRHV------EDPPTLYD---DLMGLIVRLA  219 (465)
T ss_pred             HHHHHHHHHHcCCCCCCccc-----------ccceeeHHHhhcccceeeeeec------CChHHHHH---HHHHHHHHHH
Confidence            8888888843  33444444           3467999999998887765433      23333333   2333344455


Q ss_pred             cCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          148 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       148 ~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      +   .|++|+|+.-=||++++++.+.++||--.
T Consensus       220 ~---~GlIHgDFNEFNimv~dd~~i~vIDFPQm  249 (465)
T KOG2268|consen  220 N---HGLIHGDFNEFNIMVKDDDKIVVIDFPQM  249 (465)
T ss_pred             H---cCceecccchheeEEecCCCEEEeechHh
Confidence            5   69999999999999999999999999544

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=97.87  E-value=0.00011  Score=57.62  Aligned_cols=34  Identities=15%  Similarity=0.081  Sum_probs=29.5

Q ss_pred             CceeccCCccccEEecCC----CceeEccCCccccccc
Q 028629          152 PGVFSNNLKITDILLDQN----LVAKISSYNLPLLAEN  185 (206)
Q Consensus       152 ~~i~h~dl~p~nil~~~~----~~~kl~df~~a~~~~~  185 (206)
                      ..++|+|+.|.||+++++    +.+.++||+.|....+
T Consensus       179 ~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~~~p  216 (302)
T cd05156         179 VVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASYNYR  216 (302)
T ss_pred             ceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCCCCc
Confidence            578999999999999974    8899999999976544

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=97.82  E-value=0.0016  Score=51.14  Aligned_cols=163  Identities=12%  Similarity=0.181  Sum_probs=85.7

Q ss_pred             CHHHHHHHhcCCcc-----cceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCc--eeeecc
Q 028629           15 SLEELEEATNNFDT-----SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH--LVSALG   87 (206)
Q Consensus        15 ~~~~~~~~~~~~~~-----~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~--i~~~~~   87 (206)
                      +.+++.....+|..     .+.++.|....+|+....++ .+++|......  ....+..|.+++..+....  +.++..
T Consensus         8 ~~~~l~~~l~~y~~~~~~~i~~~~~G~~n~~y~v~t~~~-~~vLK~~~~~~--~~~~i~~e~~~l~~L~~~g~pvp~~i~   84 (307)
T TIGR00938         8 SDEEMSSFLDGYDLGELLSLKGIAEGVENSNYLLTTDVG-RYILTLYEKRV--KAEELPFFLALTTHLAARGLPVPKPVK   84 (307)
T ss_pred             CHHHHHHHHHhcCCCCceeccccCCccccceEEEEeCCC-cEEEEEecCCC--CHHHHHHHHHHHHHHHHCCCCCCcccc
Confidence            33444444445543     44566676678998775434 67788765322  2334556777777774333  333333


Q ss_pred             ccccccccCCCCceEEEEEeecCCCCHH-----------HHHh---cC-CCC-c-------ccCHHHHHH----------
Q 028629           88 HCFECYFDDSSVSRIFLIFEYVPNGTLR-----------SWIS---EG-HAW-Q-------SLTWTQRIS----------  134 (206)
Q Consensus        88 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~-----------~~~~---~~-~~~-~-------~~~~~~~~~----------  134 (206)
                      ........ ...+..+++++|++|..+.           ..+.   .. ... .       ...|.....          
T Consensus        85 t~~g~~~~-~~~g~~~~l~e~i~G~~~~~~~~~~~~~~G~~LA~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~l~  163 (307)
T TIGR00938        85 SRDGRQLS-TLAGKPACLVEFLQGLSVGRPTAMHCRPVGEVLAWMHLAGAHFPENRKNSLRLEAWHILAEKCFEAAPQLE  163 (307)
T ss_pred             CCCCCeeh-hcCCeEEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCCCChHHHHHHHHhhhhcccccC
Confidence            21110000 1134678999999885431           1111   00 000 0       001111000          


Q ss_pred             --HHHHHHHHHHHHhc----CCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          135 --AAIGVARGIQFLHT----GIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       135 --~~~~i~~~l~~lH~----~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                        ....+...+.++..    ....+++|+|+.+.|+++++++.+.|+||+.+.
T Consensus       164 ~~~~~~l~~~~~~l~~~~~~~~~~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~  216 (307)
T TIGR00938       164 AHMGAELDKELDYLDKFWPRDLPRGVIHADLFPDNVLFDGDSVKGVIDFYFAC  216 (307)
T ss_pred             HHHHHHHHHHHHHHHhhhhhcCCCccCCCCCCcCcEEEECCceEEEeeccccc
Confidence              01112233444432    123689999999999999988777899999984

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>PRK10593 hypothetical protein; Provisional

Probab=97.82  E-value=0.00069  Score=53.08  Aligned_cols=83  Identities=10%  Similarity=0.031  Sum_probs=55.6

Q ss_pred             CCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCC---CceeeeccccccccccCCCCce
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRH---CHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      .-...+.|+.|..+.||.....++ .+.+|..+.  ......+..|.+.++.+..   ..+.++++++..    +...+.
T Consensus        15 ~~~~~~~i~~G~~~~vy~~~~~~~-~~~~k~~~~--~~~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~----~~~~g~   87 (297)
T PRK10593         15 KLSRVECISEQPYAALWALYDSQG-NPMPLMARS--FSTPGVAQQEAWKLSMLARSGTVRMPTVYGVMTH----EQSPGP   87 (297)
T ss_pred             hhheeeecCCccceeEEEEEcCCC-CEEEEEecc--cccchHHHHHHHHHHHHccCCCCCcCcEEEEecc----CCcCCC
Confidence            344566799999999999876545 466676432  1123577889999988853   356777765532    112355


Q ss_pred             EEEEEeecCCCCH
Q 028629          102 IFLIFEYVPNGTL  114 (206)
Q Consensus       102 ~~lv~e~~~~~~L  114 (206)
                      .+++||++++.++
T Consensus        88 ~~LVmE~i~G~~~  100 (297)
T PRK10593         88 DVLLLERLRGVSV  100 (297)
T ss_pred             eEEEEeccCCEec
Confidence            8999999988654

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=97.77  E-value=0.0015  Score=53.09  Aligned_cols=75  Identities=8%  Similarity=0.013  Sum_probs=51.1

Q ss_pred             cceeccCcceeEEEEEEeCC-cEEEEEEeecC------C-CccHHHHHHHHHHHhccC---CCceeeeccccccccccCC
Q 028629           29 SAFMGEGSKGQMYRGRLKNG-TFIAIRCLKMK------K-SHSTRNFMHHIELISKLR---HCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~~~-~~vaiK~~~~~------~-~~~~~~~~~e~~~l~~l~---h~~i~~~~~~~~~~~~~~~   97 (206)
                      .+.+|.|.++.||++...+| +.+++|.-...      . +...++...|.+.|..+.   -..+++++.+.        
T Consensus        31 ~~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~D--------  102 (401)
T PRK09550         31 AREIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHYD--------  102 (401)
T ss_pred             eeEcCCCceEEEEEEEeCCCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEEC--------
Confidence            45789999999999998765 48999975311      1 223456667788777762   23466666553        


Q ss_pred             CCceEEEEEeecCCC
Q 028629           98 SVSRIFLIFEYVPNG  112 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~  112 (206)
                       ....+++||++++.
T Consensus       103 -~~~~~lVME~L~~~  116 (401)
T PRK09550        103 -EELAVTVMEDLSDH  116 (401)
T ss_pred             -CCCCEEEEecCCCc
Confidence             33578999998763

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=97.71  E-value=0.0008  Score=49.36  Aligned_cols=132  Identities=18%  Similarity=0.399  Sum_probs=87.2

Q ss_pred             cCCcccceeccCcc-eeEEEEEEeCCcEEEEEEeec---CCC------------------ccHHHHHHHHHHHhccC---
Q 028629           24 NNFDTSAFMGEGSK-GQMYRGRLKNGTFIAIRCLKM---KKS------------------HSTRNFMHHIELISKLR---   78 (206)
Q Consensus        24 ~~~~~~~~lg~g~~-g~v~~~~~~~~~~vaiK~~~~---~~~------------------~~~~~~~~e~~~l~~l~---   78 (206)
                      .+++..+.||.|.. |.||++... |..||+|....   ...                  .....|.+|-+...+++   
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I~-g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~~  115 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEID-GRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEAG  115 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEEC-CeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhcc
Confidence            67899999999999 999999995 88999999321   100                  11235777888777775   


Q ss_pred             CCce--eeeccccccc---cc--------cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHH
Q 028629           79 HCHL--VSALGHCFEC---YF--------DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQF  145 (206)
Q Consensus        79 h~~i--~~~~~~~~~~---~~--------~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  145 (206)
                      +.++  ++.+|+..-.   ..        .........||.||++...            .+....    +.++..-+..
T Consensus       116 ~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~------------~~~~~~----~~~~~~dl~~  179 (207)
T PF13095_consen  116 REGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP------------PLQIRD----IPQMLRDLKI  179 (207)
T ss_pred             ccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc------------ccchhH----HHHHHHHHHH
Confidence            3344  7888876321   00        0111223456667665422            122222    4566677888


Q ss_pred             HhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          146 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       146 lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      +|.   .+|+-+|+++.|..   +  -+|+|||.+
T Consensus       180 ~~k---~gI~~~Dv~~~ny~---~--G~lvDfs~~  206 (207)
T PF13095_consen  180 LHK---LGIVPRDVKPRNYR---G--GKLVDFSSS  206 (207)
T ss_pred             HHH---CCeeeccCcccccc---C--CEEEecccC
Confidence            999   89999999999986   2  357898864

>PLN02236 choline kinase

Probab=97.59  E-value=0.0011  Score=53.16  Aligned_cols=145  Identities=13%  Similarity=0.110  Sum_probs=81.2

Q ss_pred             cceeccCcceeEEEEEEeC-----CcEEEEEEeecCCCccHHHHHHHHHHHhccCCCcee-eeccccccccccCCCCceE
Q 028629           29 SAFMGEGSKGQMYRGRLKN-----GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV-SALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~~-----~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~-~~~~~~~~~~~~~~~~~~~  102 (206)
                      .+.+..|-...+|++...+     +..|++|.......... +..+|..+++.+...++. ++++.+.        .+  
T Consensus        41 i~~l~gGlTN~~y~v~~~~~~~~~~~~~v~Ri~g~~t~~~i-dR~~E~~~~~~l~~~gl~P~~~~~~~--------~g--  109 (344)
T PLN02236         41 VIPLKGAMTNEVFQIKWPTKEGNLGRKVLVRIYGEGVELFF-DRDDEIRTFECMSRHGQGPRLLGRFP--------NG--  109 (344)
T ss_pred             EEEcCCcccceeEEEEeCCCCCCCCCeEEEEEccCCCCeee-chHHHHHHHHHHHHcCCCCceEEEEC--------Cc--
Confidence            4455567778999987532     36788997764443322 236788888888655543 3333331        11  


Q ss_pred             EEEEeecCCCCHHHH-------H-------h---cCC--C-CcccCHHHHHHHHHHH-----------------HHHHHH
Q 028629          103 FLIFEYVPNGTLRSW-------I-------S---EGH--A-WQSLTWTQRISAAIGV-----------------ARGIQF  145 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~-------~-------~---~~~--~-~~~~~~~~~~~~~~~i-----------------~~~l~~  145 (206)
                       .+.+|+++.++...       .       .   ...  . .....+..+..+..++                 ...+..
T Consensus       110 -~v~efi~g~~l~~~~l~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~  188 (344)
T PLN02236        110 -RVEEFIHARTLSAADLRDPEISALIAAKLREFHSLDMPGPKNVLLWDRLRNWLKEAKNLCSPEEAKEFRLDSLEDEINL  188 (344)
T ss_pred             -eEEEeeCCCCCCHHHcCChHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhhcCcchhhhcCHHHHHHHHHH
Confidence             47888877555321       0       0   100  0 0011122222332111                 111111


Q ss_pred             H----hc-CCCCceeccCCccccEEecC-CCceeEccCCccccccc
Q 028629          146 L----HT-GIVPGVFSNNLKITDILLDQ-NLVAKISSYNLPLLAEN  185 (206)
Q Consensus       146 l----H~-~~~~~i~h~dl~p~nil~~~-~~~~kl~df~~a~~~~~  185 (206)
                      |    .. .....++|+|+++.||++++ ++.+.++||+.+.....
T Consensus       189 L~~~~~~~~~~~~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~~~~~  234 (344)
T PLN02236        189 LEKELSGDDQEIGFCHNDLQYGNIMIDEETRAITIIDYEYASYNPV  234 (344)
T ss_pred             HHHHhcccCCCceEEeCCCCcCcEEEeCCCCcEEEEeehhccccch
Confidence            1    11 11246899999999999986 47899999999976543

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=97.49  E-value=8.1e-05  Score=62.97  Aligned_cols=66  Identities=21%  Similarity=0.281  Sum_probs=52.7

Q ss_pred             HHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccccc----------ccccccccCccccCCCCCC
Q 028629          138 GVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENA----------EKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       138 ~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~----------~~~~~~~~~~~y~aPE~~~  205 (206)
                      +++.|+.++|+.  .+++|++|.|++|.++.++..||+.|+.+....++          ..+....+...|.|||+..
T Consensus       107 ~v~dgl~flh~s--Ak~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~  182 (700)
T KOG2137|consen  107 NVADGLAFLHRS--AKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLL  182 (700)
T ss_pred             cccchhhhhccC--cceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhc
Confidence            345999999997  89999999999999999999999999998755441          2333345566799999863

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=97.42  E-value=3.6e-05  Score=67.91  Aligned_cols=144  Identities=13%  Similarity=0.155  Sum_probs=92.8

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC---ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ..+.+.+-+..+.++.++.+.-. .|...+.++......   ...+....+-.++-...+|.++....-       ....
T Consensus       804 d~~~i~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s-------~~~r  876 (1205)
T KOG0606|consen  804 DGFEITKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPS-------FPCR  876 (1205)
T ss_pred             ccceecccccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCccccCCCCceecccCC-------CCCC
Confidence            44555666778888888877754 454445554432211   111111222222222233444432222       1235


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ..+.|+++++.+++|...+..-.   +.+.+-...+...+.++..+||.   ..+.|+|++|.|.++..++..++.+|+.
T Consensus       877 sP~~L~~~~~~~~~~~Skl~~~~---~~saepaRs~i~~~vqs~e~L~s---~~r~h~~~~p~~~l~~~~gh~~l~~~~t  950 (1205)
T KOG0606|consen  877 SPLPLVGHYLNGGDLPSKLHNSG---CLSAEPARSPILERVQSLESLHS---SLRKHRDLKPDSLLIAYDGHRPLTDFGT  950 (1205)
T ss_pred             CCcchhhHHhccCCchhhhhcCC---CcccccccchhHHHHhhhhcccc---chhhcccccccchhhcccCCcccCcccc
Confidence            67899999999999998887653   35555555566678899999999   5699999999999999999999999984


Q ss_pred             c
Q 028629          180 P  180 (206)
Q Consensus       180 a  180 (206)
                      .
T Consensus       951 ~  951 (1205)
T KOG0606|consen  951 L  951 (1205)
T ss_pred             c
Confidence            3

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=97.33  E-value=0.0028  Score=49.17  Aligned_cols=35  Identities=14%  Similarity=0.250  Sum_probs=28.5

Q ss_pred             CceeccCCccccEEecCCCc-eeEccCCcccccccc
Q 028629          152 PGVFSNNLKITDILLDQNLV-AKISSYNLPLLAENA  186 (206)
Q Consensus       152 ~~i~h~dl~p~nil~~~~~~-~kl~df~~a~~~~~~  186 (206)
                      ..++|+|++|.||+++++++ .-|.||+.+.+.++.
T Consensus       185 ~~lvHGD~~~~Nilv~~~~~~~gviDWe~a~iGDPa  220 (276)
T cd05152         185 TVLVHGDLHPGHILIDEDARVTGLIDWTEAKVGDPA  220 (276)
T ss_pred             CeeEeCCCCCCcEEEeCCCCEEEEECcHhcccCCHH
Confidence            45899999999999997555 469999999876543

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=97.31  E-value=6.8e-05  Score=63.20  Aligned_cols=154  Identities=13%  Similarity=0.085  Sum_probs=98.5

Q ss_pred             ccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCc-eeeeccccccccccCCCCceEEEEE
Q 028629           28 TSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH-LVSALGHCFECYFDDSSVSRIFLIF  106 (206)
Q Consensus        28 ~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~~~~~~~~lv~  106 (206)
                      ....+++++++.+++.+....+....+.+...     ....-++++|.+++||| .+..++-       +..+...++.+
T Consensus       246 ~fh~fvK~altknpKkRptaeklL~h~fvs~~-----l~~rl~~eLLdK~n~P~~~v~~~~d-------~~~E~~~~i~~  313 (829)
T KOG0576|consen  246 FFHNFVKGALTKNPKKRPTAEKLLQHPFVSQT-----LSRRLAIELLDKVNNPNPVVRYLED-------YDGEDYLWIPM  313 (829)
T ss_pred             HHHHHHHHHhcCCCccCCChhhheeceeeccc-----hhhHHHHHHHHHccCCCCccccccc-------CCcccccchhh
Confidence            33446678888888877532233335555422     33455899999999999 3333222       23467889999


Q ss_pred             eecCCC-CHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccc
Q 028629          107 EYVPNG-TLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       107 e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                      ++++++ +........+  -.+..-....+.+.-..+++++|+   -.=+|+|    ||+.++ +..+..+|+....++.
T Consensus       314 ~i~s~~rs~~~~~~~se--~~~~~~~~~~~~r~et~~l~~l~~---~~~~~~d----~~l~s~-~~~~~~~~~v~~~L~~  383 (829)
T KOG0576|consen  314 RICSTGRSSALEMTVSE--IALEQYQFAYPLRKETRPLAELHS---SYKVHRD----NILGSE-EEVKLLDFAVPPQLTR  383 (829)
T ss_pred             hhhcCCccccccCChhh--Hhhhhhhhhhhhhhhccccccccc---ccccCcc----cccccc-cccccccccCCcccCc
Confidence            999776 2221111100  122233333445555677889998   3457887    776665 6778999999988887


Q ss_pred             cccccccccCccccCCCC
Q 028629          186 AEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       186 ~~~~~~~~~~~~y~aPE~  203 (206)
                      ..+.+...++...+|||.
T Consensus       384 ~~~~~t~~~~~~~~~pev  401 (829)
T KOG0576|consen  384 TMKPRTAIGTPEPLAPEV  401 (829)
T ss_pred             ccccccCCCCCCCCCchh
Confidence            777788899999999983

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=97.28  E-value=0.0037  Score=49.77  Aligned_cols=33  Identities=9%  Similarity=0.075  Sum_probs=28.0

Q ss_pred             ceeccCCccccEEecC-CCceeEccCCccccccc
Q 028629          153 GVFSNNLKITDILLDQ-NLVAKISSYNLPLLAEN  185 (206)
Q Consensus       153 ~i~h~dl~p~nil~~~-~~~~kl~df~~a~~~~~  185 (206)
                      -++|+|+.+.||++++ ++.++++||+.|....+
T Consensus       183 v~CHnDl~~~NiL~~~~~~~l~lID~EYag~nd~  216 (330)
T PLN02421        183 VFAHNDLLSGNLMLNEDEGKLYFIDFEYGSYSYR  216 (330)
T ss_pred             EEEECCCCcccEEEeCCCCcEEEEcccccCCCcc
Confidence            4799999999999985 57899999999976544

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=97.19  E-value=0.0083  Score=47.31  Aligned_cols=39  Identities=13%  Similarity=0.340  Sum_probs=33.4

Q ss_pred             CceeccCCccccEEecCCCceeEccCCcccccccccccc
Q 028629          152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVG  190 (206)
Q Consensus       152 ~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~~~~  190 (206)
                      ..++|||+++.|++++++..+-|.||+++.+.++.....
T Consensus       198 ~~lvHGD~~~gNlii~~~~~~gVlDwe~~~lGDP~~Dl~  236 (321)
T COG3173         198 PVLVHGDYRPGNLIIDPGRPTGVLDWELATLGDPLEDLA  236 (321)
T ss_pred             ceeeeCCcccCCEEEeCCCeeEEEeccccccCCcHHHHH
Confidence            469999999999999988889999999999877655443

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=97.16  E-value=0.0092  Score=47.84  Aligned_cols=72  Identities=6%  Similarity=-0.023  Sum_probs=46.2

Q ss_pred             eeccCcceeEEEEEEeCC-cEEEEEEeec-------CCCccHHHHHHHHHHHhccC--CC-ceeeeccccccccccCCCC
Q 028629           31 FMGEGSKGQMYRGRLKNG-TFIAIRCLKM-------KKSHSTRNFMHHIELISKLR--HC-HLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        31 ~lg~g~~g~v~~~~~~~~-~~vaiK~~~~-------~~~~~~~~~~~e~~~l~~l~--h~-~i~~~~~~~~~~~~~~~~~   99 (206)
                      .+|.|....||++..++| +.++||.-..       +-+....+..-|.+.|+...  -| .+++++.+-         .
T Consensus         2 EigdGnlN~VfrV~~~~g~~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~~P~~vP~vy~~D---------~   72 (370)
T TIGR01767         2 EVGDGNLNLVFHVYDQEGDRAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQGEHVPHLVPRIFHFD---------T   72 (370)
T ss_pred             cCCCCceEEEEEEEcCCCCeeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhccCccccCeEEEEc---------c
Confidence            578999999999997643 6799987531       11333455566777776653  23 345555443         3


Q ss_pred             ceEEEEEeecCC
Q 028629          100 SRIFLIFEYVPN  111 (206)
Q Consensus       100 ~~~~lv~e~~~~  111 (206)
                      ....++||+++.
T Consensus        73 e~~~~vMEdL~~   84 (370)
T TIGR01767        73 EMAVTVMEDLSH   84 (370)
T ss_pred             ccceehHhhCcc
Confidence            456689998854

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>PRK11768 serine/threonine protein kinase; Provisional

Probab=97.08  E-value=0.024  Score=45.01  Aligned_cols=100  Identities=11%  Similarity=0.170  Sum_probs=55.4

Q ss_pred             cceeCHHHHHHHhcCCccc---c-eeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCce--ee
Q 028629           11 YRTFSLEELEEATNNFDTS---A-FMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHL--VS   84 (206)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~---~-~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i--~~   84 (206)
                      ...++...+..+...+...   + ..-.+.-..||.....++..+++|+.... ......+..|++.+..+....+  +.
T Consensus         8 ~~~l~p~~~~~a~~~~g~~~~~~~~~l~s~eN~vy~v~~~~~~~~vlKv~r~~-~~~~~~i~~E~~~l~~L~~~gipv~~   86 (325)
T PRK11768          8 FQTLTPDLILDALESLGLRVDGRLLALNSYENRVYQFGDEDGRRVVAKFYRPE-RWSDAQILEEHAFALELAEAEIPVVA   86 (325)
T ss_pred             CCCCChHHHHHHHHHcCCCCccceEeeccccceEEEEecCCCCEEEEEEcCcc-cCCHHHHHHHHHHHHHHHHCCCCCCC
Confidence            4556666666666655332   1 11134446789888767788999987533 2345667778888877743222  22


Q ss_pred             eccccccccccCCCCceEEEEEeecCCCC
Q 028629           85 ALGHCFECYFDDSSVSRIFLIFEYVPNGT  113 (206)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~lv~e~~~~~~  113 (206)
                      ...  .+...-...++..+.++++++|..
T Consensus        87 p~~--~~G~~~~~~~g~~~~l~~~~~G~~  113 (325)
T PRK11768         87 PLA--FNGQTLHEHQGFRFALFPRRGGRA  113 (325)
T ss_pred             Ccc--CCCCEEEEECCEEEEEEeeeCCCC
Confidence            111  110000011346788999987753

>PLN02756 S-methyl-5-thioribose kinase

Probab=96.93  E-value=0.024  Score=46.28  Aligned_cols=74  Identities=8%  Similarity=0.009  Sum_probs=48.2

Q ss_pred             ccceeccCcceeEEEEEEeCCcEEEEEEeecCC-------CccHHHHHHHHHHHhccC---CCceeeeccccccccccCC
Q 028629           28 TSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK-------SHSTRNFMHHIELISKLR---HCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        28 ~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~-------~~~~~~~~~e~~~l~~l~---h~~i~~~~~~~~~~~~~~~   97 (206)
                      ..+.+|.|....||+.... +..+++|+-....       +....+-..|.+.|+.+.   ...+++++.++.       
T Consensus        36 ~~~eiggGn~N~VyrV~~~-~~svVVKqa~p~~r~vga~wpl~~~R~~~Ea~aL~~~~~~~p~~VPkVy~~de-------  107 (418)
T PLN02756         36 KIKEVGDGNLNFVYIVVSS-SGSFVIKQALPYIRCIGESWPMTKERAYFEATALREHGRLCPDHVPEVYHFDR-------  107 (418)
T ss_pred             eEEEcCCCceeeEEEEEcC-CccEEEEeCCccccCCCccccCCccHHHHHHHHHHHhhhcCCCCCCeEEEECC-------
Confidence            4567899999999998764 5568888765211       123334444566665553   246777777763       


Q ss_pred             CCceEEEEEeecCC
Q 028629           98 SVSRIFLIFEYVPN  111 (206)
Q Consensus        98 ~~~~~~lv~e~~~~  111 (206)
                        +..+++||++++
T Consensus       108 --d~~vlvME~L~~  119 (418)
T PLN02756        108 --TMALIGMRYLEP  119 (418)
T ss_pred             --CCCEEEEeecCC
Confidence              356788999966

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=96.71  E-value=0.044  Score=43.62  Aligned_cols=140  Identities=14%  Similarity=0.233  Sum_probs=79.1

Q ss_pred             cceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCce------eeeccccccccccCCCCceEEEEEeec
Q 028629           36 SKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHL------VSALGHCFECYFDDSSVSRIFLIFEYV  109 (206)
Q Consensus        36 ~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i------~~~~~~~~~~~~~~~~~~~~~lv~e~~  109 (206)
                      .-..+|+....+|.. ++|.....  ....++..|+..+..+.-..+      ...-|-..... ..  ..+.+.+++|+
T Consensus        37 ~eN~~f~~~~~~g~~-iLki~~~~--~~~~~i~~el~~l~~La~~~i~v~~Pl~~~dG~~l~~~-~~--~~r~a~lf~~l  110 (331)
T COG2334          37 EENSNFRVQTEDGRY-ILKIYRPG--WTRAEIPFELALLQHLAERGIPVPAPLPSLDGELLEAL-SG--GPRPAALFEYL  110 (331)
T ss_pred             ccCceEEEEecCCCe-EEEEecCC--CCHHHHHHHHHHHHHHHHcCCCCCCCccCCCcchhhhc-cC--CceeEEEEEec
Confidence            445788888765555 88888754  345566778888887742222      22222222211 00  13788899999


Q ss_pred             CCCCHHH-HH------------------hcCC--C---CcccCHHH-------------HHHHHHHHHHHHHHHhcC---
Q 028629          110 PNGTLRS-WI------------------SEGH--A---WQSLTWTQ-------------RISAAIGVARGIQFLHTG---  149 (206)
Q Consensus       110 ~~~~L~~-~~------------------~~~~--~---~~~~~~~~-------------~~~~~~~i~~~l~~lH~~---  149 (206)
                      +|..+.. ..                  ....  .   .....|..             -.....++...+..+.+.   
T Consensus       111 ~G~~~~~~~~~~~~~~lG~~LgrlH~a~~~f~~~~p~~~~~~~w~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~  190 (331)
T COG2334         111 PGRPLERDDNAEQLEELGRMLGRLHLALRGFPFERPNALRRLEWDILEPRALLRLDLVEPEDLRAALLAALDRLLARLPA  190 (331)
T ss_pred             CCcCcCCCCcHHHHHHHHHHHHHHHHHhCcCCccCCCcccccchhhhcchhhhhhcccCchhhHHHHHHHHHHHHhhchh
Confidence            9877762 10                  0000  0   01122220             001223333444444432   


Q ss_pred             --CCCc--eeccCCccccEEecCCCc-eeEccCCccc
Q 028629          150 --IVPG--VFSNNLKITDILLDQNLV-AKISSYNLPL  181 (206)
Q Consensus       150 --~~~~--i~h~dl~p~nil~~~~~~-~kl~df~~a~  181 (206)
                        .+.+  ++|+|+.|.||+++.+.. +.+.||+-+.
T Consensus       191 ~lp~~~~~iIH~D~~~~NVl~d~~~~~~g~iDFdDa~  227 (331)
T COG2334         191 HLPALGDQIIHGDLHPDNVLFDDDTDVSGFIDFDDAG  227 (331)
T ss_pred             hCCcccceeeecCCCccceeEcCCCCeeeEEEccccc
Confidence              1134  999999999999998874 8899999885

>PRK12396 5-methylribose kinase; Reviewed

Probab=96.69  E-value=0.016  Score=47.06  Aligned_cols=74  Identities=8%  Similarity=0.004  Sum_probs=47.9

Q ss_pred             cceeccCcceeEEEEEEe-CCcEEEEEEeecC------CCccHHHHHHHHHHHhccC--CC-ceeeeccccccccccCCC
Q 028629           29 SAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK------KSHSTRNFMHHIELISKLR--HC-HLVSALGHCFECYFDDSS   98 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~------~~~~~~~~~~e~~~l~~l~--h~-~i~~~~~~~~~~~~~~~~   98 (206)
                      .+.||.|....||++... +++.++||.-...      -+...++..-|.+.|+...  -| .+++++.+-         
T Consensus        34 ~~eigdGnlN~VfrV~~~~~~~svIVKQAlp~vRv~~swpL~~~R~~~E~~aL~~~~~~~P~~VP~vy~~D---------  104 (409)
T PRK12396         34 CKEIGDGNLNYVFRVWDEQKNISVIVKQAGDTARISDEFKLSTNRIRIESDVLQLEEELAPGLVPKVYLFD---------  104 (409)
T ss_pred             eeEcCCCceEEEEEEeeCCCCceEEEEeccHhhccCCCCCCChHHHHHHHHHHHHHHhhCCCcCCeEEEEC---------
Confidence            557899999999999975 3567888865321      1344556667778777663  23 455565543         


Q ss_pred             CceEEEEEeecCC
Q 028629           99 VSRIFLIFEYVPN  111 (206)
Q Consensus        99 ~~~~~lv~e~~~~  111 (206)
                      .....++||+++.
T Consensus       105 ~e~~~~vMEdL~~  117 (409)
T PRK12396        105 SVMNCCVMEDLSD  117 (409)
T ss_pred             cHHhhHHHHhCcc
Confidence            3345677887743

>PTZ00384 choline kinase; Provisional

Probab=96.62  E-value=0.025  Score=46.02  Aligned_cols=32  Identities=16%  Similarity=0.019  Sum_probs=26.1

Q ss_pred             CceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       152 ~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      ...+|.|+-+.||+.++ ..+.++||.-|....
T Consensus       227 ~VfCHNDL~~gNIL~~~-~~l~lID~EYA~~n~  258 (383)
T PTZ00384        227 VLFCHNDLFFTNILDFN-QGIYFIDFDFAGFNY  258 (383)
T ss_pred             eeeeeccCCcccEEecC-CCEEEEEeccccCCc
Confidence            46799999999998764 469999999886543

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=96.60  E-value=0.0051  Score=49.20  Aligned_cols=75  Identities=16%  Similarity=0.164  Sum_probs=57.7

Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      +.+.|++|++. |+++. .+.      .-.+++...++.+.+..+.-+..+  .+.-|||+.-.||+|+ +|++.|+||-
T Consensus       298 ~~y~yl~~kdh-gt~is-~ik------~~~~~e~lsff~s~~sil~~lekk--f~fehrnlt~~niLId-~GnvtLIDfk  366 (488)
T COG5072         298 TLYLYLHFKDH-GTPIS-IIK------ADRSEEELSFFWSCISILDILEKK--FPFEHRNLTLDNILID-EGNVTLIDFK  366 (488)
T ss_pred             ceEEEEEEecC-Cceee-eee------cccHHHHHHHHHHHHHHHhhhhhc--CCcccccccccceeee-cCceEEEEee
Confidence            45667777765 43443 222      245778888888888877777776  7899999999999999 9999999999


Q ss_pred             cccccc
Q 028629          179 LPLLAE  184 (206)
Q Consensus       179 ~a~~~~  184 (206)
                      +++...
T Consensus       367 lsRl~~  372 (488)
T COG5072         367 LSRLSY  372 (488)
T ss_pred             eeeccc
Confidence            998543

>PRK06148 hypothetical protein; Provisional

Probab=96.30  E-value=0.082  Score=48.48  Aligned_cols=30  Identities=17%  Similarity=0.230  Sum_probs=25.6

Q ss_pred             CceeccCCccccEEecCCC--cee-EccCCccc
Q 028629          152 PGVFSNNLKITDILLDQNL--VAK-ISSYNLPL  181 (206)
Q Consensus       152 ~~i~h~dl~p~nil~~~~~--~~k-l~df~~a~  181 (206)
                      ..++|+|+.+.||+++.++  ++. |+|||-+.
T Consensus       203 ~~vIHgDln~~NiLv~~~~~~~isGiIDFgDa~  235 (1013)
T PRK06148        203 AQVIHNDANDYNILVDADDGERISGLIDFGDAV  235 (1013)
T ss_pred             cceECCCCCcccEEEcCCCCcceEEEEECcccc
Confidence            4799999999999999764  554 99999885

>PTZ00296 choline kinase; Provisional

Probab=96.30  E-value=0.053  Score=44.97  Aligned_cols=33  Identities=9%  Similarity=0.081  Sum_probs=26.9

Q ss_pred             CceeccCCccccEEecCCCceeEccCCccccccc
Q 028629          152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       152 ~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                      ..++|+|+.+.||+.+++ .++++||..|.....
T Consensus       284 ~VfCHNDl~~~NiL~~~~-~l~LIDfEYAg~ndp  316 (442)
T PTZ00296        284 IVFCHNDLQENNIINTNK-CLRLIDFEYSGYNFL  316 (442)
T ss_pred             eeEEeCCCCccceeecCC-CEEEEeecccccccH
Confidence            468999999999988654 499999999875443

>PHA03111 Ser/Thr kinase; Provisional

Probab=95.95  E-value=0.014  Score=46.23  Aligned_cols=57  Identities=12%  Similarity=0.002  Sum_probs=39.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHhcCC-CCceeccCCccccEEecCCC------------------ceeEccCCcccccc
Q 028629          128 TWTQRISAAIGVARGIQFLHTGI-VPGVFSNNLKITDILLDQNL------------------VAKISSYNLPLLAE  184 (206)
Q Consensus       128 ~~~~~~~~~~~i~~~l~~lH~~~-~~~i~h~dl~p~nil~~~~~------------------~~kl~df~~a~~~~  184 (206)
                      ..+.+..++.|++.-.-.+-+.+ -..++|.||||.||||-+..                  ++++.||.++++.+
T Consensus       277 ~~~YikfifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds~~~i~I~~~~~~~vF~Epi~~~LnDFDfSqv~~  352 (444)
T PHA03111        277 LVEYIKFIFLQIALLYIKIYELPCCDNFLHVDLKPDNILIFDSDEPISITLKDATYVFNEPIKACLNDFDFSQVAN  352 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCcceeeeccCCCCcEEEecCCCcEEEEECCeEEEeccchhhhhcccCHHHHcc
Confidence            35667778888886554454432 24799999999999995432                  35788888887543

>PRK10271 thiK thiamine kinase; Provisional

Probab=95.88  E-value=0.0063  Score=44.22  Aligned_cols=33  Identities=0%  Similarity=0.010  Sum_probs=28.0

Q ss_pred             CceeccCCccccEEecCCCceeEccCCccccccc
Q 028629          152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       152 ~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                      ...+|+|+.|.|+++++++ ++++||+.+...++
T Consensus        77 ~~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~gDp  109 (188)
T PRK10271         77 LAPLHMDVHAGNLVHSASG-LRLIDWEYAGDGDI  109 (188)
T ss_pred             eeeecCCCCCccEEEECCC-EEEEeCCcccCCCH
Confidence            4569999999999998777 88999999976554

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=95.73  E-value=0.1  Score=40.81  Aligned_cols=75  Identities=15%  Similarity=0.176  Sum_probs=42.7

Q ss_pred             cccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccC---CCceeeeccccccccccCCCCceEE
Q 028629           27 DTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR---HCHLVSALGHCFECYFDDSSVSRIF  103 (206)
Q Consensus        27 ~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~---h~~i~~~~~~~~~~~~~~~~~~~~~  103 (206)
                      ...+.++.|....+|+.. .+++.+.+|+-..   .....+..|.+-|+.+.   -..+++++.+...       .+..+
T Consensus        20 ~~~~~v~GG~i~~a~~~~-~~~~~~FvK~~~~---~~~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G~~-------~~~~f   88 (288)
T PF03881_consen   20 TSIEPVSGGDINEAYRLD-TDGGSYFVKVNSE---SGRDMFEGEAEGLKALAEANPIRVPKVIAWGEY-------DDDAF   88 (288)
T ss_dssp             -EEEEE--SSSSEEEEEE-TTS-EEEEEEEEG---GGCCHHHHHHHHHHHHCHTTTSBS--EEEEEE--------SSCCE
T ss_pred             eeeEecCCCChhheEEEE-CCCccEEEEecCh---hhHHHHHHHHHHHHHHHhcCCCCCCeEEEEEee-------cCCce
Confidence            445568888888888877 4577888897762   22345667777777773   3456666665533       33458


Q ss_pred             EEEeecCCC
Q 028629          104 LIFEYVPNG  112 (206)
Q Consensus       104 lv~e~~~~~  112 (206)
                      +++||++.+
T Consensus        89 Llle~l~~~   97 (288)
T PF03881_consen   89 LLLEFLEMG   97 (288)
T ss_dssp             EEEE-----
T ss_pred             EEEEeecCC
Confidence            999998765

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=95.68  E-value=0.016  Score=42.89  Aligned_cols=33  Identities=15%  Similarity=0.227  Sum_probs=23.0

Q ss_pred             CceeccCCccccEEe-cCCCceeEccCCcccccc
Q 028629          152 PGVFSNNLKITDILL-DQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       152 ~~i~h~dl~p~nil~-~~~~~~kl~df~~a~~~~  184 (206)
                      ..++|+|+.|.||++ ++++.++++||..|....
T Consensus       143 ~v~cHnDl~~~Nil~~~~~~~~~lIDfEya~~n~  176 (211)
T PF01633_consen  143 LVFCHNDLNPGNILINNKDGEVKLIDFEYAGYND  176 (211)
T ss_dssp             EEEE-S--SGGGEEETSSSSCEEE--GTT-EEEE
T ss_pred             ceEeeccCccccEEeccCCCeEEEecHHHHhhcc
Confidence            468999999999999 788999999999996543

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>PF05445 Pox_ser-thr_kin: Poxvirus serine/threonine protein kinase; InterPro: IPR008790 This family of proteins contain poxvirus serine/threonine protein kinases, which are essential for phosphorylation of virion proteins during virion assembly

Probab=95.53  E-value=0.02  Score=45.50  Aligned_cols=57  Identities=11%  Similarity=0.047  Sum_probs=38.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHhcCC-CCceeccCCccccEEecCC------------------CceeEccCCcccccc
Q 028629          128 TWTQRISAAIGVARGIQFLHTGI-VPGVFSNNLKITDILLDQN------------------LVAKISSYNLPLLAE  184 (206)
Q Consensus       128 ~~~~~~~~~~~i~~~l~~lH~~~-~~~i~h~dl~p~nil~~~~------------------~~~kl~df~~a~~~~  184 (206)
                      ..+.+..++.|++.-.--+-+.+ -..++|.||||.||||-+.                  -.+++.||.++++.+
T Consensus       273 ~~~YvkfifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds~~~i~I~~~~~~~vF~Epi~~~LnDFDfSqv~~  348 (434)
T PF05445_consen  273 NVEYVKFIFLQIALLYIKIYELPCCTNFLHVDLKPDNILIFDSKEPIRIKFGNRNYVFKEPIRCCLNDFDFSQVAN  348 (434)
T ss_pred             HHHHHHHHHHHHHHHHeeeecCCCcceeeecccCcCcEEEecCCCceEEEECCeEEEecccceeeecccCHHHhcc
Confidence            34566777888774332243321 2478999999999999533                  245788998887643

; GO: 0004672 protein kinase activity, 0005524 ATP binding

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=95.21  E-value=0.048  Score=42.14  Aligned_cols=32  Identities=16%  Similarity=0.130  Sum_probs=28.9

Q ss_pred             ceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          153 GVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       153 ~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      -++|+|+.|+|++.++.+.+.|+||.-|...+
T Consensus       154 v~cH~Dl~~~N~l~t~~~~l~LIDWEyAg~~D  185 (269)
T COG0510         154 VPCHNDLNPGNLLLTDKGGLFLIDWEYAGLND  185 (269)
T ss_pred             eeecCCCCccceEEcCCCcEEEEecccCCCcc
Confidence            58999999999999999999999998887554

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=95.05  E-value=0.011  Score=39.70  Aligned_cols=47  Identities=21%  Similarity=0.376  Sum_probs=35.4

Q ss_pred             CCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHh
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELIS   75 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~   75 (206)
                      .|. .+.|++|+.|+|++|++++|+.||+|+...   ...+.+...+.+++
T Consensus        13 ~fd-~~PlasASiaQVh~a~l~~g~~VaVKV~rP---~i~~~i~~Dl~~l~   59 (119)
T PF03109_consen   13 EFD-PEPLASASIAQVHRARLKDGEEVAVKVQRP---GIEEQIEADLRILR   59 (119)
T ss_pred             HCC-cchhhheehhhheeeeecccchhhhhhcch---HHHHHHHHHHHHHH
Confidence            344 457899999999999998899999998863   33445555666555

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=94.81  E-value=0.076  Score=41.66  Aligned_cols=29  Identities=14%  Similarity=0.228  Sum_probs=25.6

Q ss_pred             CceeccCCccccEEecCCCceeEccCCccc
Q 028629          152 PGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       152 ~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .+++|+|+.+.||+++. +.+.|+||+.+.
T Consensus       187 ~~liHgD~~~~Nil~~~-~~i~lIDfd~~~  215 (313)
T TIGR02906       187 RGFCHQDYAYHNILLKD-NEVYVIDFDYCT  215 (313)
T ss_pred             CceEcCCCCcccEEEeC-CcEEEEECcccc
Confidence            58999999999999987 678899999764

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=94.01  E-value=0.044  Score=40.21  Aligned_cols=34  Identities=9%  Similarity=0.115  Sum_probs=28.0

Q ss_pred             CceeccCCccccEEecCCC-----ceeEccCCccccccc
Q 028629          152 PGVFSNNLKITDILLDQNL-----VAKISSYNLPLLAEN  185 (206)
Q Consensus       152 ~~i~h~dl~p~nil~~~~~-----~~kl~df~~a~~~~~  185 (206)
                      ..++|||+.+.|+++..++     .+.+.||..+....+
T Consensus       120 ~vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~~g~p  158 (196)
T smart00587      120 NVLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHYGSP  158 (196)
T ss_pred             eEEeeCCCCccceeeccCCCCCccceEEEecccCCcCCh
Confidence            4789999999999998543     689999999876543

subfamily of choline kinases

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	206
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		1e-21
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		2e-21
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		2e-21
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		3e-21
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		2e-16
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		2e-16
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		2e-16
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		4e-15
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		9e-10
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		2e-09
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		1e-08
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		1e-08
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		1e-08
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-08
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		1e-08
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-08
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-08
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		2e-08
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		2e-08
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		2e-08
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		2e-08
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		2e-08
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		2e-08
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		2e-08
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		2e-08
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		2e-08
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		3e-08
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		3e-08
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		3e-08
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		4e-08
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		4e-08
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		4e-08
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		4e-08
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		5e-08
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		5e-08
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		5e-08
3kmw_A	271	Crystal Structure Of The IlkALPHA-Parvin Core Compl		6e-08
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		6e-08
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		6e-08
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		6e-08
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		1e-07
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-07
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		1e-07
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		2e-07
1fvr_A	327	Tie2 Kinase Domain Length = 327		2e-07
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		2e-07
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		3e-07
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		4e-07
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		4e-07
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		4e-07
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		4e-07
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		5e-07
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		5e-07
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		5e-07
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		6e-07
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		6e-07
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		6e-07
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		6e-07
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		6e-07
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		6e-07
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		6e-07
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		6e-07
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		6e-07
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		6e-07
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		6e-07
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		6e-07
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		6e-07
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		6e-07
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		6e-07
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		7e-07
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		7e-07
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		7e-07
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		7e-07
3kmu_A	271	Crystal Structure Of The IlkALPHA-Parvin Core Compl		8e-07
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		9e-07
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		9e-07
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		9e-07
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		1e-06
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		1e-06
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		1e-06
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		1e-06
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		1e-06
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		1e-06
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		2e-06
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		2e-06
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		3e-06
2bfx_B	284	Mechanism Of Aurora-B Activation By Incenp And Inhi		4e-06
2vrx_A	285	Structure Of Aurora B Kinase In Complex With Zm4474		4e-06
2bfy_A	284	Complex Of Aurora-B With Incenp And Hesperidin. Len		5e-06
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		6e-06
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		8e-06
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		9e-06
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		9e-06
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		1e-05
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		1e-05
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		1e-05
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		1e-05
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		1e-05
3a4o_X	286	Lyn Kinase Domain Length = 286		1e-05
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		1e-05
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		2e-05
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		2e-05
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		2e-05
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		3e-05
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		3e-05
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		3e-05
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		3e-05
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		3e-05
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		4e-05
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		4e-05
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		4e-05
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		4e-05
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		4e-05
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		4e-05
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		4e-05
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		4e-05
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		4e-05
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		4e-05
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		4e-05
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		4e-05
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		4e-05
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		4e-05
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		5e-05
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		5e-05
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		7e-05
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		7e-05
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		7e-05
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		7e-05
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		7e-05
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		8e-05
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		8e-05
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		8e-05
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		1e-04
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		1e-04
4af3_A	292	Human Aurora B Kinase In Complex With Incenp And Vx		1e-04
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		1e-04
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		1e-04
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		1e-04
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		2e-04
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		2e-04
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		2e-04
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		2e-04
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		2e-04
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		2e-04
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		5e-04
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		5e-04
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		5e-04
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		6e-04
2a19_B	284	Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Leng		6e-04
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		8e-04
3vw6_A	269	Crystal Structure Of Human Apoptosis Signal-Regulat		8e-04
2clq_A	295	Structure Of Mitogen-Activated Protein Kinase Kinas		9e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 98/194 (50%), Gaps = 18/194 (9%)
Query: 12  RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTR-NFMHH 70
           + FSL EL+ A++NF     +G G  G++Y+GRL +GT +A++ LK ++       F   
Sbjct: 26  KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTE 85
Query: 71  IELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQ-SLTW 129
           +E+IS   H +L+   G C        + +   L++ Y+ NG++ S + E    Q  L W
Sbjct: 86  VEMISMAVHRNLLRLRGFCM-------TPTERLLVYPYMANGSVASCLRERPESQPPLDW 138
Query: 130 TQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK- 188
            +R   A+G ARG+ +LH    P +   ++K  +ILLD+   A +  + L  L +  +  
Sbjct: 139 PKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXH 198
Query: 189 --------VGHVTP 194
                   +GH+ P
Sbjct: 199 VXXAVRGTIGHIAP 212

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 94/171 (54%), Gaps = 12/171 (7%)
Query: 10  AYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMH 69
           +YR   L +LEEATNNFD    +G G  G++Y+G L++G  +A++    + S     F  
Sbjct: 26  SYRV-PLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFET 84
Query: 70  HIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTL-RSWISEGHAWQSLT 128
            IE +S  RH HLVS +G C E        + + LI++Y+ NG L R          S++
Sbjct: 85  EIETLSFCRHPHLVSLIGFCDE-------RNEMILIYKYMENGNLKRHLYGSDLPTMSMS 137
Query: 129 WTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           W QR+   IG ARG+ +LHT     +   ++K  +ILLD+N V KI+ + +
Sbjct: 138 WEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDFGI 185

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 94/171 (54%), Gaps = 12/171 (7%)
Query: 10  AYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMH 69
           +YR   L +LEEATNNFD    +G G  G++Y+G L++G  +A++    + S     F  
Sbjct: 26  SYRV-PLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFET 84
Query: 70  HIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTL-RSWISEGHAWQSLT 128
            IE +S  RH HLVS +G C E        + + LI++Y+ NG L R          S++
Sbjct: 85  EIETLSFCRHPHLVSLIGFCDE-------RNEMILIYKYMENGNLKRHLYGSDLPTMSMS 137
Query: 129 WTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           W QR+   IG ARG+ +LHT     +   ++K  +ILLD+N V KI+ + +
Sbjct: 138 WEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDFGI 185

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 99/198 (50%), Gaps = 18/198 (9%)
Query: 8   LPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTR-N 66
           L   + FSL EL+ A++NF     +G G  G++Y+GRL +G  +A++ LK +++      
Sbjct: 14  LGQLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQ 73
Query: 67  FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQ- 125
           F   +E+IS   H +L+   G C        + +   L++ Y+ NG++ S + E    Q 
Sbjct: 74  FQTEVEMISMAVHRNLLRLRGFCM-------TPTERLLVYPYMANGSVASCLRERPESQP 126
Query: 126 SLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN 185
            L W +R   A+G ARG+ +LH    P +   ++K  +ILLD+   A +  + L  L + 
Sbjct: 127 PLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDY 186
Query: 186 AE---------KVGHVTP 194
            +          +GH+ P
Sbjct: 187 KDXHVXXAVRGXIGHIAP 204

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 21/184 (11%)
Query: 11  YRTFSLEELEEATNNFDTSAF------MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST 64
           + +FS  EL+  TNNFD          MGEG  G +Y+G + N T +A++ L      +T
Sbjct: 12  FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTT-VAVKKLAAMVDITT 70
Query: 65  ----RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISE 120
               + F   I++++K +H +LV  LG  F    DD     + L++ Y+PNG+L   +S 
Sbjct: 71  EELKQQFDQEIKVMAKCQHENLVELLG--FSSDGDD-----LCLVYVYMPNGSLLDRLSC 123
Query: 121 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 180
                 L+W  R   A G A GI FLH          ++K  +ILLD+   AKIS + L 
Sbjct: 124 LDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLA 180
Query: 181 LLAE 184
             +E
Sbjct: 181 RASE 184

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 21/184 (11%)
Query: 11  YRTFSLEELEEATNNFDTSAF------MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST 64
           + +FS  EL+  TNNFD          MGEG  G +Y+G + N T +A++ L      +T
Sbjct: 6   FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTT-VAVKKLAAMVDITT 64
Query: 65  ----RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISE 120
               + F   I++++K +H +LV  LG  F    DD     + L++ Y+PNG+L   +S 
Sbjct: 65  EELKQQFDQEIKVMAKCQHENLVELLG--FSSDGDD-----LCLVYVYMPNGSLLDRLSC 117
Query: 121 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 180
                 L+W  R   A G A GI FLH          ++K  +ILLD+   AKIS + L 
Sbjct: 118 LDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLA 174
Query: 181 LLAE 184
             +E
Sbjct: 175 RASE 178

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 21/184 (11%)
Query: 11  YRTFSLEELEEATNNFDTSAF------MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST 64
           + +FS  EL+  TNNFD          MGEG  G +Y+G + N T +A++ L      +T
Sbjct: 12  FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTT-VAVKKLAAMVDITT 70
Query: 65  ----RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISE 120
               + F   I++++K +H +LV  LG  F    DD     + L++ Y+PNG+L   +S 
Sbjct: 71  EELKQQFDQEIKVMAKCQHENLVELLG--FSSDGDD-----LCLVYVYMPNGSLLDRLSC 123
Query: 121 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 180
                 L+W  R   A G A GI FLH          ++K  +ILLD+   AKIS + L 
Sbjct: 124 LDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLA 180
Query: 181 LLAE 184
             +E
Sbjct: 181 RASE 184

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 88/184 (47%), Gaps = 21/184 (11%)
Query: 11  YRTFSLEELEEATNNFDTSAF------MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST 64
           + +FS  EL+  TNNFD           GEG  G +Y+G + N T +A++ L      +T
Sbjct: 3   FHSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYVNNTT-VAVKKLAAMVDITT 61
Query: 65  ----RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISE 120
               + F   I++ +K +H +LV  LG  F    DD     + L++ Y PNG+L   +S 
Sbjct: 62  EELKQQFDQEIKVXAKCQHENLVELLG--FSSDGDD-----LCLVYVYXPNGSLLDRLSC 114
Query: 121 GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 180
                 L+W  R   A G A GI FLH          ++K  +ILLD+   AKIS + L 
Sbjct: 115 LDGTPPLSWHXRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLA 171
Query: 181 LLAE 184
             +E
Sbjct: 172 RASE 175

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 77/150 (51%), Gaps = 11/150 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTR--NFMHHIELISKLRHCHLVSALGHC 89
           +G GS G ++R    +G+ +A++ L  +  H+ R   F+  + ++ +LRH ++V  +G  
Sbjct: 45  IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTG 149
                  +    + ++ EY+  G+L   + +  A + L   +R+S A  VA+G+ +LH  
Sbjct: 104 -------TQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR 156
Query: 150 IVPGVFSNNLKITDILLDQNLVAKISSYNL 179
             P +   NLK  ++L+D+    K+  + L
Sbjct: 157 -NPPIVHRNLKSPNLLVDKKYTVKVCDFGL 185

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 77/150 (51%), Gaps = 11/150 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTR--NFMHHIELISKLRHCHLVSALGHC 89
           +G GS G ++R    +G+ +A++ L  +  H+ R   F+  + ++ +LRH ++V  +G  
Sbjct: 45  IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTG 149
                  +    + ++ EY+  G+L   + +  A + L   +R+S A  VA+G+ +LH  
Sbjct: 104 -------TQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR 156
Query: 150 IVPGVFSNNLKITDILLDQNLVAKISSYNL 179
             P +   +LK  ++L+D+    K+  + L
Sbjct: 157 -NPPIVHRDLKSPNLLVDKKYTVKVCDFGL 185

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 77
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
             +   S   I+++ EY+  G+L  ++ +G   + L   Q +  A  +A G+ ++     
Sbjct: 78  -LYAVVSEEPIYIVIEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVERM-- 133
Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 134 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 77
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
             +   S   I+++ EY+  G+L  ++ +G   + L   Q +  A  +A G+ ++     
Sbjct: 78  -LYAVVSEEPIYIVIEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVERM-- 133
Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 134 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 77
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
             +   S   I+++ EY+  G L  ++ +G   + L   Q +  A  +A G+ ++     
Sbjct: 78  -LYAVVSEEPIYIVMEYMSKGCLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVERM-- 133
Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 134 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 30/208 (14%)
Query: 4   GALGLPAYRTF-SLEELEEATN------------NFDTSAFMGEGSKGQMYRGRLK---- 46
           G L LP  RTF      E+ T             N      +G G  G++  GRLK    
Sbjct: 12  GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 47  NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
               +AI+ LK+  +   R +F+    ++ +  H +++   G         +    + ++
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL 165
            EY+ NG+L S++ +  A    T  Q +    G+A G+++L      G    +L   +IL
Sbjct: 125 TEYMENGSLDSFLRKHDA--QFTVIQLVGMLRGIASGMKYLSDM---GFVHRDLAARNIL 179
Query: 166 LDQNLVAKISSYNLPLLAENAEKVGHVT 193
           ++ NLV K+S + L  + E+  +  + T
Sbjct: 180 INSNLVCKVSDFGLSRVLEDDPEAAYTT 207

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 19  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 70
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
             +   S   I+++ EY+  G+L  ++ +G   + L   Q +  A  +A G+ ++     
Sbjct: 71  -LYAVVSEEPIYIVTEYMSKGSLLDFL-KGETGKYLRLPQLVDMAAQIASGMAYVERM-- 126
Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 127 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 161

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 30/208 (14%)
Query: 4   GALGLPAYRTF-SLEELEEATN------------NFDTSAFMGEGSKGQMYRGRLK---- 46
           G L LP  RTF      E+ T             N      +G G  G++  GRLK    
Sbjct: 12  GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 47  NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
               +AI+ LK+  +   R +F+    ++ +  H +++   G         +    + ++
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL 165
            EY+ NG+L S++ +  A    T  Q +    G+A G+++L      G    +L   +IL
Sbjct: 125 TEYMENGSLDSFLRKHDA--QFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNIL 179
Query: 166 LDQNLVAKISSYNLPLLAENAEKVGHVT 193
           ++ NLV K+S + L  + E+  +  + T
Sbjct: 180 INSNLVCKVSDFGLARVLEDDPEAAYTT 207

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 30/208 (14%)
Query: 4   GALGLPAYRTF-SLEELEEATN------------NFDTSAFMGEGSKGQMYRGRLK---- 46
           G L LP  RTF      E+ T             N      +G G  G++  GRLK    
Sbjct: 12  GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 47  NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
               +AI+ LK+  +   R +F+    ++ +  H +++   G         +    + ++
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL 165
            EY+ NG+L S++ +  A    T  Q +    G+A G+++L      G    +L   +IL
Sbjct: 125 TEYMENGSLDSFLRKHDA--QFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNIL 179
Query: 166 LDQNLVAKISSYNLPLLAENAEKVGHVT 193
           ++ NLV K+S + L  + E+  +  + T
Sbjct: 180 INSNLVCKVSDFGLSRVLEDDPEAAYTT 207

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 15  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 66
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
             +   S   I+++ EY+  G+L  ++ +G   + L   Q +  A  +A G+ ++     
Sbjct: 67  -LYAVVSEEPIYIVTEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVERM-- 122
Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 123 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 157

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 77
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
             +   S   I+++ EY+  G+L  ++ +G   + L   Q +  A  +A G+ ++     
Sbjct: 78  -LYAVVSEEPIYIVCEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVERM-- 133
Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 134 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 30/208 (14%)
Query: 4   GALGLPAYRTF-----------SLEEL--EEATNNFDTSAFMGEGSKGQMYRGRLK---- 46
           G L LP  RTF           ++ E   E    N      +G G  G++  GRLK    
Sbjct: 12  GHLKLPGLRTFVDPHTYEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 47  NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
               +AI+ LK+  +   R +F+    ++ +  H +++   G         +    + ++
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL 165
            EY+ NG+L S++ +  A    T  Q +    G+A G+++L      G    +L   +IL
Sbjct: 125 TEYMENGSLDSFLRKHDA--QFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNIL 179
Query: 166 LDQNLVAKISSYNLPLLAENAEKVGHVT 193
           ++ NLV K+S + L  + E+  +  + T
Sbjct: 180 INSNLVCKVSDFGLSRVLEDDPEAAYTT 207

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV       E
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 250
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
                     I+++ EY+  G+L  ++ +G   + L   Q +  A  +A G+ ++     
Sbjct: 251 --------EPIYIVTEYMSKGSLLDFL-KGETGKYLRLPQLVDMAAQIASGMAYVERM-- 299
Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 300 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 334

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 17  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 68
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
             +   S   I+++ EY+  G+L  ++ +G   + L   Q +  A  +A G+ ++     
Sbjct: 69  -LYAVVSEEPIYIVTEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVERM-- 124
Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 125 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 159

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 77
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
             +   S   I+++ EY+  G+L  ++ +G   + L   Q +  A  +A G+ ++     
Sbjct: 78  -LYAVVSEEPIYIVTEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVERM-- 133
Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 134 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV       E
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 250
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
                     I+++ EY+  G+L  ++ +G   + L   Q +  A  +A G+ ++     
Sbjct: 251 --------EPIYIVTEYMSKGSLLDFL-KGETGKYLRLPQLVDMAAQIASGMAYVERM-- 299
Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 300 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 334

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV       E
Sbjct: 275 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 333
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
                     I+++ EY+  G+L  ++ +G   + L   Q +  A  +A G+ ++     
Sbjct: 334 --------EPIYIVTEYMSKGSLLDFL-KGETGKYLRLPQLVDMAAQIASGMAYVERM-- 382
Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 383 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 417

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 30/208 (14%)
Query: 4   GALGLPAYRTF-SLEELEEATN------------NFDTSAFMGEGSKGQMYRGRLK---- 46
           G L LP  RTF      E+ T             N      +G G  G++  GRLK    
Sbjct: 12  GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 47  NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
               +AI+ LK+  +   R +F+    ++ +  H +++   G         +    + ++
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL 165
            EY+ NG+L S++ +  A    T  Q +    G+A G+++L      G    +L   +IL
Sbjct: 125 TEYMENGSLDSFLRKHDA--QFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNIL 179
Query: 166 LDQNLVAKISSYNLPLLAENAEKVGHVT 193
           ++ NLV K+S + L  + E+  +  + T
Sbjct: 180 INSNLVCKVSDFGLGRVLEDDPEAAYTT 207

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV       E
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 250
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
                     I+++ EY+  G+L  ++ +G   + L   Q +  A  +A G+ ++     
Sbjct: 251 --------EPIYIVGEYMSKGSLLDFL-KGETGKYLRLPQLVDMAAQIASGMAYVERM-- 299
Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 300 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 334

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 77
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
             +   S   I+++ EY+  G L  ++ +G   + L   Q +  A  +A G+ ++     
Sbjct: 78  -LYAVVSEEPIYIVTEYMSKGCLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVERM-- 133
Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 134 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 90/208 (43%), Gaps = 30/208 (14%)
Query: 4   GALGLPAYRTF-SLEELEEATN------------NFDTSAFMGEGSKGQMYRGRLK---- 46
           G L LP  RT+      E+ T             N      +G G  G++  GRLK    
Sbjct: 12  GHLKLPGLRTYVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 47  NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
               +AI+ LK+  +   R +F+    ++ +  H +++   G         +    + ++
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL 165
            EY+ NG+L S++ +  A    T  Q +    G+A G+++L      G    +L   +IL
Sbjct: 125 TEYMENGSLDSFLRKHDA--QFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNIL 179
Query: 166 LDQNLVAKISSYNLPLLAENAEKVGHVT 193
           ++ NLV K+S + L  + E+  +  + T
Sbjct: 180 INSNLVCKVSDFGLSRVLEDDPEAAYTT 207

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ K+RH  LV        
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKIRHEKLVQ------- 77
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
             +   S   I+++ EY+  G+L  ++ +G   + L   Q +  A  +A G+ ++     
Sbjct: 78  -LYAVVSEEPIYIVTEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVERM-- 133
Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 134 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 77
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
             +   S   I+++ EY+  G+L  ++ +G   + L   Q +  A  +A G+ ++     
Sbjct: 78  -LYAVVSEEPIYIVTEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVERM-- 133
Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L   +IL+ +NLV K++ + L  L E+ E
Sbjct: 134 -NYVHRDLAAANILVGENLVCKVADFGLARLIEDNE 168

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 91/208 (43%), Gaps = 30/208 (14%)
Query: 4   GALGLPAYRTF-----------SLEEL--EEATNNFDTSAFMGEGSKGQMYRGRLK---- 46
           G L LP  RT+           ++ E   E    N      +G G  G++  GRLK    
Sbjct: 10  GHLKLPGLRTYVDPHTYEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 69
Query: 47  NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
               +AI+ LK+  +   R +F+    ++ +  H +++   G         +    + ++
Sbjct: 70  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 122
Query: 106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL 165
            EY+ NG+L S++ +  A    T  Q +    G+A G+++L      G    +L   +IL
Sbjct: 123 TEYMENGSLDSFLRKHDA--QFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNIL 177
Query: 166 LDQNLVAKISSYNLPLLAENAEKVGHVT 193
           ++ NLV K+S + L  + E+  +  + T
Sbjct: 178 INSNLVCKVSDFGLSRVLEDDPEAAYTT 205

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 91/208 (43%), Gaps = 30/208 (14%)
Query: 4   GALGLPAYRTF-----------SLEEL--EEATNNFDTSAFMGEGSKGQMYRGRLK---- 46
           G L LP  RT+           ++ E   E    N      +G G  G++  GRLK    
Sbjct: 12  GHLKLPGLRTYVDPHTYEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 47  NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
               +AI+ LK+  +   R +F+    ++ +  H +++   G         +    + ++
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL 165
            EY+ NG+L S++ +  A    T  Q +    G+A G+++L      G    +L   +IL
Sbjct: 125 TEYMENGSLDSFLRKHDA--QFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNIL 179
Query: 166 LDQNLVAKISSYNLPLLAENAEKVGHVT 193
           ++ NLV K+S + L  + E+  +  + T
Sbjct: 180 INSNLVCKVSDFGLSRVLEDDPEAAYTT 207

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV       E
Sbjct: 193 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGNMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 251
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
                     I+++ EY+  G+L  ++ +G   + L   Q +  A  +A G+ ++     
Sbjct: 252 --------EPIYIVTEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVERM-- 300
Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 301 -NYVHRDLRAANILVGENLVCKVADFGLGRLIEDNE 335

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 16  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 67
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
             +   S   I ++ EY+  G+L  ++ +G   + L   Q +  A  +A G+ ++     
Sbjct: 68  -LYAVVSEEPIXIVTEYMSKGSLLDFL-KGETGKYLRLPQLVDMAAQIASGMAYVERM-- 123
Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 124 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 158

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 23  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 74
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
             +   S   I+++ EY+  G+L  ++ +G   + L   Q +  +  +A G+ ++     
Sbjct: 75  -LYAVVSEEPIYIVTEYMNKGSLLDFL-KGETGKYLRLPQLVDMSAQIASGMAYVERM-- 130
Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 131 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 165

>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Mgatp) Length = 271

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHC 89
           + E   G++++GR + G  I ++ LK++   +  +R+F      +    H +++  LG C
Sbjct: 18  LNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGAC 76
Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTG 149
                         LI  ++P G+L + + EG  +  +  +Q +  A+ +ARG+ FLHT 
Sbjct: 77  -----QSPPAPHPTLITHWMPYGSLYNVLHEGTNF-VVDQSQAVKFALDMARGMAFLHT- 129
Query: 150 IVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           + P +  + L    +++D+++ A+IS  ++
Sbjct: 130 LEPLIPRHALNSRSVMIDEDMTARISMADV 159

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV        
Sbjct: 23  LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 74
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
             +   S   I+++ EY+  G+L  ++ +G   + L   Q +  +  +A G+ ++     
Sbjct: 75  -LYAVVSEEPIYIVTEYMNKGSLLDFL-KGETGKYLRLPQLVDMSAQIASGMAYVERM-- 130
Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 131 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 165

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R KN  FI A++ L   +++K+         +E+ S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF DS  +R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 66  RHPNILRLYG-----YFHDS--TRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITD 163
            A+      + +H  I P       +  LKI D
Sbjct: 119 NALSYCHSKKVIHRDIKPENLLLGSAGELKIAD 151

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST----RNFMHHIELISKL-R 78
           N+      +GEG+ GQ+ + R+K         +K  K +++    R+F   +E++ KL  
Sbjct: 22  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 81
Query: 79  HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQ------------- 125
           H ++++ LG C            ++L  EY P+G L  ++ +    +             
Sbjct: 82  HPNIINLLGAC-------EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAS 134
Query: 126 SLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           +L+  Q +  A  VARG+ +L           NL   +IL+ +N VAKI+ + L
Sbjct: 135 TLSSQQLLHFAADVARGMDYLSQ---KQFIHRNLAARNILVGENYVAKIADFGL 185

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 81/179 (45%), Gaps = 17/179 (9%)
Query: 20  EEATNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTR-NFMHHIELI 74
           E    N      +G G  G++  GRLK        +AI+ LK+  +   R +F+    ++
Sbjct: 29  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 88
Query: 75  SKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRIS 134
            +  H +++   G         +    + ++ EY+ NG+L S++ +  A    T  Q + 
Sbjct: 89  GQFDHPNIIRLEGVV-------TKSKPVMIVTEYMENGSLDSFLRKHDA--QFTVIQLVG 139
Query: 135 AAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 193
              G+A G+++L      G    +L   +IL++ NLV K+S + L  + E+  +  + T
Sbjct: 140 MLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 195

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 30/208 (14%)
Query: 4   GALGLPAYRTF-SLEELEEATN------------NFDTSAFMGEGSKGQMYRGRLK---- 46
           G L LP  RTF      E+ T             N      +G G  G++  GRLK    
Sbjct: 12  GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 47  NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
               +AI+ LK+  +   R +F+    ++ +  H +++   G         +    + ++
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL 165
            E + NG+L S++ +  A    T  Q +    G+A G+++L      G    +L   +IL
Sbjct: 125 TEXMENGSLDSFLRKHDA--QFTVIQLVGMLRGIASGMKYLSDM---GAVHRDLAARNIL 179
Query: 166 LDQNLVAKISSYNLPLLAENAEKVGHVT 193
           ++ NLV K+S + L  + E+  +  + T
Sbjct: 180 INSNLVCKVSDFGLSRVLEDDPEAAYTT 207

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 81/179 (45%), Gaps = 17/179 (9%)
Query: 20  EEATNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTR-NFMHHIELI 74
           E    N      +G G  G++  GRLK        +AI+ LK+  +   R +F+    ++
Sbjct: 12  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 71
Query: 75  SKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRIS 134
            +  H +++   G         +    + ++ EY+ NG+L S++ +  A    T  Q + 
Sbjct: 72  GQFDHPNIIRLEGVV-------TKSKPVMIVTEYMENGSLDSFLRKHDA--QFTVIQLVG 122
Query: 135 AAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 193
              G+A G+++L      G    +L   +IL++ NLV K+S + L  + E+  +  + T
Sbjct: 123 MLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 178

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST----RNFMHHIELISKL-R 78
           N+      +GEG+ GQ+ + R+K         +K  K +++    R+F   +E++ KL  
Sbjct: 15  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 74
Query: 79  HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQ------------- 125
           H ++++ LG C            ++L  EY P+G L  ++ +    +             
Sbjct: 75  HPNIINLLGAC-------EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAS 127
Query: 126 SLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           +L+  Q +  A  VARG+ +L           +L   +IL+ +N VAKI+ + L
Sbjct: 128 TLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGL 178

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST----RNFMHHIELISKL-R 78
           N+      +GEG+ GQ+ + R+K         +K  K +++    R+F   +E++ KL  
Sbjct: 25  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 84
Query: 79  HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQ------------- 125
           H ++++ LG C            ++L  EY P+G L  ++ +    +             
Sbjct: 85  HPNIINLLGAC-------EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAS 137
Query: 126 SLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           +L+  Q +  A  VARG+ +L           +L   +IL+ +N VAKI+ + L
Sbjct: 138 TLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGL 188

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 13/156 (8%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G     T +AI+ LK   + S  +F+   +++ KL+H  LV       E
Sbjct: 17  LGNGQFGEVWMGTWNGNTKVAIKTLK-PGTMSPESFLEEAQIMKKLKHDKLVQLYAVVSE 75
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
                     I+++ EY+  G+L  ++ +G   ++L     +  A  VA G+ ++     
Sbjct: 76  --------EPIYIVTEYMNKGSLLDFLKDGEG-RALKLPNLVDMAAQVAAGMAYIERM-- 124
Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  +IL+   L+ KI+ + L  L E+ E
Sbjct: 125 -NYIHRDLRSANILVGNGLICKIADFGLARLIEDNE 159

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 26/164 (15%)
Query: 32  MGEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSA 85
           +GEG+ G+++     N         +A++ LK    ++ ++F    EL++ L+H H+V  
Sbjct: 21  LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKF 80
Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI----------SEGHAWQSLTWTQRISA 135
            G C E          + ++FEY+ +G L  ++          +EG+    LT +Q +  
Sbjct: 81  YGVCVEG-------DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHI 133
Query: 136 AIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           A  +A G+ +L +         +L   + L+ +NL+ KI  + +
Sbjct: 134 AQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKIGDFGM 174

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 32  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 92  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 144
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            A+      + +H  I P       +  LKI D 
Sbjct: 145 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 178

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 32  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 92  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 144
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            A+      + +H  I P       +  LKI D 
Sbjct: 145 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 178

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 90/208 (43%), Gaps = 30/208 (14%)
Query: 4   GALGLPAYRTF-----------SLEEL--EEATNNFDTSAFMGEGSKGQMYRGRLK---- 46
           G L LP  RT+           ++ E   E    N      +G G  G++  GRLK    
Sbjct: 12  GHLKLPGLRTYVDPHTYEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 47  NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
               +AI+ LK+  +   R +F+    ++ +  H +++   G         +    + ++
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL 165
            E + NG+L S++ +  A    T  Q +    G+A G+++L      G    +L   +IL
Sbjct: 125 TEXMENGSLDSFLRKHDA--QFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNIL 179
Query: 166 LDQNLVAKISSYNLPLLAENAEKVGHVT 193
           ++ NLV K+S + L  + E+  +  + T
Sbjct: 180 INSNLVCKVSDFGLSRVLEDDPEAAYTT 207

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 47  NGTFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
            G  +A++ LK       R+ +   I+++  L H H++   G C     +D+  + + L+
Sbjct: 59  TGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCC-----EDAGAASLQLV 113
Query: 106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL 165
            EYVP G+LR ++       S+   Q +  A  +  G+ +LH          +L   ++L
Sbjct: 114 MEYVPLGSLRDYLPR----HSIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVL 166
Query: 166 LDQNLVAKISSYNL 179
           LD + + KI  + L
Sbjct: 167 LDNDRLVKIGDFGL 180

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 23  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 82
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 83  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 135
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            A+      + +H  I P       +  LKI D 
Sbjct: 136 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 169

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 66  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            A+      + +H  I P       +  LKI D 
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 152

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 69  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 121
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            A+      + +H  I P       +  LKI D 
Sbjct: 122 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 155

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 68  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 120
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            A+      + +H  I P       +  LKI D 
Sbjct: 121 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 154

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 66  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            A+      + +H  I P       +  LKI D 
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 152

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 66  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            A+      + +H  I P       +  LKI D 
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 152

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 71  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 123
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            A+      + +H  I P       +  LKI D 
Sbjct: 124 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 157

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 18/153 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 66  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITD 163
            A+      + +H  I P       +  LKI D
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIAD 151

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 67  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 119
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            A+      + +H  I P       +  LKI D 
Sbjct: 120 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 153

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 69  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 121
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            A+      + +H  I P       +  LKI D 
Sbjct: 122 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 155

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 67  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 119
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            A+      + +H  I P       +  LKI D 
Sbjct: 120 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 153

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 66  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            A+      + +H  I P       +  LKI D 
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 152

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 18/153 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 69  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 121
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITD 163
            A+      + +H  I P       +  LKI D
Sbjct: 122 NALSYCHSKRVIHRDIKPENLLLGSAGELKIAD 154

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 18/153 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 5   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 64
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 65  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 117
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITD 163
            A+      + +H  I P       +  LKI D
Sbjct: 118 NALSYCHSKRVIHRDIKPENLLLGSAGELKIAD 150

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 71  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 123
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            A+      + +H  I P       +  LKI D 
Sbjct: 124 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 157

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 67  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 119
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            A+      + +H  I P       +  LKI D 
Sbjct: 120 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 153

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 69  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 121
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            A+      + +H  I P       +  LKI D 
Sbjct: 122 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 155

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 18/153 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 69  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 121
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITD 163
            A+      + +H  I P       +  LKI D
Sbjct: 122 NALSYCHSKRVIHRDIKPENLLLGSAGELKIAD 154

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 66  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            A+      + +H  I P       +  LKI D 
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 152

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 10  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 69
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 70  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 122
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            A+      + +H  I P       +  LKI D 
Sbjct: 123 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 156

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 71  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 123
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            A+      + +H  I P       +  LKI D 
Sbjct: 124 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 157

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 66  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            A+      + +H  I P       +  LKI D 
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 152

>pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Apo) Length = 271

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 72/150 (48%), Gaps = 10/150 (6%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHC 89
           + E   G++++GR + G  I ++ LK++   +  +R+F      +    H +++  LG C
Sbjct: 18  LNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGAC 76
Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTG 149
                         LI  + P G+L + + EG  +  +  +Q +  A+  ARG  FLHT 
Sbjct: 77  -----QSPPAPHPTLITHWXPYGSLYNVLHEGTNF-VVDQSQAVKFALDXARGXAFLHT- 129
Query: 150 IVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           + P +  + L    + +D++  A+IS  ++
Sbjct: 130 LEPLIPRHALNSRSVXIDEDXTARISXADV 159

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW---ISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P G +      +S+    ++ T+   ++
Sbjct: 71  RHPNILRLYG-----YFHDAT--RVYLILEYAPRGEVYKELQKLSKFDEQRTATYITELA 123
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            A+      + +H  I P       +  LKI D 
Sbjct: 124 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 157

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 68  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 120
Query: 135 AAIGVARGIQFLHTGIVP 152
            A+      + +H  I P
Sbjct: 121 NALSYCHSKRVIHRDIKP 138

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW---ISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P G +      +S+    ++ T+   ++
Sbjct: 71  RHPNILRLYG-----YFHDAT--RVYLILEYAPRGEVYKELQKLSKFDEQRTATYITELA 123
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            A+      + +H  I P       +  LKI D 
Sbjct: 124 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 157

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 69  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 121
Query: 135 AAIGVARGIQFLHTGIVP 152
            A+      + +H  I P
Sbjct: 122 NALSYCHSKRVIHRDIKP 139

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 18/153 (11%)
Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKL 77
           A  +F+    +G+G  G +Y  R K   FI A++ L   +++K+         +E+ S L
Sbjct: 3   ALEDFEIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 62
Query: 78  RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAWQSLTWTQRIS 134
           RH +++   G     YF D++  R++LI EY P GT+      +S+    ++ T+   ++
Sbjct: 63  RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 115
Query: 135 AAIGVARGIQFLHTGIVPGVF----SNNLKITD 163
            A+      + +H  I P       +  LKI D
Sbjct: 116 NALSYCHSKRVIHRDIKPENLLLGSAGELKIAD 148

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 13/134 (9%)
Query: 47  NGTFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
            G  +A++ LK       R+ +   I+++  L H H++   G C     +D     + L+
Sbjct: 42  TGEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHIIKYKGCC-----EDQGEKSLQLV 96
Query: 106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL 165
            EYVP G+LR ++       S+   Q +  A  +  G+ +LH+         NL   ++L
Sbjct: 97  MEYVPLGSLRDYLPR----HSIGLAQLLLFAQQICEGMAYLHSQ---HYIHRNLAARNVL 149
Query: 166 LDQNLVAKISSYNL 179
           LD + + KI  + L
Sbjct: 150 LDNDRLVKIGDFGL 163

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 80/179 (44%), Gaps = 17/179 (9%)
Query: 20  EEATNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTR-NFMHHIELI 74
           E    N      +G G  G++  GRLK        +AI+ LK+  +   R +F+    ++
Sbjct: 12  ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 71
Query: 75  SKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRIS 134
            +  H +++   G         +    + ++ E + NG+L S++ +  A    T  Q + 
Sbjct: 72  GQFDHPNIIRLEGVV-------TKSKPVMIVTEXMENGSLDSFLRKHDA--QFTVIQLVG 122
Query: 135 AAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 193
              G+A G+++L      G    +L   +IL++ NLV K+S + L  + E+  +  + T
Sbjct: 123 MLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 178

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 47  NGTFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
            G  +A++ LK       R+ +   I+++  L H H++   G C     +D     + L+
Sbjct: 42  TGEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHIIKYKGCC-----EDQGEKSLQLV 96
Query: 106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL 165
            EYVP G+LR ++       S+   Q +  A  +  G+ +LH          NL   ++L
Sbjct: 97  MEYVPLGSLRDYLPR----HSIGLAQLLLFAQQICEGMAYLHAQ---HYIHRNLAARNVL 149
Query: 166 LDQNLVAKISSYNL 179
           LD + + KI  + L
Sbjct: 150 LDNDRLVKIGDFGL 163

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 85/194 (43%), Gaps = 26/194 (13%)
Query: 14  FSLEELEEATNNF----DTSAF-----MGEGSKGQMYRGRLK----NGTFIAIRCLKMKK 60
           F+ E+  +A   F    D S       +G G  G++  GRLK        +AI+ LK   
Sbjct: 10  FTFEDPNQAVREFAKEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGY 69
Query: 61  SHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS 119
           +   R +F+    ++ +  H +++   G   +C         + +I EY+ NG+L +++ 
Sbjct: 70  TDKQRRDFLSEASIMGQFDHPNIIHLEGVVTKC-------KPVMIITEYMENGSLDAFLR 122
Query: 120 EGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           +       T  Q +    G+  G+++L           +L   +IL++ NLV K+S + +
Sbjct: 123 KNDG--RFTVIQLVGMLRGIGSGMKYLSDM---SAVHRDLAARNILVNSNLVCKVSDFGM 177
Query: 180 PLLAENAEKVGHVT 193
             + E+  +  + T
Sbjct: 178 SRVLEDDPEAAYTT 191

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 90/191 (47%), Gaps = 28/191 (14%)
Query: 4   GALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMK 59
           G LG  + R ++LE       +FD    +G+G  G +Y  R +   FI A++ L   +++
Sbjct: 1   GPLG--SKRQWTLE-------DFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLE 51
Query: 60  KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS 119
           K+         +E+ S LRH +++   G     YF D++  R++LI EY P GT+   + 
Sbjct: 52  KAGVEHQLRREVEIQSHLRHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQ 104
Query: 120 EGHAWQSLTWTQRISAAIG-VARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN 178
           +   +      QR +  I  +A  + + H+     V   ++K  ++LL  N   KI+ + 
Sbjct: 105 KLSRFDE----QRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSNGELKIADFG 157
Query: 179 LPLLAENAEKV 189
             + A ++ + 
Sbjct: 158 WSVHAPSSRRT 168

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 27/172 (15%)
Query: 4   GALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMK 59
           G LG  + R ++LE       +FD    +G+G  G +Y  R +   FI A++ L   +++
Sbjct: 1   GPLG--SKRQWTLE-------DFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLE 51
Query: 60  KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---S 116
           K+         +E+ S LRH +++   G     YF D++  R++LI EY P GT+     
Sbjct: 52  KAGVEHQLRREVEIQSHLRHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQ 104
Query: 117 WISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVF----SNNLKITDI 164
            +S     ++ T+   ++ A+      + +H  I P       +  LKI D 
Sbjct: 105 KLSRFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSNGELKIADF 156

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 32  MGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSAL 86
           +G G  G++  GRLK        +AI+ LK+  +   R +F+    ++ +  H +++   
Sbjct: 30  IGAGEFGEVCSGRLKLPGKRELPVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIHLE 89
Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFL 146
           G         +    + ++ EY+ NG+L +++ +       T  Q +    G++ G+++L
Sbjct: 90  GVV-------TKSKPVMIVTEYMENGSLDTFLKKNDG--QFTVIQLVGMLRGISAGMKYL 140
Query: 147 HTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 193
                 G    +L   +IL++ NLV K+S + L  + E+  +  + T
Sbjct: 141 SDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 184

>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439 Length = 285

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 18/152 (11%)
Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKLRH 79
           ++FD    +G+G  G +Y  R K   FI A++ L   +++K          IE+ S LRH
Sbjct: 15  DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRH 74
Query: 80  CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAW---QSLTWTQRISAA 136
            +++         YF D    RI+L+ E+ P G L   + +   +   +S T+ + ++ A
Sbjct: 75  PNILRMYN-----YFHDR--KRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADA 127
Query: 137 IGVARGIQFLHTGIVPGV----FSNNLKITDI 164
           +      + +H  I P      +   LKI D 
Sbjct: 128 LHYCHERKVIHRDIKPENLLMGYKGELKIADF 159

>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 18/152 (11%)
Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKLRH 79
           ++FD    +G+G  G +Y  R K   FI A++ L   +++K          IE+ S LRH
Sbjct: 14  DDFDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRH 73
Query: 80  CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAW---QSLTWTQRISAA 136
            +++         YF D    RI+L+ E+ P G L   + +   +   +S T+ + ++ A
Sbjct: 74  PNILRMYN-----YFHDR--KRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADA 126
Query: 137 IGVARGIQFLHTGIVPGV----FSNNLKITDI 164
           +      + +H  I P      +   LKI D 
Sbjct: 127 LHYCHERKVIHRDIKPENLLMGYKGELKIADF 158

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 26/186 (13%)
Query: 14  FSLEELEEATNNF----DTSAF-----MGEGSKGQMYRGRLK----NGTFIAIRCLKMKK 60
           F+ E+  EA   F    D S       +G G  G++  G LK       F+AI+ LK   
Sbjct: 14  FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 73
Query: 61  SHSTR-NFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS 119
           +   R +F+    ++ +  H +++   G         +  + + +I E++ NG+L S++ 
Sbjct: 74  TEKQRRDFLSEASIMGQFDHPNVIHLEGVV-------TKSTPVMIITEFMENGSLDSFLR 126
Query: 120 EGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           +       T  Q +    G+A G+++L           +L   +IL++ NLV K+S + L
Sbjct: 127 QNDG--QFTVIQLVGMLRGIAAGMKYLADM---NYVHRDLAARNILVNSNLVCKVSDFGL 181
Query: 180 PLLAEN 185
               E+
Sbjct: 182 SRFLED 187

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 32  MGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSAL 86
           +G G  G++  GRLK        +AI+ LK   +   R +F+    ++ +  H +++   
Sbjct: 22  IGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLE 81
Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFL 146
           G   +C         + +I EY+ NG+L +++ +       T  Q +    G+  G+++L
Sbjct: 82  GVVTKC-------KPVMIITEYMENGSLDAFLRKNDG--RFTVIQLVGMLRGIGSGMKYL 132
Query: 147 HTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 193
                      +L   +IL++ NLV K+S + +  + E+  +  + T
Sbjct: 133 SDM---SYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTT 176

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 18/168 (10%)
Query: 32  MGEGSKGQMYRGRLKNGT-----FIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSA 85
           +G G  G++Y+G LK  +      +AI+ LK   +   R +F+    ++ +  H +++  
Sbjct: 52  IGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRL 111
Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQF 145
            G         S    + +I EY+ NG L  ++ E       +  Q +    G+A G+++
Sbjct: 112 EGVI-------SKYKPMMIITEYMENGALDKFLREKDG--EFSVLQLVGMLRGIAAGMKY 162
Query: 146 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 193
           L           +L   +IL++ NLV K+S + L  + E+  +  + T
Sbjct: 163 LANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTT 207

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 32  MGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSAL 86
           +G G  G++  GRLK        +AI+ LK   +   R +F+    ++ +  H +++   
Sbjct: 16  IGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLE 75
Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFL 146
           G   +C         + +I EY+ NG+L +++ +       T  Q +    G+  G+++L
Sbjct: 76  GVVTKC-------KPVMIITEYMENGSLDAFLRKNDG--RFTVIQLVGMLRGIGSGMKYL 126
Query: 147 HTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 193
                      +L   +IL++ NLV K+S + +  + E+  +  + T
Sbjct: 127 SDM---SYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTT 170

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 11/153 (7%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 42  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 96
Query: 108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD 167
           Y+P G+LR ++ + HA + +   + +     + +G+++L T         +L   +IL++
Sbjct: 97  YLPYGSLRDYL-QAHA-ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVE 151
Query: 168 QNLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 199
                KI  + L  +L ++ E      P    I
Sbjct: 152 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 184

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 23/171 (13%)
Query: 31  FMGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSA 85
            +G G  G++  GRL+        +AI+ LK   +    R+F+    ++ +  H +++  
Sbjct: 56  IIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRL 115
Query: 86  LGHCFECYFDDSSVSR---IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARG 142
            G           V+R     ++ EY+ NG+L +++   H  Q  T  Q +    GV  G
Sbjct: 116 EG----------VVTRGRLAMIVTEYMENGSLDTFLRT-HDGQ-FTIMQLVGMLRGVGAG 163
Query: 143 IQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 193
           +++L      G    +L   ++L+D NLV K+S + L  + E+     + T
Sbjct: 164 MRYLSD---LGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTT 211

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 13/134 (9%)
Query: 47  NGTFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
            G  +A++ LK       R+ +   IE++  L H H+V   G C     +D     + L+
Sbjct: 37  TGEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKYKGCC-----EDQGEKSVQLV 91
Query: 106 FEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL 165
            EYVP G+LR ++        +   Q +  A  +  G+ +LH           L   ++L
Sbjct: 92  MEYVPLGSLRDYLPR----HCVGLAQLLLFAQQICEGMAYLHAQ---HYIHRALAARNVL 144
Query: 166 LDQNLVAKISSYNL 179
           LD + + KI  + L
Sbjct: 145 LDNDRLVKIGDFGL 158

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 23/170 (13%)
Query: 32  MGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSAL 86
           +G G  G++  GRLK        +AI+ LK+  +   R +F+    ++ +  H ++V   
Sbjct: 51  IGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNVVHLE 110
Query: 87  GHCFECYFDDSSVSR---IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGI 143
           G           V+R   + ++ E++ NG L +++ + H  Q  T  Q +    G+A G+
Sbjct: 111 G----------VVTRGKPVMIVIEFMENGALDAFLRK-HDGQ-FTVIQLVGMLRGIAAGM 158
Query: 144 QFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 193
           ++L      G    +L   +IL++ NLV K+S + L  + E+  +  + T
Sbjct: 159 RYLADM---GYVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTT 205

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 19/137 (13%)
Query: 47  NGTFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLI 105
            G  +A++ LK       R+ +   IE++  L H H+V   G C     +D     + L+
Sbjct: 36  TGEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKYKGCC-----EDQGEKSVQLV 90
Query: 106 FEYVPNGTLRSWISE---GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKIT 162
            EYVP G+LR ++     G A Q L + Q+I   +       ++H           L   
Sbjct: 91  MEYVPLGSLRDYLPRHCVGLA-QLLLFAQQICEGMAYLHAQHYIHRA---------LAAR 140
Query: 163 DILLDQNLVAKISSYNL 179
           ++LLD + + KI  + L
Sbjct: 141 NVLLDNDRLVKIGDFGL 157

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G   N T +A++ LK   + S + F+    L+  L+H  LV        
Sbjct: 21  LGAGQFGEVWMGYYNNSTKVAVKTLK-PGTMSVQAFLEEANLMKTLQHDKLV-------R 72
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
            Y   +    I++I EY+  G+L  ++      + L   + I  +  +A G+ ++     
Sbjct: 73  LYAVVTREEPIYIITEYMAKGSLLDFLKSDEGGKVLL-PKLIDFSAQIAEGMAYIERK-- 129
Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  ++L+ ++L+ KI+ + L  + E+ E
Sbjct: 130 -NYIHRDLRAANVLVSESLMCKIADFGLARVIEDNE 164

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 11/141 (7%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 40  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 94
Query: 108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD 167
           Y+P G+LR ++ +    + +   + +     + +G+++L T         NL   +IL++
Sbjct: 95  YLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRNLATRNILVE 149
Query: 168 QNLVAKISSYNL-PLLAENAE 187
                KI  + L  +L ++ E
Sbjct: 150 NENRVKIGDFGLTKVLPQDKE 170

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 15/162 (9%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G +  G+ K    +A++ +K + S S   F    + + KL H  LV   G C +
Sbjct: 16  LGSGQFGVVKLGKWKGQYDVAVKMIK-EGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSK 74
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWI-SEGHAWQSLTWTQRISAAIGVARGIQFLHTGI 150
            Y        I+++ EY+ NG L +++ S G   + L  +Q +     V  G+ FL +  
Sbjct: 75  EY-------PIYIVTEYISNGCLLNYLRSHG---KGLEPSQLLEMCYDVCEGMAFLESH- 123
Query: 151 VPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHV 192
                  +L   + L+D++L  K+S + +     + + V  V
Sbjct: 124 --QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSV 163

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 17/168 (10%)
Query: 31  FMGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSA 85
            +G G  G++  GRL+        +AI+ LK   +    R+F+    ++ +  H +++  
Sbjct: 56  IIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRL 115
Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQF 145
            G                ++ EY+ NG+L +++   H  Q  T  Q +    GV  G+++
Sbjct: 116 EGVVTRGRL-------AMIVTEYMENGSLDTFLRT-HDGQ-FTIMQLVGMLRGVGAGMRY 166
Query: 146 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 193
           L      G    +L   ++L+D NLV K+S + L  + E+       T
Sbjct: 167 LSD---LGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAXTT 211

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G+++ G   N T +A++ LK   + S + F+    L+  L+H  LV        
Sbjct: 20  LGAGQFGEVWMGYYNNSTKVAVKTLK-PGTMSVQAFLEEANLMKTLQHDKLV-------R 71
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
            Y   +    I++I E++  G+L  ++      + L   + I  +  +A G+ ++     
Sbjct: 72  LYAVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLL-PKLIDFSAQIAEGMAYIERK-- 128
Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                 +L+  ++L+ ++L+ KI+ + L  + E+ E
Sbjct: 129 -NYIHRDLRAANVLVSESLMCKIADFGLARVIEDNE 163

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 28/166 (16%)
Query: 32  MGEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSA 85
           +GEG+ G+++     N         +A++ LK     + ++F    EL++ L+H H+V  
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 108
Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI------------SEGHAWQSLTWTQRI 133
            G C E          + ++FEY+ +G L  ++             E  A   L   Q +
Sbjct: 109 FGVCTEG-------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLL 161
Query: 134 SAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           + A  VA G+ +L  G+       +L   + L+ Q LV KI  + +
Sbjct: 162 AVASQVAAGMVYL-AGL--HFVHRDLATRNCLVGQGLVVKIGDFGM 204

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G ++ G   N   +AI+ +K + S S  +F+   E++ KL H  LV   G C E
Sbjct: 35  IGSGQFGLVHLGYWLNKDKVAIKTIK-EGSMSEDDFIEEAEVMMKLSHPKLVQLYGVCLE 93
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQR--------ISAAIGVARGI 143
                   + I L+FE++ +G L  ++           TQR        +   + V  G+
Sbjct: 94  -------QAPICLVFEFMEHGCLSDYLR----------TQRGLFAAETLLGMCLDVCEGM 136
Query: 144 QFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
            +L       V   +L   + L+ +N V K+S + +
Sbjct: 137 AYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGM 169

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 32  MGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSAL 86
           +G G  G++ RGRLK      + +AI+ LK   +    R F+    ++ +  H +++   
Sbjct: 22  IGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIRLE 81
Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFL 146
           G         ++   + ++ E++ NG L S++         T  Q +    G+A G+++L
Sbjct: 82  GVV-------TNSMPVMILTEFMENGALDSFLRLNDG--QFTVIQLVGMLRGIASGMRYL 132
Query: 147 HTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP-LLAENAEKVGHVTPYSGSI 199
                      +L   +IL++ NLV K+S + L   L EN+    + +   G I
Sbjct: 133 AEM---SYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTYTSSLGGKI 183

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 28/166 (16%)
Query: 32  MGEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSA 85
           +GEG+ G+++     N         +A++ LK     + ++F    EL++ L+H H+V  
Sbjct: 20  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 79
Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI------------SEGHAWQSLTWTQRI 133
            G C E          + ++FEY+ +G L  ++             E  A   L   Q +
Sbjct: 80  FGVCTEG-------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLL 132
Query: 134 SAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           + A  VA G+ +L  G+       +L   + L+ Q LV KI  + +
Sbjct: 133 AVASQVAAGMVYL-AGL--HFVHRDLATRNCLVGQGLVVKIGDFGM 175

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 28/166 (16%)
Query: 32  MGEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSA 85
           +GEG+ G+++     N         +A++ LK     + ++F    EL++ L+H H+V  
Sbjct: 26  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 85
Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI------------SEGHAWQSLTWTQRI 133
            G C E          + ++FEY+ +G L  ++             E  A   L   Q +
Sbjct: 86  FGVCTEG-------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLL 138
Query: 134 SAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           + A  VA G+ +L  G+       +L   + L+ Q LV KI  + +
Sbjct: 139 AVASQVAAGMVYL-AGL--HFVHRDLATRNCLVGQGLVVKIGDFGM 181

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 23/194 (11%)
Query: 17  EELEEATNNFDTS-----AFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSH-STRN 66
           E + E     D S       +G G  G++ RGRLK      + +AI+ LK   +    R 
Sbjct: 4   EAVREFAKEIDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRRE 63
Query: 67  FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQS 126
           F+    ++ +  H +++   G         ++   + ++ E++ NG L S++        
Sbjct: 64  FLSEASIMGQFEHPNIIRLEGVV-------TNSMPVMILTEFMENGALDSFLRLNDG--Q 114
Query: 127 LTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP-LLAEN 185
            T  Q +    G+A G+++L           +L   +IL++ NLV K+S + L   L EN
Sbjct: 115 FTVIQLVGMLRGIASGMRYLAEM---SYVHRDLAARNILVNSNLVCKVSDFGLSRFLEEN 171
Query: 186 AEKVGHVTPYSGSI 199
           +      +   G I
Sbjct: 172 SSDPTETSSLGGKI 185

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 42  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 96
Query: 108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD 167
           Y+P G+LR ++ +    + +   + +     + +G+++L T         +L   +IL++
Sbjct: 97  YLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVE 151
Query: 168 QNLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 199
                KI  + L  +L ++ E      P    I
Sbjct: 152 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 184

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 45  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 99
Query: 108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD 167
           Y+P G+LR ++ +    + +   + +     + +G+++L T         +L   +IL++
Sbjct: 100 YLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVE 154
Query: 168 QNLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 199
                KI  + L  +L ++ E      P    I
Sbjct: 155 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 187

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 46  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 100
Query: 108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD 167
           Y+P G+LR ++ +    + +   + +     + +G+++L T         +L   +IL++
Sbjct: 101 YLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVE 155
Query: 168 QNLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 199
                KI  + L  +L ++ E      P    I
Sbjct: 156 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 188

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 44  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 98
Query: 108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD 167
           Y+P G+LR ++ +    + +   + +     + +G+++L T         +L   +IL++
Sbjct: 99  YLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVE 153
Query: 168 QNLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 199
                KI  + L  +L ++ E      P    I
Sbjct: 154 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 186

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 43  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 97
Query: 108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD 167
           Y+P G+LR ++ +    + +   + +     + +G+++L T         +L   +IL++
Sbjct: 98  YLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVE 152
Query: 168 QNLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 199
                KI  + L  +L ++ E      P    I
Sbjct: 153 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 185

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 39  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 93
Query: 108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD 167
           Y+P G+LR ++ +    + +   + +     + +G+++L T         +L   +IL++
Sbjct: 94  YLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVE 148
Query: 168 QNLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 199
                KI  + L  +L ++ E      P    I
Sbjct: 149 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 181

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 70  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 124
Query: 108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD 167
           Y+P G+LR ++ +    + +   + +     + +G+++L T         +L   +IL++
Sbjct: 125 YLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVE 179
Query: 168 QNLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 199
                KI  + L  +L ++ E      P    I
Sbjct: 180 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 212

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 38  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 92
Query: 108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD 167
           Y+P G+LR ++ +    + +   + +     + +G+++L T         +L   +IL++
Sbjct: 93  YLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVE 147
Query: 168 QNLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 199
                KI  + L  +L ++ E      P    I
Sbjct: 148 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 180

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 37  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 91
Query: 108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD 167
           Y+P G+LR ++ +    + +   + +     + +G+++L T         +L   +IL++
Sbjct: 92  YLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVE 146
Query: 168 QNLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 199
                KI  + L  +L ++ E      P    I
Sbjct: 147 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 179

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 11/141 (7%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 57  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 111
Query: 108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD 167
           Y+P G+LR ++ +    + +   + +     + +G+++L T         +L   +IL++
Sbjct: 112 YLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVE 166
Query: 168 QNLVAKISSYNL-PLLAENAE 187
                KI  + L  +L ++ E
Sbjct: 167 NENRVKIGDFGLTKVLPQDKE 187

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 39  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 93
Query: 108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD 167
           Y+P G+LR ++ +    + +   + +     + +G+++L T         +L   +IL++
Sbjct: 94  YLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVE 148
Query: 168 QNLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 199
                KI  + L  +L ++ E      P    I
Sbjct: 149 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 181

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 11/141 (7%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 39  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 93
Query: 108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD 167
           Y+P G+LR ++ +    + +   + +     + +G+++L T         +L   +IL++
Sbjct: 94  YLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVE 148
Query: 168 QNLVAKISSYNL-PLLAENAE 187
                KI  + L  +L ++ E
Sbjct: 149 NENRVKIGDFGLTKVLPQDKE 169

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 11/141 (7%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 57  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 111
Query: 108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD 167
           Y+P G+LR ++ +    + +   + +     + +G+++L T         +L   +IL++
Sbjct: 112 YLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVE 166
Query: 168 QNLVAKISSYNL-PLLAENAE 187
                KI  + L  +L ++ E
Sbjct: 167 NENRVKIGDFGLTKVLPQDKE 187

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 32/167 (19%)
Query: 25  NFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV 83
           +F+    +G+GS G+++    K    F AI+ LK             + L+     C +V
Sbjct: 19  DFELHKMLGKGSFGKVFLAEFKKTNQFFAIKALK-----------KDVVLMDDDVECTMV 67
Query: 84  SA-----------LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQR 132
                        L H F C F   +   +F + EY+  G L   I   H +     ++ 
Sbjct: 68  EKRVLSLAWEHPFLTHMF-CTF--QTKENLFFVMEYLNGGDLMYHIQSCHKFD---LSRA 121
Query: 133 ISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
              A  +  G+QFLH+    G+   +LK+ +ILLD++   KI+ + +
Sbjct: 122 TFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGM 165

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 24  NNFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMK---KSHSTRNFMHHIELISKLRH 79
           +NF+    +G+GS G++   R+K  G   A++ LK     +       M    ++S  R+
Sbjct: 23  DNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARN 82
Query: 80  CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGV 139
              ++ L  CF+      +  R+F + E+V  G L   I +   +       R  AA  +
Sbjct: 83  HPFLTQLFCCFQ------TPDRLFFVMEFVNGGDLMFHIQKSRRFDEAR--ARFYAA-EI 133
Query: 140 ARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
              + FLH     G+   +LK+ ++LLD     K++ + +
Sbjct: 134 ISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGM 170

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 25/171 (14%)
Query: 18  ELEEATNNFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKM-----KKSHSTRNFMHHI 71
           +++     ++   F+GEG    +Y+ R KN    +AI+ +K+      K    R  +  I
Sbjct: 4   DVKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREI 63
Query: 72  ELISKLRHCH---LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLT 128
           +L+ +L H +   L+ A GH           S I L+F+++    L   I +      LT
Sbjct: 64  KLLQELSHPNIIGLLDAFGH----------KSNISLVFDFM-ETDLEVIIKDNSL--VLT 110
Query: 129 WTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
            +   +  +   +G+++LH      +   +LK  ++LLD+N V K++ + L
Sbjct: 111 PSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGL 158

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G ++ G   N   +AI+ ++ + + S  +F+   E++ KL H  LV   G C E
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 73
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQR--------ISAAIGVARGI 143
                   + I L+FE++ +G L  ++           TQR        +   + V  G+
Sbjct: 74  -------QAPICLVFEFMEHGCLSDYLR----------TQRGLFAAETLLGMCLDVCEGM 116
Query: 144 QFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
            +L       V   +L   + L+ +N V K+S + +
Sbjct: 117 AYLEEA---SVIHRDLAARNCLVGENQVIKVSDFGM 149

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 70/152 (46%), Gaps = 13/152 (8%)
Query: 32  MGEGSKGQMYR-GRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCF 90
           +G+G  GQ  +    + G  + ++ L      + R F+  ++++  L H +++  +G  +
Sbjct: 18  LGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLY 77
Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGI 150
           +         R+  I EY+  GTLR  I    +     W+QR+S A  +A G+ +LH+  
Sbjct: 78  K-------DKRLNFITEYIKGGTLRGIIKSMDS--QYPWSQRVSFAKDIASGMAYLHSM- 127
Query: 151 VPGVFSNNLKITDILLDQNLVAKISSYNLPLL 182
              +   +L   + L+ +N    ++ + L  L
Sbjct: 128 --NIIHRDLNSHNCLVRENKNVVVADFGLARL 157

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G ++ G   N   +AI+ ++ + + S  +F+   E++ KL H  LV   G C E
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 73
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQR--------ISAAIGVARGI 143
                   + I L+FE++ +G L  ++           TQR        +   + V  G+
Sbjct: 74  -------QAPICLVFEFMEHGCLSDYLR----------TQRGLFAAETLLGMCLDVCEGM 116
Query: 144 QFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
            +L       V   +L   + L+ +N V K+S + +
Sbjct: 117 AYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGM 149

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 21/165 (12%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G +  G+ +    +AI+ +K + S S   F+   +++  L H  LV   G C  
Sbjct: 32  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC-- 88
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISE-GHAWQS---LTWTQRISAAIGVARGIQFLH 147
                +    IF+I EY+ NG L +++ E  H +Q+   L   + +  A+      QFLH
Sbjct: 89  -----TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLH 143
Query: 148 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHV 192
                     +L   + L++   V K+S + L     + E+   V
Sbjct: 144 ---------RDLAARNCLVNDQGVVKVSDFGLSRYVLDDEETSSV 179

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G ++ G   N   +AI+ ++ + + S  +F+   E++ KL H  LV   G C E
Sbjct: 13  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 71
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQR--------ISAAIGVARGI 143
                   + I L+FE++ +G L  ++           TQR        +   + V  G+
Sbjct: 72  -------QAPICLVFEFMEHGCLSDYLR----------TQRGLFAAETLLGMCLDVCEGM 114
Query: 144 QFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
            +L       V   +L   + L+ +N V K+S + +
Sbjct: 115 AYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGM 147

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G ++ G   N   +AI+ ++ + + S  +F+   E++ KL H  LV   G C E
Sbjct: 18  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 76
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQR--------ISAAIGVARGI 143
                   + I L+FE++ +G L  ++           TQR        +   + V  G+
Sbjct: 77  -------QAPICLVFEFMEHGCLSDYLR----------TQRGLFAAETLLGMCLDVCEGM 119
Query: 144 QFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
            +L       V   +L   + L+ +N V K+S + +
Sbjct: 120 AYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGM 152

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/178 (19%), Positives = 78/178 (43%), Gaps = 13/178 (7%)
Query: 15  SLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTF-IAIRCLKMKKSHSTRNFMHHIEL 73
           S+++ E    +      +G G  G++Y G  K  +  +A++ LK + +     F+    +
Sbjct: 23  SMDKWEMERTDITMKHKLGGGQYGEVYVGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAV 81
Query: 74  ISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRI 133
           + +++H +LV  LG C       +     +++ EY+P G L  ++ E +  + +T    +
Sbjct: 82  MKEIKHPNLVQLLGVC-------TLEPPFYIVTEYMPYGNLLDYLRECNR-EEVTAVVLL 133
Query: 134 SAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGH 191
             A  ++  +++L           +L   + L+ +N V K++ + L  L        H
Sbjct: 134 YMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHVVKVADFGLSRLMTGDTYTAH 188

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 17/159 (10%)
Query: 32  MGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSAL 86
           +G G  G++  G LK       F+AI+ LK   +   R +F+    ++ +  H +++   
Sbjct: 15  IGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLE 74
Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFL 146
           G         +  + + +I E++ NG+L S++ +       T  Q +    G+A G+++L
Sbjct: 75  GVV-------TKSTPVMIITEFMENGSLDSFLRQNDG--QFTVIQLVGMLRGIAAGMKYL 125
Query: 147 HTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN 185
                       L   +IL++ NLV K+S + L    E+
Sbjct: 126 ADM---NYVHRALAARNILVNSNLVCKVSDFGLSRFLED 161

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 48  GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE 107
           G  +A++ L+       R+F   IE++  L+H ++V   G C+      +    + LI E
Sbjct: 42  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 96
Query: 108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD 167
           ++P G+LR ++ +    + +   + +     + +G+++L T         +L   +IL++
Sbjct: 97  FLPYGSLREYLQKHK--ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVE 151
Query: 168 QNLVAKISSYNL-PLLAENAEKVGHVTPYSGSI 199
                KI  + L  +L ++ E      P    I
Sbjct: 152 NENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI 184

>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNGTFI-AIRCL---KMKKSHSTRNFMHHIELISKLRH 79
           ++F+    +G+G  G +Y  R K   FI A++ L   +++K          IE+ + L H
Sbjct: 23  DDFEIGRPLGKGKFGNVYLAREKKSHFIVALKVLFKSQIEKEGVEHQLRREIEIQAHLHH 82
Query: 80  CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAW---QSLTWTQRISAA 136
            +++         YF D    RI+LI EY P G L   + +   +   ++ T  + ++ A
Sbjct: 83  PNILRLYN-----YFYDRR--RIYLILEYAPRGELYKELQKSCTFDEQRTATIMEELADA 135
Query: 137 IGVARGIQFLHTGIVP 152
           +    G + +H  I P
Sbjct: 136 LMYCHGKKVIHRDIKP 151

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 21/152 (13%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G +  G+ +    +AI+ +K + S S   F+   +++  L H  LV   G C  
Sbjct: 32  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC-- 88
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISE-GHAWQS---LTWTQRISAAIGVARGIQFLH 147
                +    IF+I EY+ NG L +++ E  H +Q+   L   + +  A+      QFLH
Sbjct: 89  -----TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLH 143
Query: 148 TGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
                     +L   + L++   V K+S + L
Sbjct: 144 ---------RDLAARNCLVNDQGVVKVSDFGL 166

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 21/152 (13%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G +  G+ +    +AI+ +K + S S   F+   +++  L H  LV   G C  
Sbjct: 12  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC-- 68
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISE-GHAWQS---LTWTQRISAAIGVARGIQFLH 147
                +    IF+I EY+ NG L +++ E  H +Q+   L   + +  A+      QFLH
Sbjct: 69  -----TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLH 123
Query: 148 TGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
                     +L   + L++   V K+S + L
Sbjct: 124 ---------RDLAARNCLVNDQGVVKVSDFGL 146

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 21/152 (13%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G +  G+ +    +AI+ +K + S S   F+   +++  L H  LV   G C  
Sbjct: 23  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC-- 79
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISE-GHAWQS---LTWTQRISAAIGVARGIQFLH 147
                +    IF+I EY+ NG L +++ E  H +Q+   L   + +  A+      QFLH
Sbjct: 80  -----TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLH 134
Query: 148 TGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
                     +L   + L++   V K+S + L
Sbjct: 135 ---------RDLAARNCLVNDQGVVKVSDFGL 157

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 21/152 (13%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G +  G+ +    +AI+ +K + S S   F+   +++  L H  LV   G C  
Sbjct: 17  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC-- 73
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISE-GHAWQS---LTWTQRISAAIGVARGIQFLH 147
                +    IF+I EY+ NG L +++ E  H +Q+   L   + +  A+      QFLH
Sbjct: 74  -----TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLH 128
Query: 148 TGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
                     +L   + L++   V K+S + L
Sbjct: 129 ---------RDLAARNCLVNDQGVVKVSDFGL 151

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 21/152 (13%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G +  G+ +    +AI+ +K + S S   F+   +++  L H  LV   G C  
Sbjct: 17  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC-- 73
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISE-GHAWQS---LTWTQRISAAIGVARGIQFLH 147
                +    IF+I EY+ NG L +++ E  H +Q+   L   + +  A+      QFLH
Sbjct: 74  -----TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLH 128
Query: 148 TGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
                     +L   + L++   V K+S + L
Sbjct: 129 ---------RDLAARNCLVNDQGVVKVSDFGL 151

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 21/152 (13%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G +  G+ +    +AI+ +K + S S   F+   +++  L H  LV   G C  
Sbjct: 16  LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC-- 72
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISE-GHAWQS---LTWTQRISAAIGVARGIQFLH 147
                +    IF+I EY+ NG L +++ E  H +Q+   L   + +  A+      QFLH
Sbjct: 73  -----TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLH 127
Query: 148 TGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
                     +L   + L++   V K+S + L
Sbjct: 128 ---------RDLAARNCLVNDQGVVKVSDFGL 150

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 24/175 (13%)
Query: 17  EELEEATNNFDTSAF--------MGEGSKGQ-MYRGRLKNGTFIAIRCLKMK---KSHST 64
           E+ ++ +NN D            +G+GS G+ M   R       AI+ LK     +    
Sbjct: 4   EDRKQPSNNLDRVKLTDFNFLMVLGKGSFGKVMLADRKGTEELYAIKILKKDVVIQDDDV 63
Query: 65  RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAW 124
              M    +++ L     ++ L  CF+      +V R++ + EYV  G L   I +   +
Sbjct: 64  ECTMVEKRVLALLDKPPFLTQLHSCFQ------TVDRLYFVMEYVNGGDLMYHIQQVGKF 117
Query: 125 QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           +     Q +  A  ++ G+ FLH     G+   +LK+ +++LD     KI+ + +
Sbjct: 118 KE---PQAVFYAAEISIGLFFLHKR---GIIYRDLKLDNVMLDSEGHIKIADFGM 166

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 73/167 (43%), Gaps = 29/167 (17%)
Query: 32  MGEGSKGQMYRGRL------KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSA 85
           +GEG+ G+++          K+   +A++ LK     + ++F    EL++ L+H H+V  
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82
Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS----------EGHAWQS---LTWTQR 132
            G C            + ++FEY+ +G L  ++           +G   Q+   L  +Q 
Sbjct: 83  YGVC-------GDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQM 135
Query: 133 ISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           +  A  +A G+ +L +         +L   + L+  NL+ KI  + +
Sbjct: 136 LHIASQIASGMVYLAS---QHFVHRDLATRNCLVGANLLVKIGDFGM 179

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 32/167 (19%)
Query: 25  NFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV 83
           +F     +G+GS G+++    K    F AI+ LK             + L+     C +V
Sbjct: 18  DFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALK-----------KDVVLMDDDVECTMV 66
Query: 84  SA-----------LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQR 132
                        L H F C F   +   +F + EY+  G L   I   H +     ++ 
Sbjct: 67  EKRVLSLAWEHPFLTHMF-CTF--QTKENLFFVMEYLNGGDLMYHIQSCHKFD---LSRA 120
Query: 133 ISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
              A  +  G+QFLH+    G+   +LK+ +ILLD++   KI+ + +
Sbjct: 121 TFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGM 164

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 38/203 (18%)
Query: 5   ALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRG---RLKNG---TFIAIRCLKM 58
           +L + A++     + E    N      +GEG  G++ +     LK     T +A++ LK 
Sbjct: 4   SLSVDAFKILEDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKE 63
Query: 59  KKSHST-RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW 117
             S S  R+ +    ++ ++ H H++   G C       S    + LI EY   G+LR +
Sbjct: 64  NASPSELRDLLSEFNVLKQVNHPHVIKLYGAC-------SQDGPLLLIVEYAKYGSLRGF 116
Query: 118 ISEGHA---------------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFS 156
           + E                         ++LT    IS A  +++G+Q+L       +  
Sbjct: 117 LRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---SLVH 173
Query: 157 NNLKITDILLDQNLVAKISSYNL 179
            +L   +IL+ +    KIS + L
Sbjct: 174 RDLAARNILVAEGRKMKISDFGL 196

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/178 (19%), Positives = 77/178 (43%), Gaps = 13/178 (7%)
Query: 15  SLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTF-IAIRCLKMKKSHSTRNFMHHIEL 73
           SL++ E    +      +G G  G++Y G  K  +  +A++ LK + +     F+    +
Sbjct: 2   SLDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAV 60
Query: 74  ISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRI 133
           + +++H +LV  LG C       +     ++I E++  G L  ++ E +  Q ++    +
Sbjct: 61  MKEIKHPNLVQLLGVC-------TREPPFYIIIEFMTYGNLLDYLRECNR-QEVSAVVLL 112
Query: 134 SAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGH 191
             A  ++  +++L           +L   + L+ +N + K++ + L  L        H
Sbjct: 113 YMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAH 167

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 38/203 (18%)
Query: 5   ALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRG---RLKNG---TFIAIRCLKM 58
           +L + A++     + E    N      +GEG  G++ +     LK     T +A++ LK 
Sbjct: 4   SLSVDAFKILEDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKE 63
Query: 59  KKSHST-RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW 117
             S S  R+ +    ++ ++ H H++   G C       S    + LI EY   G+LR +
Sbjct: 64  NASPSELRDLLSEFNVLKQVNHPHVIKLYGAC-------SQDGPLLLIVEYAKYGSLRGF 116
Query: 118 ISEGHA---------------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFS 156
           + E                         ++LT    IS A  +++G+Q+L       +  
Sbjct: 117 LRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVH 173
Query: 157 NNLKITDILLDQNLVAKISSYNL 179
            +L   +IL+ +    KIS + L
Sbjct: 174 RDLAARNILVAEGRKMKISDFGL 196

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 38/203 (18%)
Query: 5   ALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRG---RLKNG---TFIAIRCLKM 58
           +L + A++     + E    N      +GEG  G++ +     LK     T +A++ LK 
Sbjct: 4   SLSVDAFKILEDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKE 63
Query: 59  KKSHST-RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW 117
             S S  R+ +    ++ ++ H H++   G C       S    + LI EY   G+LR +
Sbjct: 64  NASPSELRDLLSEFNVLKQVNHPHVIKLYGAC-------SQDGPLLLIVEYAKYGSLRGF 116
Query: 118 ISEGHA---------------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFS 156
           + E                         ++LT    IS A  +++G+Q+L       +  
Sbjct: 117 LRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVH 173
Query: 157 NNLKITDILLDQNLVAKISSYNL 179
            +L   +IL+ +    KIS + L
Sbjct: 174 RDLAARNILVAEGRKMKISDFGL 196

>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Length = 284

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 75/166 (45%), Gaps = 20/166 (12%)
Query: 25  NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV 83
           +F     +G G  GQ+++ + + +G    I+ +K     + R     ++ ++KL H ++V
Sbjct: 12  DFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAER----EVKALAKLDHVNIV 67
Query: 84  SALGHCFECY-FDDSSVSR---------IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRI 133
              G C++ + +D  + S+         +F+  E+   GTL  WI E    + L     +
Sbjct: 68  HYNG-CWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWI-EKRRGEKLDKVLAL 125
Query: 134 SAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
                + +G+ ++H+     + + +LK ++I L      KI  + L
Sbjct: 126 ELFEQITKGVDYIHS---KKLINRDLKPSNIFLVDTKQVKIGDFGL 168

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           +G G  G ++ G   N   +AI+ ++ + + S  +F+   E++ KL H  LV   G C E
Sbjct: 16  IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 74
Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQR--------ISAAIGVARGI 143
                   + I L+ E++ +G L  ++           TQR        +   + V  G+
Sbjct: 75  -------QAPICLVTEFMEHGCLSDYLR----------TQRGLFAAETLLGMCLDVCEGM 117
Query: 144 QFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
            +L       V   +L   + L+ +N V K+S + +
Sbjct: 118 AYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGM 150

>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating Kinase 1 (Ask1) With Imidazopyridine Inhibitor Length = 269

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 23/146 (15%)
Query: 32  MGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCF 90
           +G+G+ G +Y GR L N   IAI+ +  + S  ++     I L   L+H ++V  LG   
Sbjct: 16  LGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGS-- 73
Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLT--------WTQRISAAIGVARG 142
              F ++   +IF+  E VP G+L + +     W  L         +T++I   +     
Sbjct: 74  ---FSENGFIKIFM--EQVPGGSLSALLRS--KWGPLKDNEQTIGFYTKQILEGLKYLHD 126
Query: 143 IQFLHTGI-----VPGVFSNNLKITD 163
            Q +H  I     +   +S  LKI+D
Sbjct: 127 NQIVHRDIKGDNVLINTYSGVLKISD 152

>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase Kinase 5 Length = 295

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 23/146 (15%)
Query: 32  MGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCF 90
           +G+G+ G +Y GR L N   IAI+ +  + S  ++     I L   L+H ++V  LG   
Sbjct: 30  LGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGS-- 87
Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLT--------WTQRISAAIGVARG 142
              F ++   +IF+  E VP G+L + +     W  L         +T++I   +     
Sbjct: 88  ---FSENGFIKIFM--EQVPGGSLSALLR--SKWGPLKDNEQTIGFYTKQILEGLKYLHD 140
Query: 143 IQFLHTGI-----VPGVFSNNLKITD 163
            Q +H  I     +   +S  LKI+D
Sbjct: 141 NQIVHRDIKGDNVLINTYSGVLKISD 166

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	206
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	8e-50
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	7e-43
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	4e-36
3soc_A	322	Activin receptor type-2A; structural genomics cons	8e-29
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	3e-24
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	8e-21
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	3e-20
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	6e-20
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	2e-19
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	1e-17
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	2e-17
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	3e-17
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	4e-17
3q4u_A	301	Activin receptor type-1; structural genomics conso	5e-17
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	9e-16
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	4e-15
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	5e-15
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	3e-14
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	4e-13
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	6e-13
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	1e-12
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	1e-12
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	1e-12
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	2e-12
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-12
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	3e-12
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	3e-12
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	4e-12
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	4e-12
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	5e-12
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	5e-12
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	5e-12
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	5e-12
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	5e-12
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	9e-12
4aoj_A	329	High affinity nerve growth factor receptor; transf	1e-11
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	2e-11
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	2e-11
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	3e-11
3pls_A	298	Macrophage-stimulating protein receptor; protein k	3e-11
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	4e-11
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	5e-11
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	8e-11
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	1e-10
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	1e-10
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	1e-10
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-10
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	2e-10
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	2e-10
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	3e-10
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	3e-10
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	3e-10
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	4e-10
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	4e-10
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	4e-10
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	4e-10
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	6e-10
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	6e-10
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	7e-10
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	7e-10
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	8e-10
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	8e-10
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	1e-09
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	1e-09
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	1e-09
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	2e-09
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	2e-09
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	2e-09
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	4e-09
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	5e-09
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	5e-09
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	6e-09
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	7e-09
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	7e-09
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	7e-09
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	8e-09
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	1e-08
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-08
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	2e-08
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	4e-08
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	5e-08
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	5e-08
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	6e-08
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	6e-08
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	4e-07
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	7e-07
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-06
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	1e-06
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	1e-06
2a19_B	284	Interferon-induced, double-stranded RNA-activated	2e-06
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-06
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	4e-06
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-05
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	1e-05
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	1e-05
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	5e-05
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	1e-04
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	1e-04
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	2e-04
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	2e-04
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	3e-04
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	3e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-04
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	6e-04
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	6e-04

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  163 bits (414), Expect = 8e-50
 Identities = 61/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%)

Query: 12  RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHI 71
               L +LEEATNNFD    +G G  G++Y+G L++G  +A++    + S     F   I
Sbjct: 27  YRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEI 86

Query: 72  ELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS-EGHAWQSLTWT 130
           E +S  RH HLVS +G C E          I LI++Y+ NG L+  +        S++W 
Sbjct: 87  ETLSFCRHPHLVSLIGFCDE------RNEMI-LIYKYMENGNLKRHLYGSDLPTMSMSWE 139

Query: 131 QRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVG 190
           QR+   IG ARG+ +LHT     +   ++K  +ILLD+N V KI+ + +       ++  
Sbjct: 140 QRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDFGISKKGTELDQ-T 195

Query: 191 HVT 193
           H++
Sbjct: 196 HLS 198

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  145 bits (368), Expect = 7e-43
 Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 11/184 (5%)

Query: 12  RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH-STRNFMHH 70
           + FSL EL+ A++NF     +G G  G++Y+GRL +GT +A++ LK +++      F   
Sbjct: 18  KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTE 77

Query: 71  IELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQS-LTW 129
           +E+IS   H +L+   G C           R+ L++ Y+ NG++ S + E    Q  L W
Sbjct: 78  VEMISMAVHRNLLRLRGFCMT------PTERL-LVYPYMANGSVASCLRERPESQPPLDW 130

Query: 130 TQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKV 189
            +R   A+G ARG+ +LH    P +   ++K  +ILLD+   A +  + L  L +   K 
Sbjct: 131 PKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMD--YKD 188

Query: 190 GHVT 193
            HVT
Sbjct: 189 THVT 192

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  127 bits (321), Expect = 4e-36
 Identities = 57/177 (32%), Positives = 85/177 (48%), Gaps = 27/177 (15%)

Query: 12  RTFSLEELEEATNNFDTSA------FMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST- 64
            +FS  EL+  TNNFD          MGEG  G +Y+G + N T +A++ L      +T 
Sbjct: 13  HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTE 71

Query: 65  ---RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEG 121
              + F   I++++K +H +LV  LG   +    D       L++ Y+PNG+L   +S  
Sbjct: 72  ELKQQFDQEIKVMAKCQHENLVELLGFSSD---GDD---LC-LVYVYMPNGSLLDRLSCL 124

Query: 122 HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSN---NLKITDILLDQNLVAKIS 175
                L+W  R   A G A GI FLH         +   ++K  +ILLD+   AKIS
Sbjct: 125 DGTPPLSWHMRCKIAQGAANGINFLHEN------HHIHRDIKSANILLDEAFTAKIS 175

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  108 bits (272), Expect = 8e-29
 Identities = 29/169 (17%), Positives = 66/169 (39%), Gaps = 16/169 (9%)

Query: 14  FSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIEL 73
              E L   +           G  G +++ +L    ++A++   ++   S +   + +  
Sbjct: 14  LGTENLYFQSMPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIFPIQDKQSWQ-NEYEVYS 71

Query: 74  ISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRI 133
           +  ++H +++  +G         S    ++LI  +   G+L  ++        ++W +  
Sbjct: 72  LPGMKHENILQFIGAEKR---GTSVDVDLWLITAFHEKGSLSDFLKA----NVVSWNELC 124

Query: 134 SAAIGVARGIQFLHTGIVPGVFSNNLKI-------TDILLDQNLVAKIS 175
             A  +ARG+ +LH  I      +   I        ++LL  NL A I+
Sbjct: 125 HIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIA 173

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 96.4 bits (240), Expect = 3e-24
 Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 18/170 (10%)

Query: 14  FSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMH--HI 71
            +  E     +N      +G G  G +Y+G L +   +A+   K+    + +NF++  +I
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAV---KVFSFANRQNFINEKNI 58

Query: 72  ELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQ 131
             +  + H ++   +                 L+ EY PNG+L  ++S      +  W  
Sbjct: 59  YRVPLMEHDNIARFIVGDERV--TADGRMEYLLVMEYYPNGSLXKYLSL----HTSDWVS 112

Query: 132 RISAAIGVARGIQFLHTGIVPGVFSN------NLKITDILLDQNLVAKIS 175
               A  V RG+ +LHT +  G          +L   ++L+  +    IS
Sbjct: 113 SCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVIS 162

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 86.5 bits (215), Expect = 8e-21
 Identities = 36/146 (24%), Positives = 74/146 (50%), Gaps = 10/146 (6%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHS--TRNFMHHIELISKLRHCHLVSALGHC 89
           + E   G++++GR + G  I ++ LK++   +  +R+F      +    H +++  LG C
Sbjct: 18  LNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGAC 76

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTG 149
                         LI  ++P G+L + + EG     +  +Q +  A+ +ARG+ FLHT 
Sbjct: 77  -----QSPPAPHPTLITHWMPYGSLYNVLHEGTN-FVVDQSQAVKFALDMARGMAFLHT- 129

Query: 150 IVPGVFSNNLKITDILLDQNLVAKIS 175
           + P +  + L    +++D+++ A+IS
Sbjct: 130 LEPLIPRHALNSRSVMIDEDMTARIS 155

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 85.5 bits (212), Expect = 3e-20
 Identities = 28/144 (19%), Positives = 61/144 (42%), Gaps = 13/144 (9%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
           G G+ G + + + +    +AI+  +++     + F+  +  +S++ H ++V   G C   
Sbjct: 17  GRGAFGVVCKAKWR-AKDVAIK--QIESESERKAFIVELRQLSRVNHPNIVKLYGACLNP 73

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 152
                      L+ EY   G+L + +         T    +S  +  ++G+ +LH+    
Sbjct: 74  VC---------LVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPK 124

Query: 153 GVFSNNLKITDILLDQN-LVAKIS 175
            +   +LK  ++LL     V KI 
Sbjct: 125 ALIHRDLKPPNLLLVAGGTVLKIC 148

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 84.7 bits (210), Expect = 6e-20
 Identities = 36/145 (24%), Positives = 72/145 (49%), Gaps = 11/145 (7%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCHLVSALGHCF 90
           G GS G ++R     G+ +A++ L  +  H+     F+  + ++ +LRH ++V  +G   
Sbjct: 46  GAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV- 103

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGI 150
                 +    + ++ EY+  G+L   + +  A + L   +R+S A  VA+G+ +LH   
Sbjct: 104 ------TQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHN-R 156

Query: 151 VPGVFSNNLKITDILLDQNLVAKIS 175
            P +   NLK  ++L+D+    K+ 
Sbjct: 157 NPPIVHRNLKSPNLLVDKKYTVKVC 181

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 83.2 bits (206), Expect = 2e-19
 Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 23/149 (15%)

Query: 33  GEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G+G  GQ  +   +  G  + ++ L      + R F+  ++++  L H +++  +G    
Sbjct: 19  GKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVL-- 76

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
                    R+  I EY+  GTLR  I          W+QR+S A  +A G+ +LH    
Sbjct: 77  -----YKDKRLNFITEYIKGGTLRGIIKSMD--SQYPWSQRVSFAKDIASGMAYLH---- 125

Query: 152 PGVFSNN-----LKITDILLDQNLVAKIS 175
               S N     L   + L+ +N    ++
Sbjct: 126 ----SMNIIHRDLNSHNCLVRENKNVVVA 150

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 78.1 bits (193), Expect = 1e-17
 Identities = 31/155 (20%), Positives = 67/155 (43%), Gaps = 23/155 (14%)

Query: 33  GEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHST-------RNFMHHIELISKLRHCHLVS 84
           G+G  G +++GRL  + + +AI+ L +  S          + F   + ++S L H ++V 
Sbjct: 28  GKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVK 87

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQ 144
             G                ++ E+VP G L   + +      + W+ ++   + +A GI+
Sbjct: 88  LYGLMHNPPR---------MVMEFVPCGDLYHRLLDKA--HPIKWSVKLRLMLDIALGIE 136

Query: 145 FLHTGIVPGVF----SNNLKITDILLDQNLVAKIS 175
           ++     P V     S N+ +  +  +  + AK++
Sbjct: 137 YMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVA 171

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 77.5 bits (191), Expect = 3e-17
 Identities = 30/150 (20%), Positives = 63/150 (42%), Gaps = 18/150 (12%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMH--HIELISKLRHCHLVSALGHCF 90
           G+G  G+++ G+ + G  +A+   K+  +    ++     I     +RH +++  +    
Sbjct: 46  GKGRYGEVWMGKWR-GEKVAV---KVFFTTEEASWFRETEIYQTVLMRHENILGFIAADI 101

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGI 150
           +      S ++++LI +Y  NG+L  ++       +L     +  A     G+  LHT I
Sbjct: 102 K---GTGSWTQLYLITDYHENGSLYDYLKS----TTLDAKSMLKLAYSSVSGLCHLHTEI 154

Query: 151 VPGVFSNN-----LKITDILLDQNLVAKIS 175
                        LK  +IL+ +N    I+
Sbjct: 155 FSTQGKPAIAHRDLKSKNILVKKNGTCCIA 184

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 77.1 bits (190), Expect = 4e-17
 Identities = 34/150 (22%), Positives = 73/150 (48%), Gaps = 18/150 (12%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMH--HIELISKLRHCHLVSALGHCF 90
           G+G  G+++RG+ + G  +A+   K+  S   R++     I     LRH +++  +    
Sbjct: 51  GKGRFGEVWRGKWR-GEEVAV---KIFSSREERSWFREAEIYQTVMLRHENILGFIAADN 106

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGI 150
           +    + + ++++L+ +Y  +G+L  +++      ++T    I  A+  A G+  LH  I
Sbjct: 107 KD---NGTWTQLWLVSDYHEHGSLFDYLNR----YTVTVEGMIKLALSTASGLAHLHMEI 159

Query: 151 V-----PGVFSNNLKITDILLDQNLVAKIS 175
           V     P +   +LK  +IL+ +N    I+
Sbjct: 160 VGTQGKPAIAHRDLKSKNILVKKNGTCCIA 189

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 76.2 bits (188), Expect = 5e-17
 Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 18/150 (12%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIEL--ISKLRHCHLVSALGHCF 90
           G+G  G+++RG    G  +A+   K+  S   +++    EL     LRH +++  +    
Sbjct: 17  GKGRYGEVWRGSW-QGENVAV---KIFSSRDEKSWFRETELYNTVMLRHENILGFIASDM 72

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGI 150
                  S ++++LI  Y   G+L  ++       +L     +   + +A G+  LH  I
Sbjct: 73  T---SRHSSTQLWLITHYHEMGSLYDYLQL----TTLDTVSCLRIVLSIASGLAHLHIEI 125

Query: 151 VPGVFSNN-----LKITDILLDQNLVAKIS 175
                        LK  +IL+ +N    I+
Sbjct: 126 FGTQGKPAIAHRDLKSKNILVKKNGQCCIA 155

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 70.8 bits (174), Expect = 4e-15
 Identities = 28/145 (19%), Positives = 63/145 (43%), Gaps = 17/145 (11%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCHLVSALGHCF 90
           G GS G +Y+G+  +G  +A++ L +        + F + + ++ K RH +++  +G+  
Sbjct: 33  GSGSFGTVYKGKW-HGD-VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS- 89

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGI 150
                  +  ++ ++ ++    +L   +            + I  A   ARG+ +LH   
Sbjct: 90  -------TAPQLAIVTQWCEGSSLYHHLHASE--TKFEMKKLIDIARQTARGMDYLHA-- 138

Query: 151 VPGVFSNNLKITDILLDQNLVAKIS 175
              +   +LK  +I L ++   KI 
Sbjct: 139 -KSIIHRDLKSNNIFLHEDNTVKIG 162

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 70.4 bits (173), Expect = 5e-15
 Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 24/155 (15%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST----RNFMHHIELISKLRHCHLVSALGH 88
           G G  G++YR     G  +A++  +            N     +L + L+H ++++  G 
Sbjct: 16  GIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGV 74

Query: 89  CFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHT 148
           C            + L+ E+   G L   +S     + +     ++ A+ +ARG+ +LH 
Sbjct: 75  C-------LKEPNLCLVMEFARGGPLNRVLSG----KRIPPDILVNWAVQIARGMNYLHD 123

Query: 149 GIVPGVFSNNLKITDILLDQ--------NLVAKIS 175
             +  +   +LK ++IL+ Q        N + KI+
Sbjct: 124 EAIVPIIHRDLKSSNILILQKVENGDLSNKILKIT 158

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 68.9 bits (169), Expect = 3e-14
 Identities = 33/145 (22%), Positives = 62/145 (42%), Gaps = 17/145 (11%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCHLVSALGHCF 90
           G+G  GQ+Y GR  +G  +AIR + +++ +    + F   +    + RH ++V  +G C 
Sbjct: 42  GKGRFGQVYHGRW-HGE-VAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGAC- 98

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGI 150
                  S   + +I       TL S + +      L   +    A  + +G+ +LH   
Sbjct: 99  ------MSPPHLAIITSLCKGRTLYSVVRDAK--IVLDVNKTRQIAQEIVKGMGYLHA-- 148

Query: 151 VPGVFSNNLKITDILLDQNLVAKIS 175
             G+   +LK  ++  D   V  I+
Sbjct: 149 -KGILHKDLKSKNVFYDNGKV-VIT 171

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 65.8 bits (161), Expect = 4e-13
 Identities = 30/153 (19%), Positives = 62/153 (40%), Gaps = 25/153 (16%)

Query: 33  GEGSKGQMYRGRLK-----NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALG 87
           G+G+ G +   R        G  +A++ L+       R+F   I+++  L    +V   G
Sbjct: 32  GKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRG 91

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLH 147
             +           + L+ EY+P+G LR ++    A   L  ++ +  +  + +G+++L 
Sbjct: 92  VSY-----GPGRQSLRLVMEYLPSGCLRDFLQRHRA--RLDASRLLLYSSQICKGMEYLG 144

Query: 148 TGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
                   S       L   +IL++     KI+
Sbjct: 145 --------SRRCVHRDLAARNILVESEAHVKIA 169

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 64.9 bits (159), Expect = 6e-13
 Identities = 34/174 (19%), Positives = 71/174 (40%), Gaps = 23/174 (13%)

Query: 7   GLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRN 66
            + A   F                 +G+G  G +  G  + G  +A++C+K     + + 
Sbjct: 4   SVAAQDEFYRSGWALNMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIK--NDATAQA 60

Query: 67  FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQS 126
           F+    ++++LRH +LV  LG   E          ++++ EY+  G+L  ++        
Sbjct: 61  FLAEASVMTQLRHSNLVQLLGVIVE------EKGGLYIVTEYMAKGSLVDYLRS-RGRSV 113

Query: 127 LTWTQRISAAIGVARGIQFLHTGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
           L     +  ++ V   +++L          NN     L   ++L+ ++ VAK+S
Sbjct: 114 LGGDCLLKFSLDVCEAMEYLE--------GNNFVHRDLAARNVLVSEDNVAKVS 159

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 28/154 (18%)

Query: 33  GEGSKGQMYRGRLKN-----GTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSAL 86
           GEG  G++            G  +A++ LK          +   I+++  L H H++   
Sbjct: 40  GEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYK 99

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFL 146
           G C +     +  + + L+ EYVP G+LR ++       S+   Q +  A  +  G+ +L
Sbjct: 100 GCCED-----AGAASLQLVMEYVPLGSLRDYLPR----HSIGLAQLLLFAQQICEGMAYL 150

Query: 147 HTGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
           H        + +     L   ++LLD + + KI 
Sbjct: 151 H--------AQHYIHRDLAARNVLLDNDRLVKIG 176

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 30/148 (20%), Positives = 59/148 (39%), Gaps = 23/148 (15%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
           G G  G+++       T +A++ +K   S S   F+    ++  L+H  LV       + 
Sbjct: 197 GAGQFGEVWMATYNKHTKVAVKTMK-PGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTK- 254

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 152
                    I++I E++  G+L  ++            + I  +  +A G+ F+      
Sbjct: 255 -------EPIYIITEFMAKGSLLDFLKS-DEGSKQPLPKLIDFSAQIAEGMAFIE----- 301

Query: 153 GVFSNN-----LKITDILLDQNLVAKIS 175
                N     L+  +IL+  +LV KI+
Sbjct: 302 ---QRNYIHRDLRAANILVSASLVCKIA 326

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 23/148 (15%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
           G G  G+++ G     T +A++ LK + S S   F+    L+ +L+H  LV       + 
Sbjct: 22  GAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ- 79

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 152
                    I++I EY+ NG+L  ++    +   LT  + +  A  +A G+ F+      
Sbjct: 80  -------EPIYIITEYMENGSLVDFLKT-PSGIKLTINKLLDMAAQIAEGMAFIE----- 126

Query: 153 GVFSNN-----LKITDILLDQNLVAKIS 175
                N     L+  +IL+   L  KI+
Sbjct: 127 ---ERNYIHRDLRAANILVSDTLSCKIA 151

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 26/154 (16%)

Query: 33  GEGSKGQMYRGRLK-----NGTFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSAL 86
           GEG  G++   R        G  +A++ LK +   +        IE++  L H ++V   
Sbjct: 30  GEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYK 89

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFL 146
           G C E        + I LI E++P+G+L+ ++ +      +   Q++  A+ + +G+ +L
Sbjct: 90  GICTE-----DGGNGIKLIMEFLPSGSLKEYLPKNK--NKINLKQQLKYAVQICKGMDYL 142

Query: 147 HTGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
                    S       L   ++L++     KI 
Sbjct: 143 G--------SRQYVHRDLAARNVLVESEHQVKIG 168

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 32/178 (17%), Positives = 71/178 (39%), Gaps = 26/178 (14%)

Query: 6   LGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHST 64
            G+  +R    ++      +      +G G+ G+++ GRL+ + T +A++  +       
Sbjct: 96  SGVVLHRAVPKDKWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDL 155

Query: 65  RN-FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI-SEGH 122
           +  F+    ++ +  H ++V  +G C +          I+++ E V  G   +++ +EG 
Sbjct: 156 KAKFLQEARILKQYSHPNIVRLIGVCTQK-------QPIYIVMELVQGGDFLTFLRTEGA 208

Query: 123 AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
               L     +      A G+++L         S       L   + L+ +  V KIS
Sbjct: 209 ---RLRVKTLLQMVGDAAAGMEYLE--------SKCCIHRDLAARNCLVTEKNVLKIS 255

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 63.6 bits (155), Expect = 3e-12
 Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 23/148 (15%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
           G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV       E 
Sbjct: 193 GQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE- 250

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 152
                    I+++ EY+  G+L  ++      + L   Q +  A  +A G+ ++      
Sbjct: 251 -------EPIYIVTEYMSKGSLLDFLKG-ETGKYLRLPQLVDMAAQIASGMAYVE----- 297

Query: 153 GVFSNN-----LKITDILLDQNLVAKIS 175
                N     L+  +IL+ +NLV K++
Sbjct: 298 ---RMNYVHRDLRAANILVGENLVCKVA 322

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 31/153 (20%), Positives = 65/153 (42%), Gaps = 25/153 (16%)

Query: 33  GEGSKGQMYRGRLK-----NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALG 87
           G+G+ G +   R        G  +A++ L+       R+F   IE++  L+H ++V   G
Sbjct: 19  GKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKG 78

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLH 147
            C+      +    + LI EY+P G+LR ++ +    + +   + +     + +G+++L 
Sbjct: 79  VCYS-----AGRRNLKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLG 131

Query: 148 TGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
                   +       L   +IL++     KI 
Sbjct: 132 --------TKRYIHRDLATRNILVENENRVKIG 156

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 28/154 (18%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRC-LKMKKSHST----RNFMHHIELISKLRHCHLVSALG 87
           G G  G +Y G L +     I C +K     +       F+    ++    H +++S LG
Sbjct: 34  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLG 93

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWI-SEGHAWQSLTWTQRISAAIGVARGIQFL 146
            C        S     ++  Y+ +G LR++I +E H   + T    I   + VA+G+++L
Sbjct: 94  ICLR------SEGSPLVVLPYMKHGDLRNFIRNETH---NPTVKDLIGFGLQVAKGMKYL 144

Query: 147 HTGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
                    S       L   + +LD+    K++
Sbjct: 145 A--------SKKFVHRDLAARNCMLDEKFTVKVA 170

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 62.8 bits (153), Expect = 4e-12
 Identities = 31/153 (20%), Positives = 65/153 (42%), Gaps = 25/153 (16%)

Query: 33  GEGSKGQMYRGRL-----KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALG 87
           G+G+ G +   R        G  +A++ L+       R+F   IE++  L+H ++V   G
Sbjct: 50  GKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKG 109

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLH 147
            C+      +    + LI EY+P G+LR ++ +    + +   + +     + +G+++L 
Sbjct: 110 VCY-----SAGRRNLKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLG 162

Query: 148 TGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
                   +       L   +IL++     KI 
Sbjct: 163 --------TKRYIHRDLATRNILVENENRVKIG 187

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 63.1 bits (154), Expect = 5e-12
 Identities = 32/148 (21%), Positives = 67/148 (45%), Gaps = 23/148 (15%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
           G+G  G +  G  + G  +A++C+K     + + F+    ++++LRH +LV  LG   E 
Sbjct: 202 GKGEFGDVMLGDYR-GNKVAVKCIK--NDATAQAFLAEASVMTQLRHSNLVQLLGVIVEE 258

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 152
                    ++++ EY+  G+L  ++        L     +  ++ V   +++L      
Sbjct: 259 K------GGLYIVTEYMAKGSLVDYLRS-RGRSVLGGDCLLKFSLDVCEAMEYLE----- 306

Query: 153 GVFSNN-----LKITDILLDQNLVAKIS 175
               NN     L   ++L+ ++ VAK+S
Sbjct: 307 ---GNNFVHRDLAARNVLVSEDNVAKVS 331

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 63.0 bits (153), Expect = 5e-12
 Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 23/148 (15%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
           G+G  G+++ G     T +AI+ LK   + S   F+   +++ KLRH  LV       E 
Sbjct: 276 GQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE- 333

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 152
                    I+++ EY+  G+L  ++      + L   Q +  A  +A G+ ++      
Sbjct: 334 -------EPIYIVTEYMSKGSLLDFLKG-ETGKYLRLPQLVDMAAQIASGMAYVE----- 380

Query: 153 GVFSNN-----LKITDILLDQNLVAKIS 175
                N     L+  +IL+ +NLV K++
Sbjct: 381 ---RMNYVHRDLRAANILVGENLVCKVA 405

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 62.3 bits (152), Expect = 5e-12
 Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 24/157 (15%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRC-LKMKKSHST-----RNFMHHIELISKLRHCHLVSAL 86
           GEG  G +  G LK     +++  +K  K  ++       F+     +    H +++  L
Sbjct: 43  GEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLL 102

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI---SEGHAWQSLTWTQRISAAIGVARGI 143
           G C E       + +  +I  ++  G L +++         + +     +   + +A G+
Sbjct: 103 GVCIEM--SSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGM 160

Query: 144 QFLHTGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
           ++L         + N     L   + +L  ++   ++
Sbjct: 161 EYLS--------NRNFLHRDLAARNCMLRDDMTVCVA 189

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 62.9 bits (153), Expect = 5e-12
 Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 28/154 (18%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRC-LKMKKSHST----RNFMHHIELISKLRHCHLVSALG 87
           G G  G +Y G L +     I C +K     +       F+    ++    H +++S LG
Sbjct: 98  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLG 157

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWI-SEGHAWQSLTWTQRISAAIGVARGIQFL 146
            C        S     ++  Y+ +G LR++I +E H   + T    I   + VA+G++FL
Sbjct: 158 ICLR------SEGSPLVVLPYMKHGDLRNFIRNETH---NPTVKDLIGFGLQVAKGMKFL 208

Query: 147 HTGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
                    S       L   + +LD+    K++
Sbjct: 209 A--------SKKFVHRDLAARNCMLDEKFTVKVA 234

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 62.9 bits (153), Expect = 5e-12
 Identities = 29/149 (19%), Positives = 63/149 (42%), Gaps = 23/149 (15%)

Query: 33  GEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G G  G++Y G  K     +A++ LK + +     F+    ++ +++H +LV  LG C  
Sbjct: 229 GGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 287

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
                      ++I E++  G L  ++ E    Q ++    +  A  ++  +++L     
Sbjct: 288 EP-------PFYIITEFMTYGNLLDYLRE-CNRQEVSAVVLLYMATQISSAMEYLE---- 335

Query: 152 PGVFSNN-----LKITDILLDQNLVAKIS 175
                 N     L   + L+ +N + K++
Sbjct: 336 ----KKNFIHRNLAARNCLVGENHLVKVA 360

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 62.0 bits (151), Expect = 9e-12
 Identities = 30/187 (16%), Positives = 69/187 (36%), Gaps = 23/187 (12%)

Query: 3   LGALGLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRC-LKMKKS 61
           L +LG+       LE++      F     +G+G  G +   +LK      ++  +KM K+
Sbjct: 2   LDSLGISDELKEKLEDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKA 61

Query: 62  HST-----RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRS 116
                     F+     + +  H H+   +G           +    +I  ++ +G L +
Sbjct: 62  DIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSR-AKGRLPIPMVILPFMKHGDLHA 120

Query: 117 WI---SEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNN-----LKITDILLDQ 168
           ++     G    +L     +   + +A G+++L         S N     L   + +L +
Sbjct: 121 FLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS--------SRNFIHRDLAARNCMLAE 172

Query: 169 NLVAKIS 175
           ++   ++
Sbjct: 173 DMTVCVA 179

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 40/169 (23%), Positives = 64/169 (37%), Gaps = 44/169 (26%)

Query: 33  GEGSKGQMYRGRLKNG------TFIAIRCLKMKKSHSTR---NFMHHIELISKLRHCHLV 83
           GEG+ G+++     N         +A+   K  K  S     +F    EL++ L+H H+V
Sbjct: 50  GEGAFGKVFLAECHNLLPEQDKMLVAV---KALKEASESARQDFQREAELLTMLQHQHIV 106

Query: 84  SALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW------------ISEGHAWQSLTWTQ 131
              G C E          + ++FEY+ +G L  +              E  A   L   Q
Sbjct: 107 RFFGVCTEG-------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQ 159

Query: 132 RISAAIGVARGIQFLHTGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
            ++ A  VA G+ +L           +     L   + L+ Q LV KI 
Sbjct: 160 LLAVASQVAAGMVYLA--------GLHFVHRDLATRNCLVGQGLVVKIG 200

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 23/172 (13%)

Query: 9   PAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFM 68
           P+         E    +      +G G  G +  G+ +    +AI+ +K + S S   F+
Sbjct: 9   PSTAGLGYGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFI 67

Query: 69  HHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLT 128
              +++  L H  LV   G C +          IF+I EY+ NG L +++ E        
Sbjct: 68  EEAKVMMNLSHEKLVQLYGVCTKQ-------RPIFIITEYMANGCLLNYLREMR--HRFQ 118

Query: 129 WTQRISAAIGVARGIQFLHTGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
             Q +     V   +++L         S       L   + L++   V K+S
Sbjct: 119 TQQLLEMCKDVCEAMEYLE--------SKQFLHRDLAARNCLVNDQGVVKVS 162

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 44/169 (26%)

Query: 33  GEGSKGQMYRGRLKNG---TFIAIRCLKMKKSHST----RNFMHHIELISKL-RHCHLVS 84
           GEG+ GQ+ + R+K        AI   K  K +++    R+F   +E++ KL  H ++++
Sbjct: 34  GEGNFGQVLKARIKKDGLRMDAAI---KRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 90

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW-------------ISEGHAWQSLTWTQ 131
            LG C            ++L  EY P+G L  +                     +L+  Q
Sbjct: 91  LLGACEHR-------GYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQ 143

Query: 132 RISAAIGVARGIQFLHTGIVPGVFSNNLKITD-----ILLDQNLVAKIS 175
            +  A  VARG+ +L                D     IL+ +N VAKI+
Sbjct: 144 LLHFAADVARGMDYLS--------QKQFIHRDLAARNILVGENYVAKIA 184

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 34/162 (20%)

Query: 33  GEGSKGQMYRGRLKNG------TFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSA 85
           G+GS G +Y G  K        T +AI+ +    S   R  F++   ++ +    H+V  
Sbjct: 34  GQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRL 93

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW-------ISEGHAWQSLTWTQRISAAIG 138
           LG   +            +I E +  G L+S+       ++        + ++ I  A  
Sbjct: 94  LGVVSQ---GQP----TLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGE 146

Query: 139 VARGIQFLHTGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
           +A G+ +L+        +N      L   + ++ ++   KI 
Sbjct: 147 IADGMAYLN--------ANKFVHRDLAARNCMVAEDFTVKIG 180

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 28/154 (18%)

Query: 33  GEGSKGQMYRGRLKNG----TFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSALG 87
           G+G  G +Y G   +        AI+ L           F+    L+  L H ++++ +G
Sbjct: 30  GKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIG 89

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWI-SEGHAWQSLTWTQRISAAIGVARGIQFL 146
                           ++  Y+ +G L  +I S      + T    IS  + VARG+++L
Sbjct: 90  IMLP------PEGLPHVLLPYMCHGDLLQFIRSPQR---NPTVKDLISFGLQVARGMEYL 140

Query: 147 HTGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
                            L   + +LD++   K++
Sbjct: 141 A--------EQKFVHRDLAARNCMLDESFTVKVA 166

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 59.5 bits (145), Expect = 4e-11
 Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 25/149 (16%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
           G G  G +  G+ K    +A++ +K + S S   F    + + KL H  LV   G C   
Sbjct: 17  GSGQFGVVKLGKWKGQYDVAVKMIK-EGSMSEDEFFQEAQTMMKLSHPKLVKFYGVC--- 72

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWI-SEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
               S    I+++ EY+ NG L +++ S G     L  +Q +     V  G+ FL     
Sbjct: 73  ----SKEYPIYIVTEYISNGCLLNYLRSHGK---GLEPSQLLEMCYDVCEGMAFLE---- 121

Query: 152 PGVFSNN-----LKITDILLDQNLVAKIS 175
               S+      L   + L+D++L  K+S
Sbjct: 122 ----SHQFIHRDLAARNCLVDRDLCVKVS 146

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 59.5 bits (145), Expect = 5e-11
 Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 23/148 (15%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
           G G  G ++ G   N   +AI+ ++ + + S  +F+   E++ KL H  LV   G C E 
Sbjct: 17  GSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQ 75

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 152
                  + I L+ E++ +G L  ++              +   + V  G+ +L      
Sbjct: 76  -------APICLVTEFMEHGCLSDYLRTQR--GLFAAETLLGMCLDVCEGMAYLE----- 121

Query: 153 GVFSNN-----LKITDILLDQNLVAKIS 175
                      L   + L+ +N V K+S
Sbjct: 122 ---EACVIHRDLAARNCLVGENQVIKVS 146

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 59.2 bits (144), Expect = 8e-11
 Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 29/154 (18%)

Query: 33  GEGSKGQMYRGRLKNG-----TFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSAL 86
           G G+ G +Y+G            +AI+ L+   S       +    +++ + + H+   L
Sbjct: 24  GSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLL 83

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFL 146
           G C          S + LI + +P G L  ++ E     ++     ++  + +A+G+ +L
Sbjct: 84  GICLT--------STVQLITQLMPFGCLLDYVREHK--DNIGSQYLLNWCVQIAKGMNYL 133

Query: 147 HTGIVPGVFSNNLKITD-----ILLDQNLVAKIS 175
                       L   D     +L+      KI+
Sbjct: 134 E--------DRRLVHRDLAARNVLVKTPQHVKIT 159

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 18/125 (14%)

Query: 33  GEGSKGQMYRGRLKNG------TFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSA 85
           G G+ G++Y G++           +A++ L    S      F+    +ISK  H ++V  
Sbjct: 80  GHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRC 139

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI----SEGHAWQSLTWTQRISAAIGVAR 141
           +G   +           F++ E +  G L+S++           SL     +  A  +A 
Sbjct: 140 IGVSLQS-------LPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIAC 192

Query: 142 GIQFL 146
           G Q+L
Sbjct: 193 GCQYL 197

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 29/162 (17%)

Query: 24  NNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCL---KMKKSHSTRNFMHHIELISKLRH 79
            +F+    +G+G  G +Y  R  ++   +A++ L   +++K+         +E+ S LRH
Sbjct: 9   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 68

Query: 80  CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI------SEGHAWQSLTWTQRI 133
            +++   G     YF D++  R++LI EY P GT+   +       E             
Sbjct: 69  PNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRT-------ATY 114

Query: 134 SAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 175
              +  A  + + H+     V   ++K  ++LL      KI+
Sbjct: 115 ITEL--ANALSYCHS---KRVIHRDIKPENLLLGSAGELKIA 151

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 18/125 (14%)

Query: 33  GEGSKGQMYRGRLKNG------TFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSA 85
           G G+ G++Y G++           +A++ L    S      F+    +ISK  H ++V  
Sbjct: 39  GHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRC 98

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI----SEGHAWQSLTWTQRISAAIGVAR 141
           +G   +           F++ E +  G L+S++           SL     +  A  +A 
Sbjct: 99  IGVSLQS-------LPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIAC 151

Query: 142 GIQFL 146
           G Q+L
Sbjct: 152 GCQYL 156

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 8/87 (9%)

Query: 31  FMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHC 89
            +G+G+ G +Y GR L N   IAI+ +  + S  ++     I L   L+H ++V  LG  
Sbjct: 29  VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLG-- 86

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRS 116
              + ++  +  IF+  E VP G+L +
Sbjct: 87  --SFSENGFIK-IFM--EQVPGGSLSA 108

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 31/173 (17%), Positives = 67/173 (38%), Gaps = 39/173 (22%)

Query: 23  TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH 81
            ++F+  A +G+G+ GQ+ + R   +  + AI+ ++  +       +  + L++ L H +
Sbjct: 5   ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEE-KLSTILSEVMLLASLNHQY 63

Query: 82  LVSALGHCFECYFDDS----------SVSRIFLIFEYVPNGTLRSWISEGHAW----QSL 127
           +V      +  + +              S +F+  EY  NGTL   I   +      +  
Sbjct: 64  VV----RYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYW 119

Query: 128 TWTQRISAAIGVARGIQFLHTGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
              ++I         + ++H        S       LK  +I +D++   KI 
Sbjct: 120 RLFRQI------LEALSYIH--------SQGIIHRDLKPMNIFIDESRNVKIG 158

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 31/197 (15%), Positives = 80/197 (40%), Gaps = 31/197 (15%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHH-IELISKLRHCH 81
            +F+    +G G  G ++  + K +    AI+ +++      R  +   ++ ++KL H  
Sbjct: 5   TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG 64

Query: 82  LVSALGHCFECYFDDSSVSR---------IFLIFEYVPNGTLRSWISEGHAWQSLTWTQR 132
           +V      F  + + ++  +         +++  +      L+ W++     +    +  
Sbjct: 65  IV----RYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVC 120

Query: 133 ISAAIGVARGIQFLHT-GIV-----PG-VF---SNNLKITDI----LLDQNLVAKISSYN 178
           +   + +A  ++FLH+ G++     P  +F    + +K+ D      +DQ+   +     
Sbjct: 121 LHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTP 180

Query: 179 LPLLAENAEKVGHVTPY 195
           +P  A +  +VG  T  
Sbjct: 181 MPAYARHTGQVG--TKL 195

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 39/167 (23%)

Query: 33  GEGSKGQMYRGRLKNG------TFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSAL 86
           GEG+ G+++     N         +A++ LK     + ++F    EL++ L+H H+V   
Sbjct: 24  GEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFY 83

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSW-------------ISEGHAWQSLTWTQRI 133
           G C +          + ++FEY+ +G L  +                  A   L  +Q +
Sbjct: 84  GVCGDG-------DPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQML 136

Query: 134 SAAIGVARGIQFLHTGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
             A  +A G+ +L         S +     L   + L+  NL+ KI 
Sbjct: 137 HIASQIASGMVYLA--------SQHFVHRDLATRNCLVGANLLVKIG 175

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 30/155 (19%)

Query: 33  GEGSKGQMYRGRLK----NGTFIAIRCLK---MKKSHSTRNFMHHIELISKLRHCHLVSA 85
           G+GS G + RG           +A++CLK   + +  +  +F+  +  +  L H +L+  
Sbjct: 27  GDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRL 86

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQF 145
            G              + ++ E  P G+L   + +               A+ VA G+ +
Sbjct: 87  YGVVLT--------PPMKMVTELAPLGSLLDRLRKHQ--GHFLLGTLSRYAVQVAEGMGY 136

Query: 146 LHTGIVPGVFSNNLKITD-----ILLDQNLVAKIS 175
           L         S      D     +LL    + KI 
Sbjct: 137 LE--------SKRFIHRDLAARNLLLATRDLVKIG 163

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 29/154 (18%)

Query: 33  GEGSKGQMYRGRLKNG-----TFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSAL 86
           G G+ G +Y+G            +AI+ L+   S       +    +++ + + H+   L
Sbjct: 24  GSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLL 83

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFL 146
           G C          S + LI + +P G L  ++ E     ++     ++  + +A+G+ +L
Sbjct: 84  GICLT--------STVQLITQLMPFGCLLDYVREHK--DNIGSQYLLNWCVQIAKGMNYL 133

Query: 147 HTGIVPGVFSNNLKITD-----ILLDQNLVAKIS 175
                       L   D     +L+      KI+
Sbjct: 134 E--------DRRLVHRDLAARNVLVKTPQHVKIT 159

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 56.8 bits (138), Expect = 4e-10
 Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 40/168 (23%)

Query: 33  GEGSKGQMYRGRLKNG------TFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSA 85
           GE   G++Y+G L           +AI+ LK K     R  F H   L ++L+H ++V  
Sbjct: 18  GEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCL 77

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW-------------ISEGHAWQSLTWTQR 132
           LG   +   D      + +IF Y  +G L  +               +     +L     
Sbjct: 78  LGVVTK---DQP----LSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDF 130

Query: 133 ISAAIGVARGIQFLHTGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
           +     +A G+++L         S++     L   ++L+   L  KIS
Sbjct: 131 VHLVAQIAAGMEYLS--------SHHVVHKDLATRNVLVYDKLNVKIS 170

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 26/144 (18%), Positives = 55/144 (38%), Gaps = 8/144 (5%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           GEG    +     L +G F A++ +   +           ++     H +++  + +C  
Sbjct: 38  GEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLR 97

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRI-SAAIGVARGIQFLHTGI 150
              +  +    +L+  +   GTL + I       +     +I    +G+ RG++ +H   
Sbjct: 98  ---ERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA-- 152

Query: 151 VPGVFSNNLKITDILLDQNLVAKI 174
             G    +LK T+ILL       +
Sbjct: 153 -KGYAHRDLKPTNILLGDEGQPVL 175

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 56.9 bits (138), Expect = 4e-10
 Identities = 29/151 (19%), Positives = 63/151 (41%), Gaps = 27/151 (17%)

Query: 33  GEGSKGQMYRGRLKNG-TFIAIRCLKMKKSHST--RNFMHHIELISKLRHCHLVSALGHC 89
           G G  G++Y G  K     +A+   K  K  +     F+    ++ +++H +LV  LG C
Sbjct: 22  GGGQYGEVYEGVWKKYSLTVAV---KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 78

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTG 149
                  +     ++I E++  G L  ++ E +  Q ++    +  A  ++  +++L   
Sbjct: 79  -------TREPPFYIITEFMTYGNLLDYLRECNR-QEVSAVVLLYMATQISSAMEYLE-- 128

Query: 150 IVPGVFSNN-----LKITDILLDQNLVAKIS 175
                   N     L   + L+ +N + K++
Sbjct: 129 ------KKNFIHRDLAARNCLVGENHLVKVA 153

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 56.9 bits (138), Expect = 4e-10
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 17/122 (13%)

Query: 33  GEGSKGQMYRGRLKN--------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVS 84
           G+G+  ++++G  +          T + ++ L     + + +F     ++SKL H HLV 
Sbjct: 17  GQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVL 76

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQ 144
             G C              L+ E+V  G+L +++ +      +    ++  A  +A  + 
Sbjct: 77  NYGVCVCG-------DENILVQEFVKFGSLDTYLKKNK--NCINILWKLEVAKQLAAAMH 127

Query: 145 FL 146
           FL
Sbjct: 128 FL 129

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 56.6 bits (137), Expect = 6e-10
 Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 27/153 (17%)

Query: 33  GEGSKGQMYRGRLKNG----TFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALG 87
           G G  G++  GRLK        +AI+ LK+  +   R +F+    ++ +  H +++   G
Sbjct: 54  GAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEG 113

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLH 147
                    +    + ++ EY+ NG+L S++ +  A    T  Q +    G+A G+++L 
Sbjct: 114 VV-------TKSKPVMIVTEYMENGSLDSFLRKHDA--QFTVIQLVGMLRGIASGMKYLS 164

Query: 148 TGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
                           L   +IL++ NLV K+S
Sbjct: 165 --------DMGYVHRDLAARNILINSNLVCKVS 189

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 56.5 bits (137), Expect = 6e-10
 Identities = 29/152 (19%), Positives = 57/152 (37%), Gaps = 27/152 (17%)

Query: 33  GEGSKGQMYRGRLKNG---TFIAIRCLKM-KKSHSTRNFMHHIELISKLRHCHLVSALGH 88
           G G+ G + +G  +       +AI+ LK   +   T   M   +++ +L + ++V  +G 
Sbjct: 19  GCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGV 78

Query: 89  CFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHT 148
           C            + L+ E    G L  ++      + +  +        V+ G+++L  
Sbjct: 79  CQA--------EALMLVMEMAGGGPLHKFLVGKR--EEIPVSNVAELLHQVSMGMKYLE- 127

Query: 149 GIVPGVFSNN-----LKITDILLDQNLVAKIS 175
                    N     L   ++LL     AKIS
Sbjct: 128 -------EKNFVHRDLAARNVLLVNRHYAKIS 152

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 35/178 (19%), Positives = 66/178 (37%), Gaps = 52/178 (29%)

Query: 33  GEGSKGQMYRGRLKNG------TFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSA 85
           GEG+ G++++ R          T +A++ LK + S   +  F     L+++  + ++V  
Sbjct: 56  GEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKL 115

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW---------------------ISEGHAW 124
           LG C            + L+FEY+  G L  +                            
Sbjct: 116 LGVCAV---GKP----MCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGP 168

Query: 125 QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKIT--D-----ILLDQNLVAKIS 175
             L+  +++  A  VA G+ +L          +  K    D      L+ +N+V KI+
Sbjct: 169 PPLSCAEQLCIARQVAAGMAYL----------SERKFVHRDLATRNCLVGENMVVKIA 216

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 56.1 bits (136), Expect = 7e-10
 Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 31/163 (19%)

Query: 24  NNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHH----IELISKLR 78
           ++FD    +G+G  G +Y  R  +N   +A++ L  K         H     IE+ S LR
Sbjct: 14  DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLF-KSQLEKEGVEHQLRREIEIQSHLR 72

Query: 79  HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI------SEGHAWQSLTWTQR 132
           H +++         YF D    RI+L+ E+ P G L   +       E  +    T+ + 
Sbjct: 73  HPNILRMYN-----YFHDRK--RIYLMLEFAPRGELYKELQKHGRFDEQRSA---TFMEE 122

Query: 133 ISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 175
           ++ A      + + H      V   ++K  ++L+      KI+
Sbjct: 123 LADA------LHYCHE---RKVIHRDIKPENLLMGYKGELKIA 156

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 56.8 bits (137), Expect = 8e-10
 Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 28/153 (18%)

Query: 33  GEGSKGQMYRGRLKNG----TFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALG 87
           GEG  G +++G   +       +AI+  K   S S R  F+     + +  H H+V  +G
Sbjct: 399 GEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIG 458

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLH 147
              E        + +++I E    G LRS++       SL     I  A  ++  + +L 
Sbjct: 459 VITE--------NPVWIIMELCTLGELRSFLQVRK--FSLDLASLILYAYQLSTALAYLE 508

Query: 148 TGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
                   S       +   ++L+  N   K+ 
Sbjct: 509 --------SKRFVHRDIAARNVLVSSNDCVKLG 533

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 56.2 bits (136), Expect = 8e-10
 Identities = 27/154 (17%), Positives = 59/154 (38%), Gaps = 29/154 (18%)

Query: 33  GEGSKGQMYRGRLK-----NGTFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSAL 86
           G G  G +++G            + I+ ++ K    +      H+  I  L H H+V  L
Sbjct: 22  GSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLL 81

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFL 146
           G C          S + L+ +Y+P G+L   + +     +L     ++  + +A+G+ +L
Sbjct: 82  GLCPG--------SSLQLVTQYLPLGSLLDHVRQHR--GALGPQLLLNWGVQIAKGMYYL 131

Query: 147 HTGIVPGVFSNNLKITD-----ILLDQNLVAKIS 175
                     + +   +     +LL      +++
Sbjct: 132 E--------EHGMVHRNLAARNVLLKSPSQVQVA 157

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 27/154 (17%), Positives = 56/154 (36%), Gaps = 31/154 (20%)

Query: 33  GEGSKGQMYRGRLKNG---TFIAIRCLK---MKKSHSTRNFMHHIELISKLRHCHLVSAL 86
           G G+ G + +G  +       +A++ LK      +      +    ++ +L + ++V  +
Sbjct: 26  GSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPA-LKDELLAEANVMQQLDNPYIVRMI 84

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFL 146
           G C              L+ E    G L  ++ +    + +     I     V+ G+++L
Sbjct: 85  GIC--------EAESWMLVMEMAELGPLNKYLQQN---RHVKDKNIIELVHQVSMGMKYL 133

Query: 147 HTGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
                     +N     L   ++LL     AKIS
Sbjct: 134 E--------ESNFVHRDLAARNVLLVTQHYAKIS 159

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 37/174 (21%), Positives = 62/174 (35%), Gaps = 50/174 (28%)

Query: 33  GEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHST----RNFMHHIELISKL-RHCH 81
           G G+ GQ+                +A+   KM K  +T    R  M  ++++  +  H +
Sbjct: 36  GRGAFGQVIEADAFGIDKTATCRTVAV---KMLKEGATHSEHRALMSELKILIHIGHHLN 92

Query: 82  LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW-------------ISEGHAWQSLT 128
           +V+ LG C +          + +I E+   G L ++               E      LT
Sbjct: 93  VVNLLGACTK------PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLT 146

Query: 129 WTQRISAAIGVARGIQFLHTGIVPGVFSNNLKIT--D-----ILLDQNLVAKIS 175
               I  +  VA+G++FL           + K    D     ILL +  V KI 
Sbjct: 147 LEHLICYSFQVAKGMEFL----------ASRKCIHRDLAARNILLSEKNVVKIC 190

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 28/153 (18%)

Query: 33  GEGSKGQMYRGRLKNG----TFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALG 87
           GEG  G++Y G   N       +A++  K   +   +  FM    ++  L H H+V  +G
Sbjct: 21  GEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIG 80

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLH 147
                          ++I E  P G L  ++       SL     +  ++ + + + +L 
Sbjct: 81  II--------EEEPTWIIMELYPYGELGHYLERNK--NSLKVLTLVLYSLQICKAMAYLE 130

Query: 148 TGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
                   S N     + + +IL+      K+ 
Sbjct: 131 --------SINCVHRDIAVRNILVASPECVKLG 155

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 27/153 (17%)

Query: 33  GEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALG 87
           G G  G++  GRL+        +AI+ LK   +   R +F+    ++ +  H +++   G
Sbjct: 58  GSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEG 117

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLH 147
                           ++ EY+ NG+L +++         T  Q +    GV  G+++L 
Sbjct: 118 VVTRG-------RLAMIVTEYMENGSLDTFLRTHD--GQFTIMQLVGMLRGVGAGMRYLS 168

Query: 148 TGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
                           L   ++L+D NLV K+S
Sbjct: 169 --------DLGYVHRDLAARNVLVDSNLVCKVS 193

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 29/161 (18%)

Query: 25  NFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCL---KMKKSHSTRNFMHHIELISKLRHC 80
            +    F+G+G   + +           A + +    + K H        I +   L H 
Sbjct: 42  RYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQ 101

Query: 81  HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTL------RSWISEGHAWQSLTWTQRIS 134
           H+V      F  +F+D+    +F++ E     +L      R  ++E  A   L   Q + 
Sbjct: 102 HVVG-----FHGFFEDND--FVFVVLELCRRRSLLELHKRRKALTEPEARYYL--RQIVL 152

Query: 135 AAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 175
                    Q+LH      V   +LK+ ++ L+++L  KI 
Sbjct: 153 G-------CQYLHR---NRVIHRDLKLGNLFLNEDLEVKIG 183

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 39/167 (23%)

Query: 33  GEGSKGQMYRGRLK------NGTFIAIRCLKMKKSHSTRN-FMHHIELISKL-RHCHLVS 84
           G G+ G++                +A++ LK       +   M  ++++S L +H ++V+
Sbjct: 55  GAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVN 114

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW-----------ISEGHAWQSLTWTQRI 133
            LG C       +    + +I EY   G L ++            +   A  + +    +
Sbjct: 115 LLGAC-------THGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLL 167

Query: 134 SAAIGVARGIQFLHTGIVPGVFSNNLKITD-----ILLDQNLVAKIS 175
             +  VA+G+ FL         S N    D     +LL    VAKI 
Sbjct: 168 HFSSQVAQGMAFLA--------SKNCIHRDVAARNVLLTNGHVAKIG 206

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 28/153 (18%)

Query: 33  GEGSKGQMYRGRLKNG----TFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALG 87
           GEG  G +++G   +       +AI+  K   S S R  F+     + +  H H+V  +G
Sbjct: 24  GEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIG 83

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLH 147
              E        + +++I E    G LRS++       SL     I  A  ++  + +L 
Sbjct: 84  VITE--------NPVWIIMELCTLGELRSFLQVRK--YSLDLASLILYAYQLSTALAYLE 133

Query: 148 TGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
                   S       +   ++L+  N   K+ 
Sbjct: 134 --------SKRFVHRDIAARNVLVSSNDCVKLG 158

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 28/154 (18%)

Query: 33  GEGSKGQMYRGRLKNGTF-----IAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSAL 86
           G G  G++Y+G LK  +      +AI+ LK   +   R +F+    ++ +  H +++   
Sbjct: 53  GAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLE 112

Query: 87  GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFL 146
           G         S    + +I EY+ NG L  ++ E       +  Q +    G+A G+++L
Sbjct: 113 GVI-------SKYKPMMIITEYMENGALDKFLREKD--GEFSVLQLVGMLRGIAAGMKYL 163

Query: 147 HTGIVPGVFSNN-----LKITDILLDQNLVAKIS 175
                    + N     L   +IL++ NLV K+S
Sbjct: 164 A--------NMNYVHRDLAARNILVNSNLVCKVS 189

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 54.2 bits (130), Expect = 5e-09
 Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 27/152 (17%)

Query: 33  GEGSKGQMYRGRLKNG---TFIAIRCLKMKKSHSTRN-FMHHIELISKLRHCHLVSALGH 88
           G G+ G + +G  +       +AI+ LK     +     M   +++ +L + ++V  +G 
Sbjct: 345 GCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGV 404

Query: 89  CFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHT 148
           C            + L+ E    G L  ++      + +  +        V+ G+++L  
Sbjct: 405 C--------QAEALMLVMEMAGGGPLHKFLVGKR--EEIPVSNVAELLHQVSMGMKYLE- 453

Query: 149 GIVPGVFSNN-----LKITDILLDQNLVAKIS 175
                    N     L   ++LL     AKIS
Sbjct: 454 -------EKNFVHRNLAARNVLLVNRHYAKIS 478

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 53.3 bits (129), Expect = 6e-09
 Identities = 33/160 (20%), Positives = 74/160 (46%), Gaps = 24/160 (15%)

Query: 24  NNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCL---KMKKSHSTRNFMHHIELISKLRH 79
            +F     +G+GS   +YR   +  G  +AI+ +    M K+   +   + +++  +L+H
Sbjct: 11  EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKH 70

Query: 80  CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTL-RSWISEGHA---WQSLTWTQRISA 135
             ++         YF+DS+   ++L+ E   NG + R   +        ++  +  +I  
Sbjct: 71  PSILE-----LYNYFEDSN--YVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQI-- 121

Query: 136 AIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 175
                 G+ +LH+    G+   +L ++++LL +N+  KI+
Sbjct: 122 ----ITGMLYLHS---HGILHRDLTLSNLLLTRNMNIKIA 154

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 53.4 bits (129), Expect = 7e-09
 Identities = 36/181 (19%), Positives = 69/181 (38%), Gaps = 58/181 (32%)

Query: 33  GEGSKGQMYRGRLKNG------TFIAIRCLKMKKSHST----RNFMHHIELISKLRHCHL 82
           GEG  G++ +    +       T +A+   KM K +++    R+ +    ++ ++ H H+
Sbjct: 32  GEGEFGKVVKATAFHLKGRAGYTTVAV---KMLKENASPSELRDLLSEFNVLKQVNHPHV 88

Query: 83  VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW---------------------ISEG 121
           +   G C +          + LI EY   G+LR +                       + 
Sbjct: 89  IKLYGACSQD-------GPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDH 141

Query: 122 HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKIT--D-----ILLDQNLVAKI 174
              ++LT    IS A  +++G+Q+L            +K+   D     IL+ +    KI
Sbjct: 142 PDERALTMGDLISFAWQISQGMQYL----------AEMKLVHRDLAARNILVAEGRKMKI 191

Query: 175 S 175
           S
Sbjct: 192 S 192

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 53.9 bits (129), Expect = 7e-09
 Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 11/149 (7%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALGHCF 90
           G G  G + R      G  +AI+  + + S   R  +   I+++ KL H ++V +     
Sbjct: 23  GTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVV-SAREVP 81

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHT-G 149
           +     +      L  EY   G LR ++++      L      +    ++  +++LH   
Sbjct: 82  DGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENR 141

Query: 150 IVPGVFSNNLKITDILLD---QNLVAKIS 175
           I+      +LK  +I+L    Q L+ KI 
Sbjct: 142 IIH----RDLKPENIVLQPGPQRLIHKII 166

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 53.4 bits (129), Expect = 7e-09
 Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 47/173 (27%)

Query: 33  GEGSKGQMYRGRL--------KNGTFIAIRCLKMKKSHSTRN-FMHHIELISKL-RHCHL 82
           GEG+ GQ+             K    +A++ LK   +    +  +  +E++  + +H ++
Sbjct: 44  GEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNI 103

Query: 83  VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW-------------ISEGHAWQSLTW 129
           ++ LG C +          +++I EY   G LR +                    + +T+
Sbjct: 104 INLLGACTQD-------GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTF 156

Query: 130 TQRISAAIGVARGIQFLHTGIVPGVFSNNLKIT--D-----ILLDQNLVAKIS 175
              +S    +ARG+++L           + K    D     +L+ +N V KI+
Sbjct: 157 KDLVSCTYQLARGMEYL----------ASQKCIHRDLAARNVLVTENNVMKIA 199

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 53.0 bits (128), Expect = 8e-09
 Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 29/161 (18%)

Query: 25  NFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCL---KMKKSHSTRNFMHHIELISKLRHC 80
            +    F+G+G   + +           A + +    + K H        I +   L H 
Sbjct: 16  RYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQ 75

Query: 81  HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTL------RSWISEGHAWQSLTWTQRIS 134
           H+V      F  +F+D+    +F++ E     +L      R  ++E  A   L   Q + 
Sbjct: 76  HVVG-----FHGFFEDND--FVFVVLELCRRRSLLELHKRRKALTEPEARYYL--RQIVL 126

Query: 135 AAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 175
                    Q+LH      V   +LK+ ++ L+++L  KI 
Sbjct: 127 G-------CQYLHR---NRVIHRDLKLGNLFLNEDLEVKIG 157

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 47/173 (27%)

Query: 33  GEGSKGQMYRGRL--------KNGTFIAIRCLKMKKSHSTRN-FMHHIELISKL-RHCHL 82
           GEG  GQ+             K    +A++ LK   +    +  +  +E++  + +H ++
Sbjct: 90  GEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNI 149

Query: 83  VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRS-------------WISEGHAWQSLTW 129
           ++ LG C +   D      +++I EY   G LR              +       + +T+
Sbjct: 150 INLLGACTQ---DGP----LYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTF 202

Query: 130 TQRISAAIGVARGIQFLHTGIVPGVFSNNLKIT--D-----ILLDQNLVAKIS 175
              +S    +ARG+++L           + K    D     +L+ +N V KI+
Sbjct: 203 KDLVSCTYQLARGMEYL----------ASQKCIHRDLAARNVLVTENNVMKIA 245

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 3/144 (2%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCF 90
            EG    +Y  + + +G   A++ L   +    R  +  +  + KL  H ++V       
Sbjct: 37  AEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAAS 96

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGI 150
               +  +    FL+   +  G L  ++ +  +   L+    +       R +Q +H   
Sbjct: 97  IGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHR-Q 155

Query: 151 VPGVFSNNLKITDILLDQNLVAKI 174
            P +   +LK+ ++LL      K+
Sbjct: 156 KPPIIHRDLKVENLLLSNQGTIKL 179

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 38/178 (21%), Positives = 64/178 (35%), Gaps = 52/178 (29%)

Query: 33  GEGSKGQMYRGRLKNG------TFIAIRCLKMKKSHSTRN-FMHHIELISKL-RHCHLVS 84
           G G+ G++                +A++ LK K   S R   M  ++++++L  H ++V+
Sbjct: 54  GSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVN 113

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW--------------------ISEGHAW 124
            LG C            I+LIFEY   G L ++                    + E    
Sbjct: 114 LLGACTL---SGP----IYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDL 166

Query: 125 QSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKIT--D-----ILLDQNLVAKIS 175
             LT+   +  A  VA+G++FL                  D     +L+    V KI 
Sbjct: 167 NVLTFEDLLCFAYQVAKGMEFL----------EFKSCVHRDLAARNVLVTHGKVVKIC 214

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 51.3 bits (123), Expect = 4e-08
 Identities = 33/147 (22%), Positives = 56/147 (38%), Gaps = 21/147 (14%)

Query: 33  GEGSKGQMYRGRLK-NGTFIAIRCL-KMKKSHSTRNFMHHIELISKLRHCHLVSALGHCF 90
           G+G+   ++RGR K  G   AI+    +         M   E++ KL H ++V      F
Sbjct: 18  GQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKL----F 73

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHT-G 149
               + ++     LI E+ P G+L + + E      L  ++ +     V  G+  L   G
Sbjct: 74  AIEEETTT-RHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENG 132

Query: 150 IV-------------PGVFSNNLKITD 163
           IV                  +  K+TD
Sbjct: 133 IVHRNIKPGNIMRVIGEDGQSVYKLTD 159

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 50.7 bits (122), Expect = 5e-08
 Identities = 33/173 (19%), Positives = 58/173 (33%), Gaps = 47/173 (27%)

Query: 33  GEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHSTRN-FMHHIELISKL-RHCHLVS 84
           G G+ G++                +A++ LK     + R   M  ++++S L  H ++V+
Sbjct: 32  GAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVN 91

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW---------------ISEGHAWQSLTW 129
            LG C       +      +I EY   G L ++                       +L  
Sbjct: 92  LLGAC-------TIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDL 144

Query: 130 TQRISAAIGVARGIQFLHTGIVPGVFSNNLKIT--D-----ILLDQNLVAKIS 175
              +S +  VA+G+ FL           +      D     ILL    + KI 
Sbjct: 145 EDLLSFSYQVAKGMAFL----------ASKNCIHRDLAARNILLTHGRITKIC 187

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 50.9 bits (122), Expect = 5e-08
 Identities = 23/168 (13%), Positives = 60/168 (35%), Gaps = 38/168 (22%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHH-----------------IELIS 75
            +G   ++     K+  F A++  +       R+F                    +++I+
Sbjct: 40  NQGKFNKIILCE-KDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIIT 98

Query: 76  KLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISA 135
            +++ + +     C      +     +++I+EY+ N ++  +         L        
Sbjct: 99  DIKNEYCL----TCEG-IITNYD--EVYIIYEYMENDSILKFDEYF---FVLDKNYTCFI 148

Query: 136 AIGVAR--------GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 175
            I V +           ++H      +   ++K ++IL+D+N   K+S
Sbjct: 149 PIQVIKCIIKSVLNSFSYIHNEK--NICHRDVKPSNILMDKNGRVKLS 194

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 33/147 (22%), Positives = 56/147 (38%), Gaps = 21/147 (14%)

Query: 33  GEGSKGQMYRGRLK-NGTFIAIRCL-KMKKSHSTRNFMHHIELISKLRHCHLVSALGHCF 90
           G+G+   ++RGR K  G   AI+    +         M   E++ KL H ++V      F
Sbjct: 18  GQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKL----F 73

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHT-G 149
               + ++     LI E+ P G+L + + E      L  ++ +     V  G+  L   G
Sbjct: 74  AIEEETTT-RHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENG 132

Query: 150 IV-------------PGVFSNNLKITD 163
           IV                  +  K+TD
Sbjct: 133 IVHRNIKPGNIMRVIGEDGQSVYKLTD 159

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 34/171 (19%), Positives = 68/171 (39%), Gaps = 43/171 (25%)

Query: 33  GEGSKGQMYRGRLKN--------GTFIAIRCLKMKKSHSTRN-FMHHIELISKL-RHCHL 82
           GEG+ GQ+                T +A++ LK   +    +  +  +E++  + +H ++
Sbjct: 78  GEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNI 137

Query: 83  VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW-------------ISEGHAWQSLTW 129
           ++ LG C +          +++I EY   G LR +                 +  + L+ 
Sbjct: 138 INLLGACTQD-------GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSS 190

Query: 130 TQRISAAIGVARGIQFLHTGIVPGVFSNNLKITD-----ILLDQNLVAKIS 175
              +S A  VARG+++L         S      D     +L+ ++ V KI+
Sbjct: 191 KDLVSCAYQVARGMEYLA--------SKKCIHRDLAARNVLVTEDNVMKIA 233

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 48.4 bits (115), Expect = 4e-07
 Identities = 27/166 (16%), Positives = 61/166 (36%), Gaps = 20/166 (12%)

Query: 17  EELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRC---LKMKKSHSTRNFMHHIEL 73
            E +  +        +GEG+  Q+Y     +      +    LK++K  +   F    +L
Sbjct: 58  TEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQL 117

Query: 74  ISKLR---HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISE--GHAWQSLT 128
           + +L+       +      +  +   +      L+ E    GTL + I+       + + 
Sbjct: 118 MERLKPSMQHMFM----KFYSAHLFQN---GSVLVGELYSYGTLLNAINLYKNTPEKVMP 170

Query: 129 WTQRISAAIGVARGIQFLHT-GIVPGVFSNNLKITDILLDQNLVAK 173
               IS A+ +   I+ +H   I+ G    ++K  + +L    + +
Sbjct: 171 QGLVISFAMRMLYMIEQVHDCEIIHG----DIKPDNFILGNGFLEQ 212

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 26/154 (16%), Positives = 60/154 (38%), Gaps = 33/154 (21%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRC--LKMKKSHSTRNFMHHIELISKLRHCHL-VSALGHC 89
           G G   ++++   +     AI+   L+   + +  ++ + I  ++KL+     +  L   
Sbjct: 18  GSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL--- 74

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLT-------WTQRISAAIGVARG 142
           ++    D     I+++ E   N  L SW+ +    +S+        W         +   
Sbjct: 75  YDYEITD---QYIYMVMECG-NIDLNSWLKKK---KSIDPWERKSYWKN-------MLEA 120

Query: 143 IQFLHT-GIVPGVFSNNLKITDILLDQNLVAKIS 175
           +  +H  GIV      +LK  + L+   ++ K+ 
Sbjct: 121 VHTIHQHGIVHS----DLKPANFLIVDGML-KLI 149

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 19/124 (15%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCHLVSALGHC 89
           G GS   +Y+G   +    +A   L+ +K   +  + F    E++  L+H ++V      
Sbjct: 35  GRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSW 94

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISE-GH----AWQSLTWTQRISAAIGVARGIQ 144
                       I L+ E + +GTL++++           +S  W ++I       +G+Q
Sbjct: 95  ESTVKGKK---CIVLVTELMTSGTLKTYLKRFKVMKIKVLRS--WCRQI------LKGLQ 143

Query: 145 FLHT 148
           FLHT
Sbjct: 144 FLHT 147

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 23/148 (15%), Positives = 56/148 (37%), Gaps = 21/148 (14%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRC--LKMKKSHSTRNFMHHIELISKLRH--CHLVSALGH 88
           G G   ++++   +     AI+   L+   + +  ++ + I  ++KL+     ++     
Sbjct: 37  GSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYD- 95

Query: 89  CFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHT 148
               Y        I+++ E   N  L SW+ +  +       +     +     +  +H 
Sbjct: 96  ----YEITD--QYIYMVMECG-NIDLNSWLKKKKSI-DPWERKSYWKNM--LEAVHTIHQ 145

Query: 149 -GIVPGVFSNNLKITDILLDQNLVAKIS 175
            GIV      +LK  + L+   ++ K+ 
Sbjct: 146 HGIVHS----DLKPANFLIVDGML-KLI 168

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 26/153 (16%), Positives = 57/153 (37%), Gaps = 31/153 (20%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRC--LKMKKSHSTRNFMHHIELISKLRH-CHLVSALGHC 89
           G G   ++++   +     AI+   L+   + +  ++ + I  ++KL+     +  L   
Sbjct: 65  GSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL--- 121

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWI------SEGHAWQSLTWTQRISAAIGVARGI 143
           ++    D     I+++ E   N  L SW+                W   + A       +
Sbjct: 122 YDYEITD---QYIYMVMECG-NIDLNSWLKKKKSIDPWER--KSYWKNMLEA-------V 168

Query: 144 QFLHT-GIVPGVFSNNLKITDILLDQNLVAKIS 175
             +H  GIV      +LK  + L+   ++ K+ 
Sbjct: 169 HTIHQHGIVHS----DLKPANFLIVDGML-KLI 196

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 32/178 (17%), Positives = 61/178 (34%), Gaps = 52/178 (29%)

Query: 24  NNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHL 82
            +F     +G G  GQ+++ +   +G    I+ +K             ++ ++KL H ++
Sbjct: 11  MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNI 66

Query: 83  VSALGHCFECYFDDSSVS-------------RIFLIFEYVPNGTLRSWI--------SEG 121
           V    H   C+                     +F+  E+   GTL  WI         + 
Sbjct: 67  V----HYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKV 122

Query: 122 HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNN-----LKITDILLDQNLVAKI 174
            A +     ++I       +G+ ++H        S       LK ++I L      KI
Sbjct: 123 LALE---LFEQI------TKGVDYIH--------SKKLINRDLKPSNIFLVDTKQVKI 163

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 13/105 (12%)

Query: 18  ELEEATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISK 76
           E  E  +       +G GS G+++R +  + G   A++ ++++        +  +   + 
Sbjct: 52  EYREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFR-----VEELVACAG 106

Query: 77  LRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEG 121
           L    +V   G       +   V+ IF+  E +  G+L   I + 
Sbjct: 107 LSSPRIVPLYG----AVREGPWVN-IFM--ELLEGGSLGQLIKQM 144

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 21/152 (13%), Positives = 57/152 (37%), Gaps = 25/152 (16%)

Query: 33  GEGSKGQMYRGR-LKNGTFIA---IRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGH 88
           G G   ++YR   L +G  +A   ++   +  + +  + +  I+L+ +L H +++     
Sbjct: 41  GRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIK---- 96

Query: 89  CFECYFDDSSVSRIFLIFEYVPNGTLRSWISE-GHAWQSLTWTQRISAAIGVARGIQFLH 147
            +  + +D+    + ++ E    G L   I       + +         + +   ++ +H
Sbjct: 97  YYASFIEDNE---LNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH 153

Query: 148 TGIVPGVFSNN-----LKITDILLDQNLVAKI 174
                   S       +K  ++ +    V K+
Sbjct: 154 --------SRRVMHRDIKPANVFITATGVVKL 177

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 29/185 (15%), Positives = 65/185 (35%), Gaps = 49/185 (26%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIR--CLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHC 89
           GEGS G+    +  ++G    I+   +    S         + +++ ++H ++V      
Sbjct: 33  GEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIV----QY 88

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWI--------SEGHAWQSLTW-TQRISAAIGVA 140
            E + ++ S   ++++ +Y   G L   I         E        W  Q       + 
Sbjct: 89  RESFEENGS---LYIVMDYCEGGDLFKRINAQKGVLFQEDQILD---WFVQ-------IC 135

Query: 141 RGIQFLHTGIVPGVFSNN-----LKITDILLDQNLVAKISSYNLP-LLAENAEK----VG 190
             ++ +H                +K  +I L ++   ++  + +  +L    E     +G
Sbjct: 136 LALKHVH--------DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIG 187

Query: 191 HVTPY 195
             TPY
Sbjct: 188 --TPY 190

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 14/94 (14%)

Query: 33  GEGSKGQMYRGRL----KNGTFIAIRCLKMKKSHS---TRNFMHHIELISKL-RHCHLVS 84
           G G+ GQ+         K  T   +    +K+  +    R  M  ++++  +  H ++V+
Sbjct: 31  GRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVN 90

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI 118
            LG C +          + +I E+   G L +++
Sbjct: 91  LLGACTK------PGGPLMVIVEFCKFGNLSTYL 118

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 27/148 (18%), Positives = 63/148 (42%), Gaps = 11/148 (7%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKK-SHSTRNFMHH-IELISKLRHCHLVSALGHC 89
           G GS G+  + R   +G  +  + L     + + +  +   + L+ +L+H ++V      
Sbjct: 15  GTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVR----Y 70

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRI-SAAIGVARGIQFLHT 148
           ++   D ++ + ++++ EY   G L S I++G   +     + +      +   ++  H 
Sbjct: 71  YDRIIDRTN-TTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHR 129

Query: 149 GIVPG--VFSNNLKITDILLDQNLVAKI 174
               G  V   +LK  ++ LD     K+
Sbjct: 130 RSDGGHTVLHRDLKPANVFLDGKQNVKL 157

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 30/146 (20%), Positives = 69/146 (47%), Gaps = 19/146 (13%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G+G+ G +Y    +  G  +AIR + +++       ++ I ++ + ++ ++V+ L     
Sbjct: 29  GQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLD---- 84

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAI--GVARGIQFLHTG 149
            Y        ++++ EY+  G+L   ++E      +   Q I AA+     + ++FLH+ 
Sbjct: 85  SYLVG---DELWVVMEYLAGGSLTDVVTET----CMDEGQ-I-AAVCRECLQALEFLHSN 135

Query: 150 IVPGVFSNNLKITDILLDQNLVAKIS 175
               V   ++K  +ILL  +   K++
Sbjct: 136 ---QVIHRDIKSDNILLGMDGSVKLT 158

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 19/146 (13%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           GEGS G +   R   +G  +A++ + ++K        + + ++   +H ++V        
Sbjct: 54  GEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYK---- 109

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAI--GVARGIQFLHTG 149
            Y        ++++ E++  G L   +S+      L   Q I A +   V + + +LH  
Sbjct: 110 SYLVG---EELWVLMEFLQGGALTDIVSQV----RLNEEQ-I-ATVCEAVLQALAYLHA- 159

Query: 150 IVPGVFSNNLKITDILLDQNLVAKIS 175
              GV   ++K   ILL  +   K+S
Sbjct: 160 --QGVIHRDIKSDSILLTLDGRVKLS 183

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 32/149 (21%)

Query: 33  GEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G G  GQ+++      G  +A + +K +         + I ++++L H +L+      ++
Sbjct: 98  GGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQ----LYD 153

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWI-SEGHAWQSLTWTQRISAAIGVAR----GIQFL 146
            +   + +    L+ EYV  G L   I  E +       T+     I   +    GI+ +
Sbjct: 154 AFESKNDI---VLVMEYVDGGELFDRIIDESY-----NLTEL--DTILFMKQICEGIRHM 203

Query: 147 HT-GIV-----PGVF------SNNLKITD 163
           H   I+     P         +  +KI D
Sbjct: 204 HQMYILHLDLKPENILCVNRDAKQIKIID 232

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 24/194 (12%), Positives = 47/194 (24%), Gaps = 47/194 (24%)

Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLKNGTFI-------------------------AIRCL 56
            T        +GEG  G++++    +                              I   
Sbjct: 18  PTEKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIIS 77

Query: 57  KMKKSHSTRNFMHHIELISKLRHCHLV-----SALGHCFECY----------FDDSSVSR 101
           K     S        E    L   H V       L   ++ Y           D     +
Sbjct: 78  KELSLLSGEVCNRT-EGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQ 136

Query: 102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKI 161
           +F++ E+   G       E    +  +     S    +   +              +L  
Sbjct: 137 LFIVLEFEFGGIDL----EQMRTKLSSLATAKSILHQLTASLAVAEA--SLRFEHRDLHW 190

Query: 162 TDILLDQNLVAKIS 175
            ++LL +  + K+ 
Sbjct: 191 GNVLLKKTSLKKLH 204

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 33/153 (21%), Positives = 67/153 (43%), Gaps = 25/153 (16%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHH----IELISKLRHCHLVSALG 87
           GEGS G++      +     A++ LK KK     N   +    I+L+ +LRH +++    
Sbjct: 14  GEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVI---- 69

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGT--LRSWISEG--HAWQSLTW-TQRISAAIGVARG 142
              +  +++    +++++ EY   G   +   + E      Q+  +  Q I        G
Sbjct: 70  QLVDVLYNEEK-QKMYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLID-------G 121

Query: 143 IQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 175
           +++LH+    G+   ++K  ++LL      KIS
Sbjct: 122 LEYLHS---QGIVHKDIKPGNLLLTTGGTLKIS 151

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 23/158 (14%), Positives = 54/158 (34%), Gaps = 24/158 (15%)

Query: 25  NFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLV 83
           +F     +G G++G +    + +   +A++ +  +           ++L+ +   H +++
Sbjct: 25  SFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADR---EVQLLRESDEHPNVI 81

Query: 84  SALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGI 143
                 F    D       ++  E     TL+ ++ +            +        G+
Sbjct: 82  ----RYFCTEKDRQFQ---YIAIELCA-ATLQEYVEQKDFAHLGLEPITLLQQT--TSGL 131

Query: 144 QFLHT-GIV-----PGVFSNNLKITDILLDQNLVAKIS 175
             LH+  IV     P     N+ I+       + A IS
Sbjct: 132 AHLHSLNIVHRDLKPH----NILISMPNAHGKIKAMIS 165

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 22/144 (15%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMH-HIELISKLRHCHLVSALGHCFE 91
           G GS G +++ +L     +AI     KK    + F +  ++++  ++H ++V  L   F 
Sbjct: 49  GNGSFGVVFQAKLVESDEVAI-----KKVLQDKRFKNRELQIMRIVKHPNVVD-LKAFFY 102

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIG------VARGIQF 145
              D      + L+ EYVP  T+       H  +     Q +   +       + R + +
Sbjct: 103 SNGDKKDEVFLNLVLEYVPE-TVYRASR--HYAKL---KQTMPMLLIKLYMYQLLRSLAY 156

Query: 146 LHTGIVPGVFSNNLKITDILLDQN 169
           +H+    G+   ++K  ++LLD  
Sbjct: 157 IHSI---GICHRDIKPQNLLLDPP 177

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 30/148 (20%), Positives = 57/148 (38%), Gaps = 30/148 (20%)

Query: 33  GEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G G+ G ++R   +  G   A + +              I+ +S LRH  LV+      +
Sbjct: 166 GTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVN----LHD 221

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVAR----GIQFLH 147
            + DD+ +    +I+E++  G L   +++    +    ++    A+   R    G+  +H
Sbjct: 222 AFEDDNEM---VMIYEFMSGGELFEKVAD----EHNKMSED--EAVEYMRQVCKGLCHMH 272

Query: 148 T-GIV-----PGVF------SNNLKITD 163
               V     P         SN LK+ D
Sbjct: 273 ENNYVHLDLKPENIMFTTKRSNELKLID 300

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 32/149 (21%)

Query: 33  GEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G G+ G ++R   K  G     + +            + I ++++L H  L++      +
Sbjct: 60  GSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLIN----LHD 115

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWI-SEGHAWQSLTWTQRISAAIGVAR----GIQFL 146
            + D   +    LI E++  G L   I +E +       ++     I   R    G++ +
Sbjct: 116 AFEDKYEM---VLILEFLSGGELFDRIAAEDY-----KMSEA--EVINYMRQACEGLKHM 165

Query: 147 HT-GIV-----PGVF------SNNLKITD 163
           H   IV     P         ++++KI D
Sbjct: 166 HEHSIVHLDIKPENIMCETKKASSVKIID 194

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 35/171 (20%), Positives = 78/171 (45%), Gaps = 24/171 (14%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G+G+ G++Y+ +  + G   A + ++ K      +++  IE+++   H ++V        
Sbjct: 28  GDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVK----LLG 83

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAI--GVARGIQFLHTG 149
            Y+ D    +++++ E+ P G + + + E    + LT  Q I   +   +   + FLH+ 
Sbjct: 84  AYYHD---GKLWIMIEFCPGGAVDAIMLELD--RGLTEPQ-I-QVVCRQMLEALNFLHSK 136

Query: 150 IVPGVFSNNLKITDILLDQNLVAKI-----SSYNLPLLAENAEKVGHVTPY 195
               +   +LK  ++L+      ++     S+ NL  L +    +G  TPY
Sbjct: 137 ---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIG--TPY 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.98
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.98
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.98
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.98
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.98
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.98
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.98
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.98
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.98
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.98
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.98
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.98
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.98
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.98
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.98
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.98
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.98
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.98
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.98
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.98
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.98
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.98
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.98
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.98
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.98
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.98
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.98
3bhy_A	283	Death-associated protein kinase 3; death associate	99.98
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.97
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.97
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.97
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.97
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.97
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.97
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.97
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.97
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.97
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.97
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.97
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.97
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.97
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.97
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.97
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.97
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.97
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.97
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.97
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.97
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.97
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.97
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.97
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.97
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.97
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.97
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.97
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.97
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.97
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.97
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.97
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.97
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.97
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.97
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.97
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.97
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.97
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.97
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.97
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.97
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.97
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.97
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.97
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.97
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.97
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.97
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.97
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.97
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.97
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.97
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.97
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.97
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.97
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.97
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.97
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.97
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.97
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.97
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.97
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.97
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.97
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.97
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.97
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.97
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.97
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.97
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.97
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.97
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.97
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.97
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.97
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.97
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.97
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.97
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.97
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.97
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.97
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.97
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.97
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.97
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.97
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.97
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.97
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.97
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.97
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.97
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.97
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.97
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.97
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.97
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.97
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.97
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.97
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.97
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.97
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.97
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.97
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.97
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.97
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.97
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.97
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.97
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.97
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.97
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.97
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.97
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.97
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.97
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.97
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.97
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.97
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.97
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.97
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.97
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.97
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.97
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.97
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.96
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.96
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.96
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.96
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.96
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.96
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.96
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.96
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.96
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.96
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.96
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.96
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.96
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.96
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.96
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.96
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.96
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.96
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.96
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.96
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.96
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.96
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.96
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.96
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.96
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.96
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.96
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.95
3uqc_A	286	Probable conserved transmembrane protein; structur	99.95
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.94
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.94
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.94
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.92
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.89
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.8
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.47
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.38
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	99.26
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.95
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.89
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.81
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.74
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	98.66
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.64
3ats_A	357	Putative uncharacterized protein; hypothetical pro	98.58
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.49
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	98.21
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.09
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	98.07
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	97.95
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.93
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	97.91
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	97.83
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	97.73
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	97.73
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	97.66
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	97.58
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	97.45
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	97.34
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	97.26
3mes_A	424	Choline kinase; malaria, structural genomics, stru	96.8
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	96.43
4ano_A	219	ESSB; membrane protein, membrane secretion, ESS ty	92.48
4ann_A	215	ESSB; membrane protein, membrane secretion, ESS ty	90.34
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	86.85
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	83.35

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=4.4e-43  Score=276.12  Aligned_cols=171  Identities=12%  Similarity=0.249  Sum_probs=144.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|+.++.||+|+||.||+|+.. +|+.||+|++....  ....+.+.+|++++++++||||+++++++.+       .
T Consensus        23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~-------~   95 (350)
T 4b9d_A           23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEE-------N   95 (350)
T ss_dssp             CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-------T
T ss_pred             ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEE-------C
Confidence            478999999999999999999976 79999999997654  2334678999999999999999999999876       6


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +.+|+||||++||+|.+++..... ..+++..++.|+.||+.||.|||+   .+|+||||||+|||+++++.+||+|||+
T Consensus        96 ~~~yiVmEy~~gg~L~~~i~~~~~-~~~~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGl  171 (350)
T 4b9d_A           96 GSLYIVMDYCEGGDLFKRINAQKG-VLFQEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFGI  171 (350)
T ss_dssp             TEEEEEEECCTTCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHH---TTCEETTCCGGGEEECTTCCEEECSTTE
T ss_pred             CEEEEEEeCCCCCcHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHHHEEECCCCCEEEccccc
Confidence            789999999999999999976533 457899999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccc-cccccccCccccCCCCC
Q 028629          180 PLLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      |+...... .....+||+.|||||..
T Consensus       172 a~~~~~~~~~~~~~~GT~~YmAPE~l  197 (350)
T 4b9d_A          172 ARVLNSTVELARACIGTPYYLSPEIC  197 (350)
T ss_dssp             ESCCCHHHHHHHHHHSCCTTCCHHHH
T ss_pred             ceeecCCcccccccCCCccccCHHHH
Confidence            99876543 34457899999999964

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=9e-43  Score=273.99  Aligned_cols=167  Identities=16%  Similarity=0.339  Sum_probs=151.0

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      ..|+..+.||+|+||.||+|... +|+.||||+++.......+.+.+|+.+|++++||||+++++++.+       .+.+
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~-------~~~~  146 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLV-------GDEL  146 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEE-------TTEE
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-------CCEE
Confidence            56999999999999999999986 799999999987666666778999999999999999999999876       6789


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      |+||||+++|+|.+++...    .+++..+..++.|++.||.|||+   .+|+||||||+|||+++++.+||+|||+|+.
T Consensus       147 ~ivmEy~~gg~L~~~l~~~----~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~  219 (346)
T 4fih_A          147 WVVMEFLEGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQ  219 (346)
T ss_dssp             EEEECCCTTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEEEeCCCCCcHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEECCCCCEEEecCcCcee
Confidence            9999999999999999763    48999999999999999999999   7999999999999999999999999999987


Q ss_pred             cccc-ccccccccCccccCCCCC
Q 028629          183 AENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       183 ~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      .... ......+||+.|||||..
T Consensus       220 ~~~~~~~~~~~~GTp~YmAPEvl  242 (346)
T 4fih_A          220 VSKEVPRRKSLVGTPYWMAPELI  242 (346)
T ss_dssp             CCSSSCCBCCCCSCGGGCCHHHH
T ss_pred             cCCCCCcccccccCcCcCCHHHH
Confidence            7543 445567999999999964

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=9.9e-43  Score=270.09  Aligned_cols=168  Identities=18%  Similarity=0.294  Sum_probs=149.4

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .+|+..+.||+|+||.||+|+.. +++.||+|++.+..   ....+.+.+|++++++++||||+++++++.+       .
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-------~  104 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQD-------D  104 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-------S
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-------C
Confidence            46999999999999999999976 79999999997542   3445778999999999999999999999865       6


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +++|+||||++||+|.+++...   ..+++.....++.|++.||.|||+   .+|+||||||+|||+++++.+||+|||+
T Consensus       105 ~~~yivmEy~~gG~L~~~i~~~---~~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDlKPeNILl~~~g~vKl~DFGl  178 (311)
T 4aw0_A          105 EKLYFGLSYAKNGELLKYIRKI---GSFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGT  178 (311)
T ss_dssp             SEEEEEECCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTT
T ss_pred             CEEEEEEecCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHeEEcCCCCEEEEEcCC
Confidence            7899999999999999999865   459999999999999999999999   7999999999999999999999999999


Q ss_pred             ccccccc---ccccccccCccccCCCCC
Q 028629          180 PLLAENA---EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~---~~~~~~~~~~~y~aPE~~  204 (206)
                      |+.....   ......+||+.|||||..
T Consensus       179 a~~~~~~~~~~~~~~~~GTp~YmAPEvl  206 (311)
T 4aw0_A          179 AKVLSPESKQARANSFVGTAQYVSPELL  206 (311)
T ss_dssp             CEECCTTTTCCCBCCCCSCGGGCCHHHH
T ss_pred             ceecCCCCCcccccCcccCcccCCHHHH
Confidence            9976533   234557899999999953

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=5.6e-42  Score=275.59  Aligned_cols=168  Identities=16%  Similarity=0.337  Sum_probs=151.8

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      .+.|+..+.||+|+||.||+|... +|+.||||++........+.+.+|+.+|++++||||+++++++.+       .+.
T Consensus       150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~-------~~~  222 (423)
T 4fie_A          150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLV-------GDE  222 (423)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEE-------TTE
T ss_pred             hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEE-------CCE
Confidence            357999999999999999999986 799999999987766667788999999999999999999999876       678


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      +|+||||++||+|.+++...    .+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+|+
T Consensus       223 ~~iVmEy~~gG~L~~~i~~~----~l~e~~~~~~~~qil~aL~ylH~---~~IiHRDiKp~NILl~~~g~vKl~DFGla~  295 (423)
T 4fie_A          223 LWVVMEFLEGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCA  295 (423)
T ss_dssp             EEEEEECCTTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSTTTEEECTTCCEEECCCTTCE
T ss_pred             EEEEEeCCCCCcHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHHH---CCeecccCCHHHEEEcCCCCEEEecCccce
Confidence            99999999999999999763    48999999999999999999999   799999999999999999999999999998


Q ss_pred             ccccc-ccccccccCccccCCCCC
Q 028629          182 LAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      .+... ......+||+.|||||..
T Consensus       296 ~~~~~~~~~~~~~GTp~YmAPEvl  319 (423)
T 4fie_A          296 QVSKEVPRRKSLVGTPYWMAPELI  319 (423)
T ss_dssp             ECCSSCCCBCCCEECTTTCCHHHH
T ss_pred             ECCCCCccccccccCcCcCCHHHH
Confidence            76543 445567999999999964

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=7.1e-42  Score=261.71  Aligned_cols=168  Identities=18%  Similarity=0.302  Sum_probs=133.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|+..+.||+|+||.||+|... +|+.||+|++.+..   ....+.+.+|++++++++||||+++++++.+       
T Consensus        12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-------   84 (275)
T 3hyh_A           12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKS-------   84 (275)
T ss_dssp             --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEEC-------
T ss_pred             eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE-------
Confidence            478999999999999999999976 79999999997543   3335678999999999999999999999865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+.+++||||+ +|+|.+.+...   ..+++.....++.|++.||.|||+   .+|+||||||+|||+++++.+||+|||
T Consensus        85 ~~~~~ivmEy~-~g~L~~~l~~~---~~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDiKP~NILl~~~~~vkl~DFG  157 (275)
T 3hyh_A           85 KDEIIMVIEYA-GNELFDYIVQR---DKMSEQEARRFFQQIISAVEYCHR---HKIVHRDLKPENLLLDEHLNVKIADFG  157 (275)
T ss_dssp             SSEEEEEEECC-CEEHHHHHHHS---CSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCTTTEEECTTCCEEECCSS
T ss_pred             CCEEEEEEeCC-CCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCChHHeEECCCCCEEEeecC
Confidence            67899999999 67999998776   459999999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccccccccccCccccCCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +|+...........+||+.|||||..
T Consensus       158 la~~~~~~~~~~~~~GT~~Y~APE~~  183 (275)
T 3hyh_A          158 LSNIMTDGNFLKTSCGSPNYAAPEVI  183 (275)
T ss_dssp             CC---------------CTTSCHHHH
T ss_pred             CCeecCCCCccCCeeECcccCChhhh
Confidence            99988776666678999999999964

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=2.8e-41  Score=262.04  Aligned_cols=179  Identities=16%  Similarity=0.329  Sum_probs=139.3

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeecccccccccc-----
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFD-----   95 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~-----   95 (206)
                      .++|+..+.||+|+||.||+|+.. +|+.||+|+++.... ...+.+.+|+++|++++||||+++++++......     
T Consensus         4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~   83 (299)
T 4g31_A            4 LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP   83 (299)
T ss_dssp             HHHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred             chhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence            456999999999999999999976 799999999976543 3346788999999999999999999988652210     


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                      ......+|++|||+++|+|.+++.........++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+||+
T Consensus        84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~---~~IiHRDlKp~NILl~~~~~vKl~  160 (299)
T 4g31_A           84 SSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHS---KGLMHRDLKPSNIFFTMDDVVKVG  160 (299)
T ss_dssp             ---CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEEC
T ss_pred             cCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHH---CcCccccCcHHHeEECCCCcEEEc
Confidence            11234589999999999999999876544456677789999999999999999   799999999999999999999999


Q ss_pred             cCCcccccccccc-------------ccccccCccccCCCCC
Q 028629          176 SYNLPLLAENAEK-------------VGHVTPYSGSINPTNS  204 (206)
Q Consensus       176 df~~a~~~~~~~~-------------~~~~~~~~~y~aPE~~  204 (206)
                      |||+|+.......             ....+||+.|||||..
T Consensus       161 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~  202 (299)
T 4g31_A          161 DFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQI  202 (299)
T ss_dssp             CCCCC--------------------------CCCTTSCHHHH
T ss_pred             cCccceecCCCccccccccccccccccCCcccCccccCHHHH
Confidence            9999987654322             2235799999999953

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=1.8e-41  Score=262.86  Aligned_cols=172  Identities=23%  Similarity=0.409  Sum_probs=146.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      .++|...+.||+|+||.||+|.+.      ++..||+|+++.......+++.+|+++|++++||||++++++|.+     
T Consensus        12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~-----   86 (299)
T 4asz_A           12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVE-----   86 (299)
T ss_dssp             GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-----
T ss_pred             HHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEee-----
Confidence            467889999999999999999863      467899999986655556789999999999999999999999976     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCC----------CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEe
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGH----------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL  166 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~  166 (206)
                        .+.+++||||+++|+|.+++....          ....+++..++.++.|++.||.|||+   .+|+||||||+|||+
T Consensus        87 --~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDlKp~NILl  161 (299)
T 4asz_A           87 --GDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLV  161 (299)
T ss_dssp             --SSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEE
T ss_pred             --CCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCccCHhhEEE
Confidence              567999999999999999997532          12468999999999999999999999   799999999999999


Q ss_pred             cCCCceeEccCCccccccccc---cccccccCccccCCCCC
Q 028629          167 DQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       167 ~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      ++++.+||+|||+|+......   ......+|+.|||||..
T Consensus       162 ~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~  202 (299)
T 4asz_A          162 GENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESI  202 (299)
T ss_dssp             CGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHH
T ss_pred             CCCCcEEECCcccceecCCCCceeecCceecChhhcCHHHH
Confidence            999999999999998765432   23335688999999953

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=7.1e-41  Score=258.11  Aligned_cols=168  Identities=21%  Similarity=0.265  Sum_probs=142.8

Q ss_pred             cccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEE
Q 028629           27 DTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (206)
Q Consensus        27 ~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~  103 (206)
                      +..+.||+|+||.||+|... ++..||+|.+....  ....+.+.+|++++++++||||+++++++.+..   .....++
T Consensus        29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~---~~~~~~~  105 (290)
T 3fpq_A           29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTV---KGKKCIV  105 (290)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEE---TTEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeecc---CCCcEEE
Confidence            66778999999999999986 79999999997543  233467899999999999999999999875411   1235689


Q ss_pred             EEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCc--eeccCCccccEEec-CCCceeEccCCcc
Q 028629          104 LIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG--VFSNNLKITDILLD-QNLVAKISSYNLP  180 (206)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~--i~h~dl~p~nil~~-~~~~~kl~df~~a  180 (206)
                      +||||+++|+|.+++...   ..+++..+..++.|++.||.|||+   .+  |+||||||+|||++ +++.+||+|||+|
T Consensus       106 lvmEy~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~ylH~---~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla  179 (290)
T 3fpq_A          106 LVTELMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQFLHT---RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLA  179 (290)
T ss_dssp             EEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHT---SSSCCCCCCCCGGGEEESSTTSCEEECCTTGG
T ss_pred             EEEeCCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCCCEEecccChhheeEECCCCCEEEEeCcCC
Confidence            999999999999999875   468999999999999999999998   56  99999999999998 5789999999999


Q ss_pred             ccccccccccccccCccccCCCCC
Q 028629          181 LLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +.... ......+||+.|||||..
T Consensus       180 ~~~~~-~~~~~~~GTp~YmAPE~~  202 (290)
T 3fpq_A          180 TLKRA-SFAKAVIGTPEFMAPEMY  202 (290)
T ss_dssp             GGCCT-TSBEESCSSCCCCCGGGG
T ss_pred             EeCCC-CccCCcccCccccCHHHc
Confidence            86554 334557899999999964

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=7.7e-41  Score=262.55  Aligned_cols=171  Identities=22%  Similarity=0.372  Sum_probs=139.7

Q ss_pred             cCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      +++...+.||+|+||.||+|.++      ++..||||+++.......+++.+|+++|++++||||++++++|.+      
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~------  114 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTE------  114 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS------
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE------
Confidence            46777889999999999999864      477899999986655566789999999999999999999999975      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCC------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEE
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHA------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL  165 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil  165 (206)
                       .+.+++||||+++|+|.+++.....            ..++++..++.++.|++.||.|||+   .+|+||||||+|||
T Consensus       115 -~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLKp~NIL  190 (329)
T 4aoj_A          115 -GRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG---LHFVHRDLATRNCL  190 (329)
T ss_dssp             -SSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEE
T ss_pred             -CCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhc---CCeecccccHhhEE
Confidence             5679999999999999999875321            1358999999999999999999999   79999999999999


Q ss_pred             ecCCCceeEccCCccccccccc---cccccccCccccCCCCC
Q 028629          166 LDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       166 ~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      +++++.+||+|||+|+......   ......+|+.|||||..
T Consensus       191 l~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~  232 (329)
T 4aoj_A          191 VGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESI  232 (329)
T ss_dssp             EETTTEEEECCCC----------------CCCCGGGCCHHHH
T ss_pred             ECCCCcEEEcccccceeccCCCcceecCcccccccccChhhh
Confidence            9999999999999998764332   23346789999999963

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=3.5e-41  Score=261.62  Aligned_cols=169  Identities=20%  Similarity=0.361  Sum_probs=140.9

Q ss_pred             HHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           20 EEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        20 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      +...+++...+.||+|+||.||+|++++  .||+|+++...  ....+.+.+|+.++++++||||+++++++..      
T Consensus        32 ei~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~------  103 (307)
T 3omv_A           32 EIEASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK------  103 (307)
T ss_dssp             BCCTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS------
T ss_pred             EEcHHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC------
Confidence            3456788899999999999999998753  59999987443  2335678999999999999999999998743      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                        +.+++||||+++|+|.+++....  ..+++..+..++.|++.||.|||+   .+|+||||||+|||+++++.+||+||
T Consensus       104 --~~~~iVmEy~~gGsL~~~l~~~~--~~l~~~~~~~i~~qia~gL~yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DF  176 (307)
T 3omv_A          104 --DNLAIVTQWCEGSSLYKHLHVQE--TKFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDF  176 (307)
T ss_dssp             --SSCEEEEECCSSCBHHHHHHTSC--CCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCSSSEEEETTEEEEECCC
T ss_pred             --CeEEEEEEcCCCCCHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHHHH---CCccCCccCHHHEEECCCCcEEEeec
Confidence              45899999999999999997643  458999999999999999999999   79999999999999999999999999


Q ss_pred             Ccccccccc---ccccccccCccccCCCC
Q 028629          178 NLPLLAENA---EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       178 ~~a~~~~~~---~~~~~~~~~~~y~aPE~  203 (206)
                      |+|+.....   .......||+.|||||.
T Consensus       177 Gla~~~~~~~~~~~~~~~~GT~~ymAPE~  205 (307)
T 3omv_A          177 GLATVKSRWSGSQQVEQPTGSVLWMAPEV  205 (307)
T ss_dssp             SSCBC------------CCCCTTSCCHHH
T ss_pred             cCceecccCCcceeecccccCCCccCHHH
Confidence            999876532   23345689999999995

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=6.3e-41  Score=262.70  Aligned_cols=164  Identities=16%  Similarity=0.235  Sum_probs=140.7

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      .+.|...++||+|+||.||+|+.. +|+.||+|+++.+...     .+|+.++++++||||+++++++.+       .+.
T Consensus        57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~-----~~E~~il~~l~HpnIV~l~~~~~~-------~~~  124 (336)
T 4g3f_A           57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFR-----VEELVACAGLSSPRIVPLYGAVRE-------GPW  124 (336)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC-----THHHHTTTTCCCTTBCCEEEEEEE-------TTE
T ss_pred             hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHhH-----HHHHHHHHhCCCCCCCcEEEEEEE-------CCE
Confidence            356788889999999999999986 7999999999865332     359999999999999999999876       678


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC-ceeEccCCcc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-VAKISSYNLP  180 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~-~~kl~df~~a  180 (206)
                      +|+||||++||+|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+|||++.++ .+||+|||+|
T Consensus       125 ~~ivmEy~~gg~L~~~l~~~---~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~~vKl~DFGla  198 (336)
T 4g3f_A          125 VNIFMELLEGGSLGQLIKQM---GCLPEDRALYYLGQALEGLEYLHT---RRILHGDVKADNVLLSSDGSRAALCDFGHA  198 (336)
T ss_dssp             EEEEECCCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCCGGGEEECTTSCCEEECCCTTC
T ss_pred             EEEEEeccCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCceecccCHHHEEEeCCCCEEEEeeCCCC
Confidence            99999999999999999865   458999999999999999999999   7999999999999999887 6999999999


Q ss_pred             ccccccc------cccccccCccccCCCCC
Q 028629          181 LLAENAE------KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~------~~~~~~~~~~y~aPE~~  204 (206)
                      +......      .....+||+.|||||..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~  228 (336)
T 4g3f_A          199 LCLQPDGLGKSLLTGDYIPGTETHMAPEVV  228 (336)
T ss_dssp             EEC------------CCCCCCGGGCCHHHH
T ss_pred             eEccCCCcccceecCCccccCccccCHHHH
Confidence            8765432      22335799999999964

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=1.8e-41  Score=262.75  Aligned_cols=169  Identities=18%  Similarity=0.258  Sum_probs=140.6

Q ss_pred             hcCCcccceeccCcceeEEEEEEe----CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~----~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      .++|+..+.||+|+||.||+|+..    +++.||+|+++...  ......+.+|++++++++||||+++++++.+     
T Consensus        23 p~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-----   97 (304)
T 3ubd_A           23 PSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQT-----   97 (304)
T ss_dssp             GGGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEE-----
T ss_pred             ccccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE-----
Confidence            367999999999999999999863    47899999997543  2233467889999999999999999999876     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                        .+.+|+||||++||+|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+|||+++++.+||+|
T Consensus        98 --~~~~~ivmEy~~gg~L~~~l~~~---~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~D  169 (304)
T 3ubd_A           98 --EGKLYLILDFLRGGDLFTRLSKE---VMFTEEDVKFYLAELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTD  169 (304)
T ss_dssp             --TTEEEEEECCCTTCEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECTTSCEEEES
T ss_pred             --CCEEEEEEEcCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHeEEcCCCCEEecc
Confidence              67899999999999999999875   458999999999999999999999   7999999999999999999999999


Q ss_pred             CCccccccc-cccccccccCccccCCCCC
Q 028629          177 YNLPLLAEN-AEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~-~~~~~~~~~~~~y~aPE~~  204 (206)
                      ||+|+.... .......+||+.|||||..
T Consensus       170 FGla~~~~~~~~~~~~~~GT~~YmAPE~~  198 (304)
T 3ubd_A          170 FGLSKESIDHEKKAYSFCGTVEYMAPEVV  198 (304)
T ss_dssp             SEEEEC-----CCCCSCCCCGGGCCHHHH
T ss_pred             cccceeccCCCccccccccCcccCCHHHh
Confidence            999986543 3445567899999999953

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=3.2e-40  Score=256.84  Aligned_cols=172  Identities=23%  Similarity=0.313  Sum_probs=144.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      ..+++..+.||+|+||.||+|.+.      ++..||||+++... ....+++.+|+.++++++||||++++++|.+    
T Consensus        25 ~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~----  100 (308)
T 4gt4_A           25 LSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTK----  100 (308)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred             HHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEE----
Confidence            345777889999999999999963      46789999997543 3345789999999999999999999999975    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCC-------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHA-------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKIT  162 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~-------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~  162 (206)
                         .+.+++||||+++|+|.+++.....             ...+++..+..++.||+.||.|||+   .+|+||||||+
T Consensus       101 ---~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLK~~  174 (308)
T 4gt4_A          101 ---DQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS---HHVVHKDLATR  174 (308)
T ss_dssp             ---SSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGG
T ss_pred             ---CCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CCCCCCCcccc
Confidence               5678999999999999999965321             1358999999999999999999999   79999999999


Q ss_pred             cEEecCCCceeEccCCccccccccc---cccccccCccccCCCCC
Q 028629          163 DILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       163 nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      ||||++++.+||+|||+|+......   ......||+.|||||..
T Consensus       175 NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l  219 (308)
T 4gt4_A          175 NVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAI  219 (308)
T ss_dssp             GEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHH
T ss_pred             ceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHH
Confidence            9999999999999999998764432   33446788999999953

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=1.6e-39  Score=252.87  Aligned_cols=173  Identities=19%  Similarity=0.303  Sum_probs=137.6

Q ss_pred             hcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      .++|...+.||+|+||.||+|++ +|+.||||+++... ........|+..+.+++||||+++++++...   +.....+
T Consensus         2 ar~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~-~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~---~~~~~~~   76 (303)
T 3hmm_A            2 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE-ERSWFREAEIYQTVMLRHENILGFIAADNKD---NGTWTQL   76 (303)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEE---CSSSEEE
T ss_pred             CcEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccc-hhhHHHHHHHHHHhcCCCCCCCcEEEEEEec---CCCceEE
Confidence            35688889999999999999998 58999999997432 1122233466667788999999999998651   1122468


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcC-----CCCceeccCCccccEEecCCCceeEccC
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTG-----IVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-----~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      ++||||+++|+|.+++...    .+++..+..++.|++.||.|||+.     ...+|+||||||+|||+++++.+||+||
T Consensus        77 ~lV~Ey~~~gsL~~~l~~~----~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DF  152 (303)
T 3hmm_A           77 WLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADL  152 (303)
T ss_dssp             EEEEECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCC
T ss_pred             EEEecCCCCCcHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeC
Confidence            9999999999999999864    489999999999999999999973     1238999999999999999999999999


Q ss_pred             Cccccccccc-----cccccccCccccCCCCC
Q 028629          178 NLPLLAENAE-----KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~-----~~~~~~~~~~y~aPE~~  204 (206)
                      |+|+......     ......||++|||||..
T Consensus       153 Gla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l  184 (303)
T 3hmm_A          153 GLAVRHDSATDTIDIAPNHRVGTKRYMAPEVL  184 (303)
T ss_dssp             TTCEEEETTTTEESCC-----CCGGGCCHHHH
T ss_pred             CCCccccCCCCceeeecccccccccccCHHHh
Confidence            9998765433     22335799999999953

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=3.2e-39  Score=255.33  Aligned_cols=181  Identities=20%  Similarity=0.348  Sum_probs=150.9

Q ss_pred             eCHHHHHHHhcCCcccceeccCcceeEEEEEEeC------CcEEEEEEeecCCC-ccHHHHHHHHHHHhccCC-Cceeee
Q 028629           14 FSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKN------GTFIAIRCLKMKKS-HSTRNFMHHIELISKLRH-CHLVSA   85 (206)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~------~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h-~~i~~~   85 (206)
                      +...+|+...++|+..+.||+|+||.||+|.+..      ++.||+|.+..... ...+.+.+|+++|.++.| |||+++
T Consensus        54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l  133 (353)
T 4ase_A           54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL  133 (353)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence            4456677778899999999999999999999752      35799999975443 334678999999999965 899999


Q ss_pred             ccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCC-------------CcccCHHHHHHHHHHHHHHHHHHhcCCCC
Q 028629           86 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA-------------WQSLTWTQRISAAIGVARGIQFLHTGIVP  152 (206)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~  152 (206)
                      +++|..      ..+.+++||||+++|+|.+++.....             ...+++..+..++.||+.||.|||+   .
T Consensus       134 ~g~~~~------~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~---~  204 (353)
T 4ase_A          134 LGACTK------PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---R  204 (353)
T ss_dssp             EEEECC------TTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHH---T
T ss_pred             EEEEEe------cCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhh---C
Confidence            998864      23468999999999999999975321             1358999999999999999999999   7


Q ss_pred             ceeccCCccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCC
Q 028629          153 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       153 ~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                      +|+||||||+|||+++++.+||+|||+|+......   ......+|+.|||||.
T Consensus       205 ~iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~  258 (353)
T 4ase_A          205 KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPET  258 (353)
T ss_dssp             TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHH
T ss_pred             CeecCccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHH
Confidence            99999999999999999999999999998764332   3445678999999995

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.7e-38  Score=253.08  Aligned_cols=172  Identities=14%  Similarity=0.261  Sum_probs=144.5

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ++|+.++.||+|+||.||+|+.. +|+.||||+++...  ....+.+.+|+++|+.++||||+++++++..... ....+
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~-~~~~~  132 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVP-YGEFK  132 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSC-TTTCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccc-cccCC
Confidence            57999999999999999999986 89999999997543  2334578899999999999999999998754221 11245


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      .+|+||||++ |+|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+|
T Consensus       133 ~~~ivmE~~~-g~L~~~i~~~---~~l~~~~~~~~~~qil~al~ylH~---~~iiHRDlKP~NIl~~~~~~~Ki~DFGla  205 (398)
T 4b99_A          133 SVYVVLDLME-SDLHQIIHSS---QPLTLEHVRYFLYQLLRGLKYMHS---AQVIHRDLKPSNLLVNENCELKIGDFGMA  205 (398)
T ss_dssp             CEEEEEECCS-EEHHHHHTSS---SCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             EEEEEEeCCC-CCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CcCcCCCcCccccccCCCCCEEEeeccee
Confidence            7999999996 5899988765   569999999999999999999999   79999999999999999999999999999


Q ss_pred             cccccc-----ccccccccCccccCCCC
Q 028629          181 LLAENA-----EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       181 ~~~~~~-----~~~~~~~~~~~y~aPE~  203 (206)
                      +.+...     ......+||+.|||||.
T Consensus       206 ~~~~~~~~~~~~~~~~~~GT~~Y~APEv  233 (398)
T 4b99_A          206 RGLCTSPAEHQYFMTEYVATRWYRAPEL  233 (398)
T ss_dssp             BCC-------CCCCCSSCCCCTTCCHHH
T ss_pred             eecccCccccccccccceeChHhcCHHH
Confidence            865432     23345789999999995

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=1.1e-37  Score=261.59  Aligned_cols=168  Identities=21%  Similarity=0.293  Sum_probs=144.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHH---HHHHHhccCCCceeeecccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMH---HIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~---e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      .++|++.+.||+|+||.||+|+.. +|+.||+|++++..   ........+   ++.+++.++||||+++++++.+    
T Consensus       188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~----  263 (689)
T 3v5w_A          188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHT----  263 (689)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEEC----
T ss_pred             hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEE----
Confidence            368999999999999999999987 79999999997542   222233333   4567778899999999999876    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                         .+.+|+||||++||+|.+++...   ..+++.....++.||+.||.|||+   .+|+||||||+|||++++|.+||+
T Consensus       264 ---~~~lylVmEy~~GGdL~~~l~~~---~~l~E~~a~~y~~qIl~aL~yLH~---~gIiHRDLKPeNILld~~G~vKL~  334 (689)
T 3v5w_A          264 ---PDKLSFILDLMNGGDLHYHLSQH---GVFSEADMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRIS  334 (689)
T ss_dssp             ---SSEEEEEECCCCSCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECTTSCEEEC
T ss_pred             ---CCEEEEEEecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCchHHeEEeCCCCEEec
Confidence               67899999999999999999875   458999999999999999999999   799999999999999999999999


Q ss_pred             cCCccccccccccccccccCccccCCCCC
Q 028629          176 SYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       176 df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |||+|+..... .....+||+.|||||..
T Consensus       335 DFGlA~~~~~~-~~~t~~GTp~YmAPEvl  362 (689)
T 3v5w_A          335 DLGLACDFSKK-KPHASVGTHGYMAPEVL  362 (689)
T ss_dssp             CCTTCEECSSC-CCCSCCSCGGGCCHHHH
T ss_pred             ccceeeecCCC-CCCCccCCcCccCHHHH
Confidence            99999877553 34557999999999964

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=1.7e-37  Score=259.85  Aligned_cols=170  Identities=18%  Similarity=0.279  Sum_probs=152.6

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      .++|++.+.||+|+||.||+|..+ +|+.||+|.+........+.+.+|+.+|+.++||||+++++++.+       .+.
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~-------~~~  228 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFED-------DNE  228 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEC-------SSE
T ss_pred             ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEE-------CCE
Confidence            468999999999999999999986 799999999987665566788999999999999999999999865       678


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC--CceeEccCCc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN--LVAKISSYNL  179 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~--~~~kl~df~~  179 (206)
                      ++++|||++||+|.+++....  ..+++..+..++.||+.||.|||+   .+|+||||||+|||++.+  +.+||+|||+
T Consensus       229 ~~iv~E~~~gg~L~~~i~~~~--~~l~e~~~~~~~~qi~~al~ylH~---~~iiHRDlKp~Nill~~~~~~~vKl~DFG~  303 (573)
T 3uto_A          229 MVMIYEFMSGGELFEKVADEH--NKMSEDEAVEYMRQVCKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFGL  303 (573)
T ss_dssp             EEEEEECCCCCBHHHHHTCTT--SCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCSS
T ss_pred             EEEEEeecCCCcHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCChhhccccCCCCCCEEEeeccc
Confidence            999999999999999886543  358999999999999999999999   799999999999999854  8999999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |+.+.........+||+.|||||..
T Consensus       304 a~~~~~~~~~~~~~GT~~y~APEv~  328 (573)
T 3uto_A          304 TAHLDPKQSVKVTTGTAEFAAPEVA  328 (573)
T ss_dssp             CEECCTTSEEEEECSSGGGCCHHHH
T ss_pred             eeEccCCCceeeeEECccccCHHHh
Confidence            9998877766778999999999953

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=1.2e-36  Score=241.75  Aligned_cols=166  Identities=11%  Similarity=0.208  Sum_probs=139.9

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe----CCcEEEEEEeecCCCccHHHHHHHHHHHhcc-CCCceeeecccccccccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFD   95 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~   95 (206)
                      ...++|++.+.||+|+||.||+|+.+    +++.||+|.+....  ....+.+|+++|+.+ .||||+++++++.+    
T Consensus        18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~----   91 (361)
T 4f9c_A           18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRK----   91 (361)
T ss_dssp             GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEE----
T ss_pred             CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEE----
Confidence            45678999999999999999999864    46789999986443  345678899999998 69999999998866    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC-CceeE
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN-LVAKI  174 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~-~~~kl  174 (206)
                         .+.+++||||+++++|.+++..      +++..+..++.|++.||.|||+   .+|+||||||+|||++.+ +.+||
T Consensus        92 ---~~~~~lvmE~~~g~~L~~~~~~------l~~~~~~~~~~qll~al~ylH~---~gIiHRDiKPeNiLl~~~~~~~kl  159 (361)
T 4f9c_A           92 ---NDHVVIAMPYLEHESFLDILNS------LSFQEVREYMLNLFKALKRIHQ---FGIVHRDVKPSNFLYNRRLKKYAL  159 (361)
T ss_dssp             ---TTEEEEEEECCCCCCHHHHHTT------CCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEEEE
T ss_pred             ---CCEEEEEEeCCCcccHHHHHcC------CCHHHHHHHHHHHHHHHHHHHH---CCeEeCcCCHHHeEEeCCCCeEEE
Confidence               6789999999999999998842      7889999999999999999999   799999999999999976 89999


Q ss_pred             ccCCccccccccc-----------------------------cccccccCccccCCCCC
Q 028629          175 SSYNLPLLAENAE-----------------------------KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       175 ~df~~a~~~~~~~-----------------------------~~~~~~~~~~y~aPE~~  204 (206)
                      +|||+|+......                             .....+||++|+|||..
T Consensus       160 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l  218 (361)
T 4f9c_A          160 VDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVL  218 (361)
T ss_dssp             CCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHH
T ss_pred             CcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHH
Confidence            9999997543321                             12235799999999953

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=3.7e-35  Score=230.80  Aligned_cols=170  Identities=16%  Similarity=0.278  Sum_probs=151.5

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ...++|+..+.||+|+||.||+|... +|+.||+|.+....  ....+.+.+|+++++.++||||+++++++..      
T Consensus        12 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~------   85 (328)
T 3fe3_A           12 PHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIET------   85 (328)
T ss_dssp             CEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEC------
T ss_pred             CccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE------
Confidence            34678999999999999999999985 89999999997543  2345678899999999999999999998865      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       .+..+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.+||+||
T Consensus        86 -~~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~NIll~~~~~~kl~DF  158 (328)
T 3fe3_A           86 -EKTLYLIMEYASGGEVFDYLVAH---GRMKEKEARSKFRQIVSAVQYCHQ---KRIVHRDLKAENLLLDADMNIKIADF  158 (328)
T ss_dssp             -SSEEEEEECCCTTCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECST
T ss_pred             -CCEEEEEEECCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCEeccCCCHHHEEEcCCCCEEEeec
Confidence             66899999999999999998765   358999999999999999999999   79999999999999999999999999


Q ss_pred             CccccccccccccccccCccccCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      |++.............++++|+|||.
T Consensus       159 G~a~~~~~~~~~~~~~gt~~y~aPE~  184 (328)
T 3fe3_A          159 GFSNEFTVGGKLDAFCGAPPYAAPEL  184 (328)
T ss_dssp             TCCGGGSSSCGGGTTSSSGGGCCHHH
T ss_pred             cCceecCCCCccccccCCcceeCccc
Confidence            99988776666667889999999995

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=5.3e-34  Score=221.25  Aligned_cols=168  Identities=17%  Similarity=0.311  Sum_probs=149.8

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ..++|+..+.||+|+||.||+|... +++.||+|.+........+.+.+|+.++++++||||+++++++..       .+
T Consensus        18 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------~~   90 (297)
T 3fxz_A           18 PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-------GD   90 (297)
T ss_dssp             GGGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEE-------TT
T ss_pred             hhhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEE-------CC
Confidence            3578999999999999999999965 799999999987666667788999999999999999999998876       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..+++|||+++++|.+++...    .+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++
T Consensus        91 ~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~  163 (297)
T 3fxz_A           91 ELWVVMEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFC  163 (297)
T ss_dssp             EEEEEEECCTTCBHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTC
T ss_pred             EEEEEEECCCCCCHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHh---CCceeCCCCHHHEEECCCCCEEEeeCCCc
Confidence            799999999999999999764    48899999999999999999999   79999999999999999999999999999


Q ss_pred             cccccc-ccccccccCccccCCCC
Q 028629          181 LLAENA-EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~y~aPE~  203 (206)
                      ...... .......++..|+|||.
T Consensus       164 ~~~~~~~~~~~~~~gt~~y~aPE~  187 (297)
T 3fxz_A          164 AQITPEQSKRSTMVGTPYWMAPEV  187 (297)
T ss_dssp             EECCSTTCCBCCCCSCGGGCCHHH
T ss_pred             eecCCcccccCCccCCcCccChhh
Confidence            876543 33445689999999995

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=3e-34  Score=229.80  Aligned_cols=169  Identities=15%  Similarity=0.295  Sum_probs=151.7

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|...+.||+|+||.||+|... +++.||+|.+....   ....+.+.+|+.+++.++||||+++++++.+       
T Consensus        14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~-------   86 (384)
T 4fr4_A           14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQD-------   86 (384)
T ss_dssp             GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-------
T ss_pred             hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEe-------
Confidence            467999999999999999999976 78999999997542   3445678899999999999999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ....+++|||+.+++|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.++|+|||
T Consensus        87 ~~~~~lv~e~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~vkL~DFG  160 (384)
T 4fr4_A           87 EEDMFMVVDLLLGGDLRYHLQQN---VHFKEETVKLFICELVMALDYLQN---QRIIHRDMKPDNILLDEHGHVHITDFN  160 (384)
T ss_dssp             SSEEEEEECCCTTEEHHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             CCEEEEEEecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCcHHHeEECCCCCEEEeccc
Confidence            56899999999999999999875   458999999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccccccccccCccccCCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ++.............||+.|+|||..
T Consensus       161 ~a~~~~~~~~~~~~~gt~~Y~aPE~~  186 (384)
T 4fr4_A          161 IAAMLPRETQITTMAGTKPYMAPEMF  186 (384)
T ss_dssp             TCEECCTTCCBCCCCSCGGGCCGGGT
T ss_pred             eeeeccCCCceeccCCCccccCCeee
Confidence            99988766666778999999999975

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=3.7e-34  Score=225.82  Aligned_cols=169  Identities=18%  Similarity=0.301  Sum_probs=148.3

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC---CCccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|+..+.||+|+||.||+|... +++.||+|++...   .......+.+|+.+++.++||||+++++++..       
T Consensus         4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~-------   76 (337)
T 1o6l_A            4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQT-------   76 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEEC-------
T ss_pred             hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEe-------
Confidence            467999999999999999999976 7999999999754   23445678899999999999999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+.++++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||
T Consensus        77 ~~~~~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~vkL~DFG  150 (337)
T 1o6l_A           77 HDRLCFVMEYANGGELFFHLSRE---RVFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFG  150 (337)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCT
T ss_pred             CCEEEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCcCCHHHEEECCCCCEEEeecc
Confidence            66899999999999999988765   458999999999999999999999   799999999999999999999999999


Q ss_pred             cccccc-ccccccccccCccccCCCCC
Q 028629          179 LPLLAE-NAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~-~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +++... .........||+.|+|||..
T Consensus       151 ~a~~~~~~~~~~~~~~gt~~y~aPE~~  177 (337)
T 1o6l_A          151 LCKEGISDGATMKTFCGTPEYLAPEVL  177 (337)
T ss_dssp             TCBCSCCTTCCBCCCEECGGGCCGGGG
T ss_pred             chhhcccCCCcccccccChhhCChhhh
Confidence            998643 33345557899999999964

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=5.5e-34  Score=222.15  Aligned_cols=170  Identities=21%  Similarity=0.389  Sum_probs=147.6

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      .++|...+.||+|+||.||+|... ++..||+|.+........+.+.+|++++++++|+||+++++++.+       .+.
T Consensus         9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------~~~   81 (310)
T 3s95_A            9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYK-------DKR   81 (310)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-------TTE
T ss_pred             hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEec-------CCe
Confidence            467999999999999999999986 799999999865555566789999999999999999999999876       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .+++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||||+||++++++.++|+|||++.
T Consensus        82 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~  156 (310)
T 3s95_A           82 LNFITEYIKGGTLRGIIKSMD--SQYPWSQRVSFAKDIASGMAYLHS---MNIIHRDLNSHNCLVRENKNVVVADFGLAR  156 (310)
T ss_dssp             EEEEEECCTTCBHHHHHHHCC--TTSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEECTTSCEEECCCTTCE
T ss_pred             eEEEEEecCCCcHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCcCeEEECCCCCEEEeecccce
Confidence            999999999999999998743  458999999999999999999999   799999999999999999999999999998


Q ss_pred             cccccccc---------------cccccCccccCCCCC
Q 028629          182 LAENAEKV---------------GHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~~~---------------~~~~~~~~y~aPE~~  204 (206)
                      ........               ....||..|+|||..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  194 (310)
T 3s95_A          157 LMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMI  194 (310)
T ss_dssp             ECC--------------------CCCCSCGGGCCHHHH
T ss_pred             ecccccccccccccccccccccccccCCCcceeCHHHh
Confidence            76543221               145789999999953

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=9.4e-34  Score=225.43  Aligned_cols=169  Identities=18%  Similarity=0.282  Sum_probs=149.6

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc------cHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH------STRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      .++|...+.||+|+||.||+|... +|..||+|.+......      ..+.+.+|+.++++++||||+++++++.+    
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~----   86 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYEN----   86 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEEC----
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEe----
Confidence            567999999999999999999986 7999999999765321      34678999999999999999999998865    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC----c
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL----V  171 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~----~  171 (206)
                         ....+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+|+|+||||+||++++++    .
T Consensus        87 ---~~~~~lv~e~~~gg~L~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDlkp~NIll~~~~~~~~~  157 (361)
T 2yab_A           87 ---RTDVVLILELVSGGELFDFLAQK---ESLSEEEATSFIKQILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIPH  157 (361)
T ss_dssp             ---SSEEEEEEECCCSCBHHHHHTTC---SCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCTTSSSCC
T ss_pred             ---CCEEEEEEEcCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEeCCCCCccC
Confidence               66899999999999999999765   468999999999999999999999   7999999999999998776    7


Q ss_pred             eeEccCCccccccccccccccccCccccCCCCC
Q 028629          172 AKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       172 ~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +||+|||++.............||++|+|||..
T Consensus       158 vkl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~  190 (361)
T 2yab_A          158 IKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIV  190 (361)
T ss_dssp             EEECCCSSCEECCTTCCCCCCCSCGGGCCHHHH
T ss_pred             EEEEecCCceEcCCCCccccCCCCccEECchHH
Confidence            999999999987766555667899999999953

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=1.3e-33  Score=221.45  Aligned_cols=179  Identities=17%  Similarity=0.338  Sum_probs=146.9

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeecccccccccc----
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD----   95 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~----   95 (206)
                      ..++|+..+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+.++++++||||+++++++......    
T Consensus         4 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~   83 (332)
T 3qd2_B            4 YLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQE   83 (332)
T ss_dssp             HHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHH
T ss_pred             hhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhh
Confidence            3567999999999999999999987 79999999997544 34457789999999999999999999987542100    


Q ss_pred             ----------------------------------------------CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCH
Q 028629           96 ----------------------------------------------DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTW  129 (206)
Q Consensus        96 ----------------------------------------------~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~  129 (206)
                                                                    .......+++|||+++++|.+++.........++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~  163 (332)
T 3qd2_B           84 EMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREH  163 (332)
T ss_dssp             HHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCH
T ss_pred             hhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhh
Confidence                                                          0112348999999999999999987655456777


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccccc-------------cccccccCc
Q 028629          130 TQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE-------------KVGHVTPYS  196 (206)
Q Consensus       130 ~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~-------------~~~~~~~~~  196 (206)
                      ..++.++.|++.||.|||+   .+++|+||||+||+++.++.+||+|||++.......             ......+|.
T Consensus       164 ~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  240 (332)
T 3qd2_B          164 GVCLHIFIQIAEAVEFLHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTK  240 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CG
T ss_pred             HHHHHHHHHHHHHHHHHHh---CCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCc
Confidence            7899999999999999999   799999999999999999999999999998776542             223357899


Q ss_pred             cccCCCC
Q 028629          197 GSINPTN  203 (206)
Q Consensus       197 ~y~aPE~  203 (206)
                      .|+|||.
T Consensus       241 ~y~aPE~  247 (332)
T 3qd2_B          241 LYMSPEQ  247 (332)
T ss_dssp             GGSCHHH
T ss_pred             CccChHH
Confidence            9999995

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=6.6e-34  Score=228.62  Aligned_cols=169  Identities=21%  Similarity=0.308  Sum_probs=146.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhcc-CCCceeeeccccccccccCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .++|+..+.||+|+||.||+|+.. +++.||+|++.+..   ....+.+..|..++.++ +||||+++++++.+      
T Consensus        51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~------  124 (396)
T 4dc2_A           51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQT------  124 (396)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEEC------
T ss_pred             hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEE------
Confidence            468999999999999999999987 78899999997543   22334678899999887 89999999998865      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       .+.+++||||+++++|..++...   ..+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+||
T Consensus       125 -~~~~~lV~E~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~LH~---~givHrDLKp~NILl~~~g~ikL~DF  197 (396)
T 4dc2_A          125 -ESRLFFVIEYVNGGDLMFHMQRQ---RKLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDY  197 (396)
T ss_dssp             -SSEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCC
T ss_pred             -CCEEEEEEEcCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCEEeccCCHHHEEECCCCCEEEeec
Confidence             67899999999999999998765   458999999999999999999999   79999999999999999999999999


Q ss_pred             Cccccc-cccccccccccCccccCCCCC
Q 028629          178 NLPLLA-ENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~-~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |+++.. .........+||+.|+|||..
T Consensus       198 Gla~~~~~~~~~~~~~~gt~~Y~aPE~l  225 (396)
T 4dc2_A          198 GMCKEGLRPGDTTSTFCGTPNYIAPEIL  225 (396)
T ss_dssp             TTCBCCCCTTCCBCCCCBCGGGCCHHHH
T ss_pred             ceeeecccCCCccccccCCcccCCchhh
Confidence            999863 334455667899999999963

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=3.7e-34  Score=232.75  Aligned_cols=174  Identities=15%  Similarity=0.184  Sum_probs=148.3

Q ss_pred             HHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccc
Q 028629           19 LEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (206)
Q Consensus        19 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   94 (206)
                      .....++|+..+.||+|+||.||+|... +++.||+|++....   ......+.+|..++..++|+||+++++++.+   
T Consensus        69 ~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~---  145 (437)
T 4aw2_A           69 MRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD---  145 (437)
T ss_dssp             HSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC---
T ss_pred             ccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee---
Confidence            3344579999999999999999999987 68899999997531   2223447889999999999999999998865   


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeE
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI  174 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl  174 (206)
                          .+.+++||||+++|+|.+++....  ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+||
T Consensus       146 ----~~~~~lV~Ey~~gg~L~~~l~~~~--~~l~e~~~~~~~~qi~~aL~~LH~---~giiHrDLKp~NILl~~~g~vkL  216 (437)
T 4aw2_A          146 ----DNNLYLVMDYYVGGDLLTLLSKFE--DRLPEEMARFYLAEMVIAIDSVHQ---LHYVHRDIKPDNILMDMNGHIRL  216 (437)
T ss_dssp             ----SSEEEEEECCCTTCBHHHHHHTTT--TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEE
T ss_pred             ----CCEEEEEEecCCCCcHHHHHHHcc--CCCCHHHHHHHHHHHHHHHHHHHh---CCeEecccCHHHeeEcCCCCEEE
Confidence                678999999999999999997633  458999999999999999999999   79999999999999999999999


Q ss_pred             ccCCccccccccc--cccccccCccccCCCCC
Q 028629          175 SSYNLPLLAENAE--KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       175 ~df~~a~~~~~~~--~~~~~~~~~~y~aPE~~  204 (206)
                      +|||+++......  ......||++|+|||..
T Consensus       217 ~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l  248 (437)
T 4aw2_A          217 ADFGSCLKLMEDGTVQSSVAVGTPDYISPEIL  248 (437)
T ss_dssp             CCCTTCEECCTTSCEECCSCCSCGGGCCHHHH
T ss_pred             cchhhhhhcccCCCcccccccCCcCeeChHHH
Confidence            9999997665433  23346899999999953

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=1e-33  Score=222.00  Aligned_cols=188  Identities=30%  Similarity=0.575  Sum_probs=158.5

Q ss_pred             CccceeCHHHHHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeecc
Q 028629            9 PAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALG   87 (206)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~   87 (206)
                      .....+++.++....++|+..+.||+|+||.||+|...++..||+|.+.... ......+.+|+.+++.++|+||+++++
T Consensus        15 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~   94 (326)
T 3uim_A           15 GQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG   94 (326)
T ss_dssp             CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCE
T ss_pred             CccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEE
Confidence            3467889999999999999999999999999999997789999999997543 223346889999999999999999999


Q ss_pred             ccccccccCCCCceEEEEEeecCCCCHHHHHhcCCC-CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEe
Q 028629           88 HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA-WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL  166 (206)
Q Consensus        88 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~  166 (206)
                      ++..       .+..+++|||+++++|.+++..... ...+++..++.++.|++.||.|||+....+++|+||||+||++
T Consensus        95 ~~~~-------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~  167 (326)
T 3uim_A           95 FCMT-------PTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILL  167 (326)
T ss_dssp             EECC-------SSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEE
T ss_pred             EEec-------CCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEE
Confidence            9865       5678999999999999999986532 2458999999999999999999999211299999999999999


Q ss_pred             cCCCceeEccCCcccccccc--ccccccccCccccCCCC
Q 028629          167 DQNLVAKISSYNLPLLAENA--EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       167 ~~~~~~kl~df~~a~~~~~~--~~~~~~~~~~~y~aPE~  203 (206)
                      ++++.++|+|||++......  .......++.+|+|||.
T Consensus       168 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~  206 (326)
T 3uim_A          168 DEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEY  206 (326)
T ss_dssp             CTTCCEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHH
T ss_pred             CCCCCEEeccCccccccCcccccccccccCCcCccCHHH
Confidence            99999999999999876533  23334568999999995

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.7e-33  Score=220.75  Aligned_cols=169  Identities=14%  Similarity=0.192  Sum_probs=149.6

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      .++|...+.||+|+||.||+|... ++..+|+|.+... ......+.+|+.+++.++||||+++++++.+       .+.
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-------~~~   75 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNIARHRNILHLHESFES-------MEE   75 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-THHHHHHHHHHHHHHHSCCTTBCCEEEEEEE-------TTE
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC-cccHHHHHHHHHHHHhCCCCCCCeEeEEEec-------CCE
Confidence            578999999999999999999976 7899999998743 3445678899999999999999999998865       568


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC--CCceeEccCCc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ--NLVAKISSYNL  179 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~--~~~~kl~df~~  179 (206)
                      .+++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.  ++.++|+|||+
T Consensus        76 ~~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~---~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~  150 (321)
T 1tki_A           76 LVMIFEFISGLDIFERINTSA--FELNEREIVSYVHQVCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQ  150 (321)
T ss_dssp             EEEEECCCCCCBHHHHHTSSS--CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCTT
T ss_pred             EEEEEEeCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHH---CCCCcCCCCHHHEEEccCCCCCEEEEECCC
Confidence            999999999999999997643  358999999999999999999999   79999999999999997  78999999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +.............+++.|+|||..
T Consensus       151 a~~~~~~~~~~~~~gt~~y~aPE~~  175 (321)
T 1tki_A          151 ARQLKPGDNFRLLFTAPEYYAPEVH  175 (321)
T ss_dssp             CEECCTTCEEEEEESCGGGSCHHHH
T ss_pred             CeECCCCCccccccCChhhcCcHHh
Confidence            9988766666667899999999953

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=4e-34  Score=230.93  Aligned_cols=171  Identities=15%  Similarity=0.247  Sum_probs=147.8

Q ss_pred             HHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccc
Q 028629           19 LEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (206)
Q Consensus        19 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   94 (206)
                      +....++|...+.||+|+||.||+|... +++.||+|++....   ....+.+.+|..+++.++||||+++++++.+   
T Consensus        64 ~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~---  140 (410)
T 3v8s_A           64 LRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD---  140 (410)
T ss_dssp             HSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC---
T ss_pred             cccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE---
Confidence            3344578999999999999999999987 78999999997521   2333457889999999999999999998865   


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeE
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI  174 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl  174 (206)
                          ...+++||||+++++|.+++...    .+++.....++.|++.||.|||+   .+|+||||||+|||++.++.+||
T Consensus       141 ----~~~~~lV~E~~~gg~L~~~l~~~----~~~e~~~~~~~~qi~~aL~~LH~---~givHrDLKp~NILl~~~g~ikL  209 (410)
T 3v8s_A          141 ----DRYLYMVMEYMPGGDLVNLMSNY----DVPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPDNMLLDKSGHLKL  209 (410)
T ss_dssp             ----SSEEEEEECCCTTEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEE
T ss_pred             ----CCEEEEEEeCCCCCcHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeeECCCCCEEE
Confidence                67899999999999999998764    48899999999999999999999   79999999999999999999999


Q ss_pred             ccCCccccccccc--cccccccCccccCCCC
Q 028629          175 SSYNLPLLAENAE--KVGHVTPYSGSINPTN  203 (206)
Q Consensus       175 ~df~~a~~~~~~~--~~~~~~~~~~y~aPE~  203 (206)
                      +|||+++......  ......||+.|+|||.
T Consensus       210 ~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~  240 (410)
T 3v8s_A          210 ADFGTCMKMNKEGMVRCDTAVGTPDYISPEV  240 (410)
T ss_dssp             CCCTTCEECCTTSEEECCSCCSCGGGCCHHH
T ss_pred             eccceeEeeccCCcccccCCcCCccccCHHH
Confidence            9999998765543  3345789999999995

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=6.5e-34  Score=225.77  Aligned_cols=169  Identities=22%  Similarity=0.349  Sum_probs=141.3

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhcc-CCCceeeeccccccccccC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~   96 (206)
                      ..++|+..+.||+|+||.||+|+.. +++.||+|++....   ......+..|..+++.+ +||||+++++++.+     
T Consensus        21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~-----   95 (353)
T 3txo_A           21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQT-----   95 (353)
T ss_dssp             --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-----
T ss_pred             chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEe-----
Confidence            3578999999999999999999976 79999999997542   33445678899999988 69999999998865     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                        .+.+++||||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+||+|
T Consensus        96 --~~~~~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NILl~~~g~ikL~D  167 (353)
T 3txo_A           96 --PDRLFFVMEFVNGGDLMFHIQKS---RRFDEARARFYAAEIISALMFLHD---KGIIYRDLKLDNVLLDHEGHCKLAD  167 (353)
T ss_dssp             --SSEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECC
T ss_pred             --CCEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCCcccCCCHHHEEECCCCCEEEcc
Confidence              66899999999999999998765   458999999999999999999999   7999999999999999999999999


Q ss_pred             CCcccccc-ccccccccccCccccCCCC
Q 028629          177 YNLPLLAE-NAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       177 f~~a~~~~-~~~~~~~~~~~~~y~aPE~  203 (206)
                      ||+++... ........+||+.|+|||.
T Consensus       168 FG~a~~~~~~~~~~~~~~gt~~y~aPE~  195 (353)
T 3txo_A          168 FGMCKEGICNGVTTATFCGTPDYIAPEI  195 (353)
T ss_dssp             CTTCBCSCC---------CCGGGCCHHH
T ss_pred             ccceeecccCCccccccCCCcCeEChhh
Confidence            99998643 3334555789999999995

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=3.9e-33  Score=218.59  Aligned_cols=179  Identities=19%  Similarity=0.331  Sum_probs=155.3

Q ss_pred             ceeCHHHHHHHhcC----------CcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCC
Q 028629           12 RTFSLEELEEATNN----------FDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHC   80 (206)
Q Consensus        12 ~~~~~~~~~~~~~~----------~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~   80 (206)
                      ..++..++..+.+.          |...+.||+|+||.||+|... +|+.||+|++........+.+.+|+.++++++|+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~  102 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF  102 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence            45777777777654          777889999999999999987 7999999999877666677899999999999999


Q ss_pred             ceeeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCc
Q 028629           81 HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLK  160 (206)
Q Consensus        81 ~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~  160 (206)
                      ||+++++++..       .+..+++|||+++++|.+++..    ..+++..++.++.|++.||.|||+   .+++|+|||
T Consensus       103 niv~~~~~~~~-------~~~~~lv~e~~~~~~L~~~l~~----~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlk  168 (321)
T 2c30_A          103 NVVEMYKSYLV-------GEELWVLMEFLQGGALTDIVSQ----VRLNEEQIATVCEAVLQALAYLHA---QGVIHRDIK  168 (321)
T ss_dssp             TBCCEEEEEEE-------TTEEEEEECCCCSCBHHHHHTT----CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCS
T ss_pred             CcceEEEEEEE-------CCEEEEEEecCCCCCHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCC
Confidence            99999998876       5679999999999999998875    348999999999999999999999   799999999


Q ss_pred             cccEEecCCCceeEccCCcccccccc-ccccccccCccccCCCCC
Q 028629          161 ITDILLDQNLVAKISSYNLPLLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       161 p~nil~~~~~~~kl~df~~a~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      |+||+++.++.++|+|||++...... .......+|..|+|||..
T Consensus       169 p~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~  213 (321)
T 2c30_A          169 SDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVI  213 (321)
T ss_dssp             GGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHH
T ss_pred             HHHEEECCCCcEEEeeeeeeeecccCccccccccCCccccCHhhh
Confidence            99999999999999999999876543 234456899999999964

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.9e-33  Score=219.77  Aligned_cols=169  Identities=19%  Similarity=0.293  Sum_probs=148.7

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC------ccHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS------HSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      .++|...+.||+|+||.||+|... ++..||+|.+.....      ...+.+.+|+.++++++||||+++++++..    
T Consensus        10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~----   85 (326)
T 2y0a_A           10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYEN----   85 (326)
T ss_dssp             HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC----
T ss_pred             ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEe----
Confidence            456999999999999999999976 799999999975432      235678999999999999999999998865    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC----c
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL----V  171 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~----~  171 (206)
                         ....+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||||+||++++++    .
T Consensus        86 ---~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~  156 (326)
T 2y0a_A           86 ---KTDVILILELVAGGELFDFLAEK---ESLTEEEATEFLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPR  156 (326)
T ss_dssp             ---SSEEEEEEECCCSCBHHHHHTTS---SCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESCSSSSSCC
T ss_pred             ---CCEEEEEEEcCCCCCHHHHHHhc---CCcCHHHHHHHHHHHHHHHHHHHH---CCeEcCCCCHHHEEEecCCCCCCC
Confidence               56899999999999999999765   458999999999999999999999   7999999999999999877    8


Q ss_pred             eeEccCCccccccccccccccccCccccCCCCC
Q 028629          172 AKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       172 ~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +||+|||++.............+++.|+|||..
T Consensus       157 ~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~  189 (326)
T 2y0a_A          157 IKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIV  189 (326)
T ss_dssp             EEECCCTTCEECCTTSCCCCCCSCTTTCCHHHH
T ss_pred             EEEEECCCCeECCCCCccccccCCcCcCCceee
Confidence            999999999987665555567899999999953

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=2.1e-33  Score=219.90  Aligned_cols=166  Identities=22%  Similarity=0.344  Sum_probs=146.8

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|+..+.||+|+||.||+|... +|+.||+|++....   ....+.+.+|..+++.++||||+++++++.+       
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~-------   77 (318)
T 1fot_A            5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQD-------   77 (318)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEEC-------
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEe-------
Confidence            467999999999999999999976 79999999997542   3345678889999999999999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ...++++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||
T Consensus        78 ~~~~~lv~e~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~Dfg  151 (318)
T 1fot_A           78 AQQIFMIMDYIEGGELFSLLRKS---QRFPNPVAKFYAAEVCLALEYLHS---KDIIYRDLKPENILLDKNGHIKITDFG  151 (318)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHHT---SSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTSCEEECCCS
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChheEEEcCCCCEEEeecC
Confidence            56899999999999999999875   458899999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccccccccccCccccCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      +++.....  .....||+.|+|||.
T Consensus       152 ~a~~~~~~--~~~~~gt~~y~aPE~  174 (318)
T 1fot_A          152 FAKYVPDV--TYTLCGTPDYIAPEV  174 (318)
T ss_dssp             SCEECSSC--BCCCCSCTTTCCHHH
T ss_pred             cceecCCc--cccccCCccccCHhH
Confidence            99876543  334689999999995

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=2.9e-33  Score=218.91  Aligned_cols=173  Identities=22%  Similarity=0.338  Sum_probs=149.6

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|...+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++|+||+++++++..     ....
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~   82 (319)
T 4euu_A            8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEE-----TTTR   82 (319)
T ss_dssp             SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----TTTC
T ss_pred             CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeec-----CCCc
Confidence            467999999999999999999986 69999999997543 3345677899999999999999999998754     2244


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEe----cCCCceeEcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL----DQNLVAKISS  176 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~----~~~~~~kl~d  176 (206)
                      ..+++|||+++++|.+++........+++..++.++.|++.||.|||+   .+|+|+||||+||++    +.++.+||+|
T Consensus        83 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kL~D  159 (319)
T 4euu_A           83 HKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTD  159 (319)
T ss_dssp             CEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEECTTSCEEEEECC
T ss_pred             eEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEEeccCCCCceEEEcc
Confidence            789999999999999999865432448999999999999999999999   799999999999999    7778899999


Q ss_pred             CCccccccccccccccccCccccCCCC
Q 028629          177 YNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       177 f~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      ||++.............++..|+|||.
T Consensus       160 fg~a~~~~~~~~~~~~~gt~~y~aPE~  186 (319)
T 4euu_A          160 FGAARELEDDEQFVSLYGTEEYLHPDM  186 (319)
T ss_dssp             CTTCEECCTTCCBCCCCSCGGGCCHHH
T ss_pred             CCCceecCCCCceeecccCCCccCHHH
Confidence            999998877666666789999999995

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=2.2e-33  Score=222.16  Aligned_cols=169  Identities=20%  Similarity=0.295  Sum_probs=146.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC---ccHHHHHHHHHHHhcc-CCCceeeeccccccccccCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .++|+..+.||+|+||.||+|+.. +++.||+|++.....   ...+.+.+|..+++++ +||||+++++++.+      
T Consensus         8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~------   81 (345)
T 3a8x_A            8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQT------   81 (345)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC------
T ss_pred             hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEe------
Confidence            467999999999999999999986 789999999976532   2345678899999988 89999999998865      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       ...++++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.+||+||
T Consensus        82 -~~~~~lv~e~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~DF  154 (345)
T 3a8x_A           82 -ESRLFFVIEYVNGGDLMFHMQRQ---RKLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDY  154 (345)
T ss_dssp             -SSEEEEEECCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCG
T ss_pred             -CCEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEECCCCCEEEEec
Confidence             67899999999999999998765   358999999999999999999999   79999999999999999999999999


Q ss_pred             Ccccccc-ccccccccccCccccCCCCC
Q 028629          178 NLPLLAE-NAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~-~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |+++... .........||+.|+|||..
T Consensus       155 G~a~~~~~~~~~~~~~~gt~~y~aPE~~  182 (345)
T 3a8x_A          155 GMCKEGLRPGDTTSTFCGTPNYIAPEIL  182 (345)
T ss_dssp             GGCBCSCCTTCCBCCCCSCGGGCCHHHH
T ss_pred             cccccccCCCCcccccCCCccccCcccc
Confidence            9998643 33345557899999999953

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=8.2e-34  Score=222.23  Aligned_cols=180  Identities=35%  Similarity=0.614  Sum_probs=153.2

Q ss_pred             eCHHHHHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeecccccccc
Q 028629           14 FSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECY   93 (206)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   93 (206)
                      +.+.++....++|+..+.||+|+||.||+|...++..||+|.+........+.+.+|+.+++.++|+||+++++++..  
T Consensus        29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~--  106 (321)
T 2qkw_B           29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDE--  106 (321)
T ss_dssp             -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCC--
T ss_pred             ecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcC--
Confidence            344455566789999999999999999999987899999999876666667789999999999999999999998865  


Q ss_pred             ccCCCCceEEEEEeecCCCCHHHHHhcCCC-CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCce
Q 028629           94 FDDSSVSRIFLIFEYVPNGTLRSWISEGHA-WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVA  172 (206)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~  172 (206)
                           .+..+++|||+++++|.+++..... ...+++..++.++.|++.||.|||+   .+++|+||||+||++++++.+
T Consensus       107 -----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~  178 (321)
T 2qkw_B          107 -----RNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHT---RAIIHRDVKSINILLDENFVP  178 (321)
T ss_dssp             -----TTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCSTTEEECTTCCE
T ss_pred             -----CCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcC---CCeecCCCCHHHEEECCCCCE
Confidence                 5678999999999999999865432 1358999999999999999999999   799999999999999999999


Q ss_pred             eEccCCccccccccc---cccccccCccccCCCC
Q 028629          173 KISSYNLPLLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       173 kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                      ||+|||++.......   ......++..|+|||.
T Consensus       179 kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~  212 (321)
T 2qkw_B          179 KITDFGISKKGTELDQTHLSTVVKGTLGYIDPEY  212 (321)
T ss_dssp             EECCCTTCEECSSSSCCCCBCCCEEETTTCCHHH
T ss_pred             EEeecccccccccccccccccccCCCccccCHHH
Confidence            999999998654322   2333568889999995

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=8.2e-34  Score=229.22  Aligned_cols=175  Identities=14%  Similarity=0.183  Sum_probs=149.2

Q ss_pred             HHHHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccc
Q 028629           17 EELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFEC   92 (206)
Q Consensus        17 ~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   92 (206)
                      .+.....++|+..+.||+|+||.||+|+.. +++.||+|++.+..   ....+.+.+|..++..++|+||+++++++.+ 
T Consensus        54 ~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~-  132 (412)
T 2vd5_A           54 KEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQD-  132 (412)
T ss_dssp             HHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEEC-
T ss_pred             hhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEee-
Confidence            334445689999999999999999999986 79999999997432   2233457889999999999999999998865 


Q ss_pred             cccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCce
Q 028629           93 YFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVA  172 (206)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~  172 (206)
                            .+.+++||||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+
T Consensus       133 ------~~~~~lVmE~~~gg~L~~~l~~~~--~~l~~~~~~~~~~qi~~aL~~LH~---~giiHrDLKp~NILld~~g~v  201 (412)
T 2vd5_A          133 ------ENYLYLVMEYYVGGDLLTLLSKFG--ERIPAEMARFYLAEIVMAIDSVHR---LGYVHRDIKPDNILLDRCGHI  201 (412)
T ss_dssp             ------SSEEEEEECCCCSCBHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCE
T ss_pred             ------CCEEEEEEcCCCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccCHHHeeecCCCCE
Confidence                  678999999999999999997642  358999999999999999999999   799999999999999999999


Q ss_pred             eEccCCcccccccccc--ccccccCccccCCCC
Q 028629          173 KISSYNLPLLAENAEK--VGHVTPYSGSINPTN  203 (206)
Q Consensus       173 kl~df~~a~~~~~~~~--~~~~~~~~~y~aPE~  203 (206)
                      ||+|||+++.......  .....||+.|+|||.
T Consensus       202 kL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~  234 (412)
T 2vd5_A          202 RLADFGSCLKLRADGTVRSLVAVGTPDYLSPEI  234 (412)
T ss_dssp             EECCCTTCEECCTTSCEECSSCCSCGGGCCHHH
T ss_pred             EEeechhheeccCCCccccceeccccCcCCHHH
Confidence            9999999987654432  334689999999995

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=2.6e-33  Score=221.62  Aligned_cols=172  Identities=23%  Similarity=0.344  Sum_probs=147.2

Q ss_pred             HHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhcc-CCCceeeeccccccccc
Q 028629           20 EEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYF   94 (206)
Q Consensus        20 ~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~   94 (206)
                      ....++|...+.||+|+||.||+|... +++.||+|.+....   ......+..|..++..+ +||||+++++++.+   
T Consensus        13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~---   89 (345)
T 1xjd_A           13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQT---   89 (345)
T ss_dssp             ---CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEEC---
T ss_pred             CCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEe---
Confidence            345689999999999999999999986 78999999997542   33456678899999887 89999999998865   


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeE
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI  174 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl  174 (206)
                          .+.++++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.+||
T Consensus        90 ----~~~~~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~vkL  159 (345)
T 1xjd_A           90 ----KENLFFVMEYLNGGDLMYHIQSC---HKFDLSRATFYAAEIILGLQFLHS---KGIVYRDLKLDNILLDKDGHIKI  159 (345)
T ss_dssp             ----SSEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEE
T ss_pred             ----CCEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCChhhEEECCCCCEEE
Confidence                66899999999999999999765   358999999999999999999999   79999999999999999999999


Q ss_pred             ccCCccccccc-cccccccccCccccCCCCC
Q 028629          175 SSYNLPLLAEN-AEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       175 ~df~~a~~~~~-~~~~~~~~~~~~y~aPE~~  204 (206)
                      +|||+++.... ........||+.|+|||..
T Consensus       160 ~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~  190 (345)
T 1xjd_A          160 ADFGMCKENMLGDAKTNTFCGTPDYIAPEIL  190 (345)
T ss_dssp             CCCTTCBCCCCTTCCBCCCCSCGGGCCHHHH
T ss_pred             eEChhhhhcccCCCcccCCCCCcccCChhhh
Confidence            99999986532 2345557899999999953

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-33  Score=221.35  Aligned_cols=168  Identities=20%  Similarity=0.280  Sum_probs=148.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|...+.||+|+||.||+|... +++.||+|.+....   ......+.+|+.+++.++||||+++++++..       
T Consensus         8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~-------   80 (336)
T 3h4j_B            8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITT-------   80 (336)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEEC-------
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-------
Confidence            478999999999999999999975 79999999997432   2334578899999999999999999999865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+..+++|||+ +++|.+.+...   ..+++..++.++.|++.||.|||+   .+++||||||+||++++++.+||+|||
T Consensus        81 ~~~~~lv~E~~-~g~l~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kl~DFG  153 (336)
T 3h4j_B           81 PTDIVMVIEYA-GGELFDYIVEK---KRMTEDEGRRFFQQIICAIEYCHR---HKIVHRDLKPENLLLDDNLNVKIADFG  153 (336)
T ss_dssp             SSEEEEEECCC-CEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---HTCCCCCCSTTTEEECTTCCEEECCSS
T ss_pred             CCEEEEEEECC-CCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCchhhEEEcCCCCEEEEEec
Confidence            56799999999 67898888665   458999999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccccccccccCccccCCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ++.............|++.|+|||..
T Consensus       154 ~s~~~~~~~~~~~~~gt~~y~aPE~~  179 (336)
T 3h4j_B          154 LSNIMTDGNFLKTSCGSPNYAAPEVI  179 (336)
T ss_dssp             CTBTTTTSBTTCCCTTSTTTSCGGGS
T ss_pred             cceeccCCcccccccCCcCcCCHHHH
Confidence            99988776666667899999999975

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=2.1e-33  Score=223.57  Aligned_cols=171  Identities=20%  Similarity=0.301  Sum_probs=148.8

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC--ccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ...++|...+.||+|+||.||+|... ++..||+|.+.....  ...+.+.+|+.+++.++||||+++++++.+      
T Consensus        26 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~------   99 (362)
T 2bdw_A           26 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQE------   99 (362)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEC------
T ss_pred             CcccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEe------
Confidence            34568999999999999999999976 799999999975532  234578899999999999999999998865      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC---CceeE
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN---LVAKI  174 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~---~~~kl  174 (206)
                       .+..+++|||+++++|.+.+...   ..+++..++.++.|++.||.|||+   .+|+|+||||+||+++.+   +.+||
T Consensus       100 -~~~~~lv~e~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~Dlkp~NIll~~~~~~~~~kl  172 (362)
T 2bdw_A          100 -ESFHYLVFDLVTGGELFEDIVAR---EFYSEADASHCIQQILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKL  172 (362)
T ss_dssp             -SSEEEEEECCCCSCBHHHHHTTC---SCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEESCSSTTCCEEE
T ss_pred             -CCEEEEEEecCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCchHHEEEecCCCCCCEEE
Confidence             66899999999999999988765   458999999999999999999999   799999999999999864   46999


Q ss_pred             ccCCccccccccccccccccCccccCCCCC
Q 028629          175 SSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       175 ~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +|||++.............+|++|+|||..
T Consensus       173 ~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~  202 (362)
T 2bdw_A          173 ADFGLAIEVNDSEAWHGFAGTPGYLSPEVL  202 (362)
T ss_dssp             CCCTTCBCCTTCCSCCCSCSCTTTCCHHHH
T ss_pred             eecCcceEecCCcccccCCCCccccCHHHH
Confidence            999999887766555567899999999953

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=4.8e-33  Score=215.54  Aligned_cols=168  Identities=20%  Similarity=0.310  Sum_probs=141.3

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC---ccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|+..+.||+|+||.||+|... ++..||+|.+.....   ...+.+.+|+..+++++||||+++++++..       
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~-------   82 (294)
T 4eqm_A           10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEE-------   82 (294)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEEC-------
T ss_pred             hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeee-------
Confidence            578999999999999999999976 789999999865432   234578899999999999999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+..+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||
T Consensus        83 ~~~~~lv~e~~~g~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~Dfg  156 (294)
T 4eqm_A           83 DDCYYLVMEYIEGPTLSEYIESH---GPLSVDTAINFTNQILDGIKHAHD---MRIVHRDIKPQNILIDSNKTLKIFDFG  156 (294)
T ss_dssp             SSEEEEEEECCCSCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCS
T ss_pred             CCeEEEEEeCCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCCEEEEeCC
Confidence            67899999999999999999765   458999999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccc--cccccccCccccCCCC
Q 028629          179 LPLLAENAE--KVGHVTPYSGSINPTN  203 (206)
Q Consensus       179 ~a~~~~~~~--~~~~~~~~~~y~aPE~  203 (206)
                      ++.......  ......+++.|+|||.
T Consensus       157 ~~~~~~~~~~~~~~~~~gt~~y~aPE~  183 (294)
T 4eqm_A          157 IAKALSETSLTQTNHVLGTVQYFSPEQ  183 (294)
T ss_dssp             SSTTC-------------CCSSCCHHH
T ss_pred             CccccccccccccCccccCccccCHhH
Confidence            998765432  3334578999999995

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=5e-33  Score=223.13  Aligned_cols=170  Identities=17%  Similarity=0.249  Sum_probs=149.7

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      .++|...+.||+|+||.||+|... ++..||+|.+..........+.+|+.+++.++|+||+++++++..       ...
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-------~~~  122 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFED-------KYE  122 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEEC-------SSE
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEe-------CCE
Confidence            467999999999999999999976 789999999986655555678899999999999999999998865       568


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC--CCceeEccCCc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ--NLVAKISSYNL  179 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~--~~~~kl~df~~  179 (206)
                      .+++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+|+|+||||+||+++.  ++.+||+|||+
T Consensus       123 ~~lv~E~~~gg~L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDlkp~NIll~~~~~~~vkL~DFG~  197 (387)
T 1kob_A          123 MVLILEFLSGGELFDRIAAED--YKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFGL  197 (387)
T ss_dssp             EEEEEECCCCCBHHHHTTCTT--CCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTCCCEEECCCTT
T ss_pred             EEEEEEcCCCCcHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccchHHeEEecCCCCceEEEeccc
Confidence            999999999999999887543  358999999999999999999999   79999999999999984  47899999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +.............+|..|+|||..
T Consensus       198 a~~~~~~~~~~~~~gt~~y~aPE~~  222 (387)
T 1kob_A          198 ATKLNPDEIVKVTTATAEFAAPEIV  222 (387)
T ss_dssp             CEECCTTSCEEEECSSGGGCCHHHH
T ss_pred             ceecCCCcceeeeccCCCccCchhc
Confidence            9987766555567899999999964

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=3.6e-33  Score=222.11  Aligned_cols=167  Identities=18%  Similarity=0.231  Sum_probs=137.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      .++|...+.||+|+||.||++... +++.||+|++.... ...+.+.+|+.+++.++|+||+++++++..       .+.
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-------~~~   90 (361)
T 3uc3_A           19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA-AIDENVQREIINHRSLRHPNIVRFKEVILT-------PTH   90 (361)
T ss_dssp             TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST-TSCHHHHHHHHHHHHCCCTTBCCEEEEEEC-------SSE
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc-cccHHHHHHHHHHHhCCCCCCCcEEEEEee-------CCE
Confidence            578999999999999999999987 79999999997543 334668899999999999999999999875       668


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc--eeEccCCc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV--AKISSYNL  179 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~--~kl~df~~  179 (206)
                      .+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.  +||+|||+
T Consensus        91 ~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~ql~~~L~~LH~---~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~  164 (361)
T 3uc3_A           91 LAIIMEYASGGELYERICNA---GRFSEDEARFFFQQLLSGVSYCHS---MQICHRDLKLENTLLDGSPAPRLKICDFGY  164 (361)
T ss_dssp             EEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCCSCCCCGGGEEECSSSSCCEEECCCCC
T ss_pred             EEEEEEeCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCCceEEEeecCc
Confidence            99999999999999998765   358999999999999999999999   79999999999999987654  99999999


Q ss_pred             cccccccccccccccCccccCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      ++............+|+.|+|||.
T Consensus       165 a~~~~~~~~~~~~~gt~~y~aPE~  188 (361)
T 3uc3_A          165 SKSSVLHSQPKSTVGTPAYIAPEV  188 (361)
T ss_dssp             C---------------CTTSCHHH
T ss_pred             cccccccCCCCCCcCCCCcCChhh
Confidence            986655555556789999999995

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=3.7e-33  Score=221.18  Aligned_cols=167  Identities=17%  Similarity=0.266  Sum_probs=147.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|...+.||+|+||.||+|... +++.||+|++....   ....+.+.+|+.+++.++||||+++++++.+       
T Consensus        40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------  112 (350)
T 1rdq_E           40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKD-------  112 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-------
T ss_pred             HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc-------
Confidence            368999999999999999999986 79999999997542   3445678899999999999999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ...++++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.++|+|||
T Consensus       113 ~~~~~lv~e~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~g~~kL~DFg  186 (350)
T 1rdq_E          113 NSNLYMVMEYVAGGEMFSHLRRI---GRFSEPHARFYAAQIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFG  186 (350)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             CCEEEEEEcCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCccceEEECCCCCEEEcccc
Confidence            56899999999999999999765   358999999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccccccccccCccccCCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +++.....  .....||+.|+|||..
T Consensus       187 ~a~~~~~~--~~~~~gt~~y~aPE~~  210 (350)
T 1rdq_E          187 FAKRVKGR--TWTLCGTPEALAPEII  210 (350)
T ss_dssp             TCEECSSC--BCCCEECGGGCCHHHH
T ss_pred             cceeccCC--cccccCCccccCHHHh
Confidence            99877543  3346899999999953

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=4.3e-33  Score=232.30  Aligned_cols=172  Identities=18%  Similarity=0.264  Sum_probs=150.6

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ..++|...+.||+|+||.||+|... +|+.||+|.+....   ......+.+|+.+++.++|+||+++++++.+      
T Consensus       182 ~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~------  255 (576)
T 2acx_A          182 TKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYET------  255 (576)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEEC------
T ss_pred             cccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEee------
Confidence            3467999999999999999999986 79999999997532   3345678899999999999999999998865      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       .+.+++||||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+||+||
T Consensus       256 -~~~l~lVmEy~~gg~L~~~l~~~~~-~~l~e~~~~~i~~qIl~aL~yLH~---~gIvHrDLKPeNILld~~g~vKL~DF  330 (576)
T 2acx_A          256 -KDALCLVLTLMNGGDLKFHIYHMGQ-AGFPEARAVFYAAEICCGLEDLHR---ERIVYRDLKPENILLDDHGHIRISDL  330 (576)
T ss_dssp             -SSEEEEEECCCCSCBHHHHHHSSSS-CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCC
T ss_pred             -CCEEEEEEEcCCCCcHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHH---CCEeccCCchheEEEeCCCCeEEEec
Confidence             6689999999999999999876532 458999999999999999999999   79999999999999999999999999


Q ss_pred             CccccccccccccccccCccccCCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |++.............||+.|+|||..
T Consensus       331 Gla~~~~~~~~~~~~~GT~~Y~APEvl  357 (576)
T 2acx_A          331 GLAVHVPEGQTIKGRVGTVGYMAPEVV  357 (576)
T ss_dssp             TTCEECCTTCCEECCCSCGGGCCHHHH
T ss_pred             ccceecccCccccccCCCccccCHHHH
Confidence            999887665555557899999999953

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=3.8e-33  Score=221.34  Aligned_cols=170  Identities=19%  Similarity=0.280  Sum_probs=147.0

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhcc-CCCceeeeccccccccccC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~   96 (206)
                      ..++|...+.||+|+||.||+|... +++.||+|++....   ....+.+..|..++..+ +|++|+++++++.+     
T Consensus        18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~-----   92 (353)
T 2i0e_A           18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQT-----   92 (353)
T ss_dssp             -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEEC-----
T ss_pred             chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEc-----
Confidence            4578999999999999999999986 58899999997542   34456778899999988 79999999998865     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                        .+.++++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+||+|
T Consensus        93 --~~~~~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~vkL~D  164 (353)
T 2i0e_A           93 --MDRLYFVMEYVNGGDLMYHIQQV---GRFKEPHAVFYAAEIAIGLFFLQS---KGIIYRDLKLDNVMLDSEGHIKIAD  164 (353)
T ss_dssp             --SSEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECC
T ss_pred             --CCEEEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCEEeccCCHHHEEEcCCCcEEEEe
Confidence              56899999999999999999765   358999999999999999999999   7999999999999999999999999


Q ss_pred             CCcccccc-ccccccccccCccccCCCCC
Q 028629          177 YNLPLLAE-NAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~-~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ||+++... .........||+.|+|||..
T Consensus       165 FG~a~~~~~~~~~~~~~~gt~~y~aPE~~  193 (353)
T 2i0e_A          165 FGMCKENIWDGVTTKTFCGTPDYIAPEII  193 (353)
T ss_dssp             CTTCBCCCCTTCCBCCCCSCGGGCCHHHH
T ss_pred             CCcccccccCCcccccccCCccccChhhh
Confidence            99998643 33345557899999999953

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=3.8e-33  Score=218.85  Aligned_cols=169  Identities=21%  Similarity=0.305  Sum_probs=144.6

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|+..+.||+|+||.||+|... +++.||+|++..... ...+.+.+|+.+++.++|+||+++++++..       .+
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-------~~   78 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRRE-------GN   78 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEEC-------SS
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEec-------CC
Confidence            578999999999999999999976 799999999975432 234567889999999999999999998865       66


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++
T Consensus        79 ~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kl~Dfg~a  152 (323)
T 3tki_A           79 IQYLFLEYCSGGELFDRIEPD---IGMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLA  152 (323)
T ss_dssp             EEEEEEECCTTEEGGGGSBTT---TBCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred             eEEEEEEcCCCCcHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccccchHHEEEeCCCCEEEEEeecc
Confidence            889999999999999998765   458999999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccc---cccccccCccccCCCCC
Q 028629          181 LLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      .......   ......++..|+|||..
T Consensus       153 ~~~~~~~~~~~~~~~~gt~~y~aPE~~  179 (323)
T 3tki_A          153 TVFRYNNRERLLNKMCGTLPYVAPELL  179 (323)
T ss_dssp             EECEETTEECCBCSCCSCGGGSCHHHH
T ss_pred             ceeccCCcccccCCCccCcCccCcHHh
Confidence            8664332   23346789999999953

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=6.3e-33  Score=215.02  Aligned_cols=171  Identities=18%  Similarity=0.292  Sum_probs=142.4

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC--------------------------ccHHHHHHHHHHH
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--------------------------HSTRNFMHHIELI   74 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~--------------------------~~~~~~~~e~~~l   74 (206)
                      ..++|...+.||+|+||.||+|... +++.||+|++.....                          ...+.+.+|++++
T Consensus        11 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l   90 (298)
T 2zv2_A           11 QLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAIL   90 (298)
T ss_dssp             EETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHH
T ss_pred             eecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHH
Confidence            3578999999999999999999976 789999999975431                          1135688999999


Q ss_pred             hccCCCceeeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCce
Q 028629           75 SKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGV  154 (206)
Q Consensus        75 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i  154 (206)
                      ++++|+||+++++++..     ......+++|||+++++|.++...    ..+++..++.++.|++.||.|||+   .++
T Consensus        91 ~~l~h~~iv~~~~~~~~-----~~~~~~~lv~e~~~~~~l~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~---~~i  158 (298)
T 2zv2_A           91 KKLDHPNVVKLVEVLDD-----PNEDHLYMVFELVNQGPVMEVPTL----KPLSEDQARFYFQDLIKGIEYLHY---QKI  158 (298)
T ss_dssp             HTCCCTTBCCEEEEEEC-----SSSSEEEEEEECCTTCBSCCSSCS----SCCCHHHHHHHHHHHHHHHHHHHH---TTE
T ss_pred             HhCCCCCCCeEEEEEEc-----CCCCEEEEEEecCCCCcHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHH---CCe
Confidence            99999999999998754     235679999999999999876543    458999999999999999999999   799


Q ss_pred             eccCCccccEEecCCCceeEccCCcccccccc-ccccccccCccccCCCCC
Q 028629          155 FSNNLKITDILLDQNLVAKISSYNLPLLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       155 ~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      +|+||||+||+++.++.+||+|||++...... .......++..|+|||..
T Consensus       159 vH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~  209 (298)
T 2zv2_A          159 IHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESL  209 (298)
T ss_dssp             ECCCCCGGGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGC
T ss_pred             eccCCCHHHEEECCCCCEEEecCCCccccccccccccCCcCCccccChhhh
Confidence            99999999999999999999999999876543 233446789999999975

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=6.3e-33  Score=227.63  Aligned_cols=169  Identities=21%  Similarity=0.339  Sum_probs=150.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|...+.||+|+||.||+|... +|+.||+|.+....   ......+.+|+.+++.++||||+++++++..       
T Consensus        15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~-------   87 (476)
T 2y94_A           15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVIST-------   87 (476)
T ss_dssp             ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEEC-------
T ss_pred             ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-------
Confidence            478999999999999999999986 79999999997542   2345678899999999999999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+..+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.+||+|||
T Consensus        88 ~~~~~lv~E~~~gg~L~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDLkp~NIll~~~~~vkL~DFG  161 (476)
T 2y94_A           88 PSDIFMVMEYVSGGELFDYICKN---GRLDEKESRRLFQQILSGVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFG  161 (476)
T ss_dssp             SSEEEEEEECCSSEEHHHHTTSS---SSCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCSGGGEEECTTCCEEECCCS
T ss_pred             CCEEEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCCCcccccHHHEEEecCCCeEEEecc
Confidence            56899999999999999998765   458999999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccccccccccCccccCCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ++.............+++.|+|||..
T Consensus       162 ~a~~~~~~~~~~~~~gt~~y~aPE~~  187 (476)
T 2y94_A          162 LSNMMSDGEFLRTSCGSPNYAAPEVI  187 (476)
T ss_dssp             SCEECCTTCCBCCCCSCSTTCCHHHH
T ss_pred             chhhccccccccccCCCcCeEChhhc
Confidence            99987766555667899999999953

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=1.1e-32  Score=211.49  Aligned_cols=170  Identities=15%  Similarity=0.194  Sum_probs=151.7

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ..++|+..+.||+|+||.||+|... ++..+|+|.+........+.+.+|++++++++|+||+++++++..       ..
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-------~~   79 (277)
T 3f3z_A            7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFED-------NT   79 (277)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-------SS
T ss_pred             hhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEec-------CC
Confidence            3567999999999999999999976 688999999987666667889999999999999999999998865       66


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEe---cCCCceeEccC
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL---DQNLVAKISSY  177 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~---~~~~~~kl~df  177 (206)
                      ..+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||++   +.++.++|+||
T Consensus        80 ~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~~~~l~Df  153 (277)
T 3f3z_A           80 DIYLVMELCTGGELFERVVHK---RVFRESDAARIMKDVLSAVAYCHK---LNVAHRDLKPENFLFLTDSPDSPLKLIDF  153 (277)
T ss_dssp             EEEEEEECCCSCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSTTCCEEECCC
T ss_pred             eEEEEEeccCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCCHHHEEEecCCCCCcEEEEec
Confidence            799999999999999988765   458999999999999999999999   799999999999999   77889999999


Q ss_pred             CccccccccccccccccCccccCCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |++.............++..|+|||..
T Consensus       154 g~~~~~~~~~~~~~~~~t~~y~aPE~~  180 (277)
T 3f3z_A          154 GLAARFKPGKMMRTKVGTPYYVSPQVL  180 (277)
T ss_dssp             TTCEECCTTSCBCCCCSCTTTCCHHHH
T ss_pred             ccceeccCccchhccCCCCCccChHHh
Confidence            999887766666667899999999953

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=5.1e-33  Score=213.91  Aligned_cols=178  Identities=21%  Similarity=0.308  Sum_probs=146.1

Q ss_pred             eeCHHHHHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccc
Q 028629           13 TFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC   92 (206)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   92 (206)
                      ......+....++|+..+.||+|+||.||++...++..||+|.+... ....+.+.+|++++++++|+||+++++++.. 
T Consensus        13 ~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-   90 (283)
T 3gen_A           13 GLGYGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK-   90 (283)
T ss_dssp             ---CCTTBCCGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTT-SBCHHHHHHHHHHHHTCCCTTBCCEEEEECS-
T ss_pred             CCCCCCccCCHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCC-CCCHHHHHHHHHHHhcCCCCCEeeEEEEEec-
Confidence            33344455567889999999999999999999888889999999744 3345778999999999999999999998865 


Q ss_pred             cccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCce
Q 028629           93 YFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVA  172 (206)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~  172 (206)
                            .+..+++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||||+||++++++.+
T Consensus        91 ------~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nili~~~~~~  159 (283)
T 3gen_A           91 ------QRPIFIITEYMANGCLLNYLREMR--HRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVV  159 (283)
T ss_dssp             ------SSSEEEEECCCTTCBHHHHHHCGG--GCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCSGGGEEECTTSCE
T ss_pred             ------CCCeEEEEeccCCCcHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCccceEEEcCCCCE
Confidence                  567999999999999999997632  458999999999999999999999   799999999999999999999


Q ss_pred             eEccCCccccccccc--cccccccCccccCCCC
Q 028629          173 KISSYNLPLLAENAE--KVGHVTPYSGSINPTN  203 (206)
Q Consensus       173 kl~df~~a~~~~~~~--~~~~~~~~~~y~aPE~  203 (206)
                      +|+|||++.......  ......++..|+|||.
T Consensus       160 kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~  192 (283)
T 3gen_A          160 KVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEV  192 (283)
T ss_dssp             EECSTTGGGGBCCHHHHSTTSTTSCGGGCCHHH
T ss_pred             EEccccccccccccccccccCCccCcccCCHHH
Confidence            999999998765432  2222345667999995

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.6e-32  Score=209.81  Aligned_cols=168  Identities=21%  Similarity=0.360  Sum_probs=145.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      .++|+..+.||+|+||.||+|...++..||+|.+... ....+.+.+|++++++++|+||+++++++.+       .+..
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-------~~~~   80 (269)
T 4hcu_A            9 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE-------QAPI   80 (269)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTT-SBCHHHHHHHHHHHHTCCCTTBCCEEEEECS-------SSSE
T ss_pred             hhhceeeheecCCCccEEEEEEecCCCeEEEEEeccc-ccCHHHHHHHHHHHHhCCCCCEeeEEEEEec-------CCce
Confidence            5689999999999999999999878889999999744 3345678999999999999999999998865       5679


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      +++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++..
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~  155 (269)
T 4hcu_A           81 CLVFEFMEHGCLSDYLRTQR--GLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRF  155 (269)
T ss_dssp             EEEEECCTTCBHHHHHHTTT--TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECGGGCEEECCTTGGGG
T ss_pred             EEEEEeCCCCcHHHHHHhcC--cccCHHHHHHHHHHHHHHHHHHHh---CCeecCCcchheEEEcCCCCEEecccccccc
Confidence            99999999999999997643  458999999999999999999999   7999999999999999999999999999987


Q ss_pred             ccccc--cccccccCccccCCCC
Q 028629          183 AENAE--KVGHVTPYSGSINPTN  203 (206)
Q Consensus       183 ~~~~~--~~~~~~~~~~y~aPE~  203 (206)
                      .....  ......++..|+|||.
T Consensus       156 ~~~~~~~~~~~~~~~~~y~aPE~  178 (269)
T 4hcu_A          156 VLDDQYTSSTGTKFPVKWASPEV  178 (269)
T ss_dssp             BCCHHHHSTTSTTCCGGGCCHHH
T ss_pred             ccccccccccCcccccccCCHHH
Confidence            65432  2223455667999995

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=1.6e-32  Score=212.24  Aligned_cols=167  Identities=16%  Similarity=0.294  Sum_probs=143.1

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ++|+..+.||+|+||.||+|... +++.||+|++....  ......+.+|+.++++++|+||+++++++.+       .+
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~   74 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHS-------DK   74 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-------TT
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEe-------CC
Confidence            57999999999999999999986 79999999997553  3334678899999999999999999999865       66


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..+++|||+++ ++.+.+....  ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.+||+|||++
T Consensus        75 ~~~lv~e~~~~-~l~~~~~~~~--~~l~~~~~~~~~~ql~~~l~~lH~---~~ivH~dikp~Nil~~~~~~~kl~Dfg~~  148 (292)
T 3o0g_A           75 KLTLVFEFCDQ-DLKKYFDSCN--GDLDPEIVKSFLFQLLKGLGFCHS---RNVLHRDLKPQNLLINRNGELKLANFGLA  148 (292)
T ss_dssp             EEEEEEECCSE-EHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             EEEEEEecCCC-CHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEeecccc
Confidence            89999999976 6666555433  458999999999999999999999   79999999999999999999999999999


Q ss_pred             cccccc-ccccccccCccccCCCC
Q 028629          181 LLAENA-EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~y~aPE~  203 (206)
                      ...... .......+|..|+|||.
T Consensus       149 ~~~~~~~~~~~~~~~t~~y~aPE~  172 (292)
T 3o0g_A          149 RAFGIPVRCYSAEVVTLWYRPPDV  172 (292)
T ss_dssp             EECCSCCSCCCSCCSCGGGCCHHH
T ss_pred             eecCCccccccCCccccCCcChHH
Confidence            876543 33344678899999995

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=8.5e-33  Score=220.89  Aligned_cols=164  Identities=21%  Similarity=0.278  Sum_probs=139.5

Q ss_pred             cceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEEEe
Q 028629           29 SAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFE  107 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e  107 (206)
                      .+.||+|+||.||+|... +|..||+|++........+.+.+|++++++++|+||+++++++..       .+..+++||
T Consensus        94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-------~~~~~lv~E  166 (373)
T 2x4f_A           94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFES-------KNDIVLVME  166 (373)
T ss_dssp             EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEC-------SSEEEEEEE
T ss_pred             ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEE-------CCEEEEEEe
Confidence            567999999999999976 799999999986655566788999999999999999999998865       568999999


Q ss_pred             ecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEe--cCCCceeEccCCccccccc
Q 028629          108 YVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL--DQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       108 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~--~~~~~~kl~df~~a~~~~~  185 (206)
                      |+++++|.+++....  ..+++..++.++.|++.||.|||+   .+|+|+||||+|||+  +.++.+||+|||++.....
T Consensus       167 ~~~~~~L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~  241 (373)
T 2x4f_A          167 YVDGGELFDRIIDES--YNLTELDTILFMKQICEGIRHMHQ---MYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKP  241 (373)
T ss_dssp             CCTTCEEHHHHHHTG--GGCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCT
T ss_pred             CCCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHHHEEEecCCCCcEEEEeCCCceecCC
Confidence            999999999886543  458999999999999999999999   799999999999999  5668999999999998876


Q ss_pred             cccccccccCccccCCCCC
Q 028629          186 AEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       186 ~~~~~~~~~~~~y~aPE~~  204 (206)
                      ........+|++|+|||..
T Consensus       242 ~~~~~~~~gt~~y~aPE~~  260 (373)
T 2x4f_A          242 REKLKVNFGTPEFLAPEVV  260 (373)
T ss_dssp             TCBCCCCCSSCTTCCHHHH
T ss_pred             ccccccccCCCcEeChhhc
Confidence            6666667899999999953

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=6.6e-33  Score=216.25  Aligned_cols=173  Identities=21%  Similarity=0.388  Sum_probs=138.0

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCC--ccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ....+|+..+.||+|+||.||+|.. ++..||+|++.....  ...+.+.+|+.++++++|+||+++++++..       
T Consensus        34 i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------  105 (309)
T 3p86_A           34 IPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQ-------  105 (309)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-------
T ss_pred             CChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-------
Confidence            3457899999999999999999987 588999999875432  234578899999999999999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCc--eeccCCccccEEecCCCceeEcc
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG--VFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~--i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                      .+..+++|||+++++|.+++........+++..++.++.|++.||.|||+   .+  ++|+||||+||++++++.+||+|
T Consensus       106 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~~~ivH~Dikp~NIll~~~~~~kL~D  182 (309)
T 3p86_A          106 PPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHN---RNPPIVHRNLKSPNLLVDKKYTVKVCD  182 (309)
T ss_dssp             TTCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHT---SSSCCCCTTCCGGGEEECTTCCEEECC
T ss_pred             CCceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHc---CCCCEECCCCChhhEEEeCCCcEEECC
Confidence            56789999999999999999875433458999999999999999999999   68  99999999999999999999999


Q ss_pred             CCccccccccc-cccccccCccccCCCCC
Q 028629          177 YNLPLLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ||+++...... ......++..|+|||..
T Consensus       183 fg~a~~~~~~~~~~~~~~gt~~y~aPE~~  211 (309)
T 3p86_A          183 FGLSRLKASTFLSSKSAAGTPEWMAPEVL  211 (309)
T ss_dssp             CC-----------------CCTTSCHHHH
T ss_pred             CCCCccccccccccccCCCCccccChhhh
Confidence            99998665432 33446789999999953

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=1.6e-32  Score=214.23  Aligned_cols=168  Identities=18%  Similarity=0.309  Sum_probs=142.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|+..+.||+|+||.||+|...+++.||+|.+....  ......+.+|++++++++||||+++++++.+       ..
T Consensus        20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------~~   92 (311)
T 3niz_A           20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHS-------ER   92 (311)
T ss_dssp             SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECC-------SS
T ss_pred             HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEcc-------CC
Confidence            58899999999999999999998789999999997543  2234678899999999999999999998865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..+++|||+++ +|.+.+....  ..+++..++.++.|++.||.|||+   .+|+|+||||+||+++.++.+||+|||++
T Consensus        93 ~~~lv~e~~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a  166 (311)
T 3niz_A           93 CLTLVFEFMEK-DLKKVLDENK--TGLQDSQIKIYLYQLLRGVAHCHQ---HRILHRDLKPQNLLINSDGALKLADFGLA  166 (311)
T ss_dssp             CEEEEEECCSE-EHHHHHHTCT--TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             EEEEEEcCCCC-CHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCchHhEEECCCCCEEEccCcCc
Confidence            79999999975 8888876643  458999999999999999999999   79999999999999999999999999999


Q ss_pred             cccccc-ccccccccCccccCCCC
Q 028629          181 LLAENA-EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~y~aPE~  203 (206)
                      ...... .......++..|+|||.
T Consensus       167 ~~~~~~~~~~~~~~~t~~y~aPE~  190 (311)
T 3niz_A          167 RAFGIPVRSYTHEVVTLWYRAPDV  190 (311)
T ss_dssp             EETTSCCC---CCCCCCTTCCHHH
T ss_pred             eecCCCcccccCCcccCCcCCHHH
Confidence            876543 33344578999999995

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=224.43  Aligned_cols=170  Identities=19%  Similarity=0.230  Sum_probs=145.6

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC--ccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ..++|+..+.||+|+||.||+|... +|..+|+|.+.....  ...+.+.+|+.+++.++||||+++++++.+       
T Consensus         9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-------   81 (444)
T 3soa_A            9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISE-------   81 (444)
T ss_dssp             HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEEC-------
T ss_pred             ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEE-------
Confidence            4577999999999999999999976 799999999976542  234568899999999999999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec---CCCceeEc
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD---QNLVAKIS  175 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~---~~~~~kl~  175 (206)
                      .+..+++|||+++++|.+.+...   ..+++..+..++.|++.||.|||+   .+|+||||||+|||++   +++.+||+
T Consensus        82 ~~~~~lv~E~~~gg~L~~~i~~~---~~~~e~~~~~i~~qil~aL~~lH~---~givHrDlKp~NIll~~~~~~~~vkL~  155 (444)
T 3soa_A           82 EGHHYLIFDLVTGGELFEDIVAR---EYYSEADASHCIQQILEAVLHCHQ---MGVVHRNLKPENLLLASKLKGAAVKLA  155 (444)
T ss_dssp             SSEEEEEECCCBCCBHHHHHHHC---SCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSSTTEEESBSSTTCCEEEC
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEeccCCCCcEEEc
Confidence            67899999999999999998876   458999999999999999999999   7999999999999998   45789999


Q ss_pred             cCCccccccccc-cccccccCccccCCCCC
Q 028629          176 SYNLPLLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       176 df~~a~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      |||++....... ......||++|+|||..
T Consensus       156 DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l  185 (444)
T 3soa_A          156 DFGLAIEVEGEQQAWFGFAGTPGYLSPEVL  185 (444)
T ss_dssp             CCSSCBCCCTTCCBCCCSCSCGGGCCHHHH
T ss_pred             cCceeEEecCCCceeecccCCcccCCHHHh
Confidence            999998776543 33446899999999953

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=5.1e-32  Score=210.56  Aligned_cols=183  Identities=32%  Similarity=0.527  Sum_probs=156.8

Q ss_pred             ccceeCHHHHHHHhcCCccc------ceeccCcceeEEEEEEeCCcEEEEEEeecCC----CccHHHHHHHHHHHhccCC
Q 028629           10 AYRTFSLEELEEATNNFDTS------AFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK----SHSTRNFMHHIELISKLRH   79 (206)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~------~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~h   79 (206)
                      ..+.+++.++..++++|...      +.||+|+||.||+|.. ++..||+|.+....    ....+.+.+|+.++++++|
T Consensus        11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h   89 (307)
T 2nru_A           11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQH   89 (307)
T ss_dssp             CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCC
T ss_pred             CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCC
Confidence            45788999999999999877      8999999999999987 58899999986432    2335678899999999999


Q ss_pred             CceeeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCC
Q 028629           80 CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNL  159 (206)
Q Consensus        80 ~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl  159 (206)
                      |||+++++++..       .+..+++|||+++++|.+++........+++..++.++.|++.||.|||+   .+++|+||
T Consensus        90 ~~i~~~~~~~~~-------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dl  159 (307)
T 2nru_A           90 ENLVELLGFSSD-------GDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHE---NHHIHRDI  159 (307)
T ss_dssp             TTBCCEEEEECS-------SSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCC
T ss_pred             CCeEEEEEEEec-------CCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhc---CCeecCCC
Confidence            999999998865       56789999999999999998754333568999999999999999999999   79999999


Q ss_pred             ccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCC
Q 028629          160 KITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       160 ~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                      +|+||++++++.++|+|||++.......   ......++..|+|||.
T Consensus       160 kp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~  206 (307)
T 2nru_A          160 KSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEA  206 (307)
T ss_dssp             CGGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHH
T ss_pred             CHHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHH
Confidence            9999999999999999999998765432   2333578899999995

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=7.4e-33  Score=221.12  Aligned_cols=169  Identities=18%  Similarity=0.300  Sum_probs=137.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHH-HhccCCCceeeeccccccccccCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIEL-ISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~-l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .++|+..+.||+|+||.||+|+.. ++..||+|++.+..   ......+..|..+ ++.++|+||+++++++.+      
T Consensus        37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~------  110 (373)
T 2r5t_A           37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQT------  110 (373)
T ss_dssp             GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEEC------
T ss_pred             hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEe------
Confidence            467999999999999999999986 68899999997543   2233455667666 577899999999998865      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       .+.++++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+||+||
T Consensus       111 -~~~~~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIll~~~g~ikL~DF  183 (373)
T 2r5t_A          111 -ADKLYFVLDYINGGELFYHLQRE---RCFLEPRARFYAAEIASALGYLHS---LNIVYRDLKPENILLDSQGHIVLTDF  183 (373)
T ss_dssp             -SSEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCC
T ss_pred             -CCEEEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEECCCCCEEEeeC
Confidence             67899999999999999998765   358899999999999999999999   79999999999999999999999999


Q ss_pred             Ccccccc-ccccccccccCccccCCCCC
Q 028629          178 NLPLLAE-NAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~-~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |+++... .........||+.|+|||..
T Consensus       184 G~a~~~~~~~~~~~~~~gt~~y~aPE~~  211 (373)
T 2r5t_A          184 GLCKENIEHNSTTSTFCGTPEYLAPEVL  211 (373)
T ss_dssp             CBCGGGBCCCCCCCSBSCCCCCCCHHHH
T ss_pred             ccccccccCCCccccccCCccccCHHHh
Confidence            9998643 33445567899999999953

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=4.7e-33  Score=215.35  Aligned_cols=171  Identities=20%  Similarity=0.383  Sum_probs=141.6

Q ss_pred             hcCCcccceeccCcceeEEEEEE----e-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRL----K-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~----~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .++|+..+.||+|+||.||+|++    . ++..||+|.+........+.+.+|+.++++++|+||+++++++..     .
T Consensus         9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~   83 (295)
T 3ugc_A            9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYS-----A   83 (295)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECH-----H
T ss_pred             HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-----C
Confidence            57899999999999999999984    2 688999999986655556788999999999999999999998754     1


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      .....+++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+||
T Consensus        84 ~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~kl~Df  158 (295)
T 3ugc_A           84 GRRNLKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDF  158 (295)
T ss_dssp             HHTSCEEEEECCTTCBHHHHHHHCG--GGCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCC
T ss_pred             CCCceEEEEEeCCCCCHHHHHHhcc--cccCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHhhEEEcCCCeEEEccC
Confidence            1345899999999999999997753  458999999999999999999999   79999999999999999999999999


Q ss_pred             Cccccccccc----cccccccCccccCCCC
Q 028629          178 NLPLLAENAE----KVGHVTPYSGSINPTN  203 (206)
Q Consensus       178 ~~a~~~~~~~----~~~~~~~~~~y~aPE~  203 (206)
                      |++.......    ......++..|+|||.
T Consensus       159 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  188 (295)
T 3ugc_A          159 GLTKVLPQDKEFFKVKEPGESPIFWYAPES  188 (295)
T ss_dssp             CSCC-------------CTTCGGGGCCHHH
T ss_pred             cccccccCCcceeeeccCCCCccceeCcHH
Confidence            9998765432    2222356667999995

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=1e-32  Score=216.70  Aligned_cols=169  Identities=17%  Similarity=0.271  Sum_probs=136.3

Q ss_pred             hcCCcccceeccCcceeEEEEEE----eCCcEEEEEEeecCC----CccHHHHHHHHHHHhccCCCceeeeccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRL----KNGTFIAIRCLKMKK----SHSTRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~----~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   94 (206)
                      .++|+..+.||+|+||.||++..    .+++.||+|++....    ......+.+|+.+++.++|+||+++++++..   
T Consensus        16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~---   92 (327)
T 3a62_A           16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQT---   92 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEEC---
T ss_pred             HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEc---
Confidence            57899999999999999999996    368999999997542    2234567789999999999999999998865   


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeE
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI  174 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl  174 (206)
                          .+..+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.+||
T Consensus        93 ----~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~Dlkp~Nill~~~~~~kl  162 (327)
T 3a62_A           93 ----GGKLYLILEYLSGGELFMQLERE---GIFMEDTACFYLAEISMALGHLHQ---KGIIYRDLKPENIMLNHQGHVKL  162 (327)
T ss_dssp             ----SSCEEEEEECCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCTTTEEECTTSCEEE
T ss_pred             ----CCEEEEEEeCCCCCcHHHHHHhC---CCCCHHHHHHHHHHHHHHHHHHHh---CCEEcccCCHHHeEECCCCcEEE
Confidence                56799999999999999999765   358899999999999999999999   79999999999999999999999


Q ss_pred             ccCCcccccccc-ccccccccCccccCCCCC
Q 028629          175 SSYNLPLLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       175 ~df~~a~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      +|||++...... .......++..|+|||..
T Consensus       163 ~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~  193 (327)
T 3a62_A          163 TDFGLCKESIHDGTVTHTFCGTIEYMAPEIL  193 (327)
T ss_dssp             CCCSCC----------CTTSSCCTTSCHHHH
T ss_pred             EeCCcccccccCCccccccCCCcCccCHhhC
Confidence            999999864332 334456789999999953

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=3.1e-32  Score=213.33  Aligned_cols=169  Identities=19%  Similarity=0.288  Sum_probs=148.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc------cHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH------STRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      .++|...+.||+|+||.||+|... ++..||+|.+......      ..+.+.+|+.+++++.|+||+++++++..    
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----   86 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYEN----   86 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC----
T ss_pred             hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEec----
Confidence            567999999999999999999976 7999999999754321      35678999999999999999999998865    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC----c
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL----V  171 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~----~  171 (206)
                         ....+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++    .
T Consensus        87 ---~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~lH~---~~ivH~dikp~NIl~~~~~~~~~~  157 (321)
T 2a2a_A           87 ---RTDVVLILELVSGGELFDFLAQK---ESLSEEEATSFIKQILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIPH  157 (321)
T ss_dssp             ---SSEEEEEECCCCSCBHHHHHHTC---SCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCTTSSSCC
T ss_pred             ---CCEEEEEEEcCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCChHHEEEecCCCCcCC
Confidence               56899999999999999999865   458999999999999999999999   7999999999999999887    7


Q ss_pred             eeEccCCccccccccccccccccCccccCCCCC
Q 028629          172 AKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       172 ~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ++|+|||++.............++..|+|||..
T Consensus       158 ~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~  190 (321)
T 2a2a_A          158 IKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIV  190 (321)
T ss_dssp             EEECCCTTCEECCTTCCCCCCCSCGGGCCHHHH
T ss_pred             EEEccCccceecCccccccccCCCCCccCcccc
Confidence            999999999887766555567899999999953

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=2.1e-32  Score=221.68  Aligned_cols=170  Identities=17%  Similarity=0.256  Sum_probs=137.4

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC--------ccHHHHHHHHHHHhccCCCceeeecccccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--------HSTRNFMHHIELISKLRHCHLVSALGHCFE   91 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~--------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   91 (206)
                      ...++|...+.||+|+||.||+|... +++.||+|.+.....        .....+.+|+.++++++||||+++++++. 
T Consensus       132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-  210 (419)
T 3i6u_A          132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-  210 (419)
T ss_dssp             HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-
T ss_pred             hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-
Confidence            44688999999999999999999976 789999999975421        11234788999999999999999999863 


Q ss_pred             ccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC--
Q 028629           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN--  169 (206)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~--  169 (206)
                             .+..+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.+  
T Consensus       211 -------~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~NIll~~~~~  277 (419)
T 3i6u_A          211 -------AEDYYIVLELMEGGELFDKVVGN---KRLKEATCKLYFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEE  277 (419)
T ss_dssp             -------SSEEEEEEECCTTCBGGGGTSSS---CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSS
T ss_pred             -------cCceEEEEEcCCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEecCCC
Confidence                   34589999999999999988765   458999999999999999999999   799999999999999754  


Q ss_pred             -CceeEccCCccccccccccccccccCccccCCCCC
Q 028629          170 -LVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       170 -~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                       ..+||+|||+++............+|++|+|||..
T Consensus       278 ~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~  313 (419)
T 3i6u_A          278 DCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVL  313 (419)
T ss_dssp             SCCEEECCSSTTTSCC-----------CTTCCTTTT
T ss_pred             cceEEEeecccceecCCCccccccCCCCCccCceee
Confidence             45999999999988766656667899999999975

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.6e-33  Score=217.22  Aligned_cols=168  Identities=17%  Similarity=0.163  Sum_probs=139.0

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC--ccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ++|+..+.||+|+||.||+|... +++.||+|++.....  ........|+..+.++ .|+||+++++++..       .
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~-------~  129 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEE-------G  129 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-------T
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEe-------C
Confidence            67999999999999999999987 799999999864432  2233455566666665 89999999999865       6


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +..+++||++ +++|.+++....  ..+++..++.++.|++.||.|||+   .+|+|+||||+|||++.++.+||+|||+
T Consensus       130 ~~~~lv~e~~-~~~L~~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kl~DFG~  203 (311)
T 3p1a_A          130 GILYLQTELC-GPSLQQHCEAWG--ASLPEAQVWGYLRDTLLALAHLHS---QGLVHLDVKPANIFLGPRGRCKLGDFGL  203 (311)
T ss_dssp             TEEEEEEECC-CCBHHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECGGGCEEECCCTT
T ss_pred             CEEEEEEecc-CCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHEEECCCCCEEEcccee
Confidence            7899999999 568988887643  458999999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +.............+|.+|+|||..
T Consensus       204 a~~~~~~~~~~~~~gt~~y~aPE~~  228 (311)
T 3p1a_A          204 LVELGTAGAGEVQEGDPRYMAPELL  228 (311)
T ss_dssp             CEECC------CCCCCGGGCCGGGG
T ss_pred             eeecccCCCCcccCCCccccCHhHh
Confidence            9887766656667799999999964

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=221.64  Aligned_cols=173  Identities=22%  Similarity=0.338  Sum_probs=149.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|...+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++|+||+++++++..     ....
T Consensus         8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-----~~~~   82 (396)
T 4eut_A            8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEE-----TTTR   82 (396)
T ss_dssp             SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----TTTC
T ss_pred             CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeecc-----CCCC
Confidence            467999999999999999999986 69999999997543 3345677899999999999999999998754     2244


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEe----cCCCceeEcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL----DQNLVAKISS  176 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~----~~~~~~kl~d  176 (206)
                      ..+++|||+++++|.+++........+++..++.++.|++.||.|||+   .+|+|+||||+||++    +.++.+||+|
T Consensus        83 ~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~~kL~D  159 (396)
T 4eut_A           83 HKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTD  159 (396)
T ss_dssp             CEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEECTTSCEEEEECC
T ss_pred             eeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHH---CCEEECCcCHHHEEEeecCCCceeEEEec
Confidence            789999999999999999765332348999999999999999999999   799999999999999    6778899999


Q ss_pred             CCccccccccccccccccCccccCCCC
Q 028629          177 YNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       177 f~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      ||+++............++..|+|||.
T Consensus       160 FG~a~~~~~~~~~~~~~gt~~y~aPE~  186 (396)
T 4eut_A          160 FGAARELEDDEQFVSLYGTEEYLHPDM  186 (396)
T ss_dssp             GGGCEECCCGGGSSCSSSCCTTCCHHH
T ss_pred             CCCceEccCCCccccccCCccccCHHH
Confidence            999998776666666789999999995

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=1.8e-32  Score=214.87  Aligned_cols=170  Identities=17%  Similarity=0.327  Sum_probs=143.2

Q ss_pred             hcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      .++|+..+.||+|+||.||+|... ++.||+|++.... ........|+.++++++||||+++++++....   .....+
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~---~~~~~~   97 (322)
T 3soc_A           23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGT---SVDVDL   97 (322)
T ss_dssp             TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC---SSSEEE
T ss_pred             hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhcceeccCC---CCCceE
Confidence            578999999999999999999875 8899999996442 33345566899999999999999999886511   113457


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCC----------ceeccCCccccEEecCCCce
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP----------GVFSNNLKITDILLDQNLVA  172 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~----------~i~h~dl~p~nil~~~~~~~  172 (206)
                      +++|||+++++|.+++...    .+++..++.++.|++.||.|||+   .          +++|+||||+||++++++.+
T Consensus        98 ~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~qi~~al~~LH~---~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~  170 (322)
T 3soc_A           98 WLITAFHEKGSLSDFLKAN----VVSWNELCHIAETMARGLAYLHE---DIPGLKDGHKPAISHRDIKSKNVLLKNNLTA  170 (322)
T ss_dssp             EEEEECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHTC---CEEEETTEEECEEECSCCSGGGEEECTTCCE
T ss_pred             EEEEecCCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHh---hccccccccCCCEEeCCCChHhEEECCCCeE
Confidence            9999999999999999774    48999999999999999999999   7          99999999999999999999


Q ss_pred             eEccCCccccccccc---cccccccCccccCCCCC
Q 028629          173 KISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       173 kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      ||+|||+++......   ......+|..|+|||..
T Consensus       171 kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~  205 (322)
T 3soc_A          171 CIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVL  205 (322)
T ss_dssp             EECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHH
T ss_pred             EEccCCcccccccccCccccccCccCccccCHhhc
Confidence            999999998765432   22335789999999964

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=3.3e-32  Score=207.80  Aligned_cols=169  Identities=21%  Similarity=0.329  Sum_probs=145.0

Q ss_pred             HhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ..++|+..+.||+|+||.||+|...++..||+|.+... ....+.+.+|+.++++++|+||+++++++..       ...
T Consensus         6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-------~~~   77 (268)
T 3sxs_A            6 KREEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEG-SMSEDEFFQEAQTMMKLSHPKLVKFYGVCSK-------EYP   77 (268)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBT-TBCHHHHHHHHHHHHHCCCTTBCCEEEEECS-------SSS
T ss_pred             chhheeeeeeeccCCCceEEEEEecCceeEEEEEeccC-CCcHHHHHHHHHHHHhCCCCCEeeEEEEEcc-------CCc
Confidence            35789999999999999999999888888999999744 3345678999999999999999999998854       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .+++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        78 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~  152 (268)
T 3sxs_A           78 IYIVTEYISNGCLLNYLRSHG--KGLEPSQLLEMCYDVCEGMAFLES---HQFIHRDLAARNCLVDRDLCVKVSDFGMTR  152 (268)
T ss_dssp             EEEEEECCTTCBHHHHHHHHG--GGCCHHHHHHHHHHHHHHHHHHHH---TTEEESSCSGGGEEECTTCCEEECCTTCEE
T ss_pred             eEEEEEccCCCcHHHHHHHcC--CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCcCcceEEECCCCCEEEccCccce
Confidence            999999999999999987642  458999999999999999999999   799999999999999999999999999998


Q ss_pred             ccccccc--ccccccCccccCCCC
Q 028629          182 LAENAEK--VGHVTPYSGSINPTN  203 (206)
Q Consensus       182 ~~~~~~~--~~~~~~~~~y~aPE~  203 (206)
                      .......  .....++..|+|||.
T Consensus       153 ~~~~~~~~~~~~~~~~~~y~aPE~  176 (268)
T 3sxs_A          153 YVLDDQYVSSVGTKFPVKWSAPEV  176 (268)
T ss_dssp             ECCTTCEEECCSCCCCGGGCCHHH
T ss_pred             ecchhhhhcccCCCcCcccCCHHH
Confidence            7654432  222344567999995

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=1.7e-32  Score=224.55  Aligned_cols=172  Identities=16%  Similarity=0.289  Sum_probs=133.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|...+.||+|+||.||+|... +++.||+|++....  ....+.+.+|+.+++.++|+||+++++++.....  ...
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--~~~  129 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDV--EKF  129 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCT--TTC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCc--ccC
Confidence            468999999999999999999976 79999999996432  2345678899999999999999999998864221  123


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ..++++||++. ++|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+
T Consensus       130 ~~~~lv~e~~~-~~L~~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~---~~iiHrDlKp~NILl~~~~~~kl~DFGl  202 (458)
T 3rp9_A          130 DELYVVLEIAD-SDFKKLFRTP---VYLTELHIKTLLYNLLVGVKYVHS---AGILHRDLKPANCLVNQDCSVKVCDFGL  202 (458)
T ss_dssp             CCEEEEECCCS-EEHHHHHHSS---CCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTCCEEECCCTT
T ss_pred             ceEEEEEeccc-cchhhhcccC---CCCCHHHHHHHHHHHHHHHHHHHh---CCcCCCCCChhhEEECCCCCEeeccccc
Confidence            57999999984 6999988765   458999999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccc----------------------------cccccccCccccCCCC
Q 028629          180 PLLAENAE----------------------------KVGHVTPYSGSINPTN  203 (206)
Q Consensus       180 a~~~~~~~----------------------------~~~~~~~~~~y~aPE~  203 (206)
                      ++......                            ......+|++|+|||.
T Consensus       203 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~  254 (458)
T 3rp9_A          203 ARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPEL  254 (458)
T ss_dssp             CBCTTSCTTCCCCCC---------------------------CCCTTCCHHH
T ss_pred             chhccCccccccccccCccccccccccccccccccccccCCcccccccChHH
Confidence            98765321                            1233577999999994

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=2.4e-32  Score=214.52  Aligned_cols=169  Identities=22%  Similarity=0.401  Sum_probs=140.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-C---CcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-N---GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~---~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .++|...+.||+|+||.||+|... +   +..||+|.+.... ....+.+.+|+.++++++|+||+++++++..      
T Consensus        48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~------  121 (325)
T 3kul_A           48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTR------  121 (325)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECG------
T ss_pred             hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEe------
Confidence            367888999999999999999975 3   4469999997543 3334678899999999999999999999865      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       .+..+++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+|+|+||||+||+++.++.++|+||
T Consensus       122 -~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Df  195 (325)
T 3kul_A          122 -GRLAMIVTEYMENGSLDTFLRTHD--GQFTIMQLVGMLRGVGAGMRYLSD---LGYVHRDLAARNVLVDSNLVCKVSDF  195 (325)
T ss_dssp             -GGCCEEEEECCTTCBHHHHHHTTT--TCSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCC
T ss_pred             -CCccEEEeeCCCCCcHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCcceEEECCCCCEEECCC
Confidence             567899999999999999997543  358999999999999999999999   79999999999999999999999999


Q ss_pred             Cccccccccc----cccccccCccccCCCC
Q 028629          178 NLPLLAENAE----KVGHVTPYSGSINPTN  203 (206)
Q Consensus       178 ~~a~~~~~~~----~~~~~~~~~~y~aPE~  203 (206)
                      |++.......    ......++..|+|||.
T Consensus       196 g~a~~~~~~~~~~~~~~~~~~t~~y~aPE~  225 (325)
T 3kul_A          196 GLSRVLEDDPDAAYTTTGGKIPIRWTAPEA  225 (325)
T ss_dssp             SSCEECC----CCEECC---CCGGGSCHHH
T ss_pred             CcccccccCccceeeccCCCCcccccCHhH
Confidence            9998765432    1222344667999995

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=216.99  Aligned_cols=170  Identities=14%  Similarity=0.202  Sum_probs=148.4

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc--------cHHHHHHHHHHHhccCCCceeeeccccccc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH--------STRNFMHHIELISKLRHCHLVSALGHCFEC   92 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~--------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   92 (206)
                      ..++|+..+.||+|+||.||+|... ++..||+|.+......        ....+.+|+.++++++|+||+++++++.. 
T Consensus        22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~-  100 (335)
T 3dls_A           22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFEN-  100 (335)
T ss_dssp             HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEEC-
T ss_pred             cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEee-
Confidence            3568999999999999999999976 7899999999765321        23356779999999999999999998865 


Q ss_pred             cccCCCCceEEEEEeecCCC-CHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc
Q 028629           93 YFDDSSVSRIFLIFEYVPNG-TLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV  171 (206)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~  171 (206)
                            .+..+++||++.++ +|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||||+||++++++.
T Consensus       101 ------~~~~~lv~e~~~~g~~l~~~~~~~---~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~  168 (335)
T 3dls_A          101 ------QGFFQLVMEKHGSGLDLFAFIDRH---PRLDEPLASYIFRQLVSAVGYLRL---KDIIHRDIKDENIVIAEDFT  168 (335)
T ss_dssp             ------SSEEEEEEECCTTSCBHHHHHHTC---CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSC
T ss_pred             ------CCEEEEEEEeCCCCccHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeEEeccCHHHEEEcCCCc
Confidence                  66899999999766 999999876   458999999999999999999999   79999999999999999999


Q ss_pred             eeEccCCccccccccccccccccCccccCCCCC
Q 028629          172 AKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       172 ~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +||+|||++.............+|..|+|||..
T Consensus       169 ~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~  201 (335)
T 3dls_A          169 IKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVL  201 (335)
T ss_dssp             EEECCCTTCEECCTTCCBCEECSCGGGCCHHHH
T ss_pred             EEEeecccceECCCCCceeccCCCccccChhhh
Confidence            999999999988776666667899999999953

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=2e-32  Score=211.31  Aligned_cols=167  Identities=19%  Similarity=0.314  Sum_probs=140.6

Q ss_pred             cCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ++|+..+.||+|+||.||+|...+++.||+|.+....  ....+.+.+|+.++++++||||+++++++..       .+.
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~~   74 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHT-------KKR   74 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEEC-------SSC
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEcc-------CCe
Confidence            5799999999999999999998779999999997543  2234678899999999999999999998865       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .+++||++++ +|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.+||+|||++.
T Consensus        75 ~~lv~e~~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  148 (288)
T 1ob3_A           75 LVLVFEHLDQ-DLKKLLDVCE--GGLESVTAKSFLLQLLNGIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLAR  148 (288)
T ss_dssp             EEEEEECCSE-EHHHHHHTST--TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCTTHHH
T ss_pred             EEEEEEecCC-CHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEEeECcccc
Confidence            9999999976 9999887643  458899999999999999999999   799999999999999999999999999998


Q ss_pred             ccccc-ccccccccCccccCCCC
Q 028629          182 LAENA-EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       182 ~~~~~-~~~~~~~~~~~y~aPE~  203 (206)
                      ..... .......++..|+|||.
T Consensus       149 ~~~~~~~~~~~~~~t~~y~aPE~  171 (288)
T 1ob3_A          149 AFGIPVRKYTHEIVTLWYRAPDV  171 (288)
T ss_dssp             HHCC---------CCCTTCCHHH
T ss_pred             ccCccccccccccccccccCchh
Confidence            76543 23344578899999995

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=3.2e-32  Score=226.23  Aligned_cols=172  Identities=18%  Similarity=0.266  Sum_probs=148.2

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|...+.||+|+||.||+|... +|+.||+|++....   ......+.+|+.++++++||||+++++++..       
T Consensus       184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~-------  256 (543)
T 3c4z_A          184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFET-------  256 (543)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-------
T ss_pred             hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEee-------
Confidence            367899999999999999999986 79999999997542   3345678899999999999999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCC-CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGH-AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      ...++++|||+++++|.+++.... ....+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+||+||
T Consensus       257 ~~~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~---~gIvHrDLKP~NILl~~~g~vkL~DF  333 (543)
T 3c4z_A          257 KTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQ---RNIIYRDLKPENVLLDDDGNVRISDL  333 (543)
T ss_dssp             SSEEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCC
T ss_pred             CCEEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHH---cCCcccCCChHHEEEeCCCCEEEeec
Confidence            568999999999999999987642 12468999999999999999999999   79999999999999999999999999


Q ss_pred             Ccccccccccc-ccccccCccccCCCCC
Q 028629          178 NLPLLAENAEK-VGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~-~~~~~~~~~y~aPE~~  204 (206)
                      |++........ .....||+.|+|||..
T Consensus       334 Gla~~~~~~~~~~~~~~GT~~Y~APE~l  361 (543)
T 3c4z_A          334 GLAVELKAGQTKTKGYAGTPGFMAPELL  361 (543)
T ss_dssp             TTCEECCTTCCCBCCCCSCTTTSCHHHH
T ss_pred             ceeeeccCCCcccccccCCccccChhhh
Confidence            99987765432 3345899999999953

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.98  E-value=2e-32  Score=216.98  Aligned_cols=168  Identities=20%  Similarity=0.296  Sum_probs=129.6

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ..++|...+.||+|+||.||+|... +++.||+|++....  ..+.+.+|+.++++++|+||+++++++..       ..
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~-------~~  121 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFET-------PT  121 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEEC-------SS
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEec-------CC
Confidence            3567999999999999999999986 68899999997443  34567789999999999999999999865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC---CCceeEccC
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---NLVAKISSY  177 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~---~~~~kl~df  177 (206)
                      ..+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.   ++.+||+||
T Consensus       122 ~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dikp~NIll~~~~~~~~~kl~Df  195 (349)
T 2w4o_A          122 EISLVLELVTGGELFDRIVEK---GYYSERDAADAVKQILEAVAYLHE---NGIVHRDLKPENLLYATPAPDAPLKIADF  195 (349)
T ss_dssp             EEEEEECCCCSCBHHHHHTTC---SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEESSSSTTCCEEECCC
T ss_pred             eEEEEEEeCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCcccEEEecCCCCCCEEEccC
Confidence            799999999999999998765   458999999999999999999999   79999999999999975   789999999


Q ss_pred             CccccccccccccccccCccccCCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |++.............++..|+|||..
T Consensus       196 g~a~~~~~~~~~~~~~gt~~y~aPE~~  222 (349)
T 2w4o_A          196 GLSKIVEHQVLMKTVCGTPGYCAPEIL  222 (349)
T ss_dssp             C----------------CGGGSCHHHH
T ss_pred             ccccccCcccccccccCCCCccCHHHh
Confidence            999987665555567899999999953

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.98  E-value=1.6e-32  Score=217.60  Aligned_cols=172  Identities=15%  Similarity=0.228  Sum_probs=145.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-----CccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-----SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      .++|+..+.||+|+||.||+|... +++.||+|++....     ....+.+.+|+.+++.++||||+++++++..     
T Consensus        23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-----   97 (351)
T 3c0i_A           23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSS-----   97 (351)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----
T ss_pred             ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEe-----
Confidence            467999999999999999999976 79999999986432     2245778999999999999999999998865     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCC-CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC---ce
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGH-AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL---VA  172 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~---~~  172 (206)
                        .+..+++|||+++++|.+.+.... ....+++..++.++.|++.||.|||+   .+|+|+||||+||+++.++   .+
T Consensus        98 --~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivHrDlkp~NIl~~~~~~~~~v  172 (351)
T 3c0i_A           98 --DGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHD---NNIIHRDVKPHCVLLASKENSAPV  172 (351)
T ss_dssp             --TTEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECSSSTTCCE
T ss_pred             --CCEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCChHHeEEecCCCCCcE
Confidence              568999999999999988775421 11358999999999999999999999   7999999999999998654   49


Q ss_pred             eEccCCccccccccc-cccccccCccccCCCCC
Q 028629          173 KISSYNLPLLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       173 kl~df~~a~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ||+|||++....... ......+|+.|+|||..
T Consensus       173 kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~  205 (351)
T 3c0i_A          173 KLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVV  205 (351)
T ss_dssp             EECCCTTCEECCTTSCBCCCCCSCGGGCCHHHH
T ss_pred             EEecCcceeEecCCCeeecCCcCCcCccCHHHH
Confidence            999999998776543 23446799999999963

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.98  E-value=6.7e-33  Score=226.26  Aligned_cols=169  Identities=18%  Similarity=0.295  Sum_probs=136.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC---CCccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|+..+.||+|+||.||+|... ++..||+|++...   .......+.+|+.+++.++|+||+++++++..       
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~-------  219 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQT-------  219 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEE-------
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEee-------
Confidence            467999999999999999999976 7999999999753   23344567789999999999999999998876       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+.+++||||+++++|.+++...   ..+++..+..++.|++.||.|||+.  .+|+||||||+|||++.++.+||+|||
T Consensus       220 ~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~--~giiHrDlkp~NIll~~~~~~kl~DFG  294 (446)
T 4ejn_A          220 HDRLCFVMEYANGGELFFHLSRE---RVFSEDRARFYGAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFG  294 (446)
T ss_dssp             TTEEEEEECCCSSCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHH--TCCCCCCCCGGGEEECSSSCEEECCCC
T ss_pred             CCEEEEEEeeCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHhhc--CCEEECCCCHHHEEECCCCCEEEccCC
Confidence            56899999999999999998765   4589999999999999999999962  489999999999999999999999999


Q ss_pred             cccccc-ccccccccccCccccCCCC
Q 028629          179 LPLLAE-NAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       179 ~a~~~~-~~~~~~~~~~~~~y~aPE~  203 (206)
                      +++... .........||++|+|||.
T Consensus       295 ~a~~~~~~~~~~~~~~gt~~y~aPE~  320 (446)
T 4ejn_A          295 LCKEGIKDGATMKTFCGTPEYLAPEV  320 (446)
T ss_dssp             CCCTTCC-----CCSSSCGGGCCHHH
T ss_pred             CceeccCCCcccccccCCccccCHhh
Confidence            998643 3334455789999999995

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.98  E-value=2.5e-32  Score=222.02  Aligned_cols=172  Identities=16%  Similarity=0.243  Sum_probs=143.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|...+.||+|+||.||+|... +++.||+|++....  ....+.+.+|+.+++.++|+||+++++++....+.  ..
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~--~~  102 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLL--KF  102 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTT--TC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCC--cC
Confidence            678999999999999999999976 78999999997432  23456788999999999999999999988652211  12


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...+++||++. ++|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+
T Consensus       103 ~~~~lv~e~~~-~~L~~~~~~~---~~l~~~~~~~i~~qil~aL~~LH~---~givHrDlkp~NILl~~~~~~kL~DFGl  175 (432)
T 3n9x_A          103 DELYIVLEIAD-SDLKKLFKTP---IFLTEEHIKTILYNLLLGENFIHE---SGIIHRDLKPANCLLNQDCSVKVCDFGL  175 (432)
T ss_dssp             CCEEEEEECCS-EEHHHHHHSS---CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             CeEEEEEecCC-cCHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHeEECCCCCEEEccCCC
Confidence            56899999986 5999999765   458999999999999999999999   7999999999999999999999999999


Q ss_pred             ccccccccc-----------------------ccccccCccccCCCC
Q 028629          180 PLLAENAEK-----------------------VGHVTPYSGSINPTN  203 (206)
Q Consensus       180 a~~~~~~~~-----------------------~~~~~~~~~y~aPE~  203 (206)
                      ++.......                       .....+|++|+|||.
T Consensus       176 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~  222 (432)
T 3n9x_A          176 ARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPEL  222 (432)
T ss_dssp             CEEC-------------------------------CCCCCTTCCHHH
T ss_pred             cccccccccccccccccccccccccccchhccccCCCCCccccCHHH
Confidence            987654321                       245688999999995

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.98  E-value=5.5e-32  Score=209.64  Aligned_cols=169  Identities=19%  Similarity=0.377  Sum_probs=140.2

Q ss_pred             HhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhc--cCCCceeeeccccccccccCCCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISK--LRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ..++|+..+.||+|+||.||+|.. +++.||+|++...   ....+..|.+++..  ++|+||+++++++....   ...
T Consensus         6 ~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~---~~~   78 (301)
T 3q4u_A            6 VARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSR---HSS   78 (301)
T ss_dssp             CGGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEE---TTE
T ss_pred             ccCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeecccc---CCC
Confidence            357899999999999999999988 6899999998643   33455566666666  78999999999875411   224


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHh--------cCCCCceeccCCccccEEecCCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLH--------TGIVPGVFSNNLKITDILLDQNLV  171 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH--------~~~~~~i~h~dl~p~nil~~~~~~  171 (206)
                      ...+++|||+++++|.+++..    ..+++..++.++.|++.||.|||        +   .+++|+||||+||++++++.
T Consensus        79 ~~~~lv~e~~~~g~L~~~l~~----~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~---~~ivH~Dlkp~Nill~~~~~  151 (301)
T 3q4u_A           79 TQLWLITHYHEMGSLYDYLQL----TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGK---PAIAHRDLKSKNILVKKNGQ  151 (301)
T ss_dssp             EEEEEEECCCTTCBHHHHHTT----CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCB---CEEECSCCCGGGEEECTTSC
T ss_pred             ceeEEehhhccCCCHHHHHhh----cccCHHHHHHHHHHHHHHHHHHHHhhhhccCC---CCeecCCCChHhEEEcCCCC
Confidence            568999999999999999965    35899999999999999999999        7   79999999999999999999


Q ss_pred             eeEccCCcccccccccc-----ccccccCccccCCCCC
Q 028629          172 AKISSYNLPLLAENAEK-----VGHVTPYSGSINPTNS  204 (206)
Q Consensus       172 ~kl~df~~a~~~~~~~~-----~~~~~~~~~y~aPE~~  204 (206)
                      +||+|||++........     .....+|..|+|||..
T Consensus       152 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  189 (301)
T 3q4u_A          152 CCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVL  189 (301)
T ss_dssp             EEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHH
T ss_pred             EEEeeCCCeeecccccccccccccccccccceeChhhh
Confidence            99999999986654332     2234789999999964

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.98  E-value=4.3e-32  Score=216.59  Aligned_cols=171  Identities=20%  Similarity=0.412  Sum_probs=142.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEe--------CCcEEEEEEeecCC-CccHHHHHHHHHHHhcc-CCCceeeeccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK--------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFEC   92 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~--------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~   92 (206)
                      .++|...+.||+|+||.||+|...        ++..||+|.+.... ....+.+.+|+.+++.+ +||||+++++++.. 
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~-  158 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ-  158 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECS-
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEcc-
Confidence            367889999999999999999863        34579999997543 23346789999999999 89999999998865 


Q ss_pred             cccCCCCceEEEEEeecCCCCHHHHHhcCCC-------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCC
Q 028629           93 YFDDSSVSRIFLIFEYVPNGTLRSWISEGHA-------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNL  159 (206)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl  159 (206)
                            .+.++++|||+++++|.+++.....             ...+++..++.++.|++.||.|||+   .+|+||||
T Consensus       159 ------~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDl  229 (370)
T 2psq_A          159 ------DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRDL  229 (370)
T ss_dssp             ------SSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCC
T ss_pred             ------CCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCeecccc
Confidence                  5679999999999999999976431             1347899999999999999999999   79999999


Q ss_pred             ccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCC
Q 028629          160 KITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       160 ~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                      ||+|||+++++.+||+|||+++......   ......++..|+|||.
T Consensus       230 kp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~  276 (370)
T 2psq_A          230 AARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEA  276 (370)
T ss_dssp             CGGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHH
T ss_pred             chhhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhH
Confidence            9999999999999999999998665432   2233456778999995

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.98  E-value=2.7e-32  Score=217.22  Aligned_cols=169  Identities=15%  Similarity=0.131  Sum_probs=140.8

Q ss_pred             hcCCcccceeccCcceeEEEEE------EeCCcEEEEEEeecCCCccHHHHHHHHHHHhccC---CCceeeecccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGR------LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR---HCHLVSALGHCFECY   93 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~------~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~---h~~i~~~~~~~~~~~   93 (206)
                      .++|...+.||+|+||.||+|.      ..+++.||+|++...   ....+..|.++++.+.   |+|++++++++..  
T Consensus        64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~--  138 (365)
T 3e7e_A           64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLF--  138 (365)
T ss_dssp             SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEEC--
T ss_pred             CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeeec--
Confidence            4678999999999999999994      336889999999743   3456777788777776   8999999998865  


Q ss_pred             ccCCCCceEEEEEeecCCCCHHHHHhcCC--CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC---
Q 028629           94 FDDSSVSRIFLIFEYVPNGTLRSWISEGH--AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---  168 (206)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~---  168 (206)
                           .+..++||||+++++|.+++....  ....+++..++.++.|++.||.|||+   .+|+||||||+|||++.   
T Consensus       139 -----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~---~~ivHrDiKp~NIll~~~~~  210 (365)
T 3e7e_A          139 -----QNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHD---CEIIHGDIKPDNFILGNGFL  210 (365)
T ss_dssp             -----SSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECGGGT
T ss_pred             -----CCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhh---CCeecCCCCHHHEEeccccc
Confidence                 567899999999999999997421  11569999999999999999999999   79999999999999998   


Q ss_pred             --------CCceeEccCCcccccc---ccccccccccCccccCCCCC
Q 028629          169 --------NLVAKISSYNLPLLAE---NAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       169 --------~~~~kl~df~~a~~~~---~~~~~~~~~~~~~y~aPE~~  204 (206)
                              ++.+||+|||+|+...   .........||.+|+|||..
T Consensus       211 ~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~  257 (365)
T 3e7e_A          211 EQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEML  257 (365)
T ss_dssp             CC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHH
T ss_pred             CccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHh
Confidence                    8999999999997543   33344556899999999964

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.98  E-value=3.3e-32  Score=224.20  Aligned_cols=168  Identities=17%  Similarity=0.300  Sum_probs=149.6

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|+..+.||+|+||.||+|... +++.||+|++....   ....+.+.+|+.++++++||||+++++++..       
T Consensus        25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-------   97 (484)
T 3nyv_A           25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFED-------   97 (484)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-------
T ss_pred             cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEe-------
Confidence            467999999999999999999986 79999999997543   3456778999999999999999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec---CCCceeEc
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD---QNLVAKIS  175 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~---~~~~~kl~  175 (206)
                      .+..++++|++.+++|.+.+...   ..+++..++.++.|++.||.|||+   .+|+||||||+||+++   .++.+||+
T Consensus        98 ~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~  171 (484)
T 3nyv_A           98 KGYFYLVGEVYTGGELFDEIISR---KRFSEVDAARIIRQVLSGITYMHK---NKIVHRDLKPENLLLESKSKDANIRII  171 (484)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHTC---SCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSTTCCEEEC
T ss_pred             CCEEEEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHEEEecCCCCCcEEEE
Confidence            67899999999999999988765   458999999999999999999999   7999999999999994   67899999


Q ss_pred             cCCccccccccccccccccCccccCCCC
Q 028629          176 SYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       176 df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      |||++.............+|+.|+|||.
T Consensus       172 Dfg~a~~~~~~~~~~~~~gt~~y~aPE~  199 (484)
T 3nyv_A          172 DFGLSTHFEASKKMKDKIGTAYYIAPEV  199 (484)
T ss_dssp             CTTHHHHBCCCCSHHHHTTGGGTCCHHH
T ss_pred             eeeeeEEcccccccccCCCCccccCcee
Confidence            9999998877666666789999999995

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.98  E-value=4.1e-32  Score=224.21  Aligned_cols=169  Identities=18%  Similarity=0.280  Sum_probs=144.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|+..+.||+|+||.||+|... ++..||+|++....  ......+.+|+.+++.++||||+++++++..       .
T Consensus        36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-------~  108 (494)
T 3lij_A           36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFED-------K  108 (494)
T ss_dssp             HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEEC-------S
T ss_pred             hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-------C
Confidence            457999999999999999999986 78999999997543  3345678899999999999999999999865       6


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC---CceeEcc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN---LVAKISS  176 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~---~~~kl~d  176 (206)
                      ...+++|||+++++|.+.+...   ..+++..++.++.|++.||.|||+   .+|+||||||+||+++..   +.+||+|
T Consensus       109 ~~~~lv~e~~~~g~L~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~D  182 (494)
T 3lij_A          109 RNYYLVMECYKGGELFDEIIHR---MKFNEVDAAVIIKQVLSGVTYLHK---HNIVHRDLKPENLLLESKEKDALIKIVD  182 (494)
T ss_dssp             SEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSTTCCEEECC
T ss_pred             CEEEEEEecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCChhhEEEeCCCCCCcEEEEE
Confidence            6899999999999999988765   458899999999999999999999   799999999999999864   5599999


Q ss_pred             CCccccccccccccccccCccccCCCCC
Q 028629          177 YNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ||++.............+|+.|+|||..
T Consensus       183 fG~a~~~~~~~~~~~~~gt~~y~aPE~l  210 (494)
T 3lij_A          183 FGLSAVFENQKKMKERLGTAYYIAPEVL  210 (494)
T ss_dssp             CTTCEECBTTBCBCCCCSCTTTCCHHHH
T ss_pred             CCCCeECCCCccccccCCCcCeeCHHHH
Confidence            9999988776666667899999999953

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.98  E-value=3.7e-32  Score=224.07  Aligned_cols=170  Identities=19%  Similarity=0.299  Sum_probs=146.8

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC--CCccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK--KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ..++|+..+.||+|+||.||+|... ++..||+|++...  .......+.+|++++++++||||+++++++..       
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-------   92 (486)
T 3mwu_A           20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILED-------   92 (486)
T ss_dssp             HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-------
T ss_pred             hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEc-------
Confidence            3567999999999999999999986 7999999998643  23456788999999999999999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec---CCCceeEc
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD---QNLVAKIS  175 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~---~~~~~kl~  175 (206)
                      ....++++||+.+++|.+.+...   ..+++..++.++.|++.||.|||+   .+|+||||||+||+++   .++.+||+
T Consensus        93 ~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~~kl~  166 (486)
T 3mwu_A           93 SSSFYIVGELYTGGELFDEIIKR---KRFSEHDAARIIKQVFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKII  166 (486)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEESSSSTTCCEEEC
T ss_pred             CCEEEEEEEcCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCchHHEEEecCCCCCCEEEE
Confidence            67899999999999999988765   458999999999999999999999   7999999999999996   45689999


Q ss_pred             cCCccccccccccccccccCccccCCCCC
Q 028629          176 SYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       176 df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |||++.............+|+.|+|||..
T Consensus       167 Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~  195 (486)
T 3mwu_A          167 DFGLSTCFQQNTKMKDRIGTAYYIAPEVL  195 (486)
T ss_dssp             SCSCTTTBCCC----CCTTGGGGCCGGGG
T ss_pred             ECCcCeECCCCCccCCCcCCCCCCCHHHh
Confidence            99999987766666667899999999964

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.98  E-value=7e-32  Score=223.33  Aligned_cols=170  Identities=18%  Similarity=0.244  Sum_probs=146.7

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC-------------ccHHHHHHHHHHHhccCCCceeeecc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-------------HSTRNFMHHIELISKLRHCHLVSALG   87 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~-------------~~~~~~~~e~~~l~~l~h~~i~~~~~   87 (206)
                      ..++|...+.||+|+||.||+|... ++..||+|++.....             ...+.+.+|+.++++++||||+++++
T Consensus        34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~  113 (504)
T 3q5i_A           34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD  113 (504)
T ss_dssp             GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            4578999999999999999999976 789999999975431             23567889999999999999999999


Q ss_pred             ccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec
Q 028629           88 HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD  167 (206)
Q Consensus        88 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~  167 (206)
                      ++..       ....++||||+++++|.+.+...   ..+++..++.++.|++.||.|||+   .+|+||||||+||+++
T Consensus       114 ~~~~-------~~~~~lv~e~~~gg~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~  180 (504)
T 3q5i_A          114 VFED-------KKYFYLVTEFYEGGELFEQIINR---HKFDECDAANIMKQILSGICYLHK---HNIVHRDIKPENILLE  180 (504)
T ss_dssp             EEEC-------SSEEEEEEECCTTCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEES
T ss_pred             EEEc-------CCEEEEEEecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCcHHHEEEe
Confidence            9865       67899999999999999988765   458999999999999999999999   7999999999999999


Q ss_pred             CCC---ceeEccCCccccccccccccccccCccccCCCCC
Q 028629          168 QNL---VAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       168 ~~~---~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      .++   .+||+|||++.............+|+.|+|||..
T Consensus       181 ~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~  220 (504)
T 3q5i_A          181 NKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVL  220 (504)
T ss_dssp             STTCCSSEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHH
T ss_pred             cCCCCccEEEEECCCCEEcCCCCccccccCCcCCCCHHHh
Confidence            765   6999999999988776666667899999999953

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.98  E-value=1.1e-31  Score=209.98  Aligned_cols=170  Identities=17%  Similarity=0.323  Sum_probs=131.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|+..+.||+|+||.||+|... ++..||+|.+.... ....+.+.+|+.++++++||||+++++++..       .+
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------~~   76 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHT-------EN   76 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECC-------TT
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEE-------CC
Confidence            568999999999999999999976 79999999997553 3344678899999999999999999998865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCC---CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629          101 RIFLIFEYVPNGTLRSWISEGH---AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      ..+++|||+++ +|.+++....   ....+++..+..++.|++.||.|||+   .+|+|+||||+||+++.++.+||+||
T Consensus        77 ~~~lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Df  152 (317)
T 2pmi_A           77 KLTLVFEFMDN-DLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHE---NKILHRDLKPQNLLINKRGQLKLGDF  152 (317)
T ss_dssp             EEEEEEECCCC-BHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCC
T ss_pred             eEEEEEEecCC-CHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCChHHeEEcCCCCEEECcC
Confidence            89999999985 9999886431   11358899999999999999999999   79999999999999999999999999


Q ss_pred             Ccccccccc-ccccccccCccccCCCC
Q 028629          178 NLPLLAENA-EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       178 ~~a~~~~~~-~~~~~~~~~~~y~aPE~  203 (206)
                      |++...... .......++..|+|||.
T Consensus       153 g~~~~~~~~~~~~~~~~~t~~y~aPE~  179 (317)
T 2pmi_A          153 GLARAFGIPVNTFSSEVVTLWYRAPDV  179 (317)
T ss_dssp             SSCEETTSCCCCCCCCCSCCTTCCHHH
T ss_pred             ccceecCCCcccCCCCcccccccCchH
Confidence            999876543 23344578899999995

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.98  E-value=5.3e-32  Score=217.22  Aligned_cols=172  Identities=12%  Similarity=0.202  Sum_probs=146.7

Q ss_pred             HhcCCcccceeccC--cceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           22 ATNNFDTSAFMGEG--SKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        22 ~~~~~~~~~~lg~g--~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      ..++|+..+.||+|  +||.||+|... +++.||+|++....  ....+.+.+|+.+++.++|+||+++++++..     
T Consensus        23 ~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-----   97 (389)
T 3gni_B           23 EGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIA-----   97 (389)
T ss_dssp             CGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----
T ss_pred             CCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEE-----
Confidence            36789999999999  99999999986 79999999997553  2334567889999999999999999999876     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                        .+..+++|||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.++|+|
T Consensus        98 --~~~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~NIll~~~~~~kl~d  171 (389)
T 3gni_B           98 --DNELWVVTSFMAYGSAKDLICTHFM-DGMNELAIAYILQGVLKALDYIHH---MGYVHRSVKASHILISVDGKVYLSG  171 (389)
T ss_dssp             --TTEEEEEEECCTTCBHHHHHHHTCT-TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECC
T ss_pred             --CCEEEEEEEccCCCCHHHHHhhhcc-cCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEcc
Confidence              6689999999999999999976533 458999999999999999999999   7999999999999999999999999


Q ss_pred             CCccccccccc--------cccccccCccccCCCCC
Q 028629          177 YNLPLLAENAE--------KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~~--------~~~~~~~~~~y~aPE~~  204 (206)
                      ||.+.......        ......++..|+|||..
T Consensus       172 fg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  207 (389)
T 3gni_B          172 LRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVL  207 (389)
T ss_dssp             GGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHH
T ss_pred             cccceeeccccccccccccccccccccccccCHHHH
Confidence            99986543221        22234778889999953

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.98  E-value=8.1e-33  Score=217.91  Aligned_cols=171  Identities=15%  Similarity=0.180  Sum_probs=135.8

Q ss_pred             HhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCC--------CccHHHHHHHHHHHhccC---------C-----
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--------SHSTRNFMHHIELISKLR---------H-----   79 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~--------~~~~~~~~~e~~~l~~l~---------h-----   79 (206)
                      ..++|+..+.||+|+||.||+|+. +|+.||+|++....        ....+.+.+|+.+++.++         |     
T Consensus        18 ~~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~   96 (336)
T 2vuw_A           18 PTEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIG   96 (336)
T ss_dssp             CHHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCC
T ss_pred             ccccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhh
Confidence            357899999999999999999998 68999999997653        223367888999998886         4     


Q ss_pred             ------------Cceeeecccccccccc------CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHH
Q 028629           80 ------------CHLVSALGHCFECYFD------DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVAR  141 (206)
Q Consensus        80 ------------~~i~~~~~~~~~~~~~------~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~  141 (206)
                                  |||+++++++.+..-.      ....+..++||||+++|++.+.+..    ..+++..++.++.|++.
T Consensus        97 l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~----~~~~~~~~~~i~~qi~~  172 (336)
T 2vuw_A           97 LNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT----KLSSLATAKSILHQLTA  172 (336)
T ss_dssp             EEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT----TCCCHHHHHHHHHHHHH
T ss_pred             hcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh----cCCCHHHHHHHHHHHHH
Confidence                        5555555544321000      0014679999999999876665543    34789999999999999


Q ss_pred             HHHHHh-cCCCCceeccCCccccEEecCCC--------------------ceeEccCCccccccccccccccccCccccC
Q 028629          142 GIQFLH-TGIVPGVFSNNLKITDILLDQNL--------------------VAKISSYNLPLLAENAEKVGHVTPYSGSIN  200 (206)
Q Consensus       142 ~l~~lH-~~~~~~i~h~dl~p~nil~~~~~--------------------~~kl~df~~a~~~~~~~~~~~~~~~~~y~a  200 (206)
                      ||.||| +   .+|+||||||+|||++.++                    .+||+|||+|+.....    ...||..|+|
T Consensus       173 aL~~lH~~---~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~----~~~gt~~y~a  245 (336)
T 2vuw_A          173 SLAVAEAS---LRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG----IVVFCDVSMD  245 (336)
T ss_dssp             HHHHHHHH---HCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT----EEECCCCTTC
T ss_pred             HHHHHHHh---CCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC----cEEEeecccC
Confidence            999999 8   7999999999999999876                    8999999999977643    3588999999


Q ss_pred             CCCC
Q 028629          201 PTNS  204 (206)
Q Consensus       201 PE~~  204 (206)
                      ||..
T Consensus       246 PE~~  249 (336)
T 2vuw_A          246 EDLF  249 (336)
T ss_dssp             SGGG
T ss_pred             hhhh
Confidence            9975

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.98  E-value=3.4e-32  Score=216.07  Aligned_cols=183  Identities=18%  Similarity=0.250  Sum_probs=152.9

Q ss_pred             CCCccceeCHHHHHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccC-----CC
Q 028629            7 GLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-----HC   80 (206)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-----h~   80 (206)
                      +......+++.+.....++|...+.||+|+||.||+|... +++.||+|++... .........|+.+++.+.     |+
T Consensus        18 ~~~~~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~   96 (360)
T 3llt_A           18 GDDEIVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNN   96 (360)
T ss_dssp             --CGGGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGG
T ss_pred             cCccceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCC
Confidence            3344556666666677899999999999999999999975 7899999999732 334456778999999986     99


Q ss_pred             ceeeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCc
Q 028629           81 HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLK  160 (206)
Q Consensus        81 ~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~  160 (206)
                      ||+++++++..       .+..+++||++ +++|.+++..... ..+++..++.++.|++.||.|||+   .+|+|||||
T Consensus        97 ~iv~~~~~~~~-------~~~~~lv~e~~-~~~L~~~~~~~~~-~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlk  164 (360)
T 3llt_A           97 NIVKYHGKFMY-------YDHMCLIFEPL-GPSLYEIITRNNY-NGFHIEDIKLYCIEILKALNYLRK---MSLTHTDLK  164 (360)
T ss_dssp             GBCCEEEEEEE-------TTEEEEEECCC-CCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCS
T ss_pred             CeecccceeeE-------CCeeEEEEcCC-CCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCC
Confidence            99999998876       56899999999 8899999987543 458999999999999999999999   799999999


Q ss_pred             cccEEecC-------------------------CCceeEccCCccccccccccccccccCccccCCCCC
Q 028629          161 ITDILLDQ-------------------------NLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       161 p~nil~~~-------------------------~~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |+|||+++                         ++.+||+|||++.......  ....+|..|+|||..
T Consensus       165 p~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~--~~~~gt~~y~aPE~~  231 (360)
T 3llt_A          165 PENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYH--GSIINTRQYRAPEVI  231 (360)
T ss_dssp             GGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCC--CSCCSCGGGCCHHHH
T ss_pred             cccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCCC--cCccCcccccCcHHH
Confidence            99999975                         7899999999998765433  346789999999953

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.98  E-value=4.7e-32  Score=222.18  Aligned_cols=172  Identities=16%  Similarity=0.198  Sum_probs=138.2

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC--CCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK--KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|+..+.||+|+||.||+|... +++.||+|++...  .....+.+.+|+.+++.++|+||+++++++...... ...
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~-~~~  139 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTL-EEF  139 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCST-TTC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCcc-ccC
Confidence            478999999999999999999976 7999999999754  233456788999999999999999999988642211 123


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...++||||+++ ++.+.+..     .+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+
T Consensus       140 ~~~~lv~E~~~~-~l~~~~~~-----~l~~~~~~~~~~qil~aL~~lH~---~~iiHrDlkp~NIll~~~~~~kl~DFG~  210 (464)
T 3ttj_A          140 QDVYLVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGL  210 (464)
T ss_dssp             CEEEEEEECCSE-EHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCCC
T ss_pred             CeEEEEEeCCCC-CHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChHhEEEeCCCCEEEEEEEe
Confidence            568999999976 56666643     38899999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ++............+|++|+|||..
T Consensus       211 a~~~~~~~~~~~~~gt~~y~aPE~~  235 (464)
T 3ttj_A          211 ARTAGTSFMMTPYVVTRYYRAPEVI  235 (464)
T ss_dssp             C-----CCCC----CCCTTCCHHHH
T ss_pred             eeecCCCcccCCCcccccccCHHHH
Confidence            9988766555667899999999963

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.98  E-value=2.9e-32  Score=216.25  Aligned_cols=183  Identities=20%  Similarity=0.343  Sum_probs=150.4

Q ss_pred             ceeCHHHHHHHhcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCCC-ccHHHHHHHHHHHhcc-CCCcee
Q 028629           12 RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKS-HSTRNFMHHIELISKL-RHCHLV   83 (206)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l-~h~~i~   83 (206)
                      ..+...++....++|...+.||+|+||.||+|.+.      +++.||+|.+..... ...+.+.+|++++.++ +||||+
T Consensus        10 ~~~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv   89 (359)
T 3vhe_A           10 LPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV   89 (359)
T ss_dssp             SCCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             CCCCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCccee
Confidence            34556677778899999999999999999999842      467899999975432 3345789999999999 789999


Q ss_pred             eeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCC----------------------------------------
Q 028629           84 SALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA----------------------------------------  123 (206)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~----------------------------------------  123 (206)
                      ++++++..      .....+++|||+++++|.+++.....                                        
T Consensus        90 ~~~~~~~~------~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (359)
T 3vhe_A           90 NLLGACTK------PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSA  163 (359)
T ss_dssp             CEEEEECS------TTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC----------------------------------
T ss_pred             eeeeeeec------CCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccc
Confidence            99998864      23458999999999999999976432                                        


Q ss_pred             -----------------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          124 -----------------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       124 -----------------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                                             ...+++..++.++.|++.||.|||+   .+|+|+||||+||++++++.++|+|||++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kl~Dfg~a  240 (359)
T 3vhe_A          164 SSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLA  240 (359)
T ss_dssp             --------------------CTTTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCGGG
T ss_pred             ccccccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEEcCCCcEEEEeccce
Confidence                                   1128899999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccc---cccccccCccccCCCC
Q 028629          181 LLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       181 ~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                      .......   ......++..|+|||.
T Consensus       241 ~~~~~~~~~~~~~~~~~t~~y~aPE~  266 (359)
T 3vhe_A          241 RDIYKDPDYVRKGDARLPLKWMAPET  266 (359)
T ss_dssp             SCTTSCTTCEEC--CEECGGGCCHHH
T ss_pred             eeecccccchhccccCCCceeEChhh
Confidence            8664332   3334567888999995

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.98  E-value=1.2e-31  Score=208.71  Aligned_cols=176  Identities=20%  Similarity=0.345  Sum_probs=143.6

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-----CccHHHHHHHHHHHhccC---CCceeeecccccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-----SHSTRNFMHHIELISKLR---HCHLVSALGHCFE   91 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-----~~~~~~~~~e~~~l~~l~---h~~i~~~~~~~~~   91 (206)
                      ...++|+..+.||+|+||.||+|... +++.||+|.+....     ......+.+|+.+++.+.   |+||+++++++..
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~   85 (308)
T 3g33_A            6 MATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCAT   85 (308)
T ss_dssp             ----CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEE
T ss_pred             ccccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeec
Confidence            34679999999999999999999975 79999999987432     122346667887777764   9999999998865


Q ss_pred             ccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc
Q 028629           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV  171 (206)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~  171 (206)
                      ...  ......++++|++.+ +|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||||+||++++++.
T Consensus        86 ~~~--~~~~~~~lv~e~~~~-~L~~~~~~~~~-~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~Nil~~~~~~  158 (308)
T 3g33_A           86 SRT--DREIKVTLVFEHVDQ-DLRTYLDKAPP-PGLPAETIKDLMRQFLRGLDFLHA---NCIVHRDLKPENILVTSGGT  158 (308)
T ss_dssp             CCS--SSEEEEEEEEECCCC-BHHHHHHTCCT-TCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCTTTEEECTTSC
T ss_pred             cCC--CCceeEEEEehhhhc-CHHHHHhhccC-CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEcCCCC
Confidence            211  112258999999975 99999987543 448999999999999999999999   79999999999999999999


Q ss_pred             eeEccCCccccccccccccccccCccccCCCC
Q 028629          172 AKISSYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       172 ~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      ++|+|||++.............+|..|+|||.
T Consensus       159 ~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~  190 (308)
T 3g33_A          159 VKLADFGLARIYSYQMALTPVVVTLWYRAPEV  190 (308)
T ss_dssp             EEECSCSCTTTSTTCCCSGGGGCCCSSCCHHH
T ss_pred             EEEeeCccccccCCCcccCCccccccccCchH
Confidence            99999999998776666666789999999995

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.98  E-value=1.2e-31  Score=213.57  Aligned_cols=171  Identities=20%  Similarity=0.378  Sum_probs=149.5

Q ss_pred             HHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc--------cHHHHHHHHHHHhcc-CCCceeeecccc
Q 028629           20 EEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH--------STRNFMHHIELISKL-RHCHLVSALGHC   89 (206)
Q Consensus        20 ~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~--------~~~~~~~e~~~l~~l-~h~~i~~~~~~~   89 (206)
                      ....++|...+.||+|++|.||+|... +|+.||+|++......        ..+.+.+|+.+++++ .|+||+++++++
T Consensus        90 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  169 (365)
T 2y7j_A           90 KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSY  169 (365)
T ss_dssp             HHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             hhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence            344578999999999999999999986 7999999999754321        134677899999999 799999999988


Q ss_pred             ccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC
Q 028629           90 FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN  169 (206)
Q Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~  169 (206)
                      ..       .+..+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++++
T Consensus       170 ~~-------~~~~~lv~e~~~g~~L~~~l~~~---~~l~~~~~~~i~~qi~~~L~~LH~---~gi~H~Dlkp~NIl~~~~  236 (365)
T 2y7j_A          170 ES-------SSFMFLVFDLMRKGELFDYLTEK---VALSEKETRSIMRSLLEAVSFLHA---NNIVHRDLKPENILLDDN  236 (365)
T ss_dssp             EB-------SSEEEEEECCCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTT
T ss_pred             ee-------CCEEEEEEEeCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEECCC
Confidence            65       56899999999999999999764   458999999999999999999999   799999999999999999


Q ss_pred             CceeEccCCccccccccccccccccCccccCCCC
Q 028629          170 LVAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       170 ~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      +.++|+|||++.............+++.|+|||.
T Consensus       237 ~~ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~  270 (365)
T 2y7j_A          237 MQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEI  270 (365)
T ss_dssp             CCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHH
T ss_pred             CCEEEEecCcccccCCCcccccCCCCCCccChhh
Confidence            9999999999988876666666789999999995

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.98  E-value=7.4e-32  Score=207.41  Aligned_cols=169  Identities=21%  Similarity=0.309  Sum_probs=147.6

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ..++|+..+.||+|+||.||+|... ++..||+|++....  ....+.+.+|+.++++++|+||+++++++..       
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------   76 (284)
T 3kk8_A            4 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQE-------   76 (284)
T ss_dssp             TTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEC-------
T ss_pred             hhhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEc-------
Confidence            3678999999999999999999976 78999999997553  2234578889999999999999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc---eeEc
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV---AKIS  175 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~---~kl~  175 (206)
                      .+..+++|||+++++|.+.+...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.   ++|+
T Consensus        77 ~~~~~~v~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~~~kl~  150 (284)
T 3kk8_A           77 ESFHYLVFDLVTGGELFEDIVAR---EFYSEADASHCIQQILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLA  150 (284)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESSSSTTCCEEEC
T ss_pred             CCEEEEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcCcCCCCHHHEEEecCCCCCcEEEe
Confidence            56789999999999999888765   458999999999999999999999   79999999999999986654   9999


Q ss_pred             cCCccccccccccccccccCccccCCCC
Q 028629          176 SYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       176 df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      |||++.............++..|+|||.
T Consensus       151 Dfg~~~~~~~~~~~~~~~~~~~y~aPE~  178 (284)
T 3kk8_A          151 DFGLAIEVNDSEAWHGFAGTPGYLSPEV  178 (284)
T ss_dssp             CCTTCEECCSSCBCCCSCSCGGGCCHHH
T ss_pred             eceeeEEcccCccccCCCCCcCCcCchh
Confidence            9999988776666566789999999995

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.98  E-value=9.8e-32  Score=207.20  Aligned_cols=172  Identities=16%  Similarity=0.223  Sum_probs=141.7

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|...+.||+|+||.||+|... ++..+|+|.+.... ....+.+.+|++++++++||||+++++++..       ..
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------~~   93 (285)
T 3is5_A           21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFED-------YH   93 (285)
T ss_dssp             HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-------SS
T ss_pred             hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheec-------CC
Confidence            467999999999999999999976 78999999997654 3456788999999999999999999998865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCC-CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec---CCCceeEcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGH-AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD---QNLVAKISS  176 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~---~~~~~kl~d  176 (206)
                      ..+++|||+++++|.+.+.... ....+++..++.++.|++.||.|||+   .+++|+||+|+||+++   .++.++|+|
T Consensus        94 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~dikp~NIl~~~~~~~~~~kl~D  170 (285)
T 3is5_A           94 NMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHS---QHVVHKDLKPENILFQDTSPHSPIKIID  170 (285)
T ss_dssp             EEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEESSSSTTCCEEECC
T ss_pred             eEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHh---CCEEECCCCHHHEEEecCCCCCCEEEEe
Confidence            7999999999999999885421 11458999999999999999999999   7999999999999994   457899999


Q ss_pred             CCccccccccccccccccCccccCCCCC
Q 028629          177 YNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ||++.............++..|+|||..
T Consensus       171 fg~a~~~~~~~~~~~~~~t~~y~aPE~~  198 (285)
T 3is5_A          171 FGLAELFKSDEHSTNAAGTALYMAPEVF  198 (285)
T ss_dssp             CCCCCC----------CTTGGGCCHHHH
T ss_pred             eecceecCCcccCcCcccccCcCChHHh
Confidence            9999887766666667899999999953

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.98  E-value=1.1e-31  Score=213.39  Aligned_cols=181  Identities=18%  Similarity=0.267  Sum_probs=142.7

Q ss_pred             CHHHHHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCc-----------cHHHHHHHHHHHhccCCCcee
Q 028629           15 SLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH-----------STRNFMHHIELISKLRHCHLV   83 (206)
Q Consensus        15 ~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~-----------~~~~~~~e~~~l~~l~h~~i~   83 (206)
                      .+.++....++|...+.||+|+||.||+|...++..||+|.+......           ..+.+.+|+.++++++|+||+
T Consensus        13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv   92 (362)
T 3pg1_A           13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL   92 (362)
T ss_dssp             HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence            356777888999999999999999999999878999999998643221           126789999999999999999


Q ss_pred             eeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCcccc
Q 028629           84 SALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITD  163 (206)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~n  163 (206)
                      ++++++...  ........+++|||++ ++|.+.+....  ..+++..++.++.|++.||.|||+   .+++|+||||+|
T Consensus        93 ~~~~~~~~~--~~~~~~~~~lv~e~~~-~~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~N  164 (362)
T 3pg1_A           93 GLRDIFVHF--EEPAMHKLYLVTELMR-TDLAQVIHDQR--IVISPQHIQYFMYHILLGLHVLHE---AGVVHRDLHPGN  164 (362)
T ss_dssp             CCSEEEEEC--CTTTCCEEEEEEECCS-EEHHHHHHCTT--SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGG
T ss_pred             ceeeeEEec--cCCCcceEEEEEccCC-CCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHH---CcCEecCCChHH
Confidence            999988542  1123457899999997 58888887543  468999999999999999999999   799999999999


Q ss_pred             EEecCCCceeEccCCccccccccccccccccCccccCCCC
Q 028629          164 ILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       164 il~~~~~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      |++++++.++|+|||++.............++..|+|||.
T Consensus       165 Il~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~  204 (362)
T 3pg1_A          165 ILLADNNDITICDFNLAREDTADANKTHYVTHRWYRAPEL  204 (362)
T ss_dssp             EEECTTCCEEECCTTC---------------CGGGCCHHH
T ss_pred             EEEcCCCCEEEEecCcccccccccccceecccceecCcHH
Confidence            9999999999999999987766666666788999999995

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.98  E-value=1.5e-32  Score=214.16  Aligned_cols=172  Identities=15%  Similarity=0.259  Sum_probs=138.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc---cHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH---STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|+..+.||+|+||.||+|... +++.||+|++......   ....+.+|+.++++++||||+++++++....   ..
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~---~~   87 (311)
T 3ork_A           11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAET---PA   87 (311)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEE---TT
T ss_pred             cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccC---CC
Confidence            678999999999999999999975 7899999999765322   2356889999999999999999999875411   11


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ....+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.+||+|||
T Consensus        88 ~~~~~lv~e~~~g~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg  161 (311)
T 3ork_A           88 GPLPYIVMEYVDGVTLRDIVHTE---GPMTPKRAIEVIADACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFG  161 (311)
T ss_dssp             EEEEEEEEECCCEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEETTSCEEECCCS
T ss_pred             CcccEEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCCCcCCCCHHHEEEcCCCCEEEeecc
Confidence            23469999999999999999765   458999999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccc----cccccccCccccCCCC
Q 028629          179 LPLLAENAE----KVGHVTPYSGSINPTN  203 (206)
Q Consensus       179 ~a~~~~~~~----~~~~~~~~~~y~aPE~  203 (206)
                      ++.......    ......++..|+|||.
T Consensus       162 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~  190 (311)
T 3ork_A          162 IARAIADSGNSVTQTAAVIGTAQYLSPEQ  190 (311)
T ss_dssp             CC------------------CCTTCCHHH
T ss_pred             CcccccccccccccccccCcCcccCCHHH
Confidence            998765432    2233568999999995

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.98  E-value=8.6e-32  Score=209.65  Aligned_cols=168  Identities=18%  Similarity=0.296  Sum_probs=139.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC--ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|+..+.||+|+||.||+|... +++.||+|.+.....  ...+.+.+|+.++++++|+||+++++++..       .
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-------~   74 (311)
T 4agu_A            2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRR-------K   74 (311)
T ss_dssp             -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-------T
T ss_pred             cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeec-------C
Confidence            468999999999999999999986 699999999865432  224567889999999999999999999865       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +..+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||+
T Consensus        75 ~~~~lv~e~~~~~~l~~~~~~~---~~~~~~~~~~i~~~l~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg~  148 (311)
T 4agu_A           75 RRLHLVFEYCDHTVLHELDRYQ---RGVPEHLVKSITWQTLQAVNFCHK---HNCIHRDVKPENILITKHSVIKLCDFGF  148 (311)
T ss_dssp             TEEEEEEECCSEEHHHHHHHTS---SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred             CeEEEEEEeCCCchHHHHHhhh---cCCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCChhhEEEcCCCCEEEeeCCC
Confidence            6899999999999999888765   458999999999999999999999   7999999999999999999999999999


Q ss_pred             ccccccc-ccccccccCccccCCCC
Q 028629          180 PLLAENA-EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       180 a~~~~~~-~~~~~~~~~~~y~aPE~  203 (206)
                      +...... .......++..|+|||.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~y~aPE~  173 (311)
T 4agu_A          149 ARLLTGPSDYYDDEVATRWYRSPEL  173 (311)
T ss_dssp             CEECC------------GGGCCHHH
T ss_pred             chhccCcccccCCCcCCccccChHH
Confidence            9876543 23344678899999995

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.98  E-value=4.7e-32  Score=209.02  Aligned_cols=166  Identities=19%  Similarity=0.328  Sum_probs=144.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CC-------cEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NG-------TFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~-------~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   94 (206)
                      .++|...+.||+|+||.||+|... ++       ..||+|.+........+.+.+|+.++++++|+||+++++++..   
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---   83 (289)
T 4fvq_A            7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVC---   83 (289)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECC---
T ss_pred             hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEe---
Confidence            467999999999999999999965 34       4799999976666667889999999999999999999999865   


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc---
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV---  171 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~---  171 (206)
                          .+..+++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.   
T Consensus        84 ----~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~~~  154 (289)
T 4fvq_A           84 ----GDENILVQEFVKFGSLDTYLKKNK--NCINILWKLEVAKQLAAAMHFLEE---NTLIHGNVCAKNILLIREEDRKT  154 (289)
T ss_dssp             ----TTCCEEEEECCTTCBHHHHHHHTG--GGCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEEECCBGGG
T ss_pred             ----CCCCEEEEECCCCCCHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHhh---CCeECCCcCcceEEEecCCcccc
Confidence                557899999999999999998753  348999999999999999999999   79999999999999998876   


Q ss_pred             -----eeEccCCccccccccccccccccCccccCCCC
Q 028629          172 -----AKISSYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       172 -----~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                           ++|+|||++......   ....++..|+|||.
T Consensus       155 ~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~  188 (289)
T 4fvq_A          155 GNPPFIKLSDPGISITVLPK---DILQERIPWVPPEC  188 (289)
T ss_dssp             TBCCEEEECCCCSCTTTSCH---HHHHHTTTTSCHHH
T ss_pred             cccceeeeccCcccccccCc---cccCCcCcccCHHH
Confidence                 999999999766543   23467888999995

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.98  E-value=4.6e-32  Score=216.67  Aligned_cols=168  Identities=24%  Similarity=0.428  Sum_probs=132.4

Q ss_pred             cCCcccceeccCcceeEEEEEEe----CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~----~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ++|...+.||+|+||.||+|...    ++..||+|.+.... ....+.+.+|+.++++++|+||+++++++..       
T Consensus        45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-------  117 (373)
T 2qol_A           45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTK-------  117 (373)
T ss_dssp             GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-------
T ss_pred             hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEee-------
Confidence            57999999999999999999864    46789999997543 2344678999999999999999999999865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+..+++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.+||+|||
T Consensus       118 ~~~~~lv~e~~~~~sL~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg  192 (373)
T 2qol_A          118 SKPVMIVTEYMENGSLDSFLRKHD--AQFTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFG  192 (373)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHTTT--TCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC-
T ss_pred             CCceEEEEeCCCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCcceEEEcCCCCEEECcCc
Confidence            567899999999999999997653  458999999999999999999999   799999999999999999999999999


Q ss_pred             cccccccccc----ccccccCccccCCCC
Q 028629          179 LPLLAENAEK----VGHVTPYSGSINPTN  203 (206)
Q Consensus       179 ~a~~~~~~~~----~~~~~~~~~y~aPE~  203 (206)
                      +++.......    .....++..|+|||.
T Consensus       193 ~a~~~~~~~~~~~~~~~~~~~~~y~aPE~  221 (373)
T 2qol_A          193 LGRVLEDDPEAAYTTRGGKIPIRWTSPEA  221 (373)
T ss_dssp             ---------------------CTTSCHHH
T ss_pred             cccccccCCccceeccCCCcCCCccChhh
Confidence            9987654321    111234567999995

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.98  E-value=1.2e-31  Score=206.11  Aligned_cols=168  Identities=18%  Similarity=0.305  Sum_probs=142.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC------ccHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS------HSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      .++|+..+.||+|+||.||+|... +++.||+|.+.....      ...+.+.+|+.++++++|+||+++++++..    
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~----   79 (283)
T 3bhy_A            4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFEN----   79 (283)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC----
T ss_pred             hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecC----
Confidence            457999999999999999999986 799999999975431      235778999999999999999999998865    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC----c
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL----V  171 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~----~  171 (206)
                         ....+++||++++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++    .
T Consensus        80 ---~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~~~  150 (283)
T 3bhy_A           80 ---KTDVVLILELVSGGELFDFLAEK---ESLTEDEATQFLKQILDGVHYLHS---KRIAHFDLKPENIMLLDKNVPNPR  150 (283)
T ss_dssp             ---SSEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSSSSCC
T ss_pred             ---CCeEEEEEeecCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCChHHEEEecCCCCCCc
Confidence               56799999999999999999764   458999999999999999999999   7999999999999999776    8


Q ss_pred             eeEccCCccccccccccccccccCccccCCCC
Q 028629          172 AKISSYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       172 ~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      ++|+|||++.............++..|+|||.
T Consensus       151 ~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~  182 (283)
T 3bhy_A          151 IKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEI  182 (283)
T ss_dssp             EEECCCTTCEECC--------CCCGGGCCHHH
T ss_pred             eEEEecccceeccCCCcccccCCCcCccCcce
Confidence            99999999988766555555678999999995

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.97  E-value=1.1e-31  Score=208.68  Aligned_cols=170  Identities=18%  Similarity=0.347  Sum_probs=144.7

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ...++|...+.||+|+||.||+|... +++.||+|.+........+.+.+|+.++++++|+||+++++++..       .
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~   78 (304)
T 2jam_A            6 NIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYES-------T   78 (304)
T ss_dssp             CHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEEC-------S
T ss_pred             chhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhccc-------C
Confidence            34678999999999999999999976 799999999986554455678899999999999999999998865       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEe---cCCCceeEcc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL---DQNLVAKISS  176 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~---~~~~~~kl~d  176 (206)
                      +..+++||++++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||++   ++++.++|+|
T Consensus        79 ~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dikp~NIl~~~~~~~~~~kl~D  152 (304)
T 2jam_A           79 THYYLVMQLVSGGELFDRILER---GVYTEKDASLVIQQVLSAVKYLHE---NGIVHRDLKPENLLYLTPEENSKIMITD  152 (304)
T ss_dssp             SEEEEEECCCCSCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCSCCGGGCEESSSSTTCCEEBCS
T ss_pred             CEEEEEEEcCCCccHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHHHEEEecCCCCCCEEEcc
Confidence            6899999999999999988764   358899999999999999999999   799999999999999   6788999999


Q ss_pred             CCccccccccccccccccCccccCCCCC
Q 028629          177 YNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ||++....... .....++..|+|||..
T Consensus       153 fg~~~~~~~~~-~~~~~~~~~y~aPE~~  179 (304)
T 2jam_A          153 FGLSKMEQNGI-MSTACGTPGYVAPEVL  179 (304)
T ss_dssp             CSTTCCCCCBT-THHHHSCCCBCCTTTB
T ss_pred             CCcceecCCCc-cccccCCCCccChHHh
Confidence            99998665432 3345789999999975

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.97  E-value=2.2e-32  Score=210.70  Aligned_cols=173  Identities=18%  Similarity=0.356  Sum_probs=148.9

Q ss_pred             HHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           19 LEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        19 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      +....++|+..+.||+|+||.||+|... ++..||+|.+... ....+.+.+|+.++++++|+||+++++++..      
T Consensus         8 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~------   80 (288)
T 3kfa_A            8 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR------   80 (288)
T ss_dssp             TBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC-STHHHHHHHHHHHHHHCCCTTBCCEEEEECS------
T ss_pred             ccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEcc------
Confidence            3345788999999999999999999987 6889999999743 3456778899999999999999999998865      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       .+..+++||++++++|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+||
T Consensus        81 -~~~~~~v~e~~~~~~L~~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~~l~Df  155 (288)
T 3kfa_A           81 -EPPFYIITEFMTYGNLLDYLRECNR-QEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADF  155 (288)
T ss_dssp             -SSSEEEEEECCTTEEHHHHHHHCCT-TTSCHHHHHHHHHHHHHHHHHHHH---HTCCCSCCSGGGEEECGGGCEEECCC
T ss_pred             -CCCEEEEEEcCCCCcHHHHHHhccc-CCccHhHHHHHHHHHHHHHHHHHH---CCccCCCCCcceEEEcCCCCEEEccC
Confidence             5678999999999999999987543 568999999999999999999999   79999999999999999999999999


Q ss_pred             Cccccccccc--cccccccCccccCCCC
Q 028629          178 NLPLLAENAE--KVGHVTPYSGSINPTN  203 (206)
Q Consensus       178 ~~a~~~~~~~--~~~~~~~~~~y~aPE~  203 (206)
                      |++.......  ......++..|+|||.
T Consensus       156 g~~~~~~~~~~~~~~~~~~~~~y~aPE~  183 (288)
T 3kfa_A          156 GLSRLMTGDTYTAHAGAKFPIKWTAPES  183 (288)
T ss_dssp             CGGGTSCSSSSEEETTEEECGGGCCHHH
T ss_pred             ccceeccCCccccccCCccccCcCChhh
Confidence            9998765443  2233456678999995

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.97  E-value=3.6e-32  Score=213.73  Aligned_cols=173  Identities=18%  Similarity=0.323  Sum_probs=136.4

Q ss_pred             HHHHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC--ccHHHHHHHHHHHhccCCCceeeecccccccc
Q 028629           17 EELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECY   93 (206)
Q Consensus        17 ~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   93 (206)
                      .......++|+..+.||+|+||.||+|... +++.||+|++.....  ...+.+.+|+.++++++|+||+++++++..  
T Consensus        27 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~--  104 (329)
T 3gbz_A           27 APSATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHH--  104 (329)
T ss_dssp             -----CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEE--
T ss_pred             CCcccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEec--
Confidence            344556789999999999999999999976 799999999975432  224567789999999999999999999876  


Q ss_pred             ccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec-----C
Q 028629           94 FDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD-----Q  168 (206)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~-----~  168 (206)
                           ....+++|||+++ +|.+++...   ..+++..++.++.|++.||.|||+   .+|+|+||||+||+++     +
T Consensus       105 -----~~~~~lv~e~~~~-~L~~~~~~~---~~~~~~~~~~i~~ql~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~  172 (329)
T 3gbz_A          105 -----NHRLHLIFEYAEN-DLKKYMDKN---PDVSMRVIKSFLYQLINGVNFCHS---RRCLHRDLKPQNLLLSVSDASE  172 (329)
T ss_dssp             -----TTEEEEEEECCSE-EHHHHHHHC---TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEC-----
T ss_pred             -----CCEEEEEEecCCC-CHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCEECCCCCHHHEEEecCCCCc
Confidence                 6689999999975 999999876   458999999999999999999999   7999999999999994     4


Q ss_pred             CCceeEccCCcccccccc-ccccccccCccccCCCC
Q 028629          169 NLVAKISSYNLPLLAENA-EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       169 ~~~~kl~df~~a~~~~~~-~~~~~~~~~~~y~aPE~  203 (206)
                      ++.+||+|||++...... .......++..|+|||.
T Consensus       173 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~  208 (329)
T 3gbz_A          173 TPVLKIGDFGLARAFGIPIRQFTHEIITLWYRPPEI  208 (329)
T ss_dssp             CCEEEECCTTHHHHHC-----------CCTTCCHHH
T ss_pred             cceEEECcCCCccccCCcccccCCCcCCccccCHHH
Confidence            556999999999876543 33344577899999995

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.97  E-value=7.5e-32  Score=222.68  Aligned_cols=172  Identities=19%  Similarity=0.363  Sum_probs=146.8

Q ss_pred             HHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           20 EEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        20 ~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .....+|...+.||+|+||.||+|.+. ++..||+|.+... ....+.+.+|+.++++++|+||+++++++..       
T Consensus       216 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~-------  287 (495)
T 1opk_A          216 EMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR-------  287 (495)
T ss_dssp             BCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSS-SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-------
T ss_pred             ccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCc-ccchHHHHHHHHHHHhcCCCCEeeEEEEEec-------
Confidence            344567889999999999999999987 5889999999754 3456789999999999999999999999865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ....+++|||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+|+||||||+|||+++++.+||+|||
T Consensus       288 ~~~~~lv~E~~~~g~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DFG  363 (495)
T 1opk_A          288 EPPFYIITEFMTYGNLLDYLRECNR-QEVSAVVLLYMATQISSAMEYLEK---KNFIHRNLAARNCLVGENHLVKVADFG  363 (495)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHSCT-TTSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECGGGCEEECCTT
T ss_pred             CCcEEEEEEccCCCCHHHHHHhcCc-CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChhhEEECCCCcEEEeecc
Confidence            5678999999999999999986433 468999999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccc--cccccccCccccCCCC
Q 028629          179 LPLLAENAE--KVGHVTPYSGSINPTN  203 (206)
Q Consensus       179 ~a~~~~~~~--~~~~~~~~~~y~aPE~  203 (206)
                      +++......  ......++..|+|||.
T Consensus       364 ~a~~~~~~~~~~~~~~~~~~~y~aPE~  390 (495)
T 1opk_A          364 LSRLMTGDTYTAHAGAKFPIKWTAPES  390 (495)
T ss_dssp             CEECCTTCCEECCTTCCCCGGGCCHHH
T ss_pred             cceeccCCceeecCCCcCCcceeCHhH
Confidence            998765432  1222344568999995

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=8.7e-32  Score=215.95  Aligned_cols=170  Identities=17%  Similarity=0.311  Sum_probs=134.6

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC--CCccHHHHHHHHHHHhccC-CCceeeeccccccccccC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK--KSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDD   96 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~   96 (206)
                      ...++|+..+.||+|+||.||+|... +++.||+|.+...  .......+.+|+.+++.+. |+||+++++++..     
T Consensus         6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~-----   80 (388)
T 3oz6_A            6 HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRA-----   80 (388)
T ss_dssp             HHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-----
T ss_pred             cccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEec-----
Confidence            34688999999999999999999976 7999999998643  2334567788999999997 9999999998864     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                      .....++++|||++ ++|.+++...    .+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|
T Consensus        81 ~~~~~~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~D  152 (388)
T 3oz6_A           81 DNDRDVYLVFDYME-TDLHAVIRAN----ILEPVHKQYVVYQLIKVIKYLHS---GGLLHRDMKPSNILLNAECHVKVAD  152 (388)
T ss_dssp             TTSSCEEEEEECCS-EEHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECC
T ss_pred             CCCCEEEEEecccC-cCHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCHHHeEEcCCCCEEecC
Confidence            22457899999997 4899988763    58899999999999999999999   7999999999999999999999999


Q ss_pred             CCcccccccc----------------------ccccccccCccccCCCC
Q 028629          177 YNLPLLAENA----------------------EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       177 f~~a~~~~~~----------------------~~~~~~~~~~~y~aPE~  203 (206)
                      ||+++.....                      .......+|++|+|||.
T Consensus       153 FG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~  201 (388)
T 3oz6_A          153 FGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEI  201 (388)
T ss_dssp             CTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHH
T ss_pred             CcccccccccccccccccccccccccccccccccccCCcccCCcCCHHH
Confidence            9999865331                      12233578999999995

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.97  E-value=4.1e-32  Score=222.09  Aligned_cols=174  Identities=20%  Similarity=0.340  Sum_probs=146.9

Q ss_pred             HHHHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           17 EELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        17 ~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      .++....++|...+.||+|+||.||+|...++..||+|.++.. ....+.+.+|+.++++++|+||+++++++.      
T Consensus       181 ~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~------  253 (454)
T 1qcf_A          181 DAWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLVKLHAVVT------  253 (454)
T ss_dssp             TCSBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTT-SBCHHHHHHHHHHHTTCCCTTBCCEEEEEC------
T ss_pred             cceeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCC-CccHHHHHHHHHHHhhCCCCCEeeEEEEEe------
Confidence            4455566789999999999999999999887889999999754 345678999999999999999999999874      


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                        .+..+++|||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+++||||||+|||+++++.+||+|
T Consensus       254 --~~~~~lv~e~~~~g~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~D  327 (454)
T 1qcf_A          254 --KEPIYIITEFMAKGSLLDFLKSDEG-SKQPLPKLIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSASLVCKIAD  327 (454)
T ss_dssp             --SSSCEEEECCCTTCBHHHHHHSHHH-HTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCSGGGEEECTTCCEEECS
T ss_pred             --CCccEEEEeecCCCcHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCHHHEEECCCCcEEEee
Confidence              3458999999999999999975321 357889999999999999999999   7999999999999999999999999


Q ss_pred             CCccccccccc--cccccccCccccCCCC
Q 028629          177 YNLPLLAENAE--KVGHVTPYSGSINPTN  203 (206)
Q Consensus       177 f~~a~~~~~~~--~~~~~~~~~~y~aPE~  203 (206)
                      ||+++......  ......++..|+|||.
T Consensus       328 FG~a~~~~~~~~~~~~~~~~~~~y~aPE~  356 (454)
T 1qcf_A          328 FGLARVIEDNEYTAREGAKFPIKWTAPEA  356 (454)
T ss_dssp             TTGGGGBCCHHHHTTCSSSSCGGGSCHHH
T ss_pred             CCCceEcCCCceeccCCCcccccccCHHH
Confidence            99998765432  1222345668999995

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.97  E-value=1.8e-31  Score=204.78  Aligned_cols=171  Identities=18%  Similarity=0.371  Sum_probs=134.2

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ..++|...+.||+|+||.||+|... +++.||+|.+....   ....+.+.+|+.++++++|+||+++++++..      
T Consensus         9 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~------   82 (278)
T 3cok_A            9 KIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFED------   82 (278)
T ss_dssp             SGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEEC------
T ss_pred             ccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEcc------
Confidence            3568999999999999999999975 79999999996432   2334678899999999999999999998865      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       .+..++++||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+||
T Consensus        83 -~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nili~~~~~~kl~df  156 (278)
T 3cok_A           83 -SNYVYLVLEMCHNGEMNRYLKNRV--KPFSENEARHFMHQIITGMLYLHS---HGILHRDLTLSNLLLTRNMNIKIADF  156 (278)
T ss_dssp             -SSEEEEEEECCTTEEHHHHHHTCS--SCCCHHHHHHHHHHHHHHHHHHHH---TTEECSSCCGGGEEECTTCCEEECCC
T ss_pred             -CCeEEEEEecCCCCcHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHEEEcCCCCEEEEee
Confidence             568999999999999999998643  458999999999999999999999   79999999999999999999999999


Q ss_pred             Ccccccccc-ccccccccCccccCCCCC
Q 028629          178 NLPLLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      |++...... .......++..|+|||..
T Consensus       157 g~~~~~~~~~~~~~~~~~~~~y~aPE~~  184 (278)
T 3cok_A          157 GLATQLKMPHEKHYTLCGTPNYISPEIA  184 (278)
T ss_dssp             TTCEECC---------------------
T ss_pred             cceeeccCCCCcceeccCCCCcCCcchh
Confidence            999876533 233346788999999964

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.97  E-value=8.6e-32  Score=229.38  Aligned_cols=170  Identities=19%  Similarity=0.286  Sum_probs=146.8

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC---CCccHHHHHHHHHHHhcc-CCCceeeeccccccccccC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~   96 (206)
                      ..++|...+.||+|+||.||+|... +++.||+|++...   .....+.+..|..++..+ +|++|++++.++.+     
T Consensus       339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~-----  413 (674)
T 3pfq_A          339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQT-----  413 (674)
T ss_dssp             -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBC-----
T ss_pred             cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEe-----
Confidence            3468999999999999999999976 7889999999753   234456778899999988 69999999988865     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                        .+.+++||||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+||+|
T Consensus       414 --~~~~~lV~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~gIiHrDLKp~NILl~~~g~ikL~D  485 (674)
T 3pfq_A          414 --MDRLYFVMEYVNGGDLMYHIQQV---GRFKEPHAVFYAAEIAIGLFFLQS---KGIIYRDLKLDNVMLDSEGHIKIAD  485 (674)
T ss_dssp             --SSEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TSEECCCCCSTTEEECSSSCEEECC
T ss_pred             --CCEEEEEEeCcCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeEeccCChhhEEEcCCCcEEEee
Confidence              67899999999999999999875   358999999999999999999999   7999999999999999999999999


Q ss_pred             CCcccccc-ccccccccccCccccCCCCC
Q 028629          177 YNLPLLAE-NAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~-~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ||+++... .........||++|+|||..
T Consensus       486 FGla~~~~~~~~~~~~~~GT~~Y~APE~l  514 (674)
T 3pfq_A          486 FGMCKENIWDGVTTKTFCGTPDYIAPEII  514 (674)
T ss_dssp             CTTCEECCCTTCCBCCCCSCSSSCCHHHH
T ss_pred             cceeeccccCCcccccccCCCcccCHhhh
Confidence            99998643 33445567899999999964

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.97  E-value=2.1e-31  Score=207.94  Aligned_cols=168  Identities=17%  Similarity=0.277  Sum_probs=140.0

Q ss_pred             hcCCccc-ceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTS-AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~-~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|.+. +.||+|+||.||+|... +++.||+|++........+.+.+|++++.++ .|+||+++++++..       .
T Consensus        11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~-------~   83 (316)
T 2ac3_A           11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEE-------E   83 (316)
T ss_dssp             TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-------T
T ss_pred             ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEee-------C
Confidence            4678874 78999999999999965 7999999999866666677899999999985 79999999999865       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc---eeEcc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV---AKISS  176 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~---~kl~d  176 (206)
                      +..+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.   +||+|
T Consensus        84 ~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~Nil~~~~~~~~~~kl~D  157 (316)
T 2ac3_A           84 DRFYLVFEKMRGGSILSHIHKR---RHFNELEASVVVQDVASALDFLHN---KGIAHRDLKPENILCEHPNQVSPVKICD  157 (316)
T ss_dssp             TEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEESCSSSSCSEEECC
T ss_pred             CEEEEEEEcCCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHh---CCceeCCCCHHHEEEccCCCcCceEEEE
Confidence            6899999999999999999765   458899999999999999999999   79999999999999997765   99999


Q ss_pred             CCccccccccc--------cccccccCccccCCCC
Q 028629          177 YNLPLLAENAE--------KVGHVTPYSGSINPTN  203 (206)
Q Consensus       177 f~~a~~~~~~~--------~~~~~~~~~~y~aPE~  203 (206)
                      ||++.......        ......++..|+|||.
T Consensus       158 fg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~  192 (316)
T 2ac3_A          158 FDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEV  192 (316)
T ss_dssp             TTCCC-------------------CCSGGGCCHHH
T ss_pred             ccCccccccCCccccccccccccccCCcCccChHH
Confidence            99997654221        1223468999999995

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.97  E-value=1.7e-31  Score=206.76  Aligned_cols=170  Identities=17%  Similarity=0.297  Sum_probs=148.7

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC---------ccHHHHHHHHHHHhccC-CCceeeecccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---------HSTRNFMHHIELISKLR-HCHLVSALGHC   89 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~---------~~~~~~~~e~~~l~~l~-h~~i~~~~~~~   89 (206)
                      ...++|...+.||+|++|.||+|... +++.||+|.+.....         ...+.+.+|+.+++++. |+||+++++++
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~   93 (298)
T 1phk_A           14 GFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY   93 (298)
T ss_dssp             -CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             chhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeee
Confidence            34689999999999999999999986 789999999975431         12346788999999995 99999999988


Q ss_pred             ccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC
Q 028629           90 FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN  169 (206)
Q Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~  169 (206)
                      ..       ....+++||++++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++++
T Consensus        94 ~~-------~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~  160 (298)
T 1phk_A           94 ET-------NTFFFLVFDLMKKGELFDYLTEK---VTLSEKETRKIMRALLEVICALHK---LNIVHRDLKPENILLDDD  160 (298)
T ss_dssp             EC-------SSEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTT
T ss_pred             cc-------CCeEEEEEeccCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEEEcCC
Confidence            65       56899999999999999999765   458999999999999999999999   799999999999999999


Q ss_pred             CceeEccCCccccccccccccccccCccccCCCC
Q 028629          170 LVAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       170 ~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      +.++|+|||++.............++..|+|||.
T Consensus       161 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~  194 (298)
T 1phk_A          161 MNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEI  194 (298)
T ss_dssp             CCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHH
T ss_pred             CcEEEecccchhhcCCCcccccccCCccccCHHH
Confidence            9999999999988776665666788999999995

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.97  E-value=3.1e-32  Score=217.88  Aligned_cols=171  Identities=17%  Similarity=0.349  Sum_probs=143.5

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ...++|...+.||+|+||.||+|... ++..||+|.+..... ...+.+.+|++++++++||||+++++++..       
T Consensus       111 ~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-------  183 (377)
T 3cbl_A          111 LNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQ-------  183 (377)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECS-------
T ss_pred             EchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEec-------
Confidence            34567889999999999999999987 799999999874432 223467889999999999999999999865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+..+++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++||||+|+|||+++++.+||+|||
T Consensus       184 ~~~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nil~~~~~~~kl~DfG  258 (377)
T 3cbl_A          184 KQPIYIVMELVQGGDFLTFLRTEG--ARLRVKTLLQMVGDAAAGMEYLES---KCCIHRDLAARNCLVTEKNVLKISDFG  258 (377)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHHG--GGCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCGG
T ss_pred             CCCcEEEEEcCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHH---CCcCCcccCHHHEEEcCCCcEEECcCC
Confidence            567899999999999999987542  458899999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccccc---cccccCccccCCCC
Q 028629          179 LPLLAENAEKV---GHVTPYSGSINPTN  203 (206)
Q Consensus       179 ~a~~~~~~~~~---~~~~~~~~y~aPE~  203 (206)
                      +++........   ....++..|+|||.
T Consensus       259 ~s~~~~~~~~~~~~~~~~~~~~y~aPE~  286 (377)
T 3cbl_A          259 MSREEADGVYAASGGLRQVPVKWTAPEA  286 (377)
T ss_dssp             GCEECTTSEEECCSSCCEEEGGGSCHHH
T ss_pred             CceecCCCceeecCCCCCCCcCcCCHhH
Confidence            99865443211   12234567999995

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.97  E-value=1.4e-31  Score=210.14  Aligned_cols=160  Identities=17%  Similarity=0.193  Sum_probs=124.6

Q ss_pred             cceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccC-CCceeeeccccccccccCCCCceEEEEE
Q 028629           29 SAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVSRIFLIF  106 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~~~~lv~  106 (206)
                      .+.||+|+||.||+|... +++.||+|.+...   ....+.+|+..++.+. ||||+++++++.+       ....+++|
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~-------~~~~~lv~   85 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHD-------QLHTFLVM   85 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-------SSEEEEEE
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEc-------CCEEEEEE
Confidence            478999999999999986 7999999999743   3456778999999997 9999999999865       66899999


Q ss_pred             eecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC---ceeEccCCccccc
Q 028629          107 EYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL---VAKISSYNLPLLA  183 (206)
Q Consensus       107 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~---~~kl~df~~a~~~  183 (206)
                      ||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+|+|+||||+||+++.++   .++|+|||++...
T Consensus        86 e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~  159 (325)
T 3kn6_A           86 ELLNGGELFERIKKK---KHFSETEASYIMRKLVSAVSHMHD---VGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLK  159 (325)
T ss_dssp             CCCCSCBHHHHHHHC---SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEEEC----CEEEECCCTTCEEC
T ss_pred             EccCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCCeecCCCHHHEEEecCCCcccEEEeccccceec
Confidence            999999999999876   468999999999999999999999   7999999999999998665   8999999999866


Q ss_pred             ccc-ccccccccCccccCCCCC
Q 028629          184 ENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       184 ~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      ... .......++.+|+|||..
T Consensus       160 ~~~~~~~~~~~~t~~y~aPE~~  181 (325)
T 3kn6_A          160 PPDNQPLKTPCFTLHYAAPELL  181 (325)
T ss_dssp             CC--------------------
T ss_pred             CCCCCcccccCCCcCccCHHHh
Confidence            543 233446778999999975

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.97  E-value=1.4e-31  Score=204.99  Aligned_cols=170  Identities=19%  Similarity=0.305  Sum_probs=140.1

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ..++|...+.||+|++|.||+|... +++.||+|.+....   ....+.+.+|+..++.++|+||+++++++..      
T Consensus         9 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~------   82 (276)
T 2h6d_A            9 KIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVIST------   82 (276)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC------
T ss_pred             eeccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEec------
Confidence            3578999999999999999999986 79999999996432   3345678899999999999999999998865      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       .+..+++||++++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+||
T Consensus        83 -~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~l~df  155 (276)
T 2h6d_A           83 -PTDFFMVMEYVSGGELFDYICKH---GRVEEMEARRLFQQILSAVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADF  155 (276)
T ss_dssp             -SSEEEEEEECCCSCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---HCSSCCCCCGGGEEECTTSCEEECCC
T ss_pred             -CCeEEEEEeccCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCChhhEEECCCCCEEEeec
Confidence             56899999999999999999765   358899999999999999999999   79999999999999999999999999


Q ss_pred             CccccccccccccccccCccccCCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |++.............++..|+|||..
T Consensus       156 g~~~~~~~~~~~~~~~~~~~y~aPE~~  182 (276)
T 2h6d_A          156 GLSNMMSDGEFLRTSCGSPNYAAPEVI  182 (276)
T ss_dssp             CGGGCCCC-------------CCTGGG
T ss_pred             ccccccCCCcceecccCCccccCHHHH
Confidence            999887665555556788999999964

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.97  E-value=8.2e-32  Score=211.69  Aligned_cols=167  Identities=13%  Similarity=0.169  Sum_probs=143.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|+..+.||+|+||.||+|... +++.||+|.+.....  .+.+.+|+.+++++ +|+||+++++++..       ..
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~-------~~   78 (330)
T 2izr_A            8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPC-------GK   78 (330)
T ss_dssp             TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEE-------TT
T ss_pred             cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEec-------CC
Confidence            478999999999999999999975 799999999875432  34578899999999 89999999998865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc-----eeEc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV-----AKIS  175 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~-----~kl~  175 (206)
                      ..+++||++ +++|.+++....  ..+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.     ++|+
T Consensus        79 ~~~lv~e~~-~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH~---~~iiHrDlkp~Nill~~~~~~~~~~~kl~  152 (330)
T 2izr_A           79 YNAMVLELL-GPSLEDLFDLCD--RTFSLKTVLMIAIQLISRMEYVHS---KNLIYRDVKPENFLIGRPGNKTQQVIHII  152 (330)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECCGGGTCTTSEEEC
T ss_pred             ccEEEEEeC-CCCHHHHHHHcC--CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHeeeccCCCCCCceEEEE
Confidence            789999999 889999998643  468999999999999999999999   79999999999999998877     9999


Q ss_pred             cCCcccccccccc--------ccccccCccccCCCCC
Q 028629          176 SYNLPLLAENAEK--------VGHVTPYSGSINPTNS  204 (206)
Q Consensus       176 df~~a~~~~~~~~--------~~~~~~~~~y~aPE~~  204 (206)
                      |||++........        .....||..|+|||..
T Consensus       153 DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  189 (330)
T 2izr_A          153 DFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTH  189 (330)
T ss_dssp             CCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHH
T ss_pred             EcccceeeecCCCCccccccccCCcCCCccccChHHH
Confidence            9999987654332        2456889999999953

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.97  E-value=1.4e-31  Score=218.71  Aligned_cols=167  Identities=20%  Similarity=0.398  Sum_probs=141.5

Q ss_pred             HhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ..++|+..+.||+|+||.||+|... +..||+|.++...  ..+.+.+|+.++++++|+||+++++++..      ..+.
T Consensus       191 ~~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~------~~~~  261 (450)
T 1k9a_A          191 NMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVE------EKGG  261 (450)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEEC------TTSC
T ss_pred             ChHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEc------CCCc
Confidence            4578899999999999999999885 7899999997543  45778999999999999999999998764      2346


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .+++|||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+++||||+|+|||+++++.+||+|||+++
T Consensus       262 ~~iv~e~~~~g~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~DfG~a~  337 (450)
T 1k9a_A          262 LYIVTEYMAKGSLVDYLRSRGR-SVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTK  337 (450)
T ss_dssp             EEEEEECCTTCBHHHHHHHHCT-TTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             eEEEEEecCCCcHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHhhEEECCCCCEEEeeCCCcc
Confidence            8999999999999999986432 347899999999999999999999   799999999999999999999999999998


Q ss_pred             cccccccccccccCccccCCCC
Q 028629          182 LAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       182 ~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      .......  ...++..|+|||.
T Consensus       338 ~~~~~~~--~~~~~~~y~aPE~  357 (450)
T 1k9a_A          338 EASSTQD--TGKLPVKWTAPEA  357 (450)
T ss_dssp             ECC--------CCCTTTSCHHH
T ss_pred             ccccccc--CCCCCcceeCHHH
Confidence            6544322  2366788999995

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.97  E-value=8.4e-32  Score=206.91  Aligned_cols=174  Identities=20%  Similarity=0.384  Sum_probs=147.4

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccC----
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD----   96 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~----   96 (206)
                      ..++|+..+.||+|+||.||+|... +++.||+|.+....    ..+.+|++++++++|+||+++++++....+..    
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   84 (284)
T 2a19_B            9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS   84 (284)
T ss_dssp             HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred             hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence            3567999999999999999999986 79999999997543    34567999999999999999999775422111    


Q ss_pred             -----CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc
Q 028629           97 -----SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV  171 (206)
Q Consensus        97 -----~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~  171 (206)
                           ......+++|||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.
T Consensus        85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~  160 (284)
T 2a19_B           85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRG-EKLDKVLALELFEQITKGVDYIHS---KKLINRDLKPSNIFLVDTKQ  160 (284)
T ss_dssp             ----CCEEEEEEEEECCCCSCBHHHHHHHGGG-SCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTE
T ss_pred             ccccccCcceEEEEEeccCCCCHHHHHhhccC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCCHHHEEEcCCCC
Confidence                 124568999999999999999975432 468999999999999999999999   79999999999999999999


Q ss_pred             eeEccCCccccccccccccccccCccccCCCC
Q 028629          172 AKISSYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       172 ~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      ++|+|||++.............++..|+|||.
T Consensus       161 ~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~  192 (284)
T 2a19_B          161 VKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQ  192 (284)
T ss_dssp             EEECCCTTCEESSCCSCCCCCCSCCTTSCHHH
T ss_pred             EEECcchhheeccccccccccCCcccccChhh
Confidence            99999999988776655556788999999995

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.97  E-value=9.5e-32  Score=210.99  Aligned_cols=171  Identities=18%  Similarity=0.337  Sum_probs=146.4

Q ss_pred             hcCCcccceeccCcceeEEEEEE-----eCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRL-----KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .++|+..+.||+|+||.||+|.+     .++..||+|.+........+.+.+|++++++++|+||+++++++..     .
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~   96 (327)
T 3lxl_A           22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYG-----P   96 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----S
T ss_pred             hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEec-----C
Confidence            46899999999999999999984     2688999999986655556778999999999999999999998754     2


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      .....+++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||||+||++++++.++|+||
T Consensus        97 ~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dikp~NIl~~~~~~~kl~Df  171 (327)
T 3lxl_A           97 GRQSLRLVMEYLPSGCLRDFLQRHR--ARLDASRLLLYSSQICKGMEYLGS---RRCVHRDLAARNILVESEAHVKIADF  171 (327)
T ss_dssp             SSCEEEEEEECCTTCBHHHHHHHHG--GGCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCG
T ss_pred             CCceEEEEEeecCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCChhhEEECCCCCEEEccc
Confidence            3567899999999999999997632  458999999999999999999999   79999999999999999999999999


Q ss_pred             Cccccccccc----cccccccCccccCCCC
Q 028629          178 NLPLLAENAE----KVGHVTPYSGSINPTN  203 (206)
Q Consensus       178 ~~a~~~~~~~----~~~~~~~~~~y~aPE~  203 (206)
                      |++.......    ......++..|+|||.
T Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  201 (327)
T 3lxl_A          172 GLAKLLPLDKDYYVVREPGQSPIFWYAPES  201 (327)
T ss_dssp             GGCEECCTTCSEEECSSCCCSCGGGSCHHH
T ss_pred             ccceecccCCccceeeccCCccccccCHHH
Confidence            9998765433    2223456777999995

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.97  E-value=2e-31  Score=206.12  Aligned_cols=170  Identities=19%  Similarity=0.272  Sum_probs=147.2

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ..++|...+.||+|+||.||++... +++.+|+|.+....   ....+.+.+|+.+++.+.|+||+++++++..      
T Consensus        13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------   86 (294)
T 2rku_A           13 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFED------   86 (294)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC------
T ss_pred             cccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeecc------
Confidence            3578999999999999999999986 68899999987543   2334678889999999999999999998865      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       .+..+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+||
T Consensus        87 -~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~df  159 (294)
T 2rku_A           87 -NDFVFVVLELCRRRSLLELHKRR---KALTEPEARYYLRQIVLGCQYLHR---NRVIHRDLKLGNLFLNEDLEVKIGDF  159 (294)
T ss_dssp             -SSEEEEEEECCTTCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCC
T ss_pred             -CCEEEEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEcCCCCEEEEec
Confidence             56799999999999999988765   458999999999999999999999   79999999999999999999999999


Q ss_pred             Ccccccccc-ccccccccCccccCCCCC
Q 028629          178 NLPLLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      |++...... .......++..|+|||..
T Consensus       160 g~~~~~~~~~~~~~~~~~~~~y~aPE~~  187 (294)
T 2rku_A          160 GLATKVEYDGERKKVLCGTPNYIAPEVL  187 (294)
T ss_dssp             TTCEECCSTTCCBCCCCSCCSSCCHHHH
T ss_pred             cCceecccCccccccccCCCCcCCcchh
Confidence            999876533 334446788999999953

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=7.4e-32  Score=212.83  Aligned_cols=177  Identities=15%  Similarity=0.161  Sum_probs=143.8

Q ss_pred             HHHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC-----CCccHHHHHHHHHHHhccCCCceeeecccccc
Q 028629           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK-----KSHSTRNFMHHIELISKLRHCHLVSALGHCFE   91 (206)
Q Consensus        18 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~-----~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   91 (206)
                      +.....++|+..+.||+|+||.||+|... ++..||+|++...     .....+.+.+|+.++++++||||+++++++.+
T Consensus        20 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~   99 (345)
T 3hko_A           20 SLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYED   99 (345)
T ss_dssp             CHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             hhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhcc
Confidence            34455788999999999999999999976 7889999998653     23455788999999999999999999999865


Q ss_pred             ccccCCCCceEEEEEeecCCCCHHHHHhcCC-------------------------------------CCcccCHHHHHH
Q 028629           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGH-------------------------------------AWQSLTWTQRIS  134 (206)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~-------------------------------------~~~~~~~~~~~~  134 (206)
                             .+..+++|||+++++|.+++....                                     ....+++..++.
T Consensus       100 -------~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (345)
T 3hko_A          100 -------EQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISN  172 (345)
T ss_dssp             -------SSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHH
T ss_pred             -------CCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHH
Confidence                   668999999999999999885210                                     012346788889


Q ss_pred             HHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC--ceeEccCCccccccccc-----cccccccCccccCCCCC
Q 028629          135 AAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL--VAKISSYNLPLLAENAE-----KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       135 ~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~--~~kl~df~~a~~~~~~~-----~~~~~~~~~~y~aPE~~  204 (206)
                      ++.|++.||.|||+   .+++|+||+|+||+++.++  .++|+|||++.......     ......+++.|+|||..
T Consensus       173 i~~qi~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  246 (345)
T 3hko_A          173 IMRQIFSALHYLHN---QGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVL  246 (345)
T ss_dssp             HHHHHHHHHHHHHH---TTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHH
T ss_pred             HHHHHHHHHHHHHH---CCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhh
Confidence            99999999999999   7999999999999998776  89999999998654321     23446789999999953

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.97  E-value=9.5e-32  Score=206.46  Aligned_cols=168  Identities=20%  Similarity=0.344  Sum_probs=142.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|+..+.||+|+||.||+|... ++..||+|++....   ......+.+|+.+++.++|+||+++++++.+       
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------   80 (279)
T 3fdn_A            8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHD-------   80 (279)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-------
T ss_pred             cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEec-------
Confidence            567999999999999999999976 68899999986432   2234578889999999999999999999865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+..+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~~~---~~~~~~~~~~~~~qi~~~l~~LH~---~~i~H~dlkp~Nili~~~~~~~l~Dfg  154 (279)
T 3fdn_A           81 ATRVYLILEYAPLGTVYRELQKL---SKFDEQRTATYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFG  154 (279)
T ss_dssp             SSEEEEEECCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHT---TTCEECCCCGGGEEECTTSCEEECSCC
T ss_pred             CCEEEEEEecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCEecccCChHhEEEcCCCCEEEEecc
Confidence            56799999999999999998765   358899999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccccccccccCccccCCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ++....... .....++..|+|||..
T Consensus       155 ~~~~~~~~~-~~~~~~~~~y~aPE~~  179 (279)
T 3fdn_A          155 WSVHAPSSR-RTDLCGTLDYLPPEMI  179 (279)
T ss_dssp             EESCC---------CCCCTTCCHHHH
T ss_pred             ccccCCccc-ccccCCCCCccCHhHh
Confidence            987655433 3346788999999953

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.97  E-value=1.9e-31  Score=210.04  Aligned_cols=168  Identities=19%  Similarity=0.278  Sum_probs=146.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|...+.||+|+||.||++... +++.+|+|.+....   ....+.+.+|+.+++.++|+||+++++++.+       
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------  112 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFED-------  112 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC-------
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec-------
Confidence            468999999999999999999976 68899999987543   2345678889999999999999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+..+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||
T Consensus       113 ~~~~~lv~e~~~~~~L~~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~Dfg  186 (335)
T 2owb_A          113 NDFVFVVLELCRRRSLLELHKRR---KALTEPEARYYLRQIVLGCQYLHR---NRVIHRDLKLGNLFLNEDLEVKIGDFG  186 (335)
T ss_dssp             SSEEEEEECCCTTCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCT
T ss_pred             CCeEEEEEecCCCCCHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHH---CCCEecCCCchhEEEcCCCCEEEeecc
Confidence            56899999999999999988765   458999999999999999999999   799999999999999999999999999


Q ss_pred             cccccccc-ccccccccCccccCCCC
Q 028629          179 LPLLAENA-EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       179 ~a~~~~~~-~~~~~~~~~~~y~aPE~  203 (206)
                      ++...... .......++..|+|||.
T Consensus       187 ~~~~~~~~~~~~~~~~gt~~y~aPE~  212 (335)
T 2owb_A          187 LATKVEYDGERKKVLCGTPNYIAPEV  212 (335)
T ss_dssp             TCEECCSTTCCBCCCCSCCSSCCHHH
T ss_pred             CceecccCcccccccCCCccccCHHH
Confidence            99876533 33444678899999995

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.97  E-value=1.7e-31  Score=210.57  Aligned_cols=173  Identities=23%  Similarity=0.380  Sum_probs=144.4

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEeC------CcEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeecccccccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLKN------GTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECY   93 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~~------~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   93 (206)
                      ...++|...+.||+|+||.||+|...+      +..||+|.+..... ...+.+.+|+.++++++|+||+++++++..  
T Consensus        44 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--  121 (343)
T 1luf_A           44 YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAV--  121 (343)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS--
T ss_pred             ecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc--
Confidence            345789999999999999999999752      37899999975532 334678899999999999999999998865  


Q ss_pred             ccCCCCceEEEEEeecCCCCHHHHHhcCCC---------------------CcccCHHHHHHHHHHHHHHHHHHhcCCCC
Q 028629           94 FDDSSVSRIFLIFEYVPNGTLRSWISEGHA---------------------WQSLTWTQRISAAIGVARGIQFLHTGIVP  152 (206)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~---------------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~  152 (206)
                           .+..+++|||+++++|.+++.....                     ...+++..++.++.|++.||.|||+   .
T Consensus       122 -----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~---~  193 (343)
T 1luf_A          122 -----GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE---R  193 (343)
T ss_dssp             -----SSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHH---T
T ss_pred             -----CCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHh---C
Confidence                 5678999999999999999976321                     1468999999999999999999999   7


Q ss_pred             ceeccCCccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCC
Q 028629          153 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       153 ~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                      +++|+||||+||++++++.++|+|||++.......   ......++..|+|||.
T Consensus       194 ~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~  247 (343)
T 1luf_A          194 KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPES  247 (343)
T ss_dssp             TCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHH
T ss_pred             CeecCCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhh
Confidence            99999999999999999999999999998764432   2233567788999995

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.97  E-value=1.1e-31  Score=204.73  Aligned_cols=169  Identities=20%  Similarity=0.336  Sum_probs=145.4

Q ss_pred             HhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ..++|+..+.||+|+||.||+|...++..||+|.+.... ...+.+.+|++++++++|+||+++++++..       .+.
T Consensus         6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~~   77 (267)
T 3t9t_A            6 DPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLE-------QAP   77 (267)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTT-BCHHHHHHHHHHHHTCCCTTBCCEEEEECS-------SSS
T ss_pred             chhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcc-------CCC
Confidence            356899999999999999999998878899999997543 345678999999999999999999998865       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .+++||++++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||++.
T Consensus        78 ~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nili~~~~~~kl~dfg~~~  152 (267)
T 3t9t_A           78 ICLVTEFMEHGCLSDYLRTQR--GLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTR  152 (267)
T ss_dssp             CEEEECCCTTCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECGGGCEEECCTTGGG
T ss_pred             eEEEEeCCCCCcHHHHHhhCc--ccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCchheEEECCCCCEEEccccccc
Confidence            899999999999999997653  358899999999999999999999   799999999999999999999999999998


Q ss_pred             cccccc--cccccccCccccCCCC
Q 028629          182 LAENAE--KVGHVTPYSGSINPTN  203 (206)
Q Consensus       182 ~~~~~~--~~~~~~~~~~y~aPE~  203 (206)
                      ......  ......++..|+|||.
T Consensus       153 ~~~~~~~~~~~~~~~~~~y~aPE~  176 (267)
T 3t9t_A          153 FVLDDQYTSSTGTKFPVKWASPEV  176 (267)
T ss_dssp             GBCCHHHHSTTSTTCCGGGCCHHH
T ss_pred             ccccccccccccccccccccChhh
Confidence            765432  2223455678999985

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.97  E-value=2.5e-31  Score=203.58  Aligned_cols=170  Identities=21%  Similarity=0.295  Sum_probs=147.4

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ..++|+..+.||+|++|.||+|... +++.||+|.+.... ....+.+.+|+.+++.++|+||+++++++..       .
T Consensus         5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~   77 (276)
T 2yex_A            5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRRE-------G   77 (276)
T ss_dssp             HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-------T
T ss_pred             eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEc-------C
Confidence            3567999999999999999999976 79999999997543 3445678899999999999999999998865       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +..++++|++++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||.
T Consensus        78 ~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~  151 (276)
T 2yex_A           78 NIQYLFLEYCSGGELFDRIEPD---IGMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGL  151 (276)
T ss_dssp             TEEEEEEECCTTEEGGGGSBTT---TBCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred             CEEEEEEEecCCCcHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCChHHEEEccCCCEEEeeCCC
Confidence            6789999999999999988754   458999999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccc---cccccccCccccCCCCC
Q 028629          180 PLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      +.......   ......++..|+|||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~  179 (276)
T 2yex_A          152 ATVFRYNNRERLLNKMCGTLPYVAPELL  179 (276)
T ss_dssp             CEECEETTEECCBCCCCSCGGGCCGGGG
T ss_pred             ccccCCCcchhcccCCccccCccChHHH
Confidence            98664332   23345788899999964

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.97  E-value=1.9e-31  Score=206.78  Aligned_cols=171  Identities=20%  Similarity=0.376  Sum_probs=142.2

Q ss_pred             hcCCcccceeccCcceeEEEEEE-----eCCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRL-----KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~-----~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      .++|+..+.||+|+||.||+|.+     .+++.||+|.+.... ....+.+.+|+.++++++|+||+++++++..     
T Consensus        20 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----   94 (302)
T 4e5w_A           20 KRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTE-----   94 (302)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----
T ss_pred             hhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEec-----
Confidence            45689999999999999999984     268899999997543 3445778999999999999999999998865     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                      ......+++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+|
T Consensus        95 ~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~D  169 (302)
T 4e5w_A           95 DGGNGIKLIMEFLPSGSLKEYLPKNK--NKINLKQQLKYAVQICKGMDYLGS---RQYVHRDLAARNVLVESEHQVKIGD  169 (302)
T ss_dssp             ---CCEEEEEECCTTCBHHHHHHHHT--TTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECC
T ss_pred             CCCceEEEEEEeCCCCcHHHHHHhcc--ccCCHHHHHHHHHHHHHHHHHhhc---CCcccCCCchheEEEcCCCCEEECc
Confidence            22356899999999999999995533  458999999999999999999999   7999999999999999999999999


Q ss_pred             CCccccccccc----cccccccCccccCCCC
Q 028629          177 YNLPLLAENAE----KVGHVTPYSGSINPTN  203 (206)
Q Consensus       177 f~~a~~~~~~~----~~~~~~~~~~y~aPE~  203 (206)
                      ||++.......    ......++..|+|||.
T Consensus       170 fg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  200 (302)
T 4e5w_A          170 FGLTKAIETDKEYYTVKDDRDSPVFWYAPEC  200 (302)
T ss_dssp             CTTCEECCTTCCEEECCCCTTCCGGGCCHHH
T ss_pred             ccccccccCCCcceeccCCCCCCccccCCee
Confidence            99998775543    2333566777999995

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.97  E-value=2e-31  Score=211.11  Aligned_cols=164  Identities=19%  Similarity=0.335  Sum_probs=141.6

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc---cHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH---STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      +.|...+.||+|+||.||+|... ++..||+|.+......   ..+.+.+|++++++++|+||+++++++..       .
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-------~  126 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR-------E  126 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-------T
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-------C
Confidence            56899999999999999999975 7999999999754322   23568899999999999999999998876       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +..+++|||+. |++.+.+....  ..+++..++.++.|++.||.|||+   .+++|+||||+||++++++.+||+|||+
T Consensus       127 ~~~~lv~e~~~-g~l~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~  200 (348)
T 1u5q_A          127 HTAWLVMEYCL-GSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGS  200 (348)
T ss_dssp             TEEEEEEECCS-EEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTEEEECCCTT
T ss_pred             CeEEEEEecCC-CCHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEECCCCCEEEeeccC
Confidence            68999999997 58888775432  468999999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      +......   ....+++.|+|||.
T Consensus       201 a~~~~~~---~~~~gt~~y~aPE~  221 (348)
T 1u5q_A          201 ASIMAPA---NSFVGTPYWMAPEV  221 (348)
T ss_dssp             CBSSSSB---CCCCSCGGGCCHHH
T ss_pred             ceecCCC---CcccCCcceeCHhh
Confidence            9876543   33578999999995

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.97  E-value=2.3e-31  Score=213.17  Aligned_cols=172  Identities=21%  Similarity=0.388  Sum_probs=144.3

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe--------CCcEEEEEEeecCC-CccHHHHHHHHHHHhcc-CCCceeeecccccc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK--------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFE   91 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~--------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~   91 (206)
                      ..++|...+.||+|+||.||+|...        .+..||+|++.... ....+.+.+|+++++++ +|+||+++++++..
T Consensus        67 ~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~  146 (382)
T 3tt0_A           67 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ  146 (382)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             chhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeecc
Confidence            3578999999999999999999963        23579999997553 23346788999999999 89999999998865


Q ss_pred             ccccCCCCceEEEEEeecCCCCHHHHHhcCCC-------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccC
Q 028629           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA-------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNN  158 (206)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~d  158 (206)
                             .+..+++|||+++++|.+++.....             ...+++..++.++.|++.||.|||+   .+|+|+|
T Consensus       147 -------~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~D  216 (382)
T 3tt0_A          147 -------DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KKCIHRD  216 (382)
T ss_dssp             -------SSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSC
T ss_pred             -------CCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHh---CCEecCC
Confidence                   5678999999999999999976431             1358999999999999999999999   7999999


Q ss_pred             CccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCC
Q 028629          159 LKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       159 l~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                      |||+||++++++.+||+|||+++......   ......++..|+|||.
T Consensus       217 lkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~  264 (382)
T 3tt0_A          217 LAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEA  264 (382)
T ss_dssp             CCGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHH
T ss_pred             CCcceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHH
Confidence            99999999999999999999998765432   2333466778999995

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.97  E-value=8.4e-32  Score=209.76  Aligned_cols=176  Identities=22%  Similarity=0.342  Sum_probs=145.8

Q ss_pred             HHHHHhcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccc
Q 028629           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCF   90 (206)
Q Consensus        18 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~   90 (206)
                      ++....++|...+.||+|+||.||+|...      ++..||+|.+.... ....+.+.+|+.++++++||||+++++++.
T Consensus        17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~   96 (314)
T 2ivs_A           17 KWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACS   96 (314)
T ss_dssp             TTBCCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC
T ss_pred             ccccchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEe
Confidence            33344678999999999999999999862      35789999997543 233467889999999999999999999886


Q ss_pred             cccccCCCCceEEEEEeecCCCCHHHHHhcCCC---------------------CcccCHHHHHHHHHHHHHHHHHHhcC
Q 028629           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA---------------------WQSLTWTQRISAAIGVARGIQFLHTG  149 (206)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~---------------------~~~~~~~~~~~~~~~i~~~l~~lH~~  149 (206)
                      .       .+..+++|||+++++|.+++.....                     ...+++..++.++.|++.||.|||+ 
T Consensus        97 ~-------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~-  168 (314)
T 2ivs_A           97 Q-------DGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAE-  168 (314)
T ss_dssp             S-------SSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHH-
T ss_pred             c-------CCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHH-
Confidence            5       5678999999999999999976432                     1348899999999999999999999 


Q ss_pred             CCCceeccCCccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCC
Q 028629          150 IVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       150 ~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                        .+++|+||||+||++++++.++|+|||++.......   ......++..|+|||.
T Consensus       169 --~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  223 (314)
T 2ivs_A          169 --MKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIES  223 (314)
T ss_dssp             --TTEECCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHH
T ss_pred             --CCCcccccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhh
Confidence              799999999999999999999999999998764432   2233456678999995

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.97  E-value=2.9e-31  Score=213.85  Aligned_cols=170  Identities=16%  Similarity=0.240  Sum_probs=132.8

Q ss_pred             hcCCccc-ceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhc-cCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTS-AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISK-LRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~-~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|... +.||.|+||.||+|... +++.||+|++...     ..+.+|++++.+ .+|+||+++++++....   ...
T Consensus        60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~---~~~  131 (400)
T 1nxk_A           60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLY---AGR  131 (400)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEE---TTE
T ss_pred             cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecc---cCC
Confidence            3456665 68999999999999976 7999999998632     456678887744 48999999999874311   124


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC---CCceeEcc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---NLVAKISS  176 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~---~~~~kl~d  176 (206)
                      ..+++||||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.   ++.+||+|
T Consensus       132 ~~~~lv~E~~~gg~L~~~l~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~~~~kl~D  207 (400)
T 1nxk_A          132 KCLLIVMECLDGGELFSRIQDRGD-QAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTD  207 (400)
T ss_dssp             EEEEEEEECCCSEEHHHHHHCC----CCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSTTCCEEECC
T ss_pred             cEEEEEEEeCCCCcHHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCcCcceEEEecCCCCccEEEEe
Confidence            578999999999999999986532 468999999999999999999999   79999999999999997   78999999


Q ss_pred             CCccccccccccccccccCccccCCCCC
Q 028629          177 YNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ||+++............+|..|+|||..
T Consensus       208 FG~a~~~~~~~~~~~~~gt~~y~aPE~~  235 (400)
T 1nxk_A          208 FGFAKETTSHNSLTTPCYTPYYVAPEVL  235 (400)
T ss_dssp             CTTCEECC-----------CTTCCGGGS
T ss_pred             cccccccCCCCccccCCCCCCccCHhhc
Confidence            9999877665555567889999999975

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.97  E-value=5.2e-32  Score=212.03  Aligned_cols=193  Identities=14%  Similarity=0.268  Sum_probs=132.2

Q ss_pred             CCCccceeCHHHHHHHhcCCcccceeccCcceeEEEEEEe-CCc---EEEEEEeecC--CCccHHHHHHHHHHHhccCCC
Q 028629            7 GLPAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGT---FIAIRCLKMK--KSHSTRNFMHHIELISKLRHC   80 (206)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~---~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~   80 (206)
                      +.+....-.+.+.....++|+..+.||+|+||.||+|... ++.   .||+|.+...  .....+.+.+|+.++++++|+
T Consensus         6 ~~~~~~~~~~~~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~   85 (323)
T 3qup_A            6 GISDELKEKLEDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHP   85 (323)
T ss_dssp             ----------CTTBCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCT
T ss_pred             cchHHHHHHhhhcccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCC
Confidence            3444444445555566789999999999999999999965 333   7999999754  344467889999999999999


Q ss_pred             ceeeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCC---CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceecc
Q 028629           81 HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGH---AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSN  157 (206)
Q Consensus        81 ~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~  157 (206)
                      ||+++++++......+ .....++++||+++++|.+++....   ....+++..++.++.|++.||.|||+   .+++|+
T Consensus        86 ~iv~~~~~~~~~~~~~-~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~---~~ivH~  161 (323)
T 3qup_A           86 HVAKLVGVSLRSRAKG-RLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSS---RNFIHR  161 (323)
T ss_dssp             TBCCCCEEEECC--------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCS
T ss_pred             ceehhhceeecccccc-CCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHc---CCcccC
Confidence            9999999886521110 1123489999999999999986421   11258999999999999999999999   799999


Q ss_pred             CCccccEEecCCCceeEccCCcccccccccc---ccccccCccccCCCC
Q 028629          158 NLKITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTN  203 (206)
Q Consensus       158 dl~p~nil~~~~~~~kl~df~~a~~~~~~~~---~~~~~~~~~y~aPE~  203 (206)
                      ||||+||++++++.++|+|||++........   .....++..|+|||.
T Consensus       162 Dikp~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~  210 (323)
T 3qup_A          162 DLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALES  210 (323)
T ss_dssp             CCSGGGEEECTTSCEEECCCCC-----------------CCGGGCCHHH
T ss_pred             CCCcceEEEcCCCCEEEeeccccccccccccccccccccCcccccCchh
Confidence            9999999999999999999999987654322   222455668999995

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.97  E-value=5.6e-31  Score=202.87  Aligned_cols=166  Identities=20%  Similarity=0.414  Sum_probs=141.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCcc-------HHHHHHHHHHHhccCCCceeeeccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHS-------TRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~-------~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   94 (206)
                      .++|+..+.||+|+||.||+|... +++.||+|.+.......       .+.+.+|+.++++++|+||+++++++.+   
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---   94 (287)
T 4f0f_A           18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHN---   94 (287)
T ss_dssp             STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETT---
T ss_pred             hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecC---
Confidence            478999999999999999999976 79999999986543221       1578899999999999999999998754   


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCc--eeccCCccccEEecCCCc-
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG--VFSNNLKITDILLDQNLV-  171 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~--i~h~dl~p~nil~~~~~~-  171 (206)
                            ..+++|||+++++|.+.+....  ..+++..++.++.|++.||.|||+   .+  ++|+||||+||+++.++. 
T Consensus        95 ------~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~lH~---~~~~ivH~dikp~Nil~~~~~~~  163 (287)
T 4f0f_A           95 ------PPRMVMEFVPCGDLYHRLLDKA--HPIKWSVKLRLMLDIALGIEYMQN---QNPPIVHRDLRSPNIFLQSLDEN  163 (287)
T ss_dssp             ------TTEEEEECCTTCBHHHHHHCTT--SCCCHHHHHHHHHHHHHHHHHHHT---SSSCCBCSCCSGGGEEESCCCTT
T ss_pred             ------CCeEEEEecCCCCHHHHHhccc--CCccHHHHHHHHHHHHHHHHHHHh---CCCCeecCCCCcceEEEeccCCC
Confidence                  2369999999999998886643  468999999999999999999999   68  999999999999987766 


Q ss_pred             ----eeEccCCccccccccccccccccCccccCCCCC
Q 028629          172 ----AKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       172 ----~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                          ++|+|||++......  .....++..|+|||..
T Consensus       164 ~~~~~kl~Dfg~~~~~~~~--~~~~~g~~~y~aPE~~  198 (287)
T 4f0f_A          164 APVCAKVADFGLSQQSVHS--VSGLLGNFQWMAPETI  198 (287)
T ss_dssp             CSCCEEECCCTTCBCCSSC--EECCCCCCTTSCGGGS
T ss_pred             CceeEEeCCCCcccccccc--ccccCCCccccCchhh
Confidence                999999999865543  3346789999999975

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.97  E-value=1.3e-31  Score=207.74  Aligned_cols=170  Identities=17%  Similarity=0.363  Sum_probs=142.2

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ..++|+..+.||+|+||.||+|... ++..||+|.+........+.+.+|+.+++.++||||+++++++..       .+
T Consensus        17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~   89 (302)
T 2j7t_A           17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYH-------DG   89 (302)
T ss_dssp             GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-------C-
T ss_pred             CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeee-------CC
Confidence            4678999999999999999999986 689999999986666667889999999999999999999998865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..+++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++
T Consensus        90 ~~~lv~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  164 (302)
T 2j7t_A           90 KLWIMIEFCPGGAVDAIMLELD--RGLTEPQIQVVCRQMLEALNFLHS---KRIIHRDLKAGNVLMTLEGDIRLADFGVS  164 (302)
T ss_dssp             CEEEEEECCTTEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTSCEEECCCHHH
T ss_pred             eEEEEEEeCCCCcHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHHHEEECCCCCEEEEECCCC
Confidence            7999999999999999886532  358999999999999999999999   79999999999999999999999999998


Q ss_pred             cccccc-ccccccccCccccCCCC
Q 028629          181 LLAENA-EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~y~aPE~  203 (206)
                      ...... .......++..|+|||.
T Consensus       165 ~~~~~~~~~~~~~~~~~~y~aPE~  188 (302)
T 2j7t_A          165 AKNLKTLQKRDSFIGTPYWMAPEV  188 (302)
T ss_dssp             HHHHHHHHC-----CCGGGCCHHH
T ss_pred             ccccccccccccccCChhhcCCee
Confidence            654322 23334578899999995

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=1.7e-31  Score=210.82  Aligned_cols=175  Identities=23%  Similarity=0.394  Sum_probs=143.4

Q ss_pred             HHHHhcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCC-CccHHHHHHHHHHHhcc-CCCceeeeccccc
Q 028629           19 LEEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCF   90 (206)
Q Consensus        19 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~   90 (206)
                      +....++|...+.||+|+||.||+|...      ++..||+|.+.... ....+.+.+|+.+++++ .||||+++++++.
T Consensus        40 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~  119 (344)
T 1rjb_A           40 WEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACT  119 (344)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe
Confidence            3445678999999999999999999962      35689999997442 33456789999999999 8999999999886


Q ss_pred             cccccCCCCceEEEEEeecCCCCHHHHHhcCCC--------------------CcccCHHHHHHHHHHHHHHHHHHhcCC
Q 028629           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA--------------------WQSLTWTQRISAAIGVARGIQFLHTGI  150 (206)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~--------------------~~~~~~~~~~~~~~~i~~~l~~lH~~~  150 (206)
                      .       .+..+++|||+++++|.+++.....                    ...+++..++.++.|++.||.|||+  
T Consensus       120 ~-------~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~--  190 (344)
T 1rjb_A          120 L-------SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF--  190 (344)
T ss_dssp             S-------SSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHH--
T ss_pred             e-------CCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHh--
Confidence            5       5678999999999999999976432                    1237899999999999999999999  


Q ss_pred             CCceeccCCccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCC
Q 028629          151 VPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       151 ~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                       .+++|+||||+||+++.++.++|+|||++.......   ......++..|+|||.
T Consensus       191 -~~ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~  245 (344)
T 1rjb_A          191 -KSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPES  245 (344)
T ss_dssp             -TTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHH
T ss_pred             -CCcccCCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHH
Confidence             799999999999999999999999999998765432   2333456778999995

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.97  E-value=3.5e-31  Score=210.12  Aligned_cols=182  Identities=16%  Similarity=0.174  Sum_probs=137.6

Q ss_pred             HHHHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           17 EELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        17 ~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      .......++|+..+.||+|+||.||+|... ++..||+|.+.... .......++++.++.++|+||+++++++......
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~   94 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER   94 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence            355667889999999999999999999986 79999999986443 3334566788888999999999999988663333


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhc-CCCCcccCHHHHHHHHHHHHHHHHHHh--cCCCCceeccCCccccEEecC-CCc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISE-GHAWQSLTWTQRISAAIGVARGIQFLH--TGIVPGVFSNNLKITDILLDQ-NLV  171 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~lH--~~~~~~i~h~dl~p~nil~~~-~~~  171 (206)
                      .......+++|||+++ ++.+.+.. ......+++..++.++.|++.||.|||  +   .+|+|+||||+||+++. ++.
T Consensus        95 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---~~ivH~Dlkp~NIll~~~~~~  170 (360)
T 3e3p_A           95 DRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPS---VNVCHRDIKPHNVLVNEADGT  170 (360)
T ss_dssp             CTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTT---TCCBCSCCCGGGEEEETTTTE
T ss_pred             cccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCC---CCeecCcCCHHHEEEeCCCCc
Confidence            3334458899999987 55544432 111156889999999999999999999  7   79999999999999996 899


Q ss_pred             eeEccCCccccccccccccccccCccccCCCC
Q 028629          172 AKISSYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       172 ~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      +||+|||++.............++..|+|||.
T Consensus       171 ~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~  202 (360)
T 3e3p_A          171 LKLCDFGSAKKLSPSEPNVAYICSRYYRAPEL  202 (360)
T ss_dssp             EEECCCTTCBCCCTTSCCCSTTSCGGGCCHHH
T ss_pred             EEEeeCCCceecCCCCCcccccCCcceeCHHH
Confidence            99999999998876666666788999999995

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=9.2e-32  Score=213.55  Aligned_cols=168  Identities=19%  Similarity=0.298  Sum_probs=143.6

Q ss_pred             cCCcccceeccCcceeEEEEEEe----CCcEEEEEEeecCC----CccHHHHHHHHHHHhcc-CCCceeeeccccccccc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK----SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYF   94 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~----~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~   94 (206)
                      ++|...+.||+|+||.||+|...    +++.||+|++....    ....+.+.+|+++++.+ +|+||+++++++..   
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~---  130 (355)
T 1vzo_A           54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT---  130 (355)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEE---
T ss_pred             cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEee---
Confidence            68999999999999999999972    68999999986432    22345567799999999 69999999998865   


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeE
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI  174 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl  174 (206)
                          ....+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+|+|+||||+|||++.++.+||
T Consensus       131 ----~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kl  200 (355)
T 1vzo_A          131 ----ETKLHLILDYINGGELFTHLSQR---ERFTEHEVQIYVGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVL  200 (355)
T ss_dssp             ----TTEEEEEECCCCSCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEE
T ss_pred             ----CceEEEEeecCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEECCCCcEEE
Confidence                56899999999999999999765   458899999999999999999999   79999999999999999999999


Q ss_pred             ccCCcccccccc--ccccccccCccccCCCCC
Q 028629          175 SSYNLPLLAENA--EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       175 ~df~~a~~~~~~--~~~~~~~~~~~y~aPE~~  204 (206)
                      +|||+++.....  .......+|..|+|||..
T Consensus       201 ~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~  232 (355)
T 1vzo_A          201 TDFGLSKEFVADETERAYDFCGTIEYMAPDIV  232 (355)
T ss_dssp             SCSSEEEECCGGGGGGGCGGGSCCTTCCHHHH
T ss_pred             eeCCCCeecccCCCCcccCcccCcCccChhhh
Confidence            999999865432  233446789999999963

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.97  E-value=6.4e-31  Score=206.29  Aligned_cols=164  Identities=13%  Similarity=0.226  Sum_probs=143.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccC-CCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|+..+.||+|+||.||+|... +++.||+|++..   ...+.+.+|+.+++++. |+||+++++++..     +...
T Consensus        35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~-----~~~~  106 (330)
T 3nsz_A           35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP---VKKKKIKREIKILENLRGGPNIITLADIVKD-----PVSR  106 (330)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS---CCHHHHHHHHHHHHHHTTSTTBCCEEEEEEC-----TTTC
T ss_pred             CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc---cchHHHHHHHHHHHHcCCCCCEEEeeeeecc-----CCCC
Confidence            367999999999999999999975 799999999873   33567889999999997 9999999998754     2345


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC-ceeEccCCc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-VAKISSYNL  179 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~-~~kl~df~~  179 (206)
                      ..+++|||+++++|.+++..      +++..++.++.|++.||.|||+   .+++|+||||+||+++.++ .++|+|||+
T Consensus       107 ~~~lv~e~~~~~~l~~~~~~------~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~  177 (330)
T 3nsz_A          107 TPALVFEHVNNTDFKQLYQT------LTDYDIRFYMYEILKALDYCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDWGL  177 (330)
T ss_dssp             CEEEEEECCCCCCHHHHGGG------CCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTTEEEECCCTT
T ss_pred             ceEEEEeccCchhHHHHHHh------CCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEEEcCCCCEEEEEeCCC
Confidence            78999999999999998753      7788999999999999999999   7999999999999999766 899999999


Q ss_pred             cccccccccccccccCccccCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      +.............++..|+|||.
T Consensus       178 a~~~~~~~~~~~~~~~~~y~aPE~  201 (330)
T 3nsz_A          178 AEFYHPGQEYNVRVASRYFKGPEL  201 (330)
T ss_dssp             CEECCTTCCCCSCCSCGGGCCHHH
T ss_pred             ceEcCCCCccccccccccccChhh
Confidence            998776666666788999999995

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.97  E-value=8.5e-31  Score=202.42  Aligned_cols=170  Identities=21%  Similarity=0.269  Sum_probs=142.3

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      ..|.....||+|+||.||+|... ++..||+|.+........+.+.+|+.+++.++|+||+++++++..       .+..
T Consensus        22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-------~~~~   94 (295)
T 2clq_A           22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSE-------NGFI   94 (295)
T ss_dssp             CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEE-------TTEE
T ss_pred             cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEe-------CCcE
Confidence            34555568999999999999975 788999999986666666788999999999999999999998865       5679


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC-CCceeEccCCccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-NLVAKISSYNLPL  181 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~-~~~~kl~df~~a~  181 (206)
                      +++||++++++|.+++.........++..++.++.|++.||.|||+   .+++|+||+|+||+++. ++.++|+|||++.
T Consensus        95 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~  171 (295)
T 2clq_A           95 KIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHD---NQIVHRDIKGDNVLINTYSGVLKISDFGTSK  171 (295)
T ss_dssp             EEEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTCCEEECCTTTCE
T ss_pred             EEEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHh---CCEEccCCChhhEEEECCCCCEEEeeccccc
Confidence            9999999999999999875433457789999999999999999999   79999999999999997 8999999999998


Q ss_pred             ccccc-ccccccccCccccCCCC
Q 028629          182 LAENA-EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       182 ~~~~~-~~~~~~~~~~~y~aPE~  203 (206)
                      ..... .......++..|+|||.
T Consensus       172 ~~~~~~~~~~~~~~~~~y~aPE~  194 (295)
T 2clq_A          172 RLAGINPCTETFTGTLQYMAPEI  194 (295)
T ss_dssp             ESCC-----CCCCCCGGGCCHHH
T ss_pred             ccCCCCCcccccCCCccccChhh
Confidence            76543 22344678899999995

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.97  E-value=9.1e-32  Score=206.50  Aligned_cols=173  Identities=24%  Similarity=0.386  Sum_probs=145.4

Q ss_pred             HHHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        18 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ++....++|+..+.||+|+||.||+|...++..||+|.+... ....+.+.+|++++++++|+||+++++++..      
T Consensus         7 ~~~v~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~------   79 (279)
T 1qpc_A            7 EWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ------   79 (279)
T ss_dssp             TTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT-SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS------
T ss_pred             hcccCHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCC-cccHHHHHHHHHHHHhCCCcCcceEEEEEcC------
Confidence            344456789999999999999999999877889999998744 3346788999999999999999999988742      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                        +..+++||++++++|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+||
T Consensus        80 --~~~~~v~e~~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Df  153 (279)
T 1qpc_A           80 --EPIYIITEYMENGSLVDFLKTPSG-IKLTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADF  153 (279)
T ss_dssp             --SSCEEEEECCTTCBHHHHTTSHHH-HTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCC
T ss_pred             --CCcEEEEecCCCCCHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHhhEEEcCCCCEEECCC
Confidence              458899999999999999865321 258999999999999999999999   79999999999999999999999999


Q ss_pred             Ccccccccccc--ccccccCccccCCCC
Q 028629          178 NLPLLAENAEK--VGHVTPYSGSINPTN  203 (206)
Q Consensus       178 ~~a~~~~~~~~--~~~~~~~~~y~aPE~  203 (206)
                      |++........  .....++..|+|||.
T Consensus       154 g~~~~~~~~~~~~~~~~~~~~~y~aPE~  181 (279)
T 1qpc_A          154 GLARLIEDNEYTAREGAKFPIKWTAPEA  181 (279)
T ss_dssp             TTCEECSSSCEECCTTCCCCTTTSCHHH
T ss_pred             cccccccCcccccccCCCCccCccChhh
Confidence            99987754331  222345678999995

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.97  E-value=1.4e-31  Score=212.69  Aligned_cols=168  Identities=13%  Similarity=0.277  Sum_probs=144.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|+..+.||+|+||.||+|... ++..||+|.+.... ....+.+.+|+.++++++|+||+++++++..       .+
T Consensus        32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~  104 (360)
T 3eqc_A           32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-------DG  104 (360)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEE-------TT
T ss_pred             cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEE-------CC
Confidence            367999999999999999999986 79999999997653 3334678899999999999999999998876       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCC-ceeccCCccccEEecCCCceeEccCCc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP-GVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~-~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ..+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   . +++|+||||+||+++.++.++|+|||+
T Consensus       105 ~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~~i~~~l~~lh~---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~  178 (360)
T 3eqc_A          105 EISICMEHMDGGSLDQVLKKA---GRIPEQILGKVSIAVIKGLTYLRE---KHKIMHRDVKPSNILVNSRGEIKLCDFGV  178 (360)
T ss_dssp             EEEEEECCCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---HHCCCCSCCSGGGEEECTTCCEEECCCCC
T ss_pred             EEEEEEECCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---hCCEEcCCccHHHEEECCCCCEEEEECCC
Confidence            799999999999999999765   358899999999999999999998   5 899999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +....... .....++..|+|||..
T Consensus       179 ~~~~~~~~-~~~~~gt~~y~aPE~~  202 (360)
T 3eqc_A          179 SGQLIDSM-ANSFVGTRSYMSPERL  202 (360)
T ss_dssp             CHHHHHHC-----CCCCTTCCHHHH
T ss_pred             Cccccccc-ccCCCCCCCeECHHHH
Confidence            97664432 3346889999999953

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.97  E-value=9.3e-31  Score=203.17  Aligned_cols=168  Identities=16%  Similarity=0.318  Sum_probs=147.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ...|...+.||+|+||.||+|... ++..||+|.+.... ....+.+.+|+.+++.++|+||+++++++..       ..
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~   93 (303)
T 3a7i_A           21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK-------DT   93 (303)
T ss_dssp             GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEE-------TT
T ss_pred             HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec-------CC
Confidence            467999999999999999999975 78999999997554 3446788999999999999999999998875       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..+++|||+++++|.+++..    ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++
T Consensus        94 ~~~lv~e~~~~~~L~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~  166 (303)
T 3a7i_A           94 KLWIIMEYLGGGSALDLLEP----GPLDETQIATILREILKGLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVA  166 (303)
T ss_dssp             EEEEEEECCTTEEHHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             eEEEEEEeCCCCcHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCChheEEECCCCCEEEeecccc
Confidence            79999999999999999865    358999999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccc-cccccccCccccCCCCC
Q 028629          181 LLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ....... ......++..|+|||..
T Consensus       167 ~~~~~~~~~~~~~~~~~~y~aPE~~  191 (303)
T 3a7i_A          167 GQLTDTQIKRNTFVGTPFWMAPEVI  191 (303)
T ss_dssp             EECBTTBCCBCCCCSCGGGCCHHHH
T ss_pred             eecCccccccCccCCCcCccCHHHH
Confidence            8765432 33446788999999963

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.97  E-value=4.7e-31  Score=205.96  Aligned_cols=176  Identities=16%  Similarity=0.173  Sum_probs=145.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      .++|+..+.||+|+||.||++... +++.||+|.+........+.+.+|+.+++.++|+||+++++++...   ......
T Consensus        28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~~~~~  104 (317)
T 2buj_A           28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRE---RGAKHE  104 (317)
T ss_dssp             TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEE---ETTEEE
T ss_pred             CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEec---cCCCce
Confidence            478999999999999999999975 7999999999766555667889999999999999999999988631   112457


Q ss_pred             EEEEEeecCCCCHHHHHhcC-CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          102 IFLIFEYVPNGTLRSWISEG-HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      .++++||+++++|.+++... .....+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++
T Consensus       105 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~dfg~~  181 (317)
T 2buj_A          105 AWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA---KGYAHRDLKPTNILLGDEGQPVLMDLGSM  181 (317)
T ss_dssp             EEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCSSC
T ss_pred             eEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEcCCCCEEEEecCcc
Confidence            89999999999999988752 111568999999999999999999999   79999999999999999999999999998


Q ss_pred             ccccccc----------cccccccCccccCCCCC
Q 028629          181 LLAENAE----------KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~----------~~~~~~~~~~y~aPE~~  204 (206)
                      .......          ......++..|+|||..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  215 (317)
T 2buj_A          182 NQACIHVEGSRQALTLQDWAAQRCTISYRAPELF  215 (317)
T ss_dssp             EESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGS
T ss_pred             hhcccccccccccccccccccccCCcccCCHhHh
Confidence            7653221          11224568899999964

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.97  E-value=3.5e-31  Score=209.21  Aligned_cols=166  Identities=14%  Similarity=0.262  Sum_probs=138.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCC--ccHHHHHHHHHHHhccCC--CceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRH--CHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h--~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|+..+.||+|+||.||++...++..||+|.+.....  ...+.+.+|+.+++++.|  +||+++++++..       
T Consensus         8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~-------   80 (343)
T 3dbq_A            8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT-------   80 (343)
T ss_dssp             SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-------
T ss_pred             cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEee-------
Confidence            467999999999999999999987899999999975532  234678899999999976  999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ....+++|| +.+++|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+|||++ ++.+||+|||
T Consensus        81 ~~~~~lv~e-~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~al~~lH~---~~iiHrDikp~NIll~-~~~~kl~DFG  152 (343)
T 3dbq_A           81 DQYIYMVME-CGNIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIV-DGMLKLIDFG  152 (343)
T ss_dssp             SSEEEEEEC-CCSEEHHHHHHHS---CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEE-TTEEEECCCS
T ss_pred             CCEEEEEEe-CCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCcceEEEE-CCcEEEeecc
Confidence            668999999 5577999999876   458999999999999999999999   7999999999999997 6789999999


Q ss_pred             ccccccccc---cccccccCccccCCCC
Q 028629          179 LPLLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       179 ~a~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                      ++.......   ......+|++|+|||.
T Consensus       153 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~  180 (343)
T 3dbq_A          153 IANQMQPDTTSVVKDSQVGTVNYMPPEA  180 (343)
T ss_dssp             SSCCC------------CCCCSSCCHHH
T ss_pred             cccccCcccccccCCCCcCCcCcCCHHH
Confidence            998765433   2334679999999996

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=1.8e-31  Score=211.15  Aligned_cols=172  Identities=22%  Similarity=0.358  Sum_probs=138.3

Q ss_pred             HHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc-----cHHHHHHHHHHHhccCCCceeeecccccccc
Q 028629           20 EEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH-----STRNFMHHIELISKLRHCHLVSALGHCFECY   93 (206)
Q Consensus        20 ~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   93 (206)
                      ....++|...+.||+|+||.||+|... +|+.||+|.+......     ..+.+.+|+.+++.++|+||+++++++..  
T Consensus         6 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~--   83 (346)
T 1ua2_A            6 KSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGH--   83 (346)
T ss_dssp             -------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECC--
T ss_pred             HHHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEee--
Confidence            345688999999999999999999976 7999999999753221     23467889999999999999999998864  


Q ss_pred             ccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCcee
Q 028629           94 FDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAK  173 (206)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~k  173 (206)
                           .+..+++|||+++ +|.+.+....  ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.+|
T Consensus        84 -----~~~~~lv~e~~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~k  152 (346)
T 1ua2_A           84 -----KSNISLVFDFMET-DLEVIIKDNS--LVLTPSHIKAYMLMTLQGLEYLHQ---HWILHRDLKPNNLLLDENGVLK  152 (346)
T ss_dssp             -----TTCCEEEEECCSE-EHHHHHTTCC--SSCCSSHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEE
T ss_pred             -----CCceEEEEEcCCC-CHHHHHHhcC--cCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCHHHEEEcCCCCEE
Confidence                 5678999999986 8888887643  458888999999999999999999   7999999999999999999999


Q ss_pred             EccCCcccccccc-ccccccccCccccCCCCC
Q 028629          174 ISSYNLPLLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       174 l~df~~a~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      |+|||++...... .......+|..|+|||..
T Consensus       153 l~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~  184 (346)
T 1ua2_A          153 LADFGLAKSFGSPNRAYTHQVVTRWYRAPELL  184 (346)
T ss_dssp             ECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHH
T ss_pred             EEecccceeccCCcccCCcccccccccCchHh
Confidence            9999999876543 333446789999999953

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.97  E-value=4.1e-31  Score=207.37  Aligned_cols=171  Identities=20%  Similarity=0.389  Sum_probs=144.3

Q ss_pred             hcCCcccceeccCcceeEEEEEE-----eCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRL-----KNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~-----~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .++|+..+.||+|+||.||+|..     .++..||+|.+........+.+.+|+.++++++|+||+++++++..     .
T Consensus        40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~  114 (326)
T 2w1i_A           40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYS-----A  114 (326)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC------
T ss_pred             HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEe-----c
Confidence            35689999999999999999984     2688999999986666666789999999999999999999998754     2


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      .....+++||++++++|.+++....  ..+++..++.++.|++.||.+||+   .+++|+||+|+||++++++.++|+||
T Consensus       115 ~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dikp~NIli~~~~~~kL~Df  189 (326)
T 2w1i_A          115 GRRNLKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDF  189 (326)
T ss_dssp             ---CCEEEECCCTTCBHHHHHHHST--TSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECCC
T ss_pred             CCCceEEEEECCCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHh---CCEeccCCCcceEEEcCCCcEEEecC
Confidence            2346899999999999999998753  358899999999999999999999   79999999999999999999999999


Q ss_pred             Ccccccccccc----ccccccCccccCCCC
Q 028629          178 NLPLLAENAEK----VGHVTPYSGSINPTN  203 (206)
Q Consensus       178 ~~a~~~~~~~~----~~~~~~~~~y~aPE~  203 (206)
                      |++........    .....++..|+|||.
T Consensus       190 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  219 (326)
T 2w1i_A          190 GLTKVLPQDKEYYKVKEPGESPIFWYAPES  219 (326)
T ss_dssp             TTCEECCSSCSEEECSSCCSCCGGGCCHHH
T ss_pred             cchhhccccccccccccCCCCceeEECchh
Confidence            99987755432    222455667999995

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.97  E-value=8.3e-31  Score=202.29  Aligned_cols=171  Identities=20%  Similarity=0.260  Sum_probs=144.2

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      +.|...+.||+|+||.||+|... ++..||+|.+....  ....+.+.+|+.++++++|+||+++++++....   ....
T Consensus        26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~---~~~~  102 (290)
T 1t4h_A           26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTV---KGKK  102 (290)
T ss_dssp             CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEES---SSCE
T ss_pred             eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecccc---CCCc
Confidence            45788889999999999999976 78899999987543  334467889999999999999999999875421   2245


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCc--eeccCCccccEEec-CCCceeEccC
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG--VFSNNLKITDILLD-QNLVAKISSY  177 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~--i~h~dl~p~nil~~-~~~~~kl~df  177 (206)
                      .++++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+  ++|+||+|+||+++ +++.++|+||
T Consensus       103 ~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~~~i~H~dikp~Nil~~~~~~~~kl~Df  176 (290)
T 1t4h_A          103 CIVLVTELMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQFLHT---RTPPIIHRDLKCDNIFITGPTGSVKIGDL  176 (290)
T ss_dssp             EEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHT---SSSCCCCSCCCGGGEEESSTTSCEEECCT
T ss_pred             eEEEEEEecCCCCHHHHHHHc---cCCCHHHHHHHHHHHHHHHHHHHc---CCCCEEECCCCHHHEEEECCCCCEEEeeC
Confidence            689999999999999999865   458899999999999999999999   67  99999999999998 7899999999


Q ss_pred             CccccccccccccccccCccccCCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |++....... .....++..|+|||..
T Consensus       177 g~~~~~~~~~-~~~~~~t~~y~aPE~~  202 (290)
T 1t4h_A          177 GLATLKRASF-AKAVIGTPEFMAPEMY  202 (290)
T ss_dssp             TGGGGCCTTS-BEESCSSCCCCCGGGG
T ss_pred             CCcccccccc-cccccCCcCcCCHHHH
Confidence            9997665433 3346789999999964

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=3e-31  Score=211.47  Aligned_cols=170  Identities=14%  Similarity=0.217  Sum_probs=137.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|+..+.||+|+||.||+|... +|+.||+|.+....  ....+.+.+|+.+++.++|+||+++++++...... ...
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~-~~~  102 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETL-DDF  102 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSST-TTC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCcc-ccC
Confidence            578999999999999999999975 79999999986432  23346788999999999999999999988642111 112


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...+++||++ +++|.+++...    .+++..+..++.|++.||.|||+   .+++||||||+||++++++.+||+|||+
T Consensus       103 ~~~~lv~e~~-~~~L~~~~~~~----~l~~~~~~~~~~qi~~~L~~LH~---~~ivH~Dlkp~NIll~~~~~~kl~Dfg~  174 (367)
T 1cm8_A          103 TDFYLVMPFM-GTDLGKLMKHE----KLGEDRIQFLVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELKILDFGL  174 (367)
T ss_dssp             CCCEEEEECC-SEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             ceEEEEEecC-CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHH---CCccccCcCHHHEEEcCCCCEEEEeeec
Confidence            4579999999 77999998763    48899999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      ++.....  .....+|.+|+|||.
T Consensus       175 a~~~~~~--~~~~~~t~~y~aPE~  196 (367)
T 1cm8_A          175 ARQADSE--MTGYVVTRWYRAPEV  196 (367)
T ss_dssp             CEECCSS--CCSSCSCGGGCCTHH
T ss_pred             ccccccc--cCcCcCCCCcCCHHH
Confidence            9876543  233678999999995

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.97  E-value=5.3e-31  Score=205.34  Aligned_cols=171  Identities=11%  Similarity=0.202  Sum_probs=139.1

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC---ccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      ...++|+..+.||+|+||.||+|... +++.||+|.+.....   ...+.+.+|+.++++++|+||+++++++..     
T Consensus        31 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~-----  105 (309)
T 2h34_A           31 TQFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEI-----  105 (309)
T ss_dssp             ---CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-----
T ss_pred             cEeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEee-----
Confidence            34588999999999999999999976 789999999975432   223678899999999999999999998865     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                        .+..++++|++++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|
T Consensus       106 --~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~NIl~~~~~~~kl~D  177 (309)
T 2h34_A          106 --DGQLYVDMRLINGVDLAAMLRRQ---GPLAPPRAVAIVRQIGSALDAAHA---AGATHRDVKPENILVSADDFAYLVD  177 (309)
T ss_dssp             --TTEEEEEEECCCCEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECS
T ss_pred             --CCeEEEEEEecCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CcCCcCCCChHHEEEcCCCCEEEec
Confidence              56899999999999999999865   358999999999999999999999   7999999999999999999999999


Q ss_pred             CCccccccccc--cccccccCccccCCCCC
Q 028629          177 YNLPLLAENAE--KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~~--~~~~~~~~~~y~aPE~~  204 (206)
                      ||++.......  ......++..|+|||..
T Consensus       178 fg~~~~~~~~~~~~~~~~~~~~~y~aPE~~  207 (309)
T 2h34_A          178 FGIASATTDEKLTQLGNTVGTLYYMAPERF  207 (309)
T ss_dssp             CCC----------------CCGGGCCGGGT
T ss_pred             CccCccccccccccccccCCCcCccCHHHH
Confidence            99998765432  23345788999999965

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.97  E-value=1.3e-31  Score=213.52  Aligned_cols=171  Identities=22%  Similarity=0.331  Sum_probs=141.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      .++|+..+.||+|+||.||+|.+.      ++..||+|.+.... ......+.+|+.++++++|+||+++++++..    
T Consensus        70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~----  145 (367)
T 3l9p_A           70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQ----  145 (367)
T ss_dssp             GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred             HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEec----
Confidence            467899999999999999999943      46789999996442 3334578889999999999999999998865    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCC----CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC-
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGH----AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-  170 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~-  170 (206)
                         ....+++|||+++++|.+++....    ....+++..++.++.|++.||.|||+   .+|+||||||+|||++.++ 
T Consensus       146 ---~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~  219 (367)
T 3l9p_A          146 ---SLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEE---NHFIHRDIAARNCLLTCPGP  219 (367)
T ss_dssp             ---SSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSST
T ss_pred             ---CCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChhhEEEecCCC
Confidence               566899999999999999997532    11358899999999999999999999   7999999999999999544 


Q ss_pred             --ceeEccCCcccccccc---ccccccccCccccCCCC
Q 028629          171 --VAKISSYNLPLLAENA---EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       171 --~~kl~df~~a~~~~~~---~~~~~~~~~~~y~aPE~  203 (206)
                        .+||+|||+++.....   .......++..|+|||.
T Consensus       220 ~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~  257 (367)
T 3l9p_A          220 GRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEA  257 (367)
T ss_dssp             TCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHH
T ss_pred             CceEEECCCccccccccccccccCCCcCCcccEECHHH
Confidence              5999999999865332   23334567889999995

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.97  E-value=6.9e-32  Score=211.13  Aligned_cols=182  Identities=20%  Similarity=0.324  Sum_probs=150.1

Q ss_pred             ceeCHHHHHHHhcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceee
Q 028629           12 RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVS   84 (206)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~   84 (206)
                      ..+...++....++|...+.||+|+||.||+|...      ++..||+|.+..... .....+.+|+.+++++.|+||++
T Consensus        13 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~   92 (322)
T 1p4o_A           13 DVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR   92 (322)
T ss_dssp             SCCCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCC
T ss_pred             cccChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEee
Confidence            44556677777889999999999999999999854      367899999975432 23456889999999999999999


Q ss_pred             eccccccccccCCCCceEEEEEeecCCCCHHHHHhcCC-------CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceecc
Q 028629           85 ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGH-------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSN  157 (206)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~-------~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~  157 (206)
                      +++++..       .+..+++||++++++|.+++....       ....+++..++.++.|++.||.|||+   .+++|+
T Consensus        93 ~~~~~~~-------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~  162 (322)
T 1p4o_A           93 LLGVVSQ-------GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHR  162 (322)
T ss_dssp             EEEEECS-------SSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCS
T ss_pred             eEEEEcc-------CCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHH---CCCccC
Confidence            9998865       567899999999999999986521       11346899999999999999999999   799999


Q ss_pred             CCccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCC
Q 028629          158 NLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       158 dl~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                      ||||+||++++++.++|+|||++.......   ......++..|+|||.
T Consensus       163 dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  211 (322)
T 1p4o_A          163 DLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPES  211 (322)
T ss_dssp             CCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHH
T ss_pred             CCccceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccChhh
Confidence            999999999999999999999998664432   2223456778999995

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.97  E-value=4.6e-31  Score=203.14  Aligned_cols=167  Identities=20%  Similarity=0.331  Sum_probs=145.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|...+.||+|++|.||+|... ++..||+|.+....   ......+.+|+++++.++|+||+++++++..       
T Consensus        13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------   85 (284)
T 2vgo_A           13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHD-------   85 (284)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-------
T ss_pred             hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEc-------
Confidence            468999999999999999999976 68899999986432   3334678899999999999999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+..+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||
T Consensus        86 ~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~Dfg  159 (284)
T 2vgo_A           86 RKRIYLMLEFAPRGELYKELQKH---GRFDEQRSATFMEELADALHYCHE---RKVIHRDIKPENLLMGYKGELKIADFG  159 (284)
T ss_dssp             SSEEEEEECCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGGGEEECTTCCEEECCCT
T ss_pred             CCEEEEEEEeCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEEEcCCCCEEEeccc
Confidence            56899999999999999998765   358899999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccccccccccCccccCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      ++....... .....++..|+|||.
T Consensus       160 ~~~~~~~~~-~~~~~~~~~y~aPE~  183 (284)
T 2vgo_A          160 WSVHAPSLR-RRTMCGTLDYLPPEM  183 (284)
T ss_dssp             TCEECSSSC-BCCCCSCGGGCCHHH
T ss_pred             ccccCcccc-cccccCCCCcCCHHH
Confidence            997665432 344678999999995

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.97  E-value=4.5e-31  Score=207.56  Aligned_cols=169  Identities=23%  Similarity=0.361  Sum_probs=140.0

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc--cHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH--STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ..++|+..+.||+|+||.||+|... +++.||+|.+......  ..+.+.+|+.++++++|+||+++++++..       
T Consensus        23 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------   95 (331)
T 4aaa_A           23 SMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKK-------   95 (331)
T ss_dssp             CGGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-------
T ss_pred             hhhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeec-------
Confidence            3578999999999999999999986 6999999998654322  24557889999999999999999999865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+..+++|||+++++|.++....   ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||
T Consensus        96 ~~~~~lv~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nil~~~~~~~kl~Dfg  169 (331)
T 4aaa_A           96 KKRWYLVFEFVDHTILDDLELFP---NGLDYQVVQKYLFQIINGIGFCHS---HNIIHRDIKPENILVSQSGVVKLCDFG  169 (331)
T ss_dssp             TTEEEEEEECCSEEHHHHHHHST---TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCT
T ss_pred             CCEEEEEEecCCcchHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHH---CCEEccCcChheEEEcCCCcEEEEeCC
Confidence            66899999999998888877654   458999999999999999999999   799999999999999999999999999


Q ss_pred             cccccccc-ccccccccCccccCCCC
Q 028629          179 LPLLAENA-EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       179 ~a~~~~~~-~~~~~~~~~~~y~aPE~  203 (206)
                      ++...... .......++.+|+|||.
T Consensus       170 ~~~~~~~~~~~~~~~~~t~~y~aPE~  195 (331)
T 4aaa_A          170 FARTLAAPGEVYDDEVATRWYRAPEL  195 (331)
T ss_dssp             TC------------CCCCCTTCCHHH
T ss_pred             CceeecCCccccCCCcCCccccCccc
Confidence            99876543 33344678899999995

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=4.2e-31  Score=211.67  Aligned_cols=176  Identities=15%  Similarity=0.204  Sum_probs=140.2

Q ss_pred             HHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeecccccccccc---
Q 028629           20 EEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD---   95 (206)
Q Consensus        20 ~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~---   95 (206)
                      ....++|+..+.||+|+||.||+|... +++.||+|.+.......    .+|+.+++.++|+||+++++++......   
T Consensus         3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~~----~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~   78 (383)
T 3eb0_A            3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRYK----NRELDIMKVLDHVNIIKLVDYFYTTGDEEPK   78 (383)
T ss_dssp             ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTSC----CHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred             ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcchH----HHHHHHHHHcCCCCccchhheeeecCccccc
Confidence            345789999999999999999999975 79999999987543222    3599999999999999999988542110   


Q ss_pred             ----------------------------CCCCceEEEEEeecCCCCHHHHHhcC-CCCcccCHHHHHHHHHHHHHHHHHH
Q 028629           96 ----------------------------DSSVSRIFLIFEYVPNGTLRSWISEG-HAWQSLTWTQRISAAIGVARGIQFL  146 (206)
Q Consensus        96 ----------------------------~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~l  146 (206)
                                                  ......++++|||+++ +|.+.+... .....+++..++.++.|++.||.||
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~L  157 (383)
T 3eb0_A           79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPD-TLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFI  157 (383)
T ss_dssp             -------------------------------CCEEEEEECCCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccCCCceEEEEEEecCCc-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence                                        0234568999999985 777766531 1114689999999999999999999


Q ss_pred             hcCCCCceeccCCccccEEec-CCCceeEccCCccccccccccccccccCccccCCCC
Q 028629          147 HTGIVPGVFSNNLKITDILLD-QNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       147 H~~~~~~i~h~dl~p~nil~~-~~~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      |+   .+|+||||||+||+++ +++.+||+|||+++............++..|+|||.
T Consensus       158 H~---~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~  212 (383)
T 3eb0_A          158 HS---LGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPEL  212 (383)
T ss_dssp             HT---TTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCHHH
T ss_pred             HH---CcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCcCcccCCCccCHHH
Confidence            99   7999999999999998 688999999999998766666666788999999995

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.97  E-value=3.8e-31  Score=203.33  Aligned_cols=170  Identities=19%  Similarity=0.262  Sum_probs=143.9

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhcc-CCCceeeeccccccccccCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ..++|+..+.||+|+||.||+|... ++..||+|.+....  ......+.+|+..+..+ +||||+++++++.+      
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~------   82 (289)
T 1x8b_A            9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAE------   82 (289)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEE------
T ss_pred             ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeec------
Confidence            3577999999999999999999986 79999999997543  33456788899999999 89999999998865      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCC-CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC-------
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHA-WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN-------  169 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~-------  169 (206)
                       .+..+++|||+++++|.+++..... ...+++..++.++.|++.||.|||+   .+++|+||||+||+++.+       
T Consensus        83 -~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dikp~NIl~~~~~~~~~~~  158 (289)
T 1x8b_A           83 -DDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHS---MSLVHMDIKPSNIFISRTSIPNAAS  158 (289)
T ss_dssp             -TTEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEC---------
T ss_pred             -CCeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHh---CCEeecCCCHHHEEEcCCCCCcccc
Confidence             5689999999999999999875311 1348999999999999999999999   799999999999999843       


Q ss_pred             ------------CceeEccCCccccccccccccccccCccccCCCCC
Q 028629          170 ------------LVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       170 ------------~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                                  ..++|+|||.+.......   ...++..|+|||..
T Consensus       159 ~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~---~~~gt~~y~aPE~~  202 (289)
T 1x8b_A          159 EEGDEDDWASNKVMFKIGDLGHVTRISSPQ---VEEGDSRFLANEVL  202 (289)
T ss_dssp             -----------CCCEEECCCTTCEETTCSC---CCCCCGGGCCHHHH
T ss_pred             cccccccccCCceEEEEcccccccccCCcc---ccCCCccccChhHh
Confidence                        479999999998776533   24689999999953

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.97  E-value=6.7e-31  Score=207.62  Aligned_cols=166  Identities=15%  Similarity=0.228  Sum_probs=141.0

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ...++|...+.||+|+||.||+|... +++.||+|.+......    ..+|++++.++ +||||+++++++.+       
T Consensus        19 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~----~~~E~~~l~~~~~hp~iv~~~~~~~~-------   87 (342)
T 2qr7_A           19 QFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRD----PTEEIEILLRYGQHPNIITLKDVYDD-------   87 (342)
T ss_dssp             CHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCC----CHHHHHHHHHHTTSTTBCCEEEEEEC-------
T ss_pred             CccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCC----hHHHHHHHHHhcCCCCcCeEEEEEEc-------
Confidence            34578999999999999999999986 7899999999755432    34578888888 79999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC----CceeE
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN----LVAKI  174 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~----~~~kl  174 (206)
                      ....+++|||+++++|.+.+...   ..+++..+..++.|++.||.|||+   .+|+||||||+||++.++    +.+||
T Consensus        88 ~~~~~lv~E~~~gg~L~~~i~~~---~~~~~~~~~~~~~qi~~al~~lH~---~givHrDlkp~NIl~~~~~~~~~~~kl  161 (342)
T 2qr7_A           88 GKYVYVVTELMKGGELLDKILRQ---KFFSEREASAVLFTITKTVEYLHA---QGVVHRDLKPSNILYVDESGNPESIRI  161 (342)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHTC---TTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESSSSCSGGGEEE
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcEeccCCHHHEEEecCCCCcCeEEE
Confidence            67899999999999999998765   458999999999999999999999   799999999999998543    35999


Q ss_pred             ccCCcccccccc-ccccccccCccccCCCC
Q 028629          175 SSYNLPLLAENA-EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       175 ~df~~a~~~~~~-~~~~~~~~~~~y~aPE~  203 (206)
                      +|||++...... .......+|..|+|||.
T Consensus       162 ~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~  191 (342)
T 2qr7_A          162 CDFGFAKQLRAENGLLMTPCYTANFVAPEV  191 (342)
T ss_dssp             CCCTTCEECBCTTCCBCCSSCCSSCCCHHH
T ss_pred             EECCCcccCcCCCCceeccCCCccccCHHH
Confidence            999999876543 33445678999999995

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.97  E-value=5.7e-31  Score=206.55  Aligned_cols=171  Identities=27%  Similarity=0.430  Sum_probs=141.2

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEE--EEEEeecCC-CccHHHHHHHHHHHhcc-CCCceeeeccccccccccCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFI--AIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~v--aiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .++|...+.||+|+||.||+|... ++..+  ++|.+.... ....+.+.+|+++++++ +||||+++++++..      
T Consensus        24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~------   97 (327)
T 1fvr_A           24 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH------   97 (327)
T ss_dssp             GGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEE------
T ss_pred             HHHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeee------
Confidence            478999999999999999999976 66654  899887432 33456788999999999 89999999999865      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCC-------------CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccE
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGH-------------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDI  164 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~-------------~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~ni  164 (206)
                       .+..+++|||+++++|.+++....             ....+++..++.++.|++.||.|||+   .+++|+||+|+||
T Consensus        98 -~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NI  173 (327)
T 1fvr_A           98 -RGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNI  173 (327)
T ss_dssp             -TTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGE
T ss_pred             -CCceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCccceE
Confidence             568999999999999999997642             11368999999999999999999999   7999999999999


Q ss_pred             EecCCCceeEccCCccccccccccccccccCccccCCCC
Q 028629          165 LLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       165 l~~~~~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      +++.++.++|+|||++.............++..|+|||.
T Consensus       174 l~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~  212 (327)
T 1fvr_A          174 LVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIES  212 (327)
T ss_dssp             EECGGGCEEECCTTCEESSCEECCC----CCTTTCCHHH
T ss_pred             EEcCCCeEEEcccCcCccccccccccCCCCCccccChhh
Confidence            999999999999999986555444455567788999995

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.97  E-value=1.9e-31  Score=208.93  Aligned_cols=187  Identities=18%  Similarity=0.339  Sum_probs=146.4

Q ss_pred             ceeCHHHHHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhcc-CCCceeeecccc
Q 028629           12 RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHC   89 (206)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~   89 (206)
                      ..+++.++....++|+..+.||+|+||.||+|... +++.||+|++.... .....+.+|+.+++++ +|+||+++++++
T Consensus        12 ~~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~   90 (326)
T 2x7f_A           12 DEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAF   90 (326)
T ss_dssp             ----CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEE
T ss_pred             hhccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEE
Confidence            34445555566789999999999999999999975 79999999997543 3456788999999999 799999999988


Q ss_pred             ccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC
Q 028629           90 FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN  169 (206)
Q Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~  169 (206)
                      ...... ......+++|||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++++
T Consensus        91 ~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~  165 (326)
T 2x7f_A           91 IKKNPP-GMDDQLWLVMEFCGAGSVTDLIKNTKG-NTLKEEWIAYICREILRGLSHLHQ---HKVIHRDIKGQNVLLTEN  165 (326)
T ss_dssp             EECC---CCCCEEEEEEECCTTEEHHHHHHHSGG-GCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTT
T ss_pred             eeccCc-cccceEEEEEEcCCCCcHHHHHHhccc-CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCcHHHEEEcCC
Confidence            652211 114578999999999999999976532 468899999999999999999999   799999999999999999


Q ss_pred             CceeEccCCcccccccc-ccccccccCccccCCCCC
Q 028629          170 LVAKISSYNLPLLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       170 ~~~kl~df~~a~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      +.++|+|||++...... .......++..|+|||..
T Consensus       166 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  201 (326)
T 2x7f_A          166 AEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVI  201 (326)
T ss_dssp             CCEEECCCTTTC-------------CCGGGCCHHHH
T ss_pred             CCEEEeeCcCceecCcCccccccccCCccccChhhh
Confidence            99999999999876543 233445789999999963

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.97  E-value=2.2e-31  Score=208.45  Aligned_cols=168  Identities=17%  Similarity=0.256  Sum_probs=141.7

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC--------ccHHHHHHHHHHHhccCCCceeeeccccccc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--------HSTRNFMHHIELISKLRHCHLVSALGHCFEC   92 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~--------~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   92 (206)
                      ..++|...+.||+|+||.||+|... +++.||+|.+.....        .....+.+|++++++++|+||+++++++.. 
T Consensus         8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-   86 (322)
T 2ycf_A            8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA-   86 (322)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEES-
T ss_pred             hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcC-
Confidence            3567999999999999999999976 689999999865421        122357889999999999999999998743 


Q ss_pred             cccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC--
Q 028629           93 YFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL--  170 (206)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~--  170 (206)
                             ...+++|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++  
T Consensus        87 -------~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~  153 (322)
T 2ycf_A           87 -------EDYYIVLELMEGGELFDKVVGN---KRLKEATCKLYFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEED  153 (322)
T ss_dssp             -------SSEEEEEECCTTEETHHHHSTT---CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSSS
T ss_pred             -------CceEEEEecCCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEEEecCCCC
Confidence                   3489999999999999988765   458999999999999999999999   7999999999999998765  


Q ss_pred             -ceeEccCCccccccccccccccccCccccCCCC
Q 028629          171 -VAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       171 -~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                       .++|+|||++.............++..|+|||.
T Consensus       154 ~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~  187 (322)
T 2ycf_A          154 CLIKITDFGHSKILGETSLMRTLCGTPTYLAPEV  187 (322)
T ss_dssp             CCEEECCCTTCEECCCCHHHHHHHSCCTTCCHHH
T ss_pred             CeEEEccCccceecccccccccccCCcCccCchh
Confidence             499999999998776555555788999999995

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.97  E-value=2.5e-31  Score=208.73  Aligned_cols=177  Identities=19%  Similarity=0.237  Sum_probs=145.1

Q ss_pred             HHHHHHhcCCccc-ceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccC-CCceeeecccccc
Q 028629           17 EELEEATNNFDTS-AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLR-HCHLVSALGHCFE   91 (206)
Q Consensus        17 ~~~~~~~~~~~~~-~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~   91 (206)
                      .......++|... +.||+|+||.||+|... +++.||+|.+....  ......+.+|+.+++.+. |+||+++++++..
T Consensus        21 ~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~  100 (327)
T 3lm5_A           21 QSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYEN  100 (327)
T ss_dssp             BCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEEC
T ss_pred             HHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEe
Confidence            3445567778887 89999999999999976 79999999997543  334567889999999995 6999999998865


Q ss_pred             ccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC---
Q 028629           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---  168 (206)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~---  168 (206)
                             ....+++|||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.   
T Consensus       101 -------~~~~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~i~~ql~~~L~~LH~---~givH~Dikp~NIl~~~~~~  169 (327)
T 3lm5_A          101 -------TSEIILILEYAAGGEIFSLCLPELA-EMVSENDVIRLIKQILEGVYYLHQ---NNIVHLDLKPQNILLSSIYP  169 (327)
T ss_dssp             -------SSEEEEEEECCTTEEGGGGGSSCC--CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEESCBTT
T ss_pred             -------CCeEEEEEEecCCCcHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHH---CCeecCcCChHHEEEecCCC
Confidence                   6679999999999999998865422 568999999999999999999999   79999999999999997   


Q ss_pred             CCceeEccCCccccccccccccccccCccccCCCCC
Q 028629          169 NLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       169 ~~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ++.++|+|||++.............+++.|+|||..
T Consensus       170 ~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~  205 (327)
T 3lm5_A          170 LGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEIL  205 (327)
T ss_dssp             BCCEEECCGGGCEEC---------CCCGGGCCHHHH
T ss_pred             CCcEEEeeCccccccCCccccccccCCcCccCCeee
Confidence            789999999999988766655667899999999953

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.97  E-value=3.2e-31  Score=207.33  Aligned_cols=170  Identities=21%  Similarity=0.386  Sum_probs=142.8

Q ss_pred             HhcCC-cccceeccCcceeEEEEEEe-----CCcEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeeccccccccc
Q 028629           22 ATNNF-DTSAFMGEGSKGQMYRGRLK-----NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (206)
Q Consensus        22 ~~~~~-~~~~~lg~g~~g~v~~~~~~-----~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   94 (206)
                      ..++| +..+.||+|+||.||++.+.     +++.||+|++..... ...+.+.+|+.++++++|+||+++++++..   
T Consensus        28 ~~~r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---  104 (318)
T 3lxp_A           28 FHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCED---  104 (318)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE---
T ss_pred             ecHHHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEec---
Confidence            34556 99999999999999998742     588999999975532 335678899999999999999999998865   


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeE
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI  174 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl  174 (206)
                        .....++++|||+++++|.+++...    .+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|
T Consensus       105 --~~~~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~i~~~l~~~l~~LH~---~~ivH~Dikp~Nil~~~~~~~kl  175 (318)
T 3lxp_A          105 --AGAASLQLVMEYVPLGSLRDYLPRH----SIGLAQLLLFAQQICEGMAYLHA---QHYIHRDLAARNVLLDNDRLVKI  175 (318)
T ss_dssp             --TTTTEEEEEECCCTTCBHHHHGGGS----CCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEE
T ss_pred             --CCCceEEEEEecccCCcHHHHHhhC----CCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCchheEEEcCCCCEEE
Confidence              2246789999999999999999764    38899999999999999999999   79999999999999999999999


Q ss_pred             ccCCccccccccc----cccccccCccccCCCC
Q 028629          175 SSYNLPLLAENAE----KVGHVTPYSGSINPTN  203 (206)
Q Consensus       175 ~df~~a~~~~~~~----~~~~~~~~~~y~aPE~  203 (206)
                      +|||++.......    ......++..|+|||.
T Consensus       176 ~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~  208 (318)
T 3lxp_A          176 GDFGLAKAVPEGHEYYRVREDGDSPVFWYAPEC  208 (318)
T ss_dssp             CCGGGCEECCTTCSEEEC---CCCCGGGCCHHH
T ss_pred             CCccccccccccccccccccCCCCCceeeChHH
Confidence            9999998775542    2333456778999995

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.97  E-value=5e-31  Score=210.46  Aligned_cols=172  Identities=15%  Similarity=0.181  Sum_probs=133.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|...+.||+|+||.||+|... +++.||+|.+....  ....+.+.+|+.+++.++|+||+++++++...... ...
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~-~~~  102 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSL-EEF  102 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCST-TTC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccc-ccc
Confidence            578999999999999999999976 78999999997543  23345788999999999999999999988642111 112


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...+++|||+++ +|.+.+..     .+++..+..++.|++.||.|||+   .+++|+||||+||+++.++.+||+|||+
T Consensus       103 ~~~~lv~e~~~~-~l~~~~~~-----~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~  173 (371)
T 2xrw_A          103 QDVYIVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGL  173 (371)
T ss_dssp             CEEEEEEECCSE-EHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCCCC
T ss_pred             cceEEEEEcCCC-CHHHHHhh-----ccCHHHHHHHHHHHHHHHHHHHH---CCeecccCCHHHEEEcCCCCEEEEEeec
Confidence            478999999975 78888763     37899999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +.............++..|+|||..
T Consensus       174 a~~~~~~~~~~~~~gt~~y~aPE~~  198 (371)
T 2xrw_A          174 ARTAGTSFMMTPYVVTRYYRAPEVI  198 (371)
T ss_dssp             ----------------CTTCCHHHH
T ss_pred             ccccccccccCCceecCCccCHHHh
Confidence            9887665545557889999999953

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.97  E-value=7.8e-31  Score=207.67  Aligned_cols=175  Identities=16%  Similarity=0.312  Sum_probs=142.7

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeecccccccccc-CCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD-DSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~-~~~   98 (206)
                      .++|+..+.||+|+||.||+|... +++.||+|++....  ......+.+|+.+++.++|+||+++++++...... ...
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   95 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   95 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence            578999999999999999999985 79999999986543  23345778899999999999999999988652211 112


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+..+++|||+++ ++.+.+....  ..+++..++.++.|++.||.|||+   .+|+|+||||+||++++++.++|+|||
T Consensus        96 ~~~~~lv~e~~~~-~l~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg  169 (351)
T 3mi9_A           96 KGSIYLVFDFCEH-DLAGLLSNVL--VKFTLSEIKRVMQMLLNGLYYIHR---NKILHRDMKAANVLITRDGVLKLADFG  169 (351)
T ss_dssp             -CEEEEEEECCSE-EHHHHHHCTT--SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             CceEEEEEeccCC-CHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCHHHEEEcCCCCEEEccch
Confidence            4578999999976 7777776543  358999999999999999999999   799999999999999999999999999


Q ss_pred             cccccccc-----ccccccccCccccCCCC
Q 028629          179 LPLLAENA-----EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       179 ~a~~~~~~-----~~~~~~~~~~~y~aPE~  203 (206)
                      ++......     .......++.+|+|||.
T Consensus       170 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~  199 (351)
T 3mi9_A          170 LARAFSLAKNSQPNRYTNRVVTLWYRPPEL  199 (351)
T ss_dssp             TCEECCCCSSSSCCCCCSSCSCGGGCCHHH
T ss_pred             hcccccccccccccccCCcccccCccCchh
Confidence            99866422     22334577899999994

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.97  E-value=2.8e-31  Score=208.45  Aligned_cols=168  Identities=19%  Similarity=0.358  Sum_probs=135.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcE----EEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTF----IAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~----vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      .++|+..+.||+|+||.||+|... ++..    ||+|.+.... ....+.+.+|+.++++++|+||+++++++..     
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----   88 (327)
T 3poz_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT-----   88 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEES-----
T ss_pred             HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec-----
Confidence            467999999999999999999965 4443    5777775332 3455788999999999999999999998864     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                         +..++++|++.+++|.+++....  ..+++..++.++.|++.||.|||+   .+|+||||||+||++++++.+||+|
T Consensus        89 ---~~~~~v~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~Dikp~NIll~~~~~~kl~D  160 (327)
T 3poz_A           89 ---STVQLITQLMPFGCLLDYVREHK--DNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITD  160 (327)
T ss_dssp             ---SSEEEEEECCTTCBHHHHHHHST--TSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECC
T ss_pred             ---CCeEEEEEecCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCChheEEECCCCCEEEcc
Confidence               34789999999999999997643  458999999999999999999999   7999999999999999999999999


Q ss_pred             CCccccccccccc---cccccCccccCCCC
Q 028629          177 YNLPLLAENAEKV---GHVTPYSGSINPTN  203 (206)
Q Consensus       177 f~~a~~~~~~~~~---~~~~~~~~y~aPE~  203 (206)
                      ||+++........   ....++..|+|||.
T Consensus       161 fg~a~~~~~~~~~~~~~~~~~t~~y~aPE~  190 (327)
T 3poz_A          161 FGLAKLLGAEEKEYHAEGGKVPIKWMALES  190 (327)
T ss_dssp             TTHHHHHTTTCC-------CCCGGGSCHHH
T ss_pred             CcceeEccCCcccccccCCCccccccChHH
Confidence            9999877544322   22345678999995

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=1e-30  Score=205.53  Aligned_cols=172  Identities=17%  Similarity=0.312  Sum_probs=139.2

Q ss_pred             HHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhcc--CCCceeeeccccccccccC
Q 028629           19 LEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKL--RHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        19 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~~~~~~~   96 (206)
                      .....++|+..+.||+|+||.||+|... +..||+|++...   .......|.+++...  +|+||+++++++....   
T Consensus        32 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~---  104 (337)
T 3mdy_A           32 QRTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIKGT---  104 (337)
T ss_dssp             HTTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESC---
T ss_pred             ccccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCC---
Confidence            3345578999999999999999999885 899999998633   234445566666555  8999999999886511   


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCC--------ceeccCCccccEEecC
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP--------GVFSNNLKITDILLDQ  168 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~--------~i~h~dl~p~nil~~~  168 (206)
                      ......+++|||+++++|.+++...    .+++..++.++.|++.||.|||+   .        +++|+||||+||+++.
T Consensus       105 ~~~~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~---~~~~~~~~~~ivH~Dikp~Nill~~  177 (337)
T 3mdy_A          105 GSWTQLYLITDYHENGSLYDYLKST----TLDAKSMLKLAYSSVSGLCHLHT---EIFSTQGKPAIAHRDLKSKNILVKK  177 (337)
T ss_dssp             GGGCEEEEEECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHS---CBCSTTCBCCEECSCCCGGGEEECT
T ss_pred             CCCCceEEEEeccCCCcHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHHH---hhhhhccCCCEEecccchHHEEECC
Confidence            1125789999999999999999764    48999999999999999999998   6        9999999999999999


Q ss_pred             CCceeEccCCcccccccccc-----ccccccCccccCCCCC
Q 028629          169 NLVAKISSYNLPLLAENAEK-----VGHVTPYSGSINPTNS  204 (206)
Q Consensus       169 ~~~~kl~df~~a~~~~~~~~-----~~~~~~~~~y~aPE~~  204 (206)
                      ++.+||+|||++........     .....+|..|+|||..
T Consensus       178 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  218 (337)
T 3mdy_A          178 NGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVL  218 (337)
T ss_dssp             TSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHH
T ss_pred             CCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhc
Confidence            99999999999976644322     2245789999999964

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.97  E-value=6.8e-31  Score=204.62  Aligned_cols=168  Identities=17%  Similarity=0.327  Sum_probs=135.6

Q ss_pred             hcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      .++|+..+.||+|+||.||++... ++.||+|.+...  ...+.+.+|++++++++|+||+++++++.+         ..
T Consensus         7 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~---------~~   74 (307)
T 2eva_A            7 YKEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACLN---------PV   74 (307)
T ss_dssp             GGGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCTT---------TT
T ss_pred             HhHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEcC---------Cc
Confidence            467999999999999999999885 788999998633  345678899999999999999999998743         47


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc-eeEccCCccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV-AKISSYNLPL  181 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~-~kl~df~~a~  181 (206)
                      +++|||+++++|.+++........+++..++.++.|++.||.|||+....+++|+||||+||++++++. +||+|||++.
T Consensus        75 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~  154 (307)
T 2eva_A           75 CLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTAC  154 (307)
T ss_dssp             EEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC--
T ss_pred             EEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccc
Confidence            899999999999999987654345789999999999999999999843348999999999999998876 7999999998


Q ss_pred             cccccccccccccCccccCCCCC
Q 028629          182 LAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ......  ....++..|+|||..
T Consensus       155 ~~~~~~--~~~~gt~~y~aPE~~  175 (307)
T 2eva_A          155 DIQTHM--TNNKGSAAWMAPEVF  175 (307)
T ss_dssp             ------------CCTTSSCHHHH
T ss_pred             cccccc--ccCCCCCceEChhhh
Confidence            665432  234689999999953

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.97  E-value=1.3e-31  Score=210.14  Aligned_cols=167  Identities=16%  Similarity=0.328  Sum_probs=134.8

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc-cHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ++|...+.||+|+||.||+|... ++..||+|.+...... ....+.+|+.++++++|+||+++++++..       .+.
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-------~~~   74 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHT-------EKS   74 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEEC-------SSC
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEee-------CCE
Confidence            57999999999999999999986 7999999999654321 11234569999999999999999998865       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .+++|||+++ +|.+++....  ..+++..++.++.|++.||.|||+   .+|+|+||||+||+++.++.++|+|||++.
T Consensus        75 ~~lv~e~~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~  148 (324)
T 3mtl_A           75 LTLVFEYLDK-DLKQYLDDCG--NIINMHNVKLFLFQLLRGLAYCHR---QKVLHRDLKPQNLLINERGELKLADFGLAR  148 (324)
T ss_dssp             EEEEEECCSE-EHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHH---TTEEESSCCGGGEEECTTCCEEECSSSEEE
T ss_pred             EEEEeccccc-CHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCcCHHHEEECCCCCEEEccCcccc
Confidence            9999999975 8998887653  458899999999999999999999   799999999999999999999999999998


Q ss_pred             ccccc-ccccccccCccccCCCC
Q 028629          182 LAENA-EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       182 ~~~~~-~~~~~~~~~~~y~aPE~  203 (206)
                      ..... .......++.+|+|||.
T Consensus       149 ~~~~~~~~~~~~~~t~~y~aPE~  171 (324)
T 3mtl_A          149 AKSIPTKTYDNEVVTLWYRPPDI  171 (324)
T ss_dssp             CC------------CGGGCCHHH
T ss_pred             cccCCccccccccCcccccChhh
Confidence            66533 23334577899999995

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.97  E-value=4.7e-31  Score=211.96  Aligned_cols=165  Identities=14%  Similarity=0.263  Sum_probs=138.8

Q ss_pred             cCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCC--ccHHHHHHHHHHHhccC--CCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS--HSTRNFMHHIELISKLR--HCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~--h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .+|...+.||+|+||.||+|...++..||+|.+.....  ...+.+.+|+.+++++.  |+||+++++++..       .
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~-------~  128 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT-------D  128 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-------S
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEec-------C
Confidence            45999999999999999999987789999999975532  33467889999999996  5999999998865       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +.++++|| +.+++|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+|||++ ++.+||+|||+
T Consensus       129 ~~~~lv~E-~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~lH~---~~ivHrDlkp~NIll~-~~~~kl~DFG~  200 (390)
T 2zmd_A          129 QYIYMVME-CGNIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIV-DGMLKLIDFGI  200 (390)
T ss_dssp             SEEEEEEE-CCSEEHHHHHHHC---SSCCHHHHHHHHHHHHHHHHHHHT---TTCCCCCCCGGGEEES-SSCEEECCCSS
T ss_pred             CEEEEEEe-cCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHEEEE-CCeEEEEecCc
Confidence            67999999 5677999999876   458888999999999999999999   7999999999999996 57899999999


Q ss_pred             cccccccc---cccccccCccccCCCC
Q 028629          180 PLLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       180 a~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                      +.......   ......||+.|+|||.
T Consensus       201 a~~~~~~~~~~~~~~~~gt~~y~aPE~  227 (390)
T 2zmd_A          201 ANQMQPDTTSVVKDSQVGAVNYMPPEA  227 (390)
T ss_dssp             SCCC---------CCSCCCGGGCCHHH
T ss_pred             cccccCCCccccCCCCCcCCCccChHH
Confidence            98765432   2334679999999995

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.97  E-value=6.9e-31  Score=203.31  Aligned_cols=176  Identities=18%  Similarity=0.320  Sum_probs=140.7

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeecccccccc------c
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECY------F   94 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~------~   94 (206)
                      ..++|+..+.||+|+||.||+|... +++.||+|.+... ....+.+.+|+.++++++|+||+++++++....      .
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   82 (303)
T 1zy4_A            4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMT   82 (303)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC---
T ss_pred             ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhc
Confidence            3567999999999999999999976 7999999999633 334567889999999999999999998775411      0


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeE
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI  174 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl  174 (206)
                      ........+++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|
T Consensus        83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dlkp~Nil~~~~~~~kl  157 (303)
T 1zy4_A           83 AVKKKSTLFIQMEYCENGTLYDLIHSEN--LNQQRDEYWRLFRQILEALSYIHS---QGIIHRDLKPMNIFIDESRNVKI  157 (303)
T ss_dssp             ---CEEEEEEEEECCCSCBHHHHHHHSC--GGGCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEE
T ss_pred             ccccCCceEEEEecCCCCCHHHhhhccc--cccchHHHHHHHHHHHHHHHHHHh---CCeecccCCHHhEEEcCCCCEEE
Confidence            0112467899999999999999998643  467889999999999999999999   79999999999999999999999


Q ss_pred             ccCCcccccccc---------------ccccccccCccccCCCC
Q 028629          175 SSYNLPLLAENA---------------EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       175 ~df~~a~~~~~~---------------~~~~~~~~~~~y~aPE~  203 (206)
                      +|||++......               .......++..|+|||.
T Consensus       158 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  201 (303)
T 1zy4_A          158 GDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEV  201 (303)
T ss_dssp             CCCCCCSCTTC-------------------------CTTSCHHH
T ss_pred             eeCcchhhcccccchhccccccccccccccccCCCcccccCccc
Confidence            999999866432               22334578889999995

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.97  E-value=4.7e-31  Score=207.21  Aligned_cols=178  Identities=15%  Similarity=0.204  Sum_probs=134.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccC-CCceeeeccccccccc-cCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYF-DDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~-~~~~~   99 (206)
                      ..+|+..+.||+|+||.||+|... +++.||+|.+........+.+.+|+.++.++. |+||+++++++..... .....
T Consensus        27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~  106 (337)
T 3ll6_A           27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ  106 (337)
T ss_dssp             TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred             CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence            458999999999999999999976 79999999997665556677899999999996 9999999998743221 11235


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCc--eeccCCccccEEecCCCceeEccC
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG--VFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~--i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      ...++++||+. ++|.+++........+++..++.++.|++.||.|||+   .+  ++|+||||+||++++++.++|+||
T Consensus       107 ~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~~~ivH~Dikp~NIl~~~~~~~kl~Df  182 (337)
T 3ll6_A          107 AEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHR---QKPPIIHRDLKVENLLLSNQGTIKLCDF  182 (337)
T ss_dssp             EEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHT---SSSCCBCCCCCGGGCEECTTSCEEBCCC
T ss_pred             ceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh---CCCCEEEccCCcccEEECCCCCEEEecC
Confidence            56899999996 5998888652222468999999999999999999999   68  999999999999999999999999


Q ss_pred             Cccccccccccc-------------cccccCccccCCCCC
Q 028629          178 NLPLLAENAEKV-------------GHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~-------------~~~~~~~~y~aPE~~  204 (206)
                      |++.........             ....++..|+|||..
T Consensus       183 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~  222 (337)
T 3ll6_A          183 GSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEII  222 (337)
T ss_dssp             TTCBCCSSCC------------------------------
T ss_pred             ccceeccccCcccccccccccchhhccccCCCCcCChhhh
Confidence            999876543221             134688899999975

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.97  E-value=6.7e-31  Score=204.59  Aligned_cols=175  Identities=22%  Similarity=0.340  Sum_probs=146.3

Q ss_pred             HHHHhcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCCC-ccHHHHHHHHHHHhcc-CCCceeeeccccc
Q 028629           19 LEEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKS-HSTRNFMHHIELISKL-RHCHLVSALGHCF   90 (206)
Q Consensus        19 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~   90 (206)
                      +....++|...+.||+|+||.||+|...      ++..||+|.+..... ...+.+.+|+.+++++ +||||+++++++.
T Consensus        18 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~   97 (313)
T 1t46_A           18 WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT   97 (313)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEe
Confidence            3345678999999999999999999852      467899999975543 3346788999999999 8999999999886


Q ss_pred             cccccCCCCceEEEEEeecCCCCHHHHHhcCCC---------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCcee
Q 028629           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA---------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVF  155 (206)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~---------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~  155 (206)
                      .       .+..+++|||+++++|.+++.....               ...+++..++.++.|++.||.|||+   .+++
T Consensus        98 ~-------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~  167 (313)
T 1t46_A           98 I-------GGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS---KNCI  167 (313)
T ss_dssp             S-------SSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCC
T ss_pred             c-------CCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHH---CCee
Confidence            5       5678999999999999999976432               1248999999999999999999999   7999


Q ss_pred             ccCCccccEEecCCCceeEccCCcccccccccc---ccccccCccccCCCC
Q 028629          156 SNNLKITDILLDQNLVAKISSYNLPLLAENAEK---VGHVTPYSGSINPTN  203 (206)
Q Consensus       156 h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~~---~~~~~~~~~y~aPE~  203 (206)
                      |+||||+||++++++.++|+|||++........   .....++..|+|||.
T Consensus       168 H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  218 (313)
T 1t46_A          168 HRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPES  218 (313)
T ss_dssp             CSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHH
T ss_pred             cCCCccceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHH
Confidence            999999999999999999999999987765432   233456678999995

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.97  E-value=8.9e-32  Score=219.96  Aligned_cols=173  Identities=24%  Similarity=0.393  Sum_probs=140.3

Q ss_pred             HHHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        18 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .+....++|+..+.||+|+||.||+|.+.++..||+|.+.... ...+.+.+|+.++++++|+||+++++++..      
T Consensus       178 ~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~------  250 (452)
T 1fmk_A          178 AWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE------  250 (452)
T ss_dssp             CSBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS------
T ss_pred             ccccChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC------
Confidence            3444567889999999999999999998877789999997543 345788999999999999999999998742      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                        +..+++|||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+++||||+|+|||+++++.+||+||
T Consensus       251 --~~~~iv~e~~~~gsL~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~Nill~~~~~~kl~Df  324 (452)
T 1fmk_A          251 --EPIYIVTEYMSKGSLLDFLKGETG-KYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADF  324 (452)
T ss_dssp             --SSCEEEECCCTTCBHHHHHSHHHH-TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCC
T ss_pred             --CceEEEehhhcCCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChhhEEECCCCCEEECCC
Confidence              458999999999999999964321 348899999999999999999999   79999999999999999999999999


Q ss_pred             Cccccccccc--cccccccCccccCCCC
Q 028629          178 NLPLLAENAE--KVGHVTPYSGSINPTN  203 (206)
Q Consensus       178 ~~a~~~~~~~--~~~~~~~~~~y~aPE~  203 (206)
                      |+++......  ......++..|+|||.
T Consensus       325 G~a~~~~~~~~~~~~~~~~~~~y~aPE~  352 (452)
T 1fmk_A          325 GLARLIEDNEYTARQGAKFPIKWTAPEA  352 (452)
T ss_dssp             CTTC--------------CCGGGSCHHH
T ss_pred             ccceecCCCceecccCCcccccccCHhH
Confidence            9998765432  1222345678999995

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.97  E-value=1.1e-30  Score=205.66  Aligned_cols=172  Identities=20%  Similarity=0.413  Sum_probs=142.8

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe--------CCcEEEEEEeecCC-CccHHHHHHHHHHHhcc-CCCceeeecccccc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK--------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSALGHCFE   91 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~--------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~   91 (206)
                      ..++|...+.||+|+||.||+|...        ++..||+|.+.... ....+.+.+|+.+++++ +||||+++++++..
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~  112 (334)
T 2pvf_A           33 PRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ  112 (334)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             CHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEcc
Confidence            4578999999999999999999863        46789999997543 23346788999999999 89999999998865


Q ss_pred             ccccCCCCceEEEEEeecCCCCHHHHHhcCCC-------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccC
Q 028629           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA-------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNN  158 (206)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~d  158 (206)
                             .+..+++|||+++++|.+++.....             ...+++..++.++.|++.||.|||+   .+++|+|
T Consensus       113 -------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~D  182 (334)
T 2pvf_A          113 -------DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS---QKCIHRD  182 (334)
T ss_dssp             -------SSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHH---TTEECSC
T ss_pred             -------CCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh---CCeeCCC
Confidence                   5678999999999999999976431             1348899999999999999999999   7999999


Q ss_pred             CccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCC
Q 028629          159 LKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       159 l~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                      |||+||+++.++.+||+|||++.......   ......++..|+|||.
T Consensus       183 lkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  230 (334)
T 2pvf_A          183 LAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEA  230 (334)
T ss_dssp             CSGGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHH
T ss_pred             CccceEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHH
Confidence            99999999999999999999998765432   2223456678999995

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.97  E-value=2.3e-30  Score=203.96  Aligned_cols=174  Identities=20%  Similarity=0.349  Sum_probs=145.2

Q ss_pred             HHHHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhc--cCCCceeeeccccccccc
Q 028629           17 EELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISK--LRHCHLVSALGHCFECYF   94 (206)
Q Consensus        17 ~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~~~~~   94 (206)
                      .......++|...+.||+|+||.||+|.. +++.||+|.+...   ....+.+|.+++..  ++|+||+++++++.... 
T Consensus        35 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~-  109 (342)
T 1b6c_B           35 LVQRTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDN-  109 (342)
T ss_dssp             HHHHHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCC-
T ss_pred             eecccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccC-
Confidence            33445568999999999999999999998 5899999998633   34567788888887  68999999999876511 


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHh--------cCCCCceeccCCccccEEe
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLH--------TGIVPGVFSNNLKITDILL  166 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH--------~~~~~~i~h~dl~p~nil~  166 (206)
                        ......+++|||+++++|.+++...    .+++..++.++.|++.||.|||        +   .+++|+||||+||++
T Consensus       110 --~~~~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~---~~ivH~Dlkp~NIll  180 (342)
T 1b6c_B          110 --GTWTQLWLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGK---PAIAHRDLKSKNILV  180 (342)
T ss_dssp             --SSCCCEEEEECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCB---CEEECSCCSGGGEEE
T ss_pred             --CccceeEEEEeecCCCcHHHHHhcc----CccHHHHHHHHHHHHHHHHHHHHHHhhhccc---CCeeeCCCCHHHEEE
Confidence              1113789999999999999999764    4889999999999999999999        6   799999999999999


Q ss_pred             cCCCceeEccCCccccccccc-----cccccccCccccCCCCC
Q 028629          167 DQNLVAKISSYNLPLLAENAE-----KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       167 ~~~~~~kl~df~~a~~~~~~~-----~~~~~~~~~~y~aPE~~  204 (206)
                      ++++.++|+|||++.......     ......++..|+|||..
T Consensus       181 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  223 (342)
T 1b6c_B          181 KKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVL  223 (342)
T ss_dssp             CTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhh
Confidence            999999999999998765543     23445789999999964

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.97  E-value=1.7e-31  Score=205.32  Aligned_cols=170  Identities=18%  Similarity=0.299  Sum_probs=132.4

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe----CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~----~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      ...++|+..+.||+|+||.||+|...    .+..||+|.+.... ....+.+.+|+.++++++||||+++++++.     
T Consensus        12 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----   86 (281)
T 1mp8_A           12 IQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-----   86 (281)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-----
T ss_pred             EehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-----
Confidence            34678999999999999999999964    24579999886543 233457889999999999999999999863     


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                         .+..+++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||||+||++++++.++|+
T Consensus        87 ---~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~  158 (281)
T 1mp8_A           87 ---ENPVWIIMELCTLGELRSFLQVRK--YSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLG  158 (281)
T ss_dssp             ---SSSCEEEEECCTTEEHHHHHHHTT--TTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEEC
T ss_pred             ---cCccEEEEecCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHh---CCeecccccHHHEEECCCCCEEEC
Confidence               346889999999999999997653  358999999999999999999999   799999999999999999999999


Q ss_pred             cCCccccccccc--cccccccCccccCCCC
Q 028629          176 SYNLPLLAENAE--KVGHVTPYSGSINPTN  203 (206)
Q Consensus       176 df~~a~~~~~~~--~~~~~~~~~~y~aPE~  203 (206)
                      |||++.......  ......++..|+|||.
T Consensus       159 Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~  188 (281)
T 1mp8_A          159 DFGLSRYMEDSTYYKASKGKLPIKWMAPES  188 (281)
T ss_dssp             C-------------------CCGGGCCHHH
T ss_pred             ccccccccCcccccccccCCCcccccChhh
Confidence            999998765433  2233456678999995

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.97  E-value=6.9e-31  Score=200.69  Aligned_cols=165  Identities=22%  Similarity=0.403  Sum_probs=130.8

Q ss_pred             hcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCC----CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK----SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|+..+.||+|+||.||+|... +..||+|.+....    ....+.+.+|+++++.++|+||+++++++..       
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------   77 (271)
T 3dtc_A            6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLK-------   77 (271)
T ss_dssp             TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECC-------
T ss_pred             hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEec-------
Confidence            468999999999999999999974 8899999986543    2334678899999999999999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCc---eeccCCccccEEecC-------
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG---VFSNNLKITDILLDQ-------  168 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~---i~h~dl~p~nil~~~-------  168 (206)
                      .+..+++|||+++++|.+++..    ..+++..++.++.|++.||.|||+   .+   ++|+||+|+||++++       
T Consensus        78 ~~~~~lv~e~~~~~~L~~~~~~----~~~~~~~~~~i~~~l~~~l~~lH~---~~~~~i~H~dikp~Nil~~~~~~~~~~  150 (271)
T 3dtc_A           78 EPNLCLVMEFARGGPLNRVLSG----KRIPPDILVNWAVQIARGMNYLHD---EAIVPIIHRDLKSSNILILQKVENGDL  150 (271)
T ss_dssp             C--CEEEEECCTTEEHHHHHTS----SCCCHHHHHHHHHHHHHHHHHHHH---SSSSCCCCSCCSGGGEEESSCCSSSCC
T ss_pred             CCceEEEEEcCCCCCHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHh---CCCCceeecCCchHHEEEecccccccc
Confidence            5678999999999999998864    458999999999999999999999   57   999999999999986       


Q ss_pred             -CCceeEccCCccccccccccccccccCccccCCCC
Q 028629          169 -NLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       169 -~~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                       ++.++|+|||++......... ...++..|+|||.
T Consensus       151 ~~~~~kl~Dfg~~~~~~~~~~~-~~~~~~~y~aPE~  185 (271)
T 3dtc_A          151 SNKILKITDFGLAREWHRTTKM-SAAGAYAWMAPEV  185 (271)
T ss_dssp             SSCCEEECCCCC--------------CCGGGSCHHH
T ss_pred             cCcceEEccCCccccccccccc-CCCCccceeCHHH
Confidence             678999999999876654332 4678999999995

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.97  E-value=1.4e-30  Score=203.02  Aligned_cols=168  Identities=21%  Similarity=0.370  Sum_probs=140.8

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ..++|...+.||+|+||.||+|... +|..||+|.+....  ..+.+.+|+.+++.++|+||+++++++..       .+
T Consensus        27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~~   97 (314)
T 3com_A           27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFK-------NT   97 (314)
T ss_dssp             ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEE-------TT
T ss_pred             chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEe-------CC
Confidence            4578999999999999999999976 69999999997543  34678899999999999999999998865       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..+++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||++
T Consensus        98 ~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dl~p~Nil~~~~~~~kl~dfg~~  172 (314)
T 3com_A           98 DLWIVMEYCGAGSVSDIIRLRN--KTLTEDEIATILQSTLKGLEYLHF---MRKIHRDIKAGNILLNTEGHAKLADFGVA  172 (314)
T ss_dssp             EEEEEEECCTTEEHHHHHHHHT--CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTC
T ss_pred             EEEEEeecCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHh---CCCcCCCcCHHHEEECCCCCEEEeecccc
Confidence            7999999999999999987432  458999999999999999999999   79999999999999999999999999999


Q ss_pred             cccccc-ccccccccCccccCCCC
Q 028629          181 LLAENA-EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~y~aPE~  203 (206)
                      ...... .......++..|+|||.
T Consensus       173 ~~~~~~~~~~~~~~~~~~y~aPE~  196 (314)
T 3com_A          173 GQLTDTMAKRNTVIGTPFWMAPEV  196 (314)
T ss_dssp             EECBTTBSCBCCCCSCGGGCCHHH
T ss_pred             hhhhhhccccCccCCCCCccChhh
Confidence            876543 23444678899999995

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.97  E-value=1.6e-30  Score=201.85  Aligned_cols=173  Identities=18%  Similarity=0.295  Sum_probs=142.6

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC----CccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK----SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      ..++|...+.||+|+||.||++... ++..||+|.+....    ......+.+|+.++++++|+||+++++++..     
T Consensus         3 l~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----   77 (305)
T 2wtk_C            3 LIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYN-----   77 (305)
T ss_dssp             --CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----
T ss_pred             cccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEc-----
Confidence            4578999999999999999999975 78999999997542    2345678999999999999999999998743     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                      ......+++|||++++ +.+.+..... ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|
T Consensus        78 ~~~~~~~lv~e~~~~~-l~~~~~~~~~-~~~~~~~~~~~~~qi~~al~~LH~---~~i~H~dlkp~NIl~~~~~~~kl~d  152 (305)
T 2wtk_C           78 EEKQKMYMVMEYCVCG-MQEMLDSVPE-KRFPVCQAHGYFCQLIDGLEYLHS---QGIVHKDIKPGNLLLTTGGTLKISA  152 (305)
T ss_dssp             C---CEEEEEECCSEE-HHHHHHHSTT-CSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECC
T ss_pred             CCCCeEEEEehhccCC-HHHHHHhCcc-cccCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCcccEEEcCCCcEEeec
Confidence            2245789999999875 7777765433 568999999999999999999999   7999999999999999999999999


Q ss_pred             CCcccccccc---ccccccccCccccCCCCC
Q 028629          177 YNLPLLAENA---EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~---~~~~~~~~~~~y~aPE~~  204 (206)
                      ||++......   .......++..|+|||..
T Consensus       153 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  183 (305)
T 2wtk_C          153 LGVAEALHPFAADDTCRTSQGSPAFQPPEIA  183 (305)
T ss_dssp             CTTCEECCTTCSSCEECCCCSCGGGCCHHHH
T ss_pred             cccccccCccccccccccCCCCCCCcChhhc
Confidence            9999876432   233445788999999953

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.97  E-value=3.3e-31  Score=207.85  Aligned_cols=168  Identities=20%  Similarity=0.343  Sum_probs=137.7

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcE----EEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTF----IAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~----vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      .++|+..+.||+|+||.||+|... ++..    |++|.+.... ......+.+|+.++++++|+||+++++++.      
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~------   85 (325)
T 3kex_A           12 ETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP------   85 (325)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC------
T ss_pred             HhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc------
Confidence            467999999999999999999975 4544    7778775332 333456678999999999999999999874      


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                        ....++++||+.+++|.+++....  ..+++..++.++.|++.||.|||+   .+++||||||+||+++.++.++|+|
T Consensus        86 --~~~~~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~Nil~~~~~~~kl~D  158 (325)
T 3kex_A           86 --GSSLQLVTQYLPLGSLLDHVRQHR--GALGPQLLLNWGVQIAKGMYYLEE---HGMVHRNLAARNVLLKSPSQVQVAD  158 (325)
T ss_dssp             --BSSEEEEEECCTTCBSHHHHHSSG--GGSCTTHHHHHHHHHHHHHHHHHH---TTCCCSCCSSTTEEESSSSCEEECS
T ss_pred             --CCccEEEEEeCCCCCHHHHHHHcc--ccCCHHHHHHHHHHHHHHHHHHHh---CCCCCCccchheEEECCCCeEEECC
Confidence              346889999999999999987643  468899999999999999999999   7999999999999999999999999


Q ss_pred             CCccccccccc---cccccccCccccCCCC
Q 028629          177 YNLPLLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       177 f~~a~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                      ||+++......   ......++.+|+|||.
T Consensus       159 fg~a~~~~~~~~~~~~~~~~~~~~y~aPE~  188 (325)
T 3kex_A          159 FGVADLLPPDDKQLLYSEAKTPIKWMALES  188 (325)
T ss_dssp             CSGGGGSCCCTTCCC-----CCTTTSCHHH
T ss_pred             CCcccccCcccccccccCCCCcccccChHH
Confidence            99998775433   2234567778999995

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=204.98  Aligned_cols=170  Identities=19%  Similarity=0.374  Sum_probs=136.0

Q ss_pred             HhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHH--HhccCCCceeeeccccccccccCCCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIEL--ISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~--l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ..++|+..+.||+|+||.||+|.. ++..||+|++....   ...+..|.++  +..++|+||+++++.+.....  ...
T Consensus        11 ~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~--~~~   84 (336)
T 3g2f_A           11 DLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTA--DGR   84 (336)
T ss_dssp             CTTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECT--TSC
T ss_pred             ChHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheeccccccc--CCC
Confidence            357899999999999999999977 68999999997432   2334444444  555899999999875543222  224


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCC---------ceeccCCccccEEecCCC
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP---------GVFSNNLKITDILLDQNL  170 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~---------~i~h~dl~p~nil~~~~~  170 (206)
                      ...+++|||+++++|.+++...    ..++..++.++.|++.||.|||+   .         +|+|+||||+|||++.++
T Consensus        85 ~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~qi~~~L~~LH~---~~~~~~~~~~~ivH~Dikp~Nill~~~~  157 (336)
T 3g2f_A           85 MEYLLVMEYYPNGSLXKYLSLH----TSDWVSSCRLAHSVTRGLAYLHT---ELPRGDHYKPAISHRDLNSRNVLVKNDG  157 (336)
T ss_dssp             EEEEEEECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHC---CBCCGGGCBCCEECSSCSGGGEEECTTS
T ss_pred             ceEEEEEecCCCCcHHHHHhhc----ccchhHHHHHHHHHHHHHHHHHh---hhccccccccceeecccccceEEEcCCC
Confidence            5689999999999999999764    35888999999999999999999   6         999999999999999999


Q ss_pred             ceeEccCCcccccccc---------ccccccccCccccCCCCC
Q 028629          171 VAKISSYNLPLLAENA---------EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       171 ~~kl~df~~a~~~~~~---------~~~~~~~~~~~y~aPE~~  204 (206)
                      .+||+|||++......         .......+|..|+|||..
T Consensus       158 ~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  200 (336)
T 3g2f_A          158 TCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVL  200 (336)
T ss_dssp             CEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHH
T ss_pred             cEEEeeccceeecccccccCccccccccccCCCccceeCchhh
Confidence            9999999999866432         122235789999999964

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.97  E-value=5.3e-31  Score=208.17  Aligned_cols=170  Identities=13%  Similarity=0.247  Sum_probs=146.3

Q ss_pred             hcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCc---c--------------HHHHHHHHHHHhccCCCceeee
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH---S--------------TRNFMHHIELISKLRHCHLVSA   85 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~---~--------------~~~~~~e~~~l~~l~h~~i~~~   85 (206)
                      .++|...+.||+|+||.||+|.. ++..||+|.+......   .              .+.+.+|+.++++++|+||+++
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  108 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC  108 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence            57899999999999999999999 8999999999754211   1              1788999999999999999999


Q ss_pred             ccccccccccCCCCceEEEEEeecCCCCHHHH------HhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCC
Q 028629           86 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW------ISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNL  159 (206)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~------~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl  159 (206)
                      ++++..       .+..+++|||+++++|.++      +..... ..+++..++.++.|++.||.|||+.  .+++|+||
T Consensus       109 ~~~~~~-------~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~--~~i~H~dl  178 (348)
T 2pml_X          109 EGIITN-------YDEVYIIYEYMENDSILKFDEYFFVLDKNYT-CFIPIQVIKCIIKSVLNSFSYIHNE--KNICHRDV  178 (348)
T ss_dssp             SEEEES-------SSEEEEEEECCTTCBSSEESSSEESSCSSSC-CCCCHHHHHHHHHHHHHHHHHHHHT--SCEECCCC
T ss_pred             EEEEee-------CCeEEEEEeccCCCcHHHHHHHhhhhhhccc-cCCCHHHHHHHHHHHHHHHHHHhcc--CCEeecCC
Confidence            999865       5689999999999999998      544212 5689999999999999999999972  49999999


Q ss_pred             ccccEEecCCCceeEccCCccccccccccccccccCccccCCCCC
Q 028629          160 KITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       160 ~p~nil~~~~~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +|+||+++.++.++|+|||++...... ......++..|+|||..
T Consensus       179 ~p~Nil~~~~~~~kl~dfg~~~~~~~~-~~~~~~~~~~y~aPE~~  222 (348)
T 2pml_X          179 KPSNILMDKNGRVKLSDFGESEYMVDK-KIKGSRGTYEFMPPEFF  222 (348)
T ss_dssp             CGGGEEECTTSCEEECCCTTCEECBTT-EECSSCSCGGGCCGGGG
T ss_pred             ChHhEEEcCCCcEEEeccccccccccc-cccCCCCCcCccCchhh
Confidence            999999999999999999999876554 34446889999999975

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.97  E-value=1.8e-30  Score=206.67  Aligned_cols=173  Identities=14%  Similarity=0.273  Sum_probs=145.1

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ...++|+..+.||+|+||.||+|... ++..||+|.+.... ....+.+.+|++++++++|+||+++++++.....  ..
T Consensus        24 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~--~~  101 (364)
T 3qyz_A           24 DVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTI--EQ  101 (364)
T ss_dssp             CCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSST--TT
T ss_pred             cccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCc--cc
Confidence            33578999999999999999999976 78899999997443 2334678899999999999999999998865221  12


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ....++++|++.+ +|.+++...    .+++..++.++.|++.||.|||+   .+|+|+||||+||+++.++.++|+|||
T Consensus       102 ~~~~~iv~e~~~~-~L~~~l~~~----~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~Dfg  173 (364)
T 3qyz_A          102 MKDVYIVQDLMET-DLYKLLKTQ----HLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFG  173 (364)
T ss_dssp             CCCEEEEEECCSE-EHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCT
T ss_pred             cceEEEEEcccCc-CHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCChHhEEECCCCCEEEEeCc
Confidence            3468999999975 999988763    48999999999999999999999   799999999999999999999999999


Q ss_pred             cccccccccc----ccccccCccccCCCC
Q 028629          179 LPLLAENAEK----VGHVTPYSGSINPTN  203 (206)
Q Consensus       179 ~a~~~~~~~~----~~~~~~~~~y~aPE~  203 (206)
                      ++........    .....+|++|+|||.
T Consensus       174 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~  202 (364)
T 3qyz_A          174 LARVADPDHDHTGFLTEYVATRWYRAPEI  202 (364)
T ss_dssp             TCEECCGGGCBCCTTCCCCSCGGGCCHHH
T ss_pred             ceEecCCCCCccccccccccccCCCCCHH
Confidence            9987654432    233588999999995

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.97  E-value=3.7e-31  Score=204.93  Aligned_cols=170  Identities=19%  Similarity=0.335  Sum_probs=139.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEeC----CcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKN----GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~----~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ..+|+..+.||+|+||.||+|...+    ...+|+|.+.... ....+.+.+|+.++++++|+||+++++++..      
T Consensus        24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~------   97 (298)
T 3f66_A           24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR------   97 (298)
T ss_dssp             GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECC------
T ss_pred             ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEc------
Confidence            4578889999999999999999642    2358899887533 2344678899999999999999999998654      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      ..+..+++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||||+||++++++.++|+||
T Consensus        98 ~~~~~~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~ql~~~l~~lH~---~~i~H~dikp~Nil~~~~~~~kl~Df  172 (298)
T 3f66_A           98 SEGSPLVVLPYMKHGDLRNFIRNET--HNPTVKDLIGFGLQVAKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADF  172 (298)
T ss_dssp             SSSCCEEEEECCTTCBHHHHHHCTT--CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECSC
T ss_pred             CCCceEEEEeCCCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCchheEEECCCCCEEECcc
Confidence            2456889999999999999997643  457899999999999999999999   79999999999999999999999999


Q ss_pred             Cccccccccc-----cccccccCccccCCCC
Q 028629          178 NLPLLAENAE-----KVGHVTPYSGSINPTN  203 (206)
Q Consensus       178 ~~a~~~~~~~-----~~~~~~~~~~y~aPE~  203 (206)
                      |++.......     ......++..|+|||.
T Consensus       173 g~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~  203 (298)
T 3f66_A          173 GLARDMYDKEYYSVHNKTGAKLPVKWMALES  203 (298)
T ss_dssp             GGGCCCSCGGGCBC-----CCBCGGGSCHHH
T ss_pred             cccccccccchhccccccCCCCCccccChHH
Confidence            9998665432     2223455678999995

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.97  E-value=5.3e-31  Score=209.75  Aligned_cols=173  Identities=10%  Similarity=0.124  Sum_probs=137.6

Q ss_pred             hcCCcccceeccCcceeEEEEEEeC------CcEEEEEEeecCCCcc-----------HHHHHHHHHHHhccCCCceeee
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHS-----------TRNFMHHIELISKLRHCHLVSA   85 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~------~~~vaiK~~~~~~~~~-----------~~~~~~e~~~l~~l~h~~i~~~   85 (206)
                      .++|+..+.||+|+||.||+|...+      ++.||+|++.......           ......|+..++.++|+||+++
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~  113 (364)
T 3op5_A           34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY  113 (364)
T ss_dssp             CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred             CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence            3589999999999999999999753      4789999987543211           1123446667778889999999


Q ss_pred             ccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEE
Q 028629           86 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDIL  165 (206)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil  165 (206)
                      ++++....   ......+++|||+ +++|.+++....  ..+++..++.++.|++.||.|||+   .+|+||||||+|||
T Consensus       114 ~~~~~~~~---~~~~~~~lv~e~~-g~~L~~~~~~~~--~~l~~~~~~~i~~qi~~~l~~lH~---~~iiHrDlkp~Nil  184 (364)
T 3op5_A          114 WGSGLHDK---NGKSYRFMIMDRF-GSDLQKIYEANA--KRFSRKTVLQLSLRILDILEYIHE---HEYVHGDIKASNLL  184 (364)
T ss_dssp             EEEEEEEE---TTEEEEEEEEECE-EEEHHHHHHHTT--SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEE
T ss_pred             Eeeeeecc---CCcceEEEEEeCC-CCCHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeEEecCCHHHEE
Confidence            99886511   1235689999999 889999997753  468999999999999999999999   79999999999999


Q ss_pred             ec--CCCceeEccCCccccccccccc--------cccccCccccCCCCC
Q 028629          166 LD--QNLVAKISSYNLPLLAENAEKV--------GHVTPYSGSINPTNS  204 (206)
Q Consensus       166 ~~--~~~~~kl~df~~a~~~~~~~~~--------~~~~~~~~y~aPE~~  204 (206)
                      ++  .++.+||+|||+++........        ....+|..|+|||..
T Consensus       185 l~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  233 (364)
T 3op5_A          185 LNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAH  233 (364)
T ss_dssp             EESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHH
T ss_pred             EecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHh
Confidence            99  8899999999999876543211        234589999999963

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.97  E-value=3.1e-31  Score=203.47  Aligned_cols=174  Identities=17%  Similarity=0.320  Sum_probs=144.2

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ..++|+..+.||+|+||.||++... +++.||+|.+....  ....+.+.+|+.++++++|+||+++++++..     ..
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~   78 (279)
T 2w5a_A            4 RAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIID-----RT   78 (279)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----GG
T ss_pred             chhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEec-----CC
Confidence            3578999999999999999999976 79999999997543  2334578899999999999999999997753     12


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCC-CCcccCHHHHHHHHHHHHHHHHHHhcCCCCc-----eeccCCccccEEecCCCce
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGH-AWQSLTWTQRISAAIGVARGIQFLHTGIVPG-----VFSNNLKITDILLDQNLVA  172 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~-----i~h~dl~p~nil~~~~~~~  172 (206)
                      ....+++|||+++++|.+++.... ....+++..++.++.|++.||.|||+   .+     ++|+||+|+||++++++.+
T Consensus        79 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~~~~~~ivH~dl~p~NIl~~~~~~~  155 (279)
T 2w5a_A           79 NTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHR---RSDGGHTVLHRDLKPANVFLDGKQNV  155 (279)
T ss_dssp             GTEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH---HC------CCCCCSGGGEEECSSSCE
T ss_pred             CceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhc---ccCCCCeeEEeccchhhEEEcCCCCE
Confidence            467999999999999999987531 11458999999999999999999999   67     9999999999999999999


Q ss_pred             eEccCCccccccccc-cccccccCccccCCCC
Q 028629          173 KISSYNLPLLAENAE-KVGHVTPYSGSINPTN  203 (206)
Q Consensus       173 kl~df~~a~~~~~~~-~~~~~~~~~~y~aPE~  203 (206)
                      +|+|||++....... ......++..|+|||.
T Consensus       156 kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  187 (279)
T 2w5a_A          156 KLGDFGLARILNHDTSFAKTFVGTPYYMSPEQ  187 (279)
T ss_dssp             EECCCCHHHHC---CHHHHHHHSCCTTCCHHH
T ss_pred             EEecCchheeeccccccccccCCCccccChHH
Confidence            999999998765432 2334578899999995

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.97  E-value=1.5e-30  Score=201.41  Aligned_cols=169  Identities=20%  Similarity=0.365  Sum_probs=142.3

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|+..+.||+|+||.||+|... +++.||+|.+....  ....+.+.+|+.++++++|+||+++++++..       .
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-------~   74 (299)
T 2r3i_A            2 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT-------E   74 (299)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEE-------T
T ss_pred             cchhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEec-------C
Confidence            468999999999999999999986 79999999986543  2334678899999999999999999999865       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +..+++|||+. ++|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+|||+
T Consensus        75 ~~~~lv~e~~~-~~L~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~dfg~  149 (299)
T 2r3i_A           75 NKLYLVFEFLH-QDLKKFMDASAL-TGIPLPLIKSYLFQLLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGL  149 (299)
T ss_dssp             TEEEEEEECCS-EEHHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECSTTH
T ss_pred             CceEEEEEccc-CCHHHHHHhhhc-cCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCCHHHeEEcCCCCEEECcchh
Confidence            67999999997 599999876533 458899999999999999999999   7999999999999999999999999999


Q ss_pred             ccccccc-ccccccccCccccCCCC
Q 028629          180 PLLAENA-EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       180 a~~~~~~-~~~~~~~~~~~y~aPE~  203 (206)
                      +...... .......++..|+|||.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~y~aPE~  174 (299)
T 2r3i_A          150 ARAFGVPVRTYTHEVVTLWYRAPEI  174 (299)
T ss_dssp             HHHHCCCSBCTTSCBCCCTTCCHHH
T ss_pred             hhhccCCccccCcccccccccCcHH
Confidence            9876543 23334577889999995

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.97  E-value=7.2e-31  Score=212.75  Aligned_cols=171  Identities=20%  Similarity=0.288  Sum_probs=138.0

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      .+|...+.||+|+||.||+|... +++.||+|.+......    ..+|+++++.++|+||+++++++..... .....++
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~~----~~~E~~il~~l~hpniv~l~~~~~~~~~-~~~~~~~  128 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRF----KNRELQIMRKLDHCNIVRLRYFFYSSGE-KKDEVYL  128 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTTS----CCHHHHHHHTCCCTTBCCEEEEEEEEET-TTTEEEE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccchh----HHHHHHHHHHcCCCCccceeeEEeccCC-CCcceeE
Confidence            36899999999999999999986 7999999998754322    2359999999999999999998754221 1123457


Q ss_pred             EEEEeecCCCCHHHHHhcC-CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC-CceeEccCCcc
Q 028629          103 FLIFEYVPNGTLRSWISEG-HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN-LVAKISSYNLP  180 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~-~~~kl~df~~a  180 (206)
                      +++|||+++ ++.+.+... .....+++..++.++.|++.||.|||+   .+|+||||||+|||++.+ +.+||+|||++
T Consensus       129 ~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NILl~~~~~~~kl~DFG~a  204 (420)
T 1j1b_A          129 NLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSA  204 (420)
T ss_dssp             EEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred             Eeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChhhEEEeCCCCeEEeccchhh
Confidence            899999976 666555421 111568999999999999999999999   799999999999999955 67899999999


Q ss_pred             ccccccccccccccCccccCCCC
Q 028629          181 LLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       181 ~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      +............++.+|+|||.
T Consensus       205 ~~~~~~~~~~~~~~t~~y~aPE~  227 (420)
T 1j1b_A          205 KQLVRGEPNVSYICSRYYRAPEL  227 (420)
T ss_dssp             EECCTTCCCCSCCSCTTSCCHHH
T ss_pred             hhcccCCCceeeeeCCCcCCHHH
Confidence            97765555555788999999995

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.97  E-value=2.5e-31  Score=205.25  Aligned_cols=172  Identities=17%  Similarity=0.349  Sum_probs=134.1

Q ss_pred             HHHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        18 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      ......++|+..+.||+|+||.||+|...  ..+|+|.+....  ....+.+.+|+.++++++|+||+++++++.     
T Consensus        18 ~~ei~~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----   90 (289)
T 3og7_A           18 DWEIPDGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-----   90 (289)
T ss_dssp             CCBCCTTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----
T ss_pred             CCccCccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeecc-----
Confidence            33445678999999999999999999864  359999987553  233467889999999999999999998653     


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                         ....+++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||||+||++++++.++|+
T Consensus        91 ---~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~L~~lH~---~~i~H~Dlkp~Nil~~~~~~~kl~  162 (289)
T 3og7_A           91 ---APQLAIVTQWCEGSSLYHHLHASE--TKFEMKKLIDIARQTARGMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIG  162 (289)
T ss_dssp             ---SSSCEEEEECCCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTEEEEC
T ss_pred             ---CCccEEEEEecCCCcHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHh---CCcccccCccceEEECCCCCEEEc
Confidence               346899999999999999986543  468999999999999999999999   799999999999999999999999


Q ss_pred             cCCcccccccc---ccccccccCccccCCCCC
Q 028629          176 SYNLPLLAENA---EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       176 df~~a~~~~~~---~~~~~~~~~~~y~aPE~~  204 (206)
                      |||++......   .......++..|+|||..
T Consensus       163 Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  194 (289)
T 3og7_A          163 DFGLATEKSRWSGSHQFEQLSGSILWMAPEVI  194 (289)
T ss_dssp             CCC------------------CCCTTCCHHHH
T ss_pred             cceeccccccccccccccccCCCccccCchhh
Confidence            99999865432   233345789999999953

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.97  E-value=1.2e-30  Score=198.98  Aligned_cols=167  Identities=22%  Similarity=0.413  Sum_probs=142.7

Q ss_pred             hcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|...+.||+|+||.||+|... +..||+|++....  ....+.+.+|+.++++++|+||+++++++..     ....
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~   82 (271)
T 3kmu_A            9 FKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQS-----PPAP   82 (271)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECT-----TTSS
T ss_pred             HHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEcc-----CCCC
Confidence            568999999999999999999985 8899999997653  2334578899999999999999999998865     2236


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCc--eeccCCccccEEecCCCceeEccCC
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG--VFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~--i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ..+++|||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+  ++|+||+|+||++++++.++|+||+
T Consensus        83 ~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~---~~~~i~H~dikp~Nil~~~~~~~~l~~~~  158 (271)
T 3kmu_A           83 HPTLITHWMPYGSLYNVLHEGTN-FVVDQSQAVKFALDMARGMAFLHT---LEPLIPRHALNSRSVMIDEDMTARISMAD  158 (271)
T ss_dssp             SCEEEEECCTTCBHHHHHHSCSS-CCCCHHHHHHHHHHHHHHHHHHTT---SSSCCTTCCCSGGGEEECTTSCEEEEGGG
T ss_pred             CeEeeecccCCCcHHHHHhhccc-CCCCHHHHHHHHHHHHHHHHHHhc---CCCceecCCCccceEEEcCCcceeEEecc
Confidence            78999999999999999987543 458999999999999999999999   67  9999999999999999999999888


Q ss_pred             ccccccccccccccccCccccCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      ++.....    ....++..|+|||.
T Consensus       159 ~~~~~~~----~~~~~t~~y~aPE~  179 (271)
T 3kmu_A          159 VKFSFQS----PGRMYAPAWVAPEA  179 (271)
T ss_dssp             SCCTTSC----TTCBSCGGGSCHHH
T ss_pred             ceeeecc----cCccCCccccChhh
Confidence            8765433    22467889999995

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.97  E-value=1.6e-31  Score=205.05  Aligned_cols=169  Identities=20%  Similarity=0.387  Sum_probs=135.4

Q ss_pred             HHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           20 EEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        20 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ....++|+..+.||+|++|.||++... +..||+|.+...  ...+.+.+|+.++++++|+||+++++++..      ..
T Consensus        17 ~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~------~~   87 (278)
T 1byg_A           17 ALNMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVE------EK   87 (278)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECC------C-
T ss_pred             cCChhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecch--hHHHHHHHHHHHHHhCCCCCEeeEEEEEEc------CC
Confidence            344678999999999999999999874 889999998743  345678899999999999999999998654      23


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +..+++|||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||+
T Consensus        88 ~~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~l~Dfg~  163 (278)
T 1byg_A           88 GGLYIVTEYMAKGSLVDYLRSRGR-SVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGL  163 (278)
T ss_dssp             -CCEEEECCCTTEEHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSCEEECCCCC
T ss_pred             CceEEEEecCCCCCHHHHHHhccc-ccCCHHHHHHHHHHHHHHHHHHHh---CCccccCCCcceEEEeCCCcEEEeeccc
Confidence            468999999999999999976421 347899999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      +........  ...++..|+|||.
T Consensus       164 ~~~~~~~~~--~~~~~~~y~aPE~  185 (278)
T 1byg_A          164 TKEASSTQD--TGKLPVKWTAPEA  185 (278)
T ss_dssp             --------------CCTTTSCHHH
T ss_pred             ccccccccc--CCCccccccCHHH
Confidence            986654332  2467788999995

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.97  E-value=1.9e-31  Score=213.34  Aligned_cols=175  Identities=14%  Similarity=0.186  Sum_probs=135.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC---CCccHHHHHHHH---HHHhccCCCceeeecccccccc--
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHI---ELISKLRHCHLVSALGHCFECY--   93 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~---~~l~~l~h~~i~~~~~~~~~~~--   93 (206)
                      .++|...+.||+|+||.||+|... +|+.||+|++...   .....+.+.+|+   +.+++++||||+++++.+....  
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            467888999999999999999965 7999999999743   334457788999   5566668999999985543200  


Q ss_pred             ccCC------------CC---ceEEEEEeecCCCCHHHHHhcCCC----CcccCHHHHHHHHHHHHHHHHHHhcCCCCce
Q 028629           94 FDDS------------SV---SRIFLIFEYVPNGTLRSWISEGHA----WQSLTWTQRISAAIGVARGIQFLHTGIVPGV  154 (206)
Q Consensus        94 ~~~~------------~~---~~~~lv~e~~~~~~L~~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i  154 (206)
                      +..+            ..   ...+++|||+ +|+|.+++.....    ...+++..++.++.|++.||.|||+   .+|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~i  227 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH---YGL  227 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHH---TTE
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHh---CCe
Confidence            1101            00   1378999999 5799999875311    1345568889999999999999999   799


Q ss_pred             eccCCccccEEecCCCceeEccCCccccccccccccccccCccccCCCCC
Q 028629          155 FSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       155 ~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +||||||+|||++.++.+||+|||+++....  ......| ..|+|||..
T Consensus       228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~--~~~~~~g-~~y~aPE~~  274 (377)
T 3byv_A          228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA--RVVSSVS-RGFEPPELE  274 (377)
T ss_dssp             ECSCCCGGGEEECTTCCEEECCGGGCEETTC--EEECCCC-TTCCCHHHH
T ss_pred             ecCCCCHHHEEEcCCCCEEEEechhheecCC--cccCCCC-cCccChhhh
Confidence            9999999999999999999999999986544  2334567 899999963

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.97  E-value=7.8e-31  Score=210.94  Aligned_cols=173  Identities=16%  Similarity=0.219  Sum_probs=137.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      ..+|...+.||+|+||.||+|....+..+|+|.+.......    .+|+++++.++|+||+++++++..... ......+
T Consensus        39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~~----~~E~~il~~l~h~niv~l~~~~~~~~~-~~~~~~~  113 (394)
T 4e7w_A           39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFK----NRELQIMRIVKHPNVVDLKAFFYSNGD-KKDEVFL  113 (394)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTSC----CHHHHHHHTCCCTTBCCEEEEEEEESS-SSSCEEE
T ss_pred             cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcchH----HHHHHHHHhCCCCCcceEEEEEEecCC-CCCceEE
Confidence            35799999999999999999998766668888886443222    258999999999999999998865221 1223458


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec-CCCceeEccCCccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD-QNLVAKISSYNLPL  181 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~-~~~~~kl~df~~a~  181 (206)
                      +++|||++++.+............+++..++.++.|++.||.|||+   .+|+||||||+||+++ +++.+||+|||+++
T Consensus       114 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~  190 (394)
T 4e7w_A          114 NLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHS---IGICHRDIKPQNLLLDPPSGVLKLIDFGSAK  190 (394)
T ss_dssp             EEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             EEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCCHHHEEEcCCCCcEEEeeCCCcc
Confidence            8999999874433333211111568999999999999999999999   7999999999999999 78999999999999


Q ss_pred             cccccccccccccCccccCCCC
Q 028629          182 LAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       182 ~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      ............++..|+|||.
T Consensus       191 ~~~~~~~~~~~~~t~~y~aPE~  212 (394)
T 4e7w_A          191 ILIAGEPNVSYICSRYYRAPEL  212 (394)
T ss_dssp             ECCTTCCCCSSCSCGGGCCHHH
T ss_pred             cccCCCCCcccccCcCccCHHH
Confidence            8766665566788999999995

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.97  E-value=2.7e-30  Score=199.90  Aligned_cols=167  Identities=11%  Similarity=0.143  Sum_probs=142.2

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|+..+.||+|+||.||+|... +++.||+|++....  ..+.+.+|+..++.+ +|++++++++++..       ..
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~-------~~   79 (298)
T 1csn_A            9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQE-------GL   79 (298)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEE-------TT
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCC-------Cc
Confidence            568999999999999999999975 79999999986443  234577899999999 79999999988755       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc-----eeEc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV-----AKIS  175 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~-----~kl~  175 (206)
                      ..+++||++ +++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.     ++|+
T Consensus        80 ~~~lv~e~~-~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~  153 (298)
T 1csn_A           80 HNVLVIDLL-GPSLEDLLDLCG--RKFSVKTVAMAAKQMLARVQSIHE---KSLVYRDIKPDNFLIGRPNSKNANMIYVV  153 (298)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECCSSSTTTTCEEEC
T ss_pred             eeEEEEEec-CCCHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEeccCCCCCCCeEEEE
Confidence            889999999 889999998653  358999999999999999999999   79999999999999987765     9999


Q ss_pred             cCCcccccccccc--------ccccccCccccCCCCC
Q 028629          176 SYNLPLLAENAEK--------VGHVTPYSGSINPTNS  204 (206)
Q Consensus       176 df~~a~~~~~~~~--------~~~~~~~~~y~aPE~~  204 (206)
                      |||++........        .....++..|+|||..
T Consensus       154 Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  190 (298)
T 1csn_A          154 DFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTH  190 (298)
T ss_dssp             CCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHH
T ss_pred             ECccccccccccccccccccCccCCCCCcccCCchhh
Confidence            9999987665422        3445788999999953

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.97  E-value=9.7e-31  Score=201.64  Aligned_cols=171  Identities=13%  Similarity=0.222  Sum_probs=129.3

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc-c-HHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH-S-TRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~-~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ..++|+..+.||+|+||.||+|... +++.||+|.+...... . .+.+.++...++.+.|+||+++++++..       
T Consensus         5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~-------   77 (290)
T 3fme_A            5 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFR-------   77 (290)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEC-------
T ss_pred             cHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeec-------
Confidence            3578999999999999999999975 7999999999754322 2 2234445556888899999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcC-CCCcccCHHHHHHHHHHHHHHHHHHhcCCCC-ceeccCCccccEEecCCCceeEcc
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEG-HAWQSLTWTQRISAAIGVARGIQFLHTGIVP-GVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~-~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                      .+..+++|||+++ +|.+++... .....+++..++.++.|++.||.|||+   . +++|+||||+||+++.++.++|+|
T Consensus        78 ~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~~i~H~dlkp~Nil~~~~~~~kl~D  153 (290)
T 3fme_A           78 EGDVWICMELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHS---KLSVIHRDVKPSNVLINALGQVKMCD  153 (290)
T ss_dssp             SSSEEEEEECCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH---HSCCCCCCCSGGGCEECTTCCEEBCC
T ss_pred             cCCEEEEEehhcc-chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhh---cCCeecCCCCHHHEEECCCCCEEEee
Confidence            5679999999975 887776531 111568999999999999999999999   6 999999999999999999999999


Q ss_pred             CCccccccccccccccccCccccCCCC
Q 028629          177 YNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       177 f~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      ||++.............++..|+|||.
T Consensus       154 fg~~~~~~~~~~~~~~~~t~~y~aPE~  180 (290)
T 3fme_A          154 FGISGYLVDDVAKDIDAGCKPYMAPER  180 (290)
T ss_dssp             C---------------CCCCCCSCHHH
T ss_pred             cCCcccccccccccccCCCccccChhh
Confidence            999988776666666689999999997

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.97  E-value=7.1e-31  Score=204.70  Aligned_cols=182  Identities=20%  Similarity=0.349  Sum_probs=149.5

Q ss_pred             eeCHHHHHHHhcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCCC-ccHHHHHHHHHHHhcc-CCCceee
Q 028629           13 TFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKS-HSTRNFMHHIELISKL-RHCHLVS   84 (206)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l-~h~~i~~   84 (206)
                      .+...++....++|+..+.||+|+||.||+|...      +++.||+|.+..... ...+.+.+|+.++.++ +|+||++
T Consensus        16 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~   95 (316)
T 2xir_A           16 PYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVN   95 (316)
T ss_dssp             CCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             cccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeee
Confidence            3455566667789999999999999999999842      467899999975433 2345788999999999 6899999


Q ss_pred             eccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCC-------------CcccCHHHHHHHHHHHHHHHHHHhcCCC
Q 028629           85 ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA-------------WQSLTWTQRISAAIGVARGIQFLHTGIV  151 (206)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~  151 (206)
                      +++++..      .....+++|||+++++|.+++.....             ...+++..++.++.|++.||.|||+   
T Consensus        96 ~~~~~~~------~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---  166 (316)
T 2xir_A           96 LLGACTK------PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---  166 (316)
T ss_dssp             EEEEECC------TTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHH---
T ss_pred             EEEEEec------CCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHh---
Confidence            9998754      23458999999999999999976532             1228899999999999999999999   


Q ss_pred             CceeccCCccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCC
Q 028629          152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       152 ~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                      .+++|+||||+||++++++.++|+|||++.......   ......++..|+|||.
T Consensus       167 ~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~  221 (316)
T 2xir_A          167 RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPET  221 (316)
T ss_dssp             TTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHH
T ss_pred             CCcccccCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchh
Confidence            799999999999999999999999999998664332   2334567788999994

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.97  E-value=4.7e-31  Score=219.77  Aligned_cols=173  Identities=24%  Similarity=0.393  Sum_probs=145.0

Q ss_pred             HHHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        18 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .+....++|+..+.||+|+||.||+|.+.++..||+|++.... ...+.+.+|+++|++++|+||+++++++..      
T Consensus       261 ~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~------  333 (535)
T 2h8h_A          261 AWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE------  333 (535)
T ss_dssp             CSBCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS------
T ss_pred             ceecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee------
Confidence            3444567889999999999999999998877789999997543 345789999999999999999999998742      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                        +..++||||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+|+||||||+|||+++++.+||+||
T Consensus       334 --~~~~lv~e~~~~gsL~~~l~~~~~-~~l~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~NIll~~~~~~kl~DF  407 (535)
T 2h8h_A          334 --EPIYIVTEYMSKGSLLDFLKGETG-KYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADF  407 (535)
T ss_dssp             --SSCEEEECCCTTEEHHHHHSHHHH-TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCT
T ss_pred             --ccceEeeehhcCCcHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHhhEEEcCCCcEEEccc
Confidence              458999999999999999964321 348899999999999999999999   79999999999999999999999999


Q ss_pred             Cccccccccc--cccccccCccccCCCC
Q 028629          178 NLPLLAENAE--KVGHVTPYSGSINPTN  203 (206)
Q Consensus       178 ~~a~~~~~~~--~~~~~~~~~~y~aPE~  203 (206)
                      |+++......  ......++..|+|||.
T Consensus       408 G~a~~~~~~~~~~~~~~~~~~~y~aPE~  435 (535)
T 2h8h_A          408 GLARLIEDNEYTARQGAKFPIKWTAPEA  435 (535)
T ss_dssp             TSTTTCCCHHHHTTCSTTSCGGGSCHHH
T ss_pred             ccceecCCCceecccCCcCcccccCHHH
Confidence            9998765432  1222345678999995

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.97  E-value=1.9e-30  Score=200.05  Aligned_cols=170  Identities=18%  Similarity=0.292  Sum_probs=147.4

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      ...++|+..+.||+|++|.||+|... +++.||+|.+....  ....+.+.+|++++++++|+||+++++++..      
T Consensus        19 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~------   92 (287)
T 2wei_A           19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILED------   92 (287)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEEC------
T ss_pred             HHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeC------
Confidence            34578999999999999999999986 79999999986542  3456788999999999999999999998865      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC---CceeE
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN---LVAKI  174 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~---~~~kl  174 (206)
                       .+..++++|++++++|.+.+...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.+   +.++|
T Consensus        93 -~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dl~p~NIlv~~~~~~~~~kL  165 (287)
T 2wei_A           93 -SSSFYIVGELYTGGELFDEIIKR---KRFSEHDAARIIKQVFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKI  165 (287)
T ss_dssp             -SSEEEEEECCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSSTTCCEEE
T ss_pred             -CCeEEEEEEccCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCChhhEEEecCCCcccEEE
Confidence             56799999999999999988764   358999999999999999999999   799999999999999754   47999


Q ss_pred             ccCCccccccccccccccccCccccCCCC
Q 028629          175 SSYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       175 ~df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      +|||++.............++..|+|||.
T Consensus       166 ~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~  194 (287)
T 2wei_A          166 IDFGLSTCFQQNTKMKDRIGTAYYIAPEV  194 (287)
T ss_dssp             CSTTGGGTBCCCSSCSCHHHHHTTCCHHH
T ss_pred             eccCcceeecCCCccccccCcccccChHH
Confidence            99999988766555555678889999995

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.97  E-value=3.2e-30  Score=200.72  Aligned_cols=173  Identities=14%  Similarity=0.266  Sum_probs=134.5

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      ...++|+..+.||+|+||.||+|... ++..||+|.+....   ......+.+|+.++++++|+||+++++++..     
T Consensus        29 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----  103 (310)
T 2wqm_A           29 NTLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIE-----  103 (310)
T ss_dssp             SSGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-----
T ss_pred             ccccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEc-----
Confidence            34568999999999999999999975 79999999997533   2334578899999999999999999998876     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCC-CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGH-AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                        .+..+++||++++++|.+++.... ....+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+
T Consensus       104 --~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dl~p~NIl~~~~~~~kl~  178 (310)
T 2wqm_A          104 --DNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHS---RRVMHRDIKPANVFITATGVVKLG  178 (310)
T ss_dssp             --TTEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEEC
T ss_pred             --CCcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCcHHHEEEcCCCCEEEE
Confidence              568999999999999999886421 11458999999999999999999999   799999999999999999999999


Q ss_pred             cCCccccccccc-cccccccCccccCCCC
Q 028629          176 SYNLPLLAENAE-KVGHVTPYSGSINPTN  203 (206)
Q Consensus       176 df~~a~~~~~~~-~~~~~~~~~~y~aPE~  203 (206)
                      |||++....... ......++..|+|||.
T Consensus       179 Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  207 (310)
T 2wqm_A          179 DLGLGRFFSSKTTAAHSLVGTPYYMSPER  207 (310)
T ss_dssp             CC------------------CCSSCCHHH
T ss_pred             eccceeeecCCCccccccCCCeeEeChHH
Confidence            999998765432 2334578889999995

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=1.4e-30  Score=208.04  Aligned_cols=168  Identities=21%  Similarity=0.364  Sum_probs=130.1

Q ss_pred             CCcccceeccCcceeEEEEEEe-C-C--cEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-N-G--TFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~-~--~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .|...+.||+|+||.||+|... + +  ..||+|.+.... ....+.+.+|+.++++++||||+++++++..      ..
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~------~~  163 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR------SE  163 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECC------CS
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEc------CC
Confidence            4567789999999999999964 2 2  368899886433 3445778999999999999999999998754      24


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +..+++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++||||||+||++++++.+||+|||+
T Consensus       164 ~~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~NIll~~~~~~kL~DFG~  238 (373)
T 3c1x_A          164 GSPLVVLPYMKHGDLRNFIRNET--HNPTVKDLIGFGLQVAKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGL  238 (373)
T ss_dssp             SCCEEEEECCTTCBHHHHHHCTT--CCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC--
T ss_pred             CCeEEEEECCCCCCHHHHHhhcc--cCCCHHHHHHHHHHHHHHHHHHHH---CCEecCccchheEEECCCCCEEEeeccc
Confidence            56889999999999999997643  457899999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccc-----cccccccCccccCCCC
Q 028629          180 PLLAENAE-----KVGHVTPYSGSINPTN  203 (206)
Q Consensus       180 a~~~~~~~-----~~~~~~~~~~y~aPE~  203 (206)
                      ++......     ......++..|+|||.
T Consensus       239 a~~~~~~~~~~~~~~~~~~~~~~y~aPE~  267 (373)
T 3c1x_A          239 ARDMYDKEFDSVHNKTGAKLPVKWMALES  267 (373)
T ss_dssp             -------------------CCGGGSCHHH
T ss_pred             cccccccccccccccCCCCCcccccChHH
Confidence            98654322     1222455678999995

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.97  E-value=5.6e-31  Score=204.05  Aligned_cols=176  Identities=15%  Similarity=0.268  Sum_probs=127.6

Q ss_pred             HHHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        18 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      .+....++|...+.||+|++|.||+|... ++..||+|.+.... ....+.+.+|+.++++++|+||+++++++..    
T Consensus         9 p~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~----   84 (303)
T 2vwi_A            9 PWSINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVV----   84 (303)
T ss_dssp             ----CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEES----
T ss_pred             ccccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEee----
Confidence            34455789999999999999999999965 78999999986543 3345678889999999999999999998865    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcC-----CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEG-----HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL  170 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~  170 (206)
                         .+..+++|||+++++|.+++...     .....+++..++.++.|++.||.|||+   .+++|+||+|+||++++++
T Consensus        85 ---~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~Nil~~~~~  158 (303)
T 2vwi_A           85 ---KDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHK---NGQIHRDVKAGNILLGEDG  158 (303)
T ss_dssp             ---SSCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEECTTC
T ss_pred             ---cCCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHh---CCCCCCCCChhhEEEcCCC
Confidence               56799999999999999988641     112458999999999999999999999   7999999999999999999


Q ss_pred             ceeEccCCccccccccc------cccccccCccccCCCC
Q 028629          171 VAKISSYNLPLLAENAE------KVGHVTPYSGSINPTN  203 (206)
Q Consensus       171 ~~kl~df~~a~~~~~~~------~~~~~~~~~~y~aPE~  203 (206)
                      .++|+|||++.......      ......++..|+|||.
T Consensus       159 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  197 (303)
T 2vwi_A          159 SVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEV  197 (303)
T ss_dssp             CEEECCCHHHHHCC---------------CCCTTCCHHH
T ss_pred             CEEEEeccchheeccCCCccchhhhcccCCCccccCHHH
Confidence            99999999997654321      2233578889999995

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.97  E-value=8.4e-31  Score=205.96  Aligned_cols=176  Identities=22%  Similarity=0.339  Sum_probs=144.8

Q ss_pred             HHHHHhcCCcccceeccCcceeEEEEEEe-CC-----cEEEEEEeecCCC-ccHHHHHHHHHHHhcc-CCCceeeecccc
Q 028629           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLK-NG-----TFIAIRCLKMKKS-HSTRNFMHHIELISKL-RHCHLVSALGHC   89 (206)
Q Consensus        18 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~-----~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l-~h~~i~~~~~~~   89 (206)
                      .+....++|...+.||+|+||.||+|... ++     ..||+|.+..... ...+.+.+|+.+++++ +||||+++++++
T Consensus        40 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~  119 (333)
T 2i1m_A           40 KWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGAC  119 (333)
T ss_dssp             GGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence            34445678999999999999999999974 23     4799999975432 3446788999999999 899999999988


Q ss_pred             ccccccCCCCceEEEEEeecCCCCHHHHHhcCCC-----------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccC
Q 028629           90 FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA-----------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNN  158 (206)
Q Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-----------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~d  158 (206)
                      ..       .+..+++|||+++++|.+++.....           ...+++..++.++.|++.||.|||+   .+++|+|
T Consensus       120 ~~-------~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~D  189 (333)
T 2i1m_A          120 TH-------GGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLAS---KNCIHRD  189 (333)
T ss_dssp             CS-------SSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSC
T ss_pred             ec-------CCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhc---CCcccCC
Confidence            65       5678999999999999999864310           1357899999999999999999999   7999999


Q ss_pred             CccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCC
Q 028629          159 LKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       159 l~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                      |||+||++++++.++|+|||++.......   ......++..|+|||.
T Consensus       190 lkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  237 (333)
T 2i1m_A          190 VAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPES  237 (333)
T ss_dssp             CSGGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHH
T ss_pred             cccceEEECCCCeEEECccccccccccccceeecCCCCCCccccCHHH
Confidence            99999999999999999999998664432   2233456678999994

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.97  E-value=3.4e-30  Score=201.78  Aligned_cols=176  Identities=19%  Similarity=0.324  Sum_probs=144.6

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe--CCcEEEEEEeecCC--CccHHHHHHHHHHHhcc---CCCceeeeccccccccc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK--NGTFIAIRCLKMKK--SHSTRNFMHHIELISKL---RHCHLVSALGHCFECYF   94 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~--~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l---~h~~i~~~~~~~~~~~~   94 (206)
                      ..++|+..+.||+|+||.||+|...  ++..||+|.+....  ......+.+|+.+++.+   .|+||+++++++.....
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~   88 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   88 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence            4578999999999999999999973  68899999986543  22233566777777766   89999999998752111


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeE
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI  174 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl  174 (206)
                        ......++++|+++ ++|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|
T Consensus        89 --~~~~~~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~---~gi~H~dlkp~Nili~~~~~~kl  161 (326)
T 1blx_A           89 --DRETKLTLVFEHVD-QDLTTYLDKVPE-PGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKL  161 (326)
T ss_dssp             --SSEEEEEEEEECCS-CBHHHHHHHSCT-TCSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEE
T ss_pred             --CCCceEEEEEecCC-CCHHHHHHhccc-CCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCCHHHeEEcCCCCEEE
Confidence              12467899999998 599999876543 458999999999999999999999   79999999999999999999999


Q ss_pred             ccCCccccccccccccccccCccccCCCCC
Q 028629          175 SSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       175 ~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +|||++.............++..|+|||..
T Consensus       162 ~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~  191 (326)
T 1blx_A          162 ADFGLARIYSFQMALTSVVVTLWYRAPEVL  191 (326)
T ss_dssp             CSCCSCCCCCGGGGGCCCCCCCTTCCHHHH
T ss_pred             ecCcccccccCCCCccccccccceeCHHHH
Confidence            999999887665555567889999999953

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.97  E-value=2.4e-30  Score=198.80  Aligned_cols=169  Identities=20%  Similarity=0.363  Sum_probs=139.0

Q ss_pred             HhcCCcccceeccCcceeEEEEEEeC----CcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLKN----GTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~~----~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      ..++|...+.||+|+||.||+|...+    +..||+|.+.... ....+.+.+|+.++++++||||+++++++..     
T Consensus        10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----   84 (281)
T 3cc6_A           10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-----   84 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-----
T ss_pred             cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-----
Confidence            35789999999999999999999652    3369999987553 3345678899999999999999999998643     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                         +..+++||++++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|
T Consensus        85 ---~~~~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~kl~D  156 (281)
T 3cc6_A           85 ---EPTWIIMELYPYGELGHYLERNK--NSLKVLTLVLYSLQICKAMAYLES---INCVHRDIAVRNILVASPECVKLGD  156 (281)
T ss_dssp             ---SSCEEEEECCTTCBHHHHHHHHT--TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEEEETTEEEECC
T ss_pred             ---CCCEEEEecCCCCCHHHHHHhcc--ccCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCccceEEECCCCcEEeCc
Confidence               34689999999999999997643  358899999999999999999999   7999999999999999999999999


Q ss_pred             CCccccccccc--cccccccCccccCCCC
Q 028629          177 YNLPLLAENAE--KVGHVTPYSGSINPTN  203 (206)
Q Consensus       177 f~~a~~~~~~~--~~~~~~~~~~y~aPE~  203 (206)
                      ||++.......  ......++..|+|||.
T Consensus       157 fg~~~~~~~~~~~~~~~~~~~~~y~aPE~  185 (281)
T 3cc6_A          157 FGLSRYIEDEDYYKASVTRLPIKWMSPES  185 (281)
T ss_dssp             CCGGGCC---------CCCCCGGGCCHHH
T ss_pred             cCCCcccccccccccccCCCCcceeCchh
Confidence            99998765432  2233456778999995

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.97  E-value=3.7e-30  Score=200.75  Aligned_cols=173  Identities=16%  Similarity=0.282  Sum_probs=137.2

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccc-------
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYF-------   94 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~-------   94 (206)
                      .++|...+.||+|+||.||+|... +++.||+|.+........+.+.+|+.++++++|+||+++++++.....       
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   89 (320)
T 2i6l_A           10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG   89 (320)
T ss_dssp             TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred             CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence            578999999999999999999987 689999999986655566788999999999999999999987643110       


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec-CCCcee
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD-QNLVAK  173 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~-~~~~~k  173 (206)
                      ........+++|||++ ++|.+++..    ..+++..++.++.|++.||.|||+   .+++|+||||+||+++ +++.+|
T Consensus        90 ~~~~~~~~~lv~e~~~-~~L~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~k  161 (320)
T 2i6l_A           90 SLTELNSVYIVQEYME-TDLANVLEQ----GPLLEEHARLFMYQLLRGLKYIHS---ANVLHRDLKPANLFINTEDLVLK  161 (320)
T ss_dssp             -CCSCSEEEEEEECCS-EEHHHHHTT----CCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTTEEE
T ss_pred             cccccCceeEEeeccC-CCHHHHhhc----CCccHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEEEcCCCCeEE
Confidence            0122467899999997 599998865    358899999999999999999999   7999999999999997 567999


Q ss_pred             EccCCcccccccc----ccccccccCccccCCCC
Q 028629          174 ISSYNLPLLAENA----EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       174 l~df~~a~~~~~~----~~~~~~~~~~~y~aPE~  203 (206)
                      |+|||++......    .......++..|+|||.
T Consensus       162 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  195 (320)
T 2i6l_A          162 IGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRL  195 (320)
T ss_dssp             ECCCTTCBCC--------CCCGGGSCCTTCCHHH
T ss_pred             EccCccccccCCCcccccccccccccccccCcHH
Confidence            9999999876532    12233566888999994

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=3.3e-30  Score=202.90  Aligned_cols=169  Identities=22%  Similarity=0.391  Sum_probs=134.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-C----CcEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-N----GTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~----~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      .++|...+.||+|+||.||+|... +    +..||+|.+..... .....+.+|+.++++++|+||+++++++..     
T Consensus        43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----  117 (333)
T 1mqb_A           43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISK-----  117 (333)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS-----
T ss_pred             hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEec-----
Confidence            356777899999999999999965 2    23599999975432 334568899999999999999999998854     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                        .+..+++||++++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|
T Consensus       118 --~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kl~D  190 (333)
T 1mqb_A          118 --YKPMMIITEYMENGALDKFLREKD--GEFSVLQLVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSD  190 (333)
T ss_dssp             --SSSEEEEEECCTTEEHHHHHHHTT--TCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECC
T ss_pred             --CCCcEEEEeCCCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChheEEECCCCcEEECC
Confidence              567999999999999999997643  458999999999999999999999   7999999999999999999999999


Q ss_pred             CCcccccccccc----ccccccCccccCCCC
Q 028629          177 YNLPLLAENAEK----VGHVTPYSGSINPTN  203 (206)
Q Consensus       177 f~~a~~~~~~~~----~~~~~~~~~y~aPE~  203 (206)
                      ||++........    .....++..|+|||.
T Consensus       191 fg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  221 (333)
T 1mqb_A          191 FGLSRVLEDDPEATYTTSGGKIPIRWTAPEA  221 (333)
T ss_dssp             CCC-----------------CCCGGGSCHHH
T ss_pred             CCcchhhccccccccccCCCCccccccCchh
Confidence            999987654321    122345678999995

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.97  E-value=1e-30  Score=208.37  Aligned_cols=170  Identities=14%  Similarity=0.228  Sum_probs=124.7

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|+..+.||+|+||.||+|... +|..||+|++....  ....+.+.+|+.+++.++|+||+++++++...... ...
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~-~~~  106 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSL-EEF  106 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSG-GGC
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCcc-ccC
Confidence            578999999999999999999975 79999999986532  23456788999999999999999999987542100 112


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...++++|++ +++|.+++..    ..+++..++.++.|++.||.|||+   .+++||||||+||++++++.+||+|||+
T Consensus       107 ~~~~lv~e~~-~~~L~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~NIll~~~~~~kL~DFG~  178 (367)
T 2fst_X          107 NDVYLVTHLM-GADLNNIVKC----QKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGL  178 (367)
T ss_dssp             CCCEEEEECC-CEECC---------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECC---
T ss_pred             CeEEEEeccc-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHhhEEECCCCCEEEeeccc
Confidence            4579999999 6799888865    358999999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      ++.....  .....+|.+|+|||.
T Consensus       179 a~~~~~~--~~~~~~t~~y~aPE~  200 (367)
T 2fst_X          179 ARHTADE--MTGYVATRWYRAPEI  200 (367)
T ss_dssp             --------------CCCTTCCHHH
T ss_pred             ccccccc--CCCcCcCcCccChHH
Confidence            9876543  233688999999995

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=5.2e-30  Score=197.59  Aligned_cols=168  Identities=18%  Similarity=0.286  Sum_probs=140.6

Q ss_pred             hcCCcccc-eeccCcceeEEEEEEe---CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           23 TNNFDTSA-FMGEGSKGQMYRGRLK---NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        23 ~~~~~~~~-~lg~g~~g~v~~~~~~---~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .++|...+ .||+|+||.||+|...   ++..||+|.+.... ....+.+.+|++++++++|+||+++++++.       
T Consensus         8 ~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-------   80 (287)
T 1u59_A            8 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ-------   80 (287)
T ss_dssp             GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-------
T ss_pred             HHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEec-------
Confidence            45666666 9999999999999853   57789999997543 334567889999999999999999999873       


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                       .+..+++||++++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+||
T Consensus        81 -~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nili~~~~~~kl~Df  154 (287)
T 1u59_A           81 -AEALMLVMEMAGGGPLHKFLVGKR--EEIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDF  154 (287)
T ss_dssp             -SSSEEEEEECCTTEEHHHHHTTCT--TTSCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEEETTEEEECCC
T ss_pred             -CCCcEEEEEeCCCCCHHHHHHhCC--ccCCHHHHHHHHHHHHHHHHHHHH---CCEeeCCCchheEEEcCCCCEEECcc
Confidence             345899999999999999986543  458999999999999999999999   79999999999999999999999999


Q ss_pred             Ccccccccccc----ccccccCccccCCCC
Q 028629          178 NLPLLAENAEK----VGHVTPYSGSINPTN  203 (206)
Q Consensus       178 ~~a~~~~~~~~----~~~~~~~~~y~aPE~  203 (206)
                      |++........    .....++..|+|||.
T Consensus       155 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  184 (287)
T 1u59_A          155 GLSKALGADDSYYTARSAGKWPLKWYAPEC  184 (287)
T ss_dssp             TTCEECTTCSCEECCCCSSCCCGGGCCHHH
T ss_pred             cceeeeccCcceeeccccccccccccCHHH
Confidence            99987654321    222345778999995

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.97  E-value=3.2e-30  Score=202.55  Aligned_cols=168  Identities=19%  Similarity=0.358  Sum_probs=134.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcE----EEEEEeecC-CCccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTF----IAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~----vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      .++|+..+.||+|+||.||+|... ++..    |++|.+... .....+.+.+|+.++++++||||+++++++..     
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----   88 (327)
T 3lzb_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT-----   88 (327)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEES-----
T ss_pred             HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEec-----
Confidence            478999999999999999999975 4554    577766533 34456788999999999999999999998864     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                         +..+++++++.+++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||||+||++++++.++|+|
T Consensus        89 ---~~~~~v~~~~~~g~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIl~~~~~~~kL~D  160 (327)
T 3lzb_A           89 ---STVQLITQLMPFGCLLDYVREHK--DNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITD  160 (327)
T ss_dssp             ---SSEEEEECCCSSCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECC
T ss_pred             ---CCceEEEEecCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHhh---CCCcCCCCCHHHEEEcCCCCEEEcc
Confidence               34789999999999999997653  458999999999999999999999   7999999999999999999999999


Q ss_pred             CCccccccccccc---cccccCccccCCCC
Q 028629          177 YNLPLLAENAEKV---GHVTPYSGSINPTN  203 (206)
Q Consensus       177 f~~a~~~~~~~~~---~~~~~~~~y~aPE~  203 (206)
                      ||++.........   ....++..|+|||.
T Consensus       161 fG~a~~~~~~~~~~~~~~~~~t~~y~aPE~  190 (327)
T 3lzb_A          161 FGLAKLLGAEEKEYHAEGGKVPIKWMALES  190 (327)
T ss_dssp             TTC----------------CCCGGGSCHHH
T ss_pred             CcceeEccCccccccccCCCccccccCHHH
Confidence            9999876543322   22345667999995

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.97  E-value=2.6e-30  Score=199.66  Aligned_cols=169  Identities=18%  Similarity=0.262  Sum_probs=139.7

Q ss_pred             HHhcCCcccc-eeccCcceeEEEEEEe---CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccc
Q 028629           21 EATNNFDTSA-FMGEGSKGQMYRGRLK---NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (206)
Q Consensus        21 ~~~~~~~~~~-~lg~g~~g~v~~~~~~---~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   94 (206)
                      ...++|...+ .||+|+||.||+|...   ++..||+|.+....  ....+.+.+|+.+++.++|+||+++++++.    
T Consensus        13 ~~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~----   88 (291)
T 1xbb_A           13 LDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE----   88 (291)
T ss_dssp             CCGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEE----
T ss_pred             ecchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEC----
Confidence            3456788888 9999999999999753   47789999997543  233567899999999999999999999873    


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeE
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI  174 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl  174 (206)
                          .+..+++||++++++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|
T Consensus        89 ----~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dikp~Nil~~~~~~~kl  158 (291)
T 1xbb_A           89 ----AESWMLVMEMAELGPLNKYLQQN---RHVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKI  158 (291)
T ss_dssp             ----SSSEEEEEECCTTEEHHHHHHHC---TTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEE
T ss_pred             ----CCCcEEEEEeCCCCCHHHHHHhC---cCCCHHHHHHHHHHHHHHHHHHHh---CCeEcCCCCcceEEEeCCCcEEE
Confidence                35689999999999999999875   458999999999999999999999   79999999999999999999999


Q ss_pred             ccCCcccccccccc----ccccccCccccCCCC
Q 028629          175 SSYNLPLLAENAEK----VGHVTPYSGSINPTN  203 (206)
Q Consensus       175 ~df~~a~~~~~~~~----~~~~~~~~~y~aPE~  203 (206)
                      +|||++........    .....++..|+|||.
T Consensus       159 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  191 (291)
T 1xbb_A          159 SDFGLSKALRADENYYKAQTHGKWPVKWYAPEC  191 (291)
T ss_dssp             CCCTTCEECCTTCSEEEC----CCCGGGCCHHH
T ss_pred             ccCCcceeeccCCCcccccccCCCCceeeChHH
Confidence            99999987654322    222345678999995

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.97  E-value=5.7e-30  Score=202.64  Aligned_cols=171  Identities=17%  Similarity=0.296  Sum_probs=141.8

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|...+.||+|+||.||+|... +|+.||+|.+.... ......+.+|+.++++++|+||+++++++....+.  ...
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~--~~~   87 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFE--NFN   87 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCST--TCC
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccC--ccc
Confidence            578999999999999999999976 79999999996443 23345678999999999999999999987643221  235


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..++++|++. ++|.+++...    .+++..++.++.|++.||.|||+   .+++|+||||+||+++.++.++|+|||++
T Consensus        88 ~~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a  159 (353)
T 2b9h_A           88 EVYIIQELMQ-TDLHRVISTQ----MLSDDHIQYFIYQTLRAVKVLHG---SNVIHRDLKPSNLLINSNCDLKVCDFGLA  159 (353)
T ss_dssp             CEEEEECCCS-EEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCTTC
T ss_pred             eEEEEEeccC-ccHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEEcCCCcEEEEecccc
Confidence            7899999997 5899988763    48899999999999999999999   79999999999999999999999999999


Q ss_pred             cccccccc-----------ccccccCccccCCCC
Q 028629          181 LLAENAEK-----------VGHVTPYSGSINPTN  203 (206)
Q Consensus       181 ~~~~~~~~-----------~~~~~~~~~y~aPE~  203 (206)
                      ........           .....++..|+|||.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~  193 (353)
T 2b9h_A          160 RIIDESAADNSEPTGQQSGMVEFVATRWYRAPEV  193 (353)
T ss_dssp             EECC----------------CCCCCCGGGCCHHH
T ss_pred             cccccccccccCccccccchhhccccccccCCee
Confidence            87653221           122467889999994

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.97  E-value=5.7e-30  Score=208.01  Aligned_cols=166  Identities=17%  Similarity=0.210  Sum_probs=140.2

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhcc------CCCceeeecccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKL------RHCHLVSALGHCFECYFD   95 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~~~~   95 (206)
                      ..+|+..+.||+|+||.||+|... +++.||+|++... ......+.+|+.+++.+      .|+||+++++.+..    
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~----  170 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTF----  170 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEE----
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeeccc----
Confidence            467999999999999999999976 6899999999743 23345677788888877      56799999998865    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc--ee
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV--AK  173 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~--~k  173 (206)
                         ....+++||++. ++|.+++..... ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.  +|
T Consensus       171 ---~~~~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlKp~NILl~~~~~~~vk  242 (429)
T 3kvw_A          171 ---RNHICMTFELLS-MNLYELIKKNKF-QGFSLPLVRKFAHSILQCLDALHK---NRIIHCDLKPENILLKQQGRSGIK  242 (429)
T ss_dssp             ---TTEEEEEECCCC-CBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHH---HTEECSCCSGGGEEESSTTSCCEE
T ss_pred             ---CCeEEEEEeccC-CCHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeEEccCCCcceE
Confidence               568999999996 599998876543 458999999999999999999999   79999999999999998876  99


Q ss_pred             EccCCccccccccccccccccCccccCCCC
Q 028629          174 ISSYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       174 l~df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      |+|||++......  .....+|..|+|||.
T Consensus       243 L~DFG~a~~~~~~--~~~~~gt~~y~aPE~  270 (429)
T 3kvw_A          243 VIDFGSSCYEHQR--VYTYIQSRFYRAPEV  270 (429)
T ss_dssp             ECCCTTCEETTCC--CCSSCSCGGGCCHHH
T ss_pred             EeecccceecCCc--ccccCCCCCccChHH
Confidence            9999999765543  334688999999995

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=7.9e-30  Score=197.25  Aligned_cols=169  Identities=18%  Similarity=0.291  Sum_probs=139.2

Q ss_pred             CCcccceeccCcceeEEEEEEe-CC---cEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NG---TFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~---~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .|...+.||+|+||.||+|... ++   ..+|+|.+..... ...+.+.+|+.++++++|+||+++++++..      ..
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~------~~   95 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLP------PE   95 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECC------SS
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEec------CC
Confidence            4666789999999999999964 33   3799999875432 344678899999999999999999998864      23


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...++++|++.+++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||||+||++++++.++|+|||+
T Consensus        96 ~~~~~v~e~~~~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dikp~Nili~~~~~~kl~Dfg~  170 (298)
T 3pls_A           96 GLPHVLLPYMCHGDLLQFIRSPQ--RNPTVKDLISFGLQVARGMEYLAE---QKFVHRDLAARNCMLDESFTVKVADFGL  170 (298)
T ss_dssp             SCCEEEECCCTTCBHHHHHHCTT--CCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECCTTS
T ss_pred             CCcEEEEecccCCCHHHHHhccc--cCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCCCcEEeCcCCC
Confidence            34589999999999999997643  458899999999999999999999   7999999999999999999999999999


Q ss_pred             ccccccc-----ccccccccCccccCCCCC
Q 028629          180 PLLAENA-----EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~-----~~~~~~~~~~~y~aPE~~  204 (206)
                      +......     .......++..|+|||..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  200 (298)
T 3pls_A          171 ARDILDREYYSVQQHRHARLPVKWTALESL  200 (298)
T ss_dssp             SCTTTTGGGGCSCCSSCTTCGGGGSCHHHH
T ss_pred             cccccCCcccccccCcCCCCCccccChhhh
Confidence            9865432     223335667889999953

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.97  E-value=2.5e-30  Score=201.65  Aligned_cols=180  Identities=14%  Similarity=0.304  Sum_probs=134.3

Q ss_pred             HHHHhcCCcccceeccCcceeEEEEEEe----CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccc
Q 028629           19 LEEATNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFEC   92 (206)
Q Consensus        19 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~----~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   92 (206)
                      +....++|...+.||+|+||.||+|...    ++..||+|.+....  ....+.+.+|+.++++++|+||+++++++...
T Consensus        29 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  108 (313)
T 3brb_A           29 VVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEM  108 (313)
T ss_dssp             TBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-
T ss_pred             cccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeec
Confidence            3344578999999999999999999864    34589999987553  23346788999999999999999999988652


Q ss_pred             cccCCCCceEEEEEeecCCCCHHHHHhcC---CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC
Q 028629           93 YFDDSSVSRIFLIFEYVPNGTLRSWISEG---HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN  169 (206)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~  169 (206)
                      ..  ......++++||+++++|.+++...   .....+++..++.++.|++.||.|||+   .+++|+||||+||+++++
T Consensus       109 ~~--~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dikp~NIli~~~  183 (313)
T 3brb_A          109 SS--QGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSN---RNFLHRDLAARNCMLRDD  183 (313)
T ss_dssp             --------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHT---TTCCCCCCSGGGEEECTT
T ss_pred             cc--cCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCcceEEEcCC
Confidence            11  1123569999999999999998532   122568999999999999999999999   799999999999999999


Q ss_pred             CceeEccCCccccccccc---cccccccCccccCCCC
Q 028629          170 LVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       170 ~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                      +.++|+|||++.......   ......++..|+|||.
T Consensus       184 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  220 (313)
T 3brb_A          184 MTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIES  220 (313)
T ss_dssp             SCEEECSCSCC----------------CCGGGSCHHH
T ss_pred             CcEEEeecCcceecccccccCcccccCCCccccCchh
Confidence            999999999998765432   2233456778999985

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.97  E-value=6.6e-30  Score=203.96  Aligned_cols=170  Identities=14%  Similarity=0.225  Sum_probs=136.7

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|...+.||+|+||.||+|... +|+.||+|.+....  ....+.+.+|+.+++.++|+||+++++++...... ...
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~-~~~  119 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSL-RNF  119 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSS-TTC
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCc-ccc
Confidence            578999999999999999999976 79999999997543  22346788999999999999999999988652110 011


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...+++||++. ++|.+.+..     .+++..++.++.|++.||.|||+   .+|+|+||||+||++++++.++|+|||+
T Consensus       120 ~~~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kL~Dfg~  190 (371)
T 4exu_A          120 YDFYLVMPFMQ-TDLQKIMGM-----EFSEEKIQYLVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDCELKILDFGL  190 (371)
T ss_dssp             CCCEEEEECCC-EEHHHHTTS-----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECSTTC
T ss_pred             eeEEEEEcccc-ccHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCcCHHHeEECCCCCEEEEecCc
Confidence            23499999997 588877743     38899999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +.......  ....++.+|+|||..
T Consensus       191 a~~~~~~~--~~~~~t~~y~aPE~~  213 (371)
T 4exu_A          191 ARHADAEM--TGYVVTRWYRAPEVI  213 (371)
T ss_dssp             C----------CTTCCCTTSCHHHH
T ss_pred             ccccccCc--CCcccCccccCHHHh
Confidence            98765433  335789999999953

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.97  E-value=3.4e-30  Score=203.68  Aligned_cols=171  Identities=11%  Similarity=0.108  Sum_probs=135.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe----CCcEEEEEEeecCCCcc-----------HHHHHHHHHHHhccCCCceeeecc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKKSHS-----------TRNFMHHIELISKLRHCHLVSALG   87 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~----~~~~vaiK~~~~~~~~~-----------~~~~~~e~~~l~~l~h~~i~~~~~   87 (206)
                      .++|...+.||+|+||.||+|...    ++..+|+|.+.......           ...+.+|+..++.+.|+||+++++
T Consensus        36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~  115 (345)
T 2v62_A           36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG  115 (345)
T ss_dssp             SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred             CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence            368999999999999999999975    57789999987553221           223567888899999999999999


Q ss_pred             ccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec
Q 028629           88 HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD  167 (206)
Q Consensus        88 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~  167 (206)
                      ++....   ......+++||++ +++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||||+||+++
T Consensus       116 ~~~~~~---~~~~~~~lv~e~~-~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~  185 (345)
T 2v62_A          116 SGLTEF---KGRSYRFMVMERL-GIDLQKISGQN---GTFKKSTVLQLGIRMLDVLEYIHE---NEYVHGDIKAANLLLG  185 (345)
T ss_dssp             EEEEES---SSCEEEEEEEECE-EEEHHHHCBGG---GBCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEE
T ss_pred             cccccc---CCCcEEEEEEecc-CCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCcCHHHEEEc
Confidence            886521   2246799999999 88999998765   368999999999999999999999   7999999999999999


Q ss_pred             CCC--ceeEccCCccccccccc--------cccccccCccccCCCC
Q 028629          168 QNL--VAKISSYNLPLLAENAE--------KVGHVTPYSGSINPTN  203 (206)
Q Consensus       168 ~~~--~~kl~df~~a~~~~~~~--------~~~~~~~~~~y~aPE~  203 (206)
                      .++  .++|+|||+++......        ......++..|+|||.
T Consensus       186 ~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~  231 (345)
T 2v62_A          186 YKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDA  231 (345)
T ss_dssp             SSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHH
T ss_pred             cCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHH
Confidence            877  99999999998764332        1134578899999995

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.97  E-value=8.8e-30  Score=199.74  Aligned_cols=171  Identities=11%  Similarity=0.196  Sum_probs=125.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC-ccHHHHHHHHH-HHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-HSTRNFMHHIE-LISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~~e~~-~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|...+.||+|+||.||+|... +++.||+|.+..... .....+..|.. +++.++|+||+++++++..       .
T Consensus        21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~-------~   93 (327)
T 3aln_A           21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFR-------E   93 (327)
T ss_dssp             SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEEC-------S
T ss_pred             HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEe-------C
Confidence            578999999999999999999986 799999999975432 22344555665 7778899999999998865       5


Q ss_pred             ceEEEEEeecCCCCHHHHHhcC--CCCcccCHHHHHHHHHHHHHHHHHHhcCCCC-ceeccCCccccEEecCCCceeEcc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEG--HAWQSLTWTQRISAAIGVARGIQFLHTGIVP-GVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~-~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                      +..+++|||+++ +|.+++...  .....+++..++.++.|++.||.|||+   . +++|+||+|+||+++.++.+||+|
T Consensus        94 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~~ivH~dlkp~NIll~~~~~~kl~D  169 (327)
T 3aln_A           94 GDCWICMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKE---NLKIIHRDIKPSNILLDRSGNIKLCD  169 (327)
T ss_dssp             SEEEEEECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHH---HHSCCCSCCCGGGEEEETTTEEEECC
T ss_pred             CceEEEEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhc---cCCEeECCCCHHHEEEcCCCCEEEcc
Confidence            689999999976 888777531  111568999999999999999999999   7 999999999999999999999999


Q ss_pred             CCccccccccccccccccCccccCCCCC
Q 028629          177 YNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ||++.............++..|+|||..
T Consensus       170 fg~~~~~~~~~~~~~~~gt~~y~aPE~~  197 (327)
T 3aln_A          170 FGISGQLVDSIAKTRDAGCRPYMAPERI  197 (327)
T ss_dssp             CSSSCC----------------------
T ss_pred             CCCceecccccccccCCCCccccCceee
Confidence            9999877665555556789999999975

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.96  E-value=4.2e-30  Score=219.51  Aligned_cols=167  Identities=16%  Similarity=0.257  Sum_probs=138.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEe--CCcEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK--NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~--~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|++.+.||+|+||.||+|...  +++.||+|.+..... .....+.+|++++++++||||+++++++.....  ...
T Consensus        79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~~  156 (681)
T 2pzi_A           79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDR--HGD  156 (681)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECT--TSC
T ss_pred             CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCC--CCC
Confidence            478999999999999999999975  689999999864432 334567899999999999999999998865211  112


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...++||||+++++|.+++..     .+++..++.++.|++.||.|||+   .+|+|+||||+||+++++ .+||+|||+
T Consensus       157 ~~~~lv~E~~~g~~L~~~~~~-----~l~~~~~~~~~~qi~~aL~~lH~---~giiHrDlkp~NIll~~~-~~kl~DFG~  227 (681)
T 2pzi_A          157 PVGYIVMEYVGGQSLKRSKGQ-----KLPVAEAIAYLLEILPALSYLHS---IGLVYNDLKPENIMLTEE-QLKLIDLGA  227 (681)
T ss_dssp             EEEEEEEECCCCEECC----C-----CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECSS-CEEECCCTT
T ss_pred             ceeEEEEEeCCCCcHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHH---CCCeecccChHHeEEeCC-cEEEEeccc
Confidence            236999999999999887654     48899999999999999999999   799999999999999975 899999999


Q ss_pred             cccccccccccccccCccccCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      +......   ....||++|+|||.
T Consensus       228 a~~~~~~---~~~~gt~~y~aPE~  248 (681)
T 2pzi_A          228 VSRINSF---GYLYGTPGFQAPEI  248 (681)
T ss_dssp             CEETTCC---SCCCCCTTTSCTTH
T ss_pred             chhcccC---CccCCCccccCHHH
Confidence            9877653   44679999999995

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.96  E-value=7.4e-30  Score=204.64  Aligned_cols=170  Identities=19%  Similarity=0.232  Sum_probs=139.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccC--------CCceeeecccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLR--------HCHLVSALGHCFECY   93 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~--------h~~i~~~~~~~~~~~   93 (206)
                      .++|+..+.||+|+||.||+|... +++.||+|++... ....+.+.+|+.+++.+.        |+||+++++.+....
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~  114 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG  114 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence            578999999999999999999975 7899999999733 334567888999999995        788999999875211


Q ss_pred             ccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCC-ceeccCCccccEEecCCC--
Q 028629           94 FDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP-GVFSNNLKITDILLDQNL--  170 (206)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~-~i~h~dl~p~nil~~~~~--  170 (206)
                         ......+++||++ ++++.+.+..... ..+++..++.++.|++.||.|||+   . +|+||||||+|||++.++  
T Consensus       115 ---~~~~~~~lv~e~~-~~~l~~~~~~~~~-~~~~~~~~~~i~~qi~~aL~~lH~---~~givHrDikp~NIll~~~~~~  186 (397)
T 1wak_A          115 ---VNGTHICMVFEVL-GHHLLKWIIKSNY-QGLPLPCVKKIIQQVLQGLDYLHT---KCRIIHTDIKPENILLSVNEQY  186 (397)
T ss_dssp             ---TTEEEEEEEECCC-CCBHHHHHHHTTT-SCCCHHHHHHHHHHHHHHHHHHHH---TTCEECCCCSGGGEEECCCHHH
T ss_pred             ---CCCceEEEEEecc-CccHHHHHHhccc-CCCCHHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHeeEeccchh
Confidence               1246799999999 4566666654432 458999999999999999999999   7 999999999999999765  


Q ss_pred             -----------------------------------------------ceeEccCCccccccccccccccccCccccCCCC
Q 028629          171 -----------------------------------------------VAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       171 -----------------------------------------------~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                                                                     .++|+|||++.......  ....+|..|+|||.
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~--~~~~gt~~y~aPE~  264 (397)
T 1wak_A          187 IRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHF--TEDIQTRQYRSLEV  264 (397)
T ss_dssp             HHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCS--CSCCSCGGGCCHHH
T ss_pred             hhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccccC--ccCCCCCcccCChh
Confidence                                                           79999999998776533  33578999999995

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.96  E-value=7e-30  Score=200.35  Aligned_cols=172  Identities=22%  Similarity=0.335  Sum_probs=138.8

Q ss_pred             HhcCCcccceeccCcceeEEEEEE------eCCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRL------KNGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYF   94 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~------~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   94 (206)
                      ..++|...+.||+|+||.||+|..      .++..||+|.+.... ......+.+|+.++++++|+||+++++++..   
T Consensus        28 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---  104 (327)
T 2yfx_A           28 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQ---  104 (327)
T ss_dssp             CGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS---
T ss_pred             ChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcC---
Confidence            357899999999999999999983      257789999996442 3344578899999999999999999998865   


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCC----CcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC--
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHA----WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ--  168 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~--  168 (206)
                          ....+++|||+++++|.+++.....    ...+++..++.++.|++.||.|||+   .+++|+||+|+||+++.  
T Consensus       105 ----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~---~~i~H~dlkp~NIli~~~~  177 (327)
T 2yfx_A          105 ----SLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEE---NHFIHRDIAARNCLLTCPG  177 (327)
T ss_dssp             ----SSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESCSS
T ss_pred             ----CCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhh---CCeecCcCCHhHEEEecCC
Confidence                5568999999999999999976431    1348899999999999999999999   79999999999999994  


Q ss_pred             -CCceeEccCCccccccccc---cccccccCccccCCCC
Q 028629          169 -NLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       169 -~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                       +..++|+|||++.......   ......++..|+|||.
T Consensus       178 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  216 (327)
T 2yfx_A          178 PGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEA  216 (327)
T ss_dssp             TTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHH
T ss_pred             CcceEEECccccccccccccccccCCCcCCCcceeCHhH
Confidence             4569999999998654332   2333567888999995

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.96  E-value=1e-29  Score=214.61  Aligned_cols=160  Identities=19%  Similarity=0.295  Sum_probs=132.5

Q ss_pred             eeccCcceeEEEEEEe---CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEEE
Q 028629           31 FMGEGSKGQMYRGRLK---NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIF  106 (206)
Q Consensus        31 ~lg~g~~g~v~~~~~~---~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~  106 (206)
                      .||+|+||.||+|.+.   ++..||+|+++... ....+.+.+|++++++++|+||+++++++..        +..++||
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~--------~~~~lv~  414 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA--------EALMLVM  414 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES--------SSEEEEE
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc--------CCeEEEE
Confidence            7999999999999875   45679999997543 3456789999999999999999999998753        3589999


Q ss_pred             eecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccccc
Q 028629          107 EYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENA  186 (206)
Q Consensus       107 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~  186 (206)
                      ||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+|+||||||+|||+++++.+||+|||+++.....
T Consensus       415 E~~~~g~L~~~l~~~~--~~l~~~~~~~i~~qi~~~L~~LH~---~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~  489 (613)
T 2ozo_A          415 EMAGGGPLHKFLVGKR--EEIPVSNVAELLHQVSMGMKYLEE---KNFVHRNLAARNVLLVNRHYAKISDFGLSKALGAD  489 (613)
T ss_dssp             ECCTTCBHHHHHTTCT--TTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC--
T ss_pred             EeCCCCcHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHH---CCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCC
Confidence            9999999999986543  468999999999999999999999   79999999999999999999999999999876543


Q ss_pred             cc----ccccccCccccCCCC
Q 028629          187 EK----VGHVTPYSGSINPTN  203 (206)
Q Consensus       187 ~~----~~~~~~~~~y~aPE~  203 (206)
                      ..    .....++..|+|||.
T Consensus       490 ~~~~~~~~~~~~~~~y~APE~  510 (613)
T 2ozo_A          490 DSYYTARSAGKWPLKWYAPEC  510 (613)
T ss_dssp             ------------CCTTSCHHH
T ss_pred             CceeeeccCCCCccceeCHhh
Confidence            21    122344578999995

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.96  E-value=3.9e-30  Score=207.45  Aligned_cols=169  Identities=20%  Similarity=0.274  Sum_probs=125.6

Q ss_pred             cCCcc-cceeccCcceeEEEEEEe---CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDT-SAFMGEGSKGQMYRGRLK---NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~-~~~lg~g~~g~v~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      +.|.. ++.||+|+||.||+|...   ++..||+|.+....  ....+.+|+.++++++|+||+++++++..     ...
T Consensus        20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~~~   92 (405)
T 3rgf_A           20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLS-----HAD   92 (405)
T ss_dssp             HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEE-----TTT
T ss_pred             hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEec-----CCC
Confidence            44665 568999999999999965   57899999996432  33567889999999999999999998854     235


Q ss_pred             ceEEEEEeecCCCCHHHHHhcC------CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEe----cCC
Q 028629          100 SRIFLIFEYVPNGTLRSWISEG------HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL----DQN  169 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~------~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~----~~~  169 (206)
                      ...+++|||+.+ +|.+++...      .....+++..++.++.|++.||.|||+   .+|+||||||+|||+    +.+
T Consensus        93 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~---~~ivH~Dlkp~NIll~~~~~~~  168 (405)
T 3rgf_A           93 RKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHA---NWVLHRDLKPANILVMGEGPER  168 (405)
T ss_dssp             TEEEEEEECCSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECCSSTTT
T ss_pred             CeEEEEEeCCCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CCEeCCCcCHHHeEEecCCCCC
Confidence            679999999975 888777531      111348999999999999999999999   799999999999999    677


Q ss_pred             CceeEccCCcccccccc----ccccccccCccccCCCC
Q 028629          170 LVAKISSYNLPLLAENA----EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       170 ~~~kl~df~~a~~~~~~----~~~~~~~~~~~y~aPE~  203 (206)
                      +.+||+|||+++.....    .......+|.+|+|||.
T Consensus       169 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~  206 (405)
T 3rgf_A          169 GRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPEL  206 (405)
T ss_dssp             TCEEECCTTCCC----------------CCCTTCCHHH
T ss_pred             CcEEEEECCCceecCCCCcccccCCCceecCcccCchh
Confidence            89999999999876543    22334678999999995

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.96  E-value=3.4e-30  Score=205.59  Aligned_cols=174  Identities=7%  Similarity=-0.002  Sum_probs=123.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC---ccHHHHHHHHHHHhcc--CCCceeeeccccc---ccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIELISKL--RHCHLVSALGHCF---ECY   93 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~---~~~   93 (206)
                      ..+|...+.||+|+||.||+|... +++.||+|++.....   ...+.+.+|+.+++.+  +|||+++++..+.   +..
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~  140 (371)
T 3q60_A           61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV  140 (371)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred             ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence            456899999999999999999976 799999999986543   2344567775444444  6999888654332   100


Q ss_pred             cc--------------CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHH------HHHHHHHHHHHHHHhcCCCCc
Q 028629           94 FD--------------DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQR------ISAAIGVARGIQFLHTGIVPG  153 (206)
Q Consensus        94 ~~--------------~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~------~~~~~~i~~~l~~lH~~~~~~  153 (206)
                      ..              .......+++|||++ ++|.+++....  ..+++..+      +.++.|++.||.|||+   .+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~--~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~---~~  214 (371)
T 3q60_A          141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLD--FVYVFRGDEGILALHILTAQLIRLAANLQS---KG  214 (371)
T ss_dssp             EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHH--HSCCCCHHHHHHHHHHHHHHHHHHHHHHHH---TT
T ss_pred             ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhc--cccchhhhhhhhhHHHHHHHHHHHHHHHHH---CC
Confidence            00              001145899999998 79999997642  23445555      7788999999999999   79


Q ss_pred             eeccCCccccEEecCCCceeEccCCccccccccccccccccCccccCCCCC
Q 028629          154 VFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       154 i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |+||||||+|||+++++.+||+|||+++.......  ...++..|+|||..
T Consensus       215 ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~--~~~~t~~y~aPE~~  263 (371)
T 3q60_A          215 LVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGP--ASSVPVTYAPREFL  263 (371)
T ss_dssp             EEETTCSGGGEEECTTSCEEECCGGGEEETTCEEE--GGGSCGGGCCHHHH
T ss_pred             CccCcCCHHHEEECCCCCEEEEecceeeecCCCcc--CccCCcCCcChhhc
Confidence            99999999999999999999999999987754332  35666999999964

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.96  E-value=3.2e-30  Score=204.32  Aligned_cols=172  Identities=12%  Similarity=0.153  Sum_probs=137.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEeC---------CcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccc-
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKN---------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC-   92 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~---------~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-   92 (206)
                      .++|...+.||+|+||.||+|....         +..||+|.+...     +.+.+|++++++++|+||+++++..... 
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~  115 (352)
T 2jii_A           41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP  115 (352)
T ss_dssp             SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred             CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence            3689999999999999999999752         788999998744     3577899999999999999854322110 


Q ss_pred             --------cccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccE
Q 028629           93 --------YFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDI  164 (206)
Q Consensus        93 --------~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~ni  164 (206)
                              .+........+++|||+ +++|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||||+||
T Consensus       116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~-~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dikp~NI  190 (352)
T 2jii_A          116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPK-HVLSERSVLQVACRLLDALEFLHE---NEYVHGNVTAENI  190 (352)
T ss_dssp             TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGG-GCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCGGGE
T ss_pred             ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCc-CCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCHHHE
Confidence                    00001246789999999 8899999986522 468999999999999999999999   7999999999999


Q ss_pred             EecCCC--ceeEccCCcccccccccc--------ccccccCccccCCCCC
Q 028629          165 LLDQNL--VAKISSYNLPLLAENAEK--------VGHVTPYSGSINPTNS  204 (206)
Q Consensus       165 l~~~~~--~~kl~df~~a~~~~~~~~--------~~~~~~~~~y~aPE~~  204 (206)
                      +++.++  .++|+|||++........        .....++..|+|||..
T Consensus       191 l~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  240 (352)
T 2jii_A          191 FVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLH  240 (352)
T ss_dssp             EEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHH
T ss_pred             EEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHH
Confidence            999988  999999999987654321        1334788899999953

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.96  E-value=2.4e-29  Score=194.32  Aligned_cols=168  Identities=14%  Similarity=0.197  Sum_probs=140.8

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      .++|+..+.||+|+||.||+|... +++.||+|++.....  .+.+.+|+.+++.+.|++++..+..+..      ....
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~------~~~~   79 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGA------EGDY   79 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEE------ETTE
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccC------CCCc
Confidence            578999999999999999999975 799999999875432  3468889999999998887766655533      2567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec---CCCceeEccCC
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD---QNLVAKISSYN  178 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~---~~~~~kl~df~  178 (206)
                      .+++|||+ +++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||||+||+++   +++.++|+|||
T Consensus        80 ~~lv~e~~-~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg  153 (296)
T 3uzp_A           80 NVMVMELL-GPSLEDLFNFCS--RKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFG  153 (296)
T ss_dssp             EEEEEECC-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECCGGGTTCEEECCCT
T ss_pred             eEEEEEec-CCCHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHeEEecCCCCCeEEEeeCC
Confidence            89999999 889999997543  458999999999999999999999   7999999999999994   78899999999


Q ss_pred             cccccccccc--------ccccccCccccCCCCC
Q 028629          179 LPLLAENAEK--------VGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~~--------~~~~~~~~~y~aPE~~  204 (206)
                      ++........        .....++..|+|||..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  187 (296)
T 3uzp_A          154 LAKKYRDARTHQHIPYRENKNLTGTARYASINTH  187 (296)
T ss_dssp             TCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHH
T ss_pred             CcccccccccccccccccccccccccccCChhhh
Confidence            9987665432        2446789999999963

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.96  E-value=2.1e-29  Score=194.57  Aligned_cols=169  Identities=14%  Similarity=0.197  Sum_probs=137.1

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ..++|+..+.||+|+||.||+|... +++.||+|++.....  ...+.+|+.+++.+.|++++..+..+..      ...
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~------~~~   78 (296)
T 4hgt_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGA------EGD   78 (296)
T ss_dssp             ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEE------ETT
T ss_pred             cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeecC------CCC
Confidence            4578999999999999999999975 789999998764432  2357789999999998887777665543      256


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEe---cCCCceeEccC
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL---DQNLVAKISSY  177 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~---~~~~~~kl~df  177 (206)
                      ..+++||++ +++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||||+||++   ++++.+||+||
T Consensus        79 ~~~lv~e~~-~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIl~~~~~~~~~~kL~Df  152 (296)
T 4hgt_A           79 YNVMVMELL-GPSLEDLFNFCS--RKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDF  152 (296)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTT--SCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECCGGGTTCEEECCC
T ss_pred             ceEEEEEcc-CCCHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHeeeeccCCCCeEEEecC
Confidence            789999999 889999997543  458999999999999999999999   799999999999999   78899999999


Q ss_pred             Ccccccccccc--------ccccccCccccCCCCC
Q 028629          178 NLPLLAENAEK--------VGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~--------~~~~~~~~~y~aPE~~  204 (206)
                      |++........        .....++..|+|||..
T Consensus       153 g~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  187 (296)
T 4hgt_A          153 GLAKKYRDARTHQHIPYRENKNLTGTARYASINTH  187 (296)
T ss_dssp             TTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHH
T ss_pred             ccceeccCcccCccCCCCcccccCCCccccchHHh
Confidence            99987655422        2346789999999963

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.96  E-value=8.5e-30  Score=215.80  Aligned_cols=160  Identities=19%  Similarity=0.284  Sum_probs=132.7

Q ss_pred             ceeccCcceeEEEEEEe---CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEE
Q 028629           30 AFMGEGSKGQMYRGRLK---NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~---~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +.||+|+||.||+|.+.   ++..||+|+++...  ....+.+.+|++++++++|+||+++++++..        +..++
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~--------~~~~l  446 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA--------ESWML  446 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES--------SSEEE
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec--------CCEEE
Confidence            47999999999999764   46789999997543  2335789999999999999999999998743        45889


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      +|||+++++|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+|||+++++.+||+|||+++...
T Consensus       447 v~E~~~~g~L~~~l~~~---~~l~~~~~~~i~~qi~~~L~yLH~---~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~  520 (635)
T 4fl3_A          447 VMEMAELGPLNKYLQQN---RHVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALR  520 (635)
T ss_dssp             EEECCTTEEHHHHHHHC---TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECCTTHHHHTT
T ss_pred             EEEccCCCCHHHHHhhC---CCCCHHHHHHHHHHHHHHHHHHHH---CCEeCCCCChHhEEEeCCCCEEEEEcCCccccc
Confidence            99999999999999765   458999999999999999999999   799999999999999999999999999998765


Q ss_pred             ccc----cccccccCccccCCCC
Q 028629          185 NAE----KVGHVTPYSGSINPTN  203 (206)
Q Consensus       185 ~~~----~~~~~~~~~~y~aPE~  203 (206)
                      ...    ......++..|+|||.
T Consensus       521 ~~~~~~~~~~~~~~t~~y~APE~  543 (635)
T 4fl3_A          521 ADENYYKAQTHGKWPVKWYAPEC  543 (635)
T ss_dssp             C-------------CGGGSCHHH
T ss_pred             cCccccccccCCCCceeeeChhh
Confidence            432    1222345678999995

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.96  E-value=1.6e-29  Score=198.46  Aligned_cols=166  Identities=17%  Similarity=0.258  Sum_probs=140.6

Q ss_pred             hcCCcccceeccCcceeEEEEEE-e-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCc------eeeeccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRL-K-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH------LVSALGHCFECYF   94 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~-~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~   94 (206)
                      .++|+..+.||+|+||.||+|.. . ++..||+|++... ....+.+.+|+.+++.+.|++      ++++++++..   
T Consensus        13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~---   88 (339)
T 1z57_A           13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEH---   88 (339)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEE---
T ss_pred             cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeeccccc---
Confidence            57899999999999999999987 3 6889999998633 334567888999999997765      8888887765   


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC------
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ------  168 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~------  168 (206)
                          .+..+++||++ +++|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.      
T Consensus        89 ----~~~~~lv~e~~-~~~l~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil~~~~~~~~~  159 (339)
T 1z57_A           89 ----HGHICIVFELL-GLSTYDFIKENGF-LPFRLDHIRKMAYQICKSVNFLHS---NKLTHTDLKPENILFVQSDYTEA  159 (339)
T ss_dssp             ----TTEEEEEEECC-CCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESCCCEEEE
T ss_pred             ----CCcEEEEEcCC-CCCHHHHHHhcCC-CCCcHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHEEEeccccccc
Confidence                56899999999 7799999876543 468899999999999999999999   79999999999999987      


Q ss_pred             -------------CCceeEccCCccccccccccccccccCccccCCCC
Q 028629          169 -------------NLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       169 -------------~~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                                   ++.++|+|||++.......  ....++..|+|||.
T Consensus       160 ~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~--~~~~gt~~y~aPE~  205 (339)
T 1z57_A          160 YNPKIKRDERTLINPDIKVVDFGSATYDDEHH--STLVSTRHYRAPEV  205 (339)
T ss_dssp             EC----CEEEEESCCCEEECCCSSCEETTSCC--CSSCSCGGGCCHHH
T ss_pred             cCCccccccccccCCCceEeeCcccccCcccc--ccccCCccccChHH
Confidence                         6689999999998765432  34678999999995

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.96  E-value=8.8e-31  Score=219.15  Aligned_cols=157  Identities=11%  Similarity=0.138  Sum_probs=122.2

Q ss_pred             ccCcceeEEEEEEe-CCcEEEEEEeecCCC----------ccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCCc
Q 028629           33 GEGSKGQMYRGRLK-NGTFIAIRCLKMKKS----------HSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        33 g~g~~g~v~~~~~~-~~~~vaiK~~~~~~~----------~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ..|..|....++.. .|+.+++|++.+...          ...+++.+|+++|+++ .|+||+++++++.+       .+
T Consensus       243 ~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed-------~~  315 (569)
T 4azs_A          243 YAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGEN-------AQ  315 (569)
T ss_dssp             C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEEC-------SS
T ss_pred             ccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEE-------CC
Confidence            34444444444422 578899999975421          1235689999999999 69999999998865       67


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      .+||||||++|++|.+.+...   .+++..   .++.||+.||.|+|+   .||+||||||+|||+++++.+||+|||+|
T Consensus       316 ~~yLVMEyv~G~~L~d~i~~~---~~l~~~---~I~~QIl~AL~ylH~---~GIIHRDIKPeNILL~~dg~vKL~DFGlA  386 (569)
T 4azs_A          316 SGWLVMEKLPGRLLSDMLAAG---EEIDRE---KILGSLLRSLAALEK---QGFWHDDVRPWNVMVDARQHARLIDFGSI  386 (569)
T ss_dssp             EEEEEEECCCSEEHHHHHHTT---CCCCHH---HHHHHHHHHHHHHHH---TTCEESCCCGGGEEECTTSCEEECCCTTE
T ss_pred             EEEEEEecCCCCcHHHHHHhC---CCCCHH---HHHHHHHHHHHHHHH---CCceeccCchHhEEECCCCCEEEeecccC
Confidence            899999999999999999876   346654   478999999999999   79999999999999999999999999999


Q ss_pred             cccccc-ccccccccCccccCCCCCC
Q 028629          181 LLAENA-EKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~y~aPE~~~  205 (206)
                      +..... ......+||++|||||...
T Consensus       387 r~~~~~~~~~~t~vGTp~YmAPE~l~  412 (569)
T 4azs_A          387 VTTPQDCSWPTNLVQSFFVFVNELFA  412 (569)
T ss_dssp             ESCC---CCSHHHHHHHHHHHHHHC-
T ss_pred             eeCCCCCccccCceechhhccHHHhC
Confidence            876543 3455578999999999753

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.96  E-value=2.9e-30  Score=201.14  Aligned_cols=171  Identities=19%  Similarity=0.237  Sum_probs=136.7

Q ss_pred             HHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc------cHHHHHHHHHHHhcc----CCCceeeecc
Q 028629           19 LEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH------STRNFMHHIELISKL----RHCHLVSALG   87 (206)
Q Consensus        19 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~------~~~~~~~e~~~l~~l----~h~~i~~~~~   87 (206)
                      .....++|+..+.||+|+||.||+|... +++.||+|.+......      ....+.+|+..+.++    .|+||+++++
T Consensus        26 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~  105 (312)
T 2iwi_A           26 REAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLD  105 (312)
T ss_dssp             -------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEE
T ss_pred             hhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEE
Confidence            3455688999999999999999999975 7899999999754321      223456689999888    8999999999


Q ss_pred             ccccccccCCCCceEEEEEee-cCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEe
Q 028629           88 HCFECYFDDSSVSRIFLIFEY-VPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL  166 (206)
Q Consensus        88 ~~~~~~~~~~~~~~~~lv~e~-~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~  166 (206)
                      ++..       .+..++++|+ +.+++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||++
T Consensus       106 ~~~~-------~~~~~~v~e~~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Nil~  172 (312)
T 2iwi_A          106 WFET-------QEGFMLVLERPLPAQDLFDYITEK---GPLGEGPSRCFFGQVVAAIQHCHS---RGVVHRDIKDENILI  172 (312)
T ss_dssp             EC------------CEEEEECCSSEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---HTEECCCCSGGGEEE
T ss_pred             EEec-------CCeEEEEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChhhEEE
Confidence            8865       5678999999 7888999999765   358999999999999999999999   799999999999999


Q ss_pred             c-CCCceeEccCCccccccccccccccccCccccCCCC
Q 028629          167 D-QNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       167 ~-~~~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      + +++.++|+|||++....... .....++..|+|||.
T Consensus       173 ~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~y~aPE~  209 (312)
T 2iwi_A          173 DLRRGCAKLIDFGSGALLHDEP-YTDFDGTRVYSPPEW  209 (312)
T ss_dssp             ETTTTEEEECCCSSCEECCSSC-BCCCCSCTTTSCHHH
T ss_pred             eCCCCeEEEEEcchhhhcccCc-ccccCCcccccCcee
Confidence            9 88999999999998776543 334678899999995

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.96  E-value=5.9e-30  Score=200.38  Aligned_cols=173  Identities=18%  Similarity=0.222  Sum_probs=143.9

Q ss_pred             HHHHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc------cHHHHHHHHHHHhccC--CCceeeecc
Q 028629           17 EELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH------STRNFMHHIELISKLR--HCHLVSALG   87 (206)
Q Consensus        17 ~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~------~~~~~~~e~~~l~~l~--h~~i~~~~~   87 (206)
                      .+.....++|+..+.||+|+||.||+|... ++..||+|.+......      ....+.+|+.+++++.  |+|++++++
T Consensus        36 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~  115 (320)
T 3a99_A           36 KEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLD  115 (320)
T ss_dssp             ----CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEE
T ss_pred             cccCCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEE
Confidence            344455688999999999999999999975 7899999999754321      2244667999999996  599999999


Q ss_pred             ccccccccCCCCceEEEEEeecCC-CCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEe
Q 028629           88 HCFECYFDDSSVSRIFLIFEYVPN-GTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL  166 (206)
Q Consensus        88 ~~~~~~~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~  166 (206)
                      ++..       .+..++++|++.+ ++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||++
T Consensus       116 ~~~~-------~~~~~lv~e~~~~~~~L~~~l~~~---~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NIll  182 (320)
T 3a99_A          116 WFER-------PDSFVLILERPEPVQDLFDFITER---GALQEELARSFFWQVLEAVRHCHN---CGVLHRDIKDENILI  182 (320)
T ss_dssp             EEEC-------SSEEEEEEECCSSEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEE
T ss_pred             EEec-------CCcEEEEEEcCCCCccHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHH---CCcEeCCCCHHHEEE
Confidence            8865       5679999999976 7999998765   458899999999999999999999   799999999999999


Q ss_pred             c-CCCceeEccCCccccccccccccccccCccccCCCC
Q 028629          167 D-QNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       167 ~-~~~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      + +++.+||+|||++....... .....++..|+|||.
T Consensus       183 ~~~~~~~kL~Dfg~~~~~~~~~-~~~~~gt~~y~aPE~  219 (320)
T 3a99_A          183 DLNRGELKLIDFGSGALLKDTV-YTDFDGTRVYSPPEW  219 (320)
T ss_dssp             ETTTTEEEECCCTTCEECCSSC-BCCCCSCGGGSCHHH
T ss_pred             eCCCCCEEEeeCcccccccccc-ccCCCCCccCCChHH
Confidence            9 78999999999998776543 334678999999995

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.96  E-value=1.8e-29  Score=200.10  Aligned_cols=169  Identities=14%  Similarity=0.235  Sum_probs=136.3

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|...+.||+|+||.||+|... +|+.||+|.+....  ....+.+.+|+.+++.++|+||+++++++...... ...
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~-~~~  101 (353)
T 3coi_A           23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSL-RNF  101 (353)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSG-GGC
T ss_pred             CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccc-ccc
Confidence            578999999999999999999976 79999999997543  22346788999999999999999999987641100 001


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...+++||++. ++|.+++..     .+++..++.++.|++.||.|||+   .+++|+||+|+||++++++.++|+|||+
T Consensus       102 ~~~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~al~~LH~---~~ivH~dlkp~NIl~~~~~~~kl~Dfg~  172 (353)
T 3coi_A          102 YDFYLVMPFMQ-TDLQKIMGL-----KFSEEKIQYLVYQMLKGLKYIHS---AGVVHRDLKPGNLAVNEDCELKILDFGL  172 (353)
T ss_dssp             CCCEEEEECCS-EEGGGTTTS-----CCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGGGEEECTTCCEEECSTTC
T ss_pred             eeEEEEecccc-CCHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEeECCCCcEEEeeccc
Confidence            24699999997 488877643     38899999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      +......  .....++..|+|||.
T Consensus       173 ~~~~~~~--~~~~~~t~~y~aPE~  194 (353)
T 3coi_A          173 ARHADAE--MTGYVVTRWYRAPEV  194 (353)
T ss_dssp             TTC----------CCSBCCSCHHH
T ss_pred             ccCCCCC--ccccccCcCcCCHHH
Confidence            9876543  233578899999995

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.96  E-value=1.3e-29  Score=195.37  Aligned_cols=168  Identities=20%  Similarity=0.344  Sum_probs=132.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe--CCc--EEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK--NGT--FIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~--~~~--~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      .++|+..+.||+|+||.||+|.+.  ++.  .||+|.+....   ....+.+.+|+.++++++|+||+++++++..    
T Consensus        17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~----   92 (291)
T 1u46_A           17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT----   92 (291)
T ss_dssp             GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred             hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcc----
Confidence            468999999999999999999964  333  68999886542   3345678899999999999999999998864    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                          ...++++|++++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.++|+
T Consensus        93 ----~~~~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~Nili~~~~~~kl~  163 (291)
T 1u46_A           93 ----PPMKMVTELAPLGSLLDRLRKHQ--GHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIG  163 (291)
T ss_dssp             ----SSCEEEEECCTTCBHHHHHHHHG--GGSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEEC
T ss_pred             ----CCceeeEecccCCCHHHHHHhcc--CCcCHHHHHHHHHHHHHHHHHHHh---CCcccCCCchheEEEcCCCCEEEc
Confidence                24789999999999999987642  458899999999999999999999   799999999999999999999999


Q ss_pred             cCCccccccccc----cccccccCccccCCCC
Q 028629          176 SYNLPLLAENAE----KVGHVTPYSGSINPTN  203 (206)
Q Consensus       176 df~~a~~~~~~~----~~~~~~~~~~y~aPE~  203 (206)
                      |||++.......    ......++..|+|||.
T Consensus       164 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  195 (291)
T 1u46_A          164 DFGLMRALPQNDDHYVMQEHRKVPFAWCAPES  195 (291)
T ss_dssp             CCTTCEECCC-CCEEEC-----CCGGGCCHHH
T ss_pred             cccccccccccccchhhhccCCCCceeeCchh
Confidence            999998765432    2223456678999995

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.96  E-value=6.5e-30  Score=215.64  Aligned_cols=180  Identities=17%  Similarity=0.204  Sum_probs=147.7

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ..++|+..+.||+|+||.||+|... +|..||+|++.... ....+.+.+|++++++++||||+++++++...... ...
T Consensus        12 ~~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~-~~~   90 (676)
T 3qa8_A           12 TCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKL-APN   90 (676)
T ss_dssp             -----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCC-CTT
T ss_pred             CCCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccc-cCC
Confidence            3578999999999999999999975 78999999987542 33356788999999999999999999987542211 124


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc---eeEcc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV---AKISS  176 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~---~kl~d  176 (206)
                      +..+++|||+++++|.+++........+++..++.++.|++.||.|||+   .+++|+||+|+||+++.++.   ++|+|
T Consensus        91 ~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs---~gIVHrDLKP~NILl~~~g~~~~vKL~D  167 (676)
T 3qa8_A           91 DLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHE---NRIIHRDLKPENIVLQPGPQRLIHKIID  167 (676)
T ss_dssp             SSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHH---TTBCCCCCCSTTEEEECCSSSCEEEECS
T ss_pred             CeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCHHHeEeecCCCceeEEEcc
Confidence            5689999999999999999875433468899999999999999999999   79999999999999996654   89999


Q ss_pred             CCccccccccccccccccCccccCCCCCC
Q 028629          177 YNLPLLAENAEKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       177 f~~a~~~~~~~~~~~~~~~~~y~aPE~~~  205 (206)
                      ||++.............++.+|+|||...
T Consensus       168 FG~a~~~~~~~~~~~~~gt~~Y~APE~l~  196 (676)
T 3qa8_A          168 LGYAKELDQGELCTEFVGTLQYLAPELLE  196 (676)
T ss_dssp             CCCCCBTTSCCCCCCCCSCCTTCSSCSSC
T ss_pred             cccccccccccccccccCCcccCChHHhc
Confidence            99999887766666678999999999753

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.96  E-value=7.9e-30  Score=198.86  Aligned_cols=173  Identities=13%  Similarity=0.248  Sum_probs=140.0

Q ss_pred             HHHHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCC--CccHHHHHHHHHHHhccC--CCceeeeccccccc
Q 028629           17 EELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLR--HCHLVSALGHCFEC   92 (206)
Q Consensus        17 ~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~--h~~i~~~~~~~~~~   92 (206)
                      ..+....++|+..+.||+|+||.||++...++..||+|.+....  ....+.+.+|+.+++++.  |+||+++++++.. 
T Consensus        21 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~-   99 (313)
T 3cek_A           21 QSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT-   99 (313)
T ss_dssp             CEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEEC-
T ss_pred             eeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeec-
Confidence            33334467899999999999999999998789999999997543  233467889999999997  5999999998865 


Q ss_pred             cccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCce
Q 028629           93 YFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVA  172 (206)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~  172 (206)
                            .+..+++|| +.+++|.+++...   ..+++..++.++.|++.||.|||+   .+++|+||+|+||++++ +.+
T Consensus       100 ------~~~~~lv~e-~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~~~-~~~  165 (313)
T 3cek_A          100 ------DQYIYMVME-CGNIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIVD-GML  165 (313)
T ss_dssp             ------SSEEEEEEC-CCSEEHHHHHHHC---SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEEET-TEE
T ss_pred             ------CCEEEEEEe-cCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcccEEEEC-CeE
Confidence                  567999999 5577999999876   458899999999999999999999   79999999999999964 899


Q ss_pred             eEccCCccccccccc---cccccccCccccCCCCC
Q 028629          173 KISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       173 kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      +|+|||++.......   ......++..|+|||..
T Consensus       166 kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  200 (313)
T 3cek_A          166 KLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAI  200 (313)
T ss_dssp             EECCCSSSCC--------------CCGGGCCHHHH
T ss_pred             EEeeccccccccCccccccccCCCCCCCcCCHHHH
Confidence            999999998765432   22345789999999963

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.96  E-value=8e-29  Score=195.24  Aligned_cols=170  Identities=18%  Similarity=0.213  Sum_probs=121.8

Q ss_pred             hcCCcccc-eeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSA-FMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~-~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|...+ .||+|+||.||+|... +++.||+|++....    ....+....++.+.|+||+++++++....   ....
T Consensus        27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~e~~~~~~~~~h~~i~~~~~~~~~~~---~~~~   99 (336)
T 3fhr_A           27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP----KARQEVDHHWQASGGPHIVCILDVYENMH---HGKR   99 (336)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH----HHHHHHHHHHHHTTSTTBCCEEEEEEEEE---TTEE
T ss_pred             cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH----HHHHHHHHHHHhcCCCChHHHHHHHhhcc---CCCc
Confidence            67899855 6999999999999987 79999999986431    11222233456668999999999875411   1245


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC---CCceeEccC
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---NLVAKISSY  177 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~---~~~~kl~df  177 (206)
                      ..+++|||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.   ++.++|+||
T Consensus       100 ~~~lv~e~~~gg~L~~~l~~~~~-~~l~~~~~~~i~~ql~~~l~~LH~---~~ivH~dlkp~NIll~~~~~~~~~kl~Df  175 (336)
T 3fhr_A          100 CLLIIMECMEGGELFSRIQERGD-QAFTEREAAEIMRDIGTAIQFLHS---HNIAHRDVKPENLLYTSKEKDAVLKLTDF  175 (336)
T ss_dssp             EEEEEEECCTTEEHHHHHHTC-C-CCCBHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEESCSSTTCCEEECCC
T ss_pred             eEEEEEeccCCCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEEecCCCceEEEecc
Confidence            68999999999999999986543 468999999999999999999999   79999999999999986   456999999


Q ss_pred             CccccccccccccccccCccccCCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |++....... .....++..|+|||..
T Consensus       176 g~~~~~~~~~-~~~~~~t~~y~aPE~~  201 (336)
T 3fhr_A          176 GFAKETTQNA-LQTPCYTPYYVAPEVL  201 (336)
T ss_dssp             TTCEEC---------------------
T ss_pred             ccceeccccc-cccCCCCcCccChhhh
Confidence            9998765432 3346789999999975

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.96  E-value=9.5e-29  Score=203.20  Aligned_cols=167  Identities=14%  Similarity=0.195  Sum_probs=137.3

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCc-eeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH-LVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|++.+.||+|+||.||+|... +++.||+|++.....  ...+..|+++++.+.|.+ +..+..++..       ..
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~-------~~   76 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVE-------GD   76 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEE-------TT
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEee-------CC
Confidence            578999999999999999999975 799999998875432  234778999999998754 4444444332       56


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEe---cCCCceeEccC
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL---DQNLVAKISSY  177 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~---~~~~~~kl~df  177 (206)
                      ..+++|||+ +++|.+++....  ..+++..++.++.||+.||.|||+   .+|+|+||||+||||   ++++.+||+||
T Consensus        77 ~~~lvme~~-g~sL~~ll~~~~--~~l~~~~~~~i~~qi~~aL~yLH~---~gIvHrDIKP~NILl~~~~~~~~vkL~DF  150 (483)
T 3sv0_A           77 YNVLVMDLL-GPSLEDLFNFCS--RKLSLKTVLMLADQMINRVEFVHS---KSFLHRDIKPDNFLMGLGRRANQVYIIDF  150 (483)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECCGGGTTCEEECCC
T ss_pred             EEEEEEECC-CCCHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccCcceEEEecCCCCCeEEEEeC
Confidence            789999999 889999997543  458999999999999999999999   799999999999999   57899999999


Q ss_pred             Ccccccccccc--------ccccccCccccCCCCC
Q 028629          178 NLPLLAENAEK--------VGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~--------~~~~~~~~~y~aPE~~  204 (206)
                      |+++.......        .....++..|+|||..
T Consensus       151 Gla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~  185 (483)
T 3sv0_A          151 GLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTH  185 (483)
T ss_dssp             TTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHH
T ss_pred             CcceeccCCccccccccccccccCCCccccCHHHh
Confidence            99987655432        2256789999999963

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.96  E-value=4.3e-29  Score=212.21  Aligned_cols=170  Identities=18%  Similarity=0.299  Sum_probs=139.0

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe----CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~----~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      ...++|...+.||+|+||.||+|...    .+..||+|.+.... ....+.+.+|+.++++++||||+++++++.     
T Consensus       387 i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-----  461 (656)
T 2j0j_A          387 IQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-----  461 (656)
T ss_dssp             CCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----
T ss_pred             cccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-----
Confidence            34567888999999999999999974    24578999886543 233467889999999999999999999873     


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                         .+..+++|||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+||+
T Consensus       462 ---~~~~~lv~E~~~~g~L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDikp~NILl~~~~~vkL~  533 (656)
T 2j0j_A          462 ---ENPVWIIMELCTLGELRSFLQVRK--FSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLG  533 (656)
T ss_dssp             ---SSSCEEEEECCTTCBHHHHHHHTT--TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEEC
T ss_pred             ---cCceEEEEEcCCCCcHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHh---CCccccccchHhEEEeCCCCEEEE
Confidence               345899999999999999997653  358899999999999999999999   799999999999999999999999


Q ss_pred             cCCccccccccc--cccccccCccccCCCC
Q 028629          176 SYNLPLLAENAE--KVGHVTPYSGSINPTN  203 (206)
Q Consensus       176 df~~a~~~~~~~--~~~~~~~~~~y~aPE~  203 (206)
                      |||+++......  ......++..|+|||.
T Consensus       534 DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~  563 (656)
T 2j0j_A          534 DFGLSRYMEDSTYYKASKGKLPIKWMAPES  563 (656)
T ss_dssp             CCCCCCSCCC----------CCGGGCCHHH
T ss_pred             ecCCCeecCCCcceeccCCCCCcceeCHHH
Confidence            999998765432  2223456678999995

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.96  E-value=3.4e-29  Score=195.32  Aligned_cols=170  Identities=15%  Similarity=0.284  Sum_probs=124.6

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc-cH-HHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH-ST-RNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~-~~-~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ..++|...+.||+|+||.||+|... +++.||+|.+...... .. +.+.++..+++.++|+||+++++++..       
T Consensus        23 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~-------   95 (318)
T 2dyl_A           23 EINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFIT-------   95 (318)
T ss_dssp             CGGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-------
T ss_pred             hhccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEec-------
Confidence            4578999999999999999999986 7999999999755322 22 233445557888899999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCC-ceeccCCccccEEecCCCceeEccC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP-GVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~-~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      .+..+++|||+ ++.+..+.....  ..+++..++.++.|++.||.|||+   . +++|+||+|+||+++.++.++|+||
T Consensus        96 ~~~~~lv~e~~-~~~~~~l~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~---~~~i~H~dlkp~Nil~~~~~~~kl~df  169 (318)
T 2dyl_A           96 NTDVFIAMELM-GTCAEKLKKRMQ--GPIPERILGKMTVAIVKALYYLKE---KHGVIHRDVKPSNILLDERGQIKLCDF  169 (318)
T ss_dssp             SSEEEEEECCC-SEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCGGGEEECTTSCEEECCC
T ss_pred             CCcEEEEEecc-CCcHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHh---hCCEEeCCCCHHHEEECCCCCEEEEEC
Confidence            56899999999 546665554322  458999999999999999999998   5 9999999999999999999999999


Q ss_pred             CccccccccccccccccCccccCCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |++.............++..|+|||..
T Consensus       170 g~~~~~~~~~~~~~~~~~~~y~aPE~~  196 (318)
T 2dyl_A          170 GISGRLVDDKAKDRSAGCAAYMAPERI  196 (318)
T ss_dssp             TTC--------------CCTTCCHHHH
T ss_pred             CCchhccCCccccccCCCccccChhhc
Confidence            999877665555556889999999964

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.96  E-value=7.7e-29  Score=198.48  Aligned_cols=173  Identities=17%  Similarity=0.216  Sum_probs=140.3

Q ss_pred             HHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccC-CC-----ceeeecccccc
Q 028629           19 LEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HC-----HLVSALGHCFE   91 (206)
Q Consensus        19 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~-----~i~~~~~~~~~   91 (206)
                      .....++|+..+.||+|+||.||+|... +++.||+|++... ......+..|+.+++.+. |+     +++++.+++..
T Consensus        49 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~  127 (382)
T 2vx3_A           49 GEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMF  127 (382)
T ss_dssp             TCEETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEE
T ss_pred             CCEeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeecc
Confidence            3344688999999999999999999976 7889999999733 333456777888888885 44     37888887765


Q ss_pred             ccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec--CC
Q 028629           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD--QN  169 (206)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~--~~  169 (206)
                             .+..+++||++++ +|.+++..... ..+++..+..++.|++.||.|||. +..+|+||||||+|||++  .+
T Consensus       128 -------~~~~~lv~e~~~~-~L~~~l~~~~~-~~~~~~~~~~i~~qi~~al~~lH~-~~~~ivHrDlkp~NIll~~~~~  197 (382)
T 2vx3_A          128 -------RNHLCLVFEMLSY-NLYDLLRNTNF-RGVSLNLTRKFAQQMCTALLFLAT-PELSIIHCDLKPENILLCNPKR  197 (382)
T ss_dssp             -------TTEEEEEEECCCC-BHHHHHHHTTT-SCCCHHHHHHHHHHHHHHHHHHTS-TTTCEECCCCSGGGEEESSTTS
T ss_pred             -------CCceEEEEecCCC-CHHHHHhhcCc-CCCCHHHHHHHHHHHHHHHHHhcc-CCCCEEcCCCCcccEEEecCCC
Confidence                   5689999999965 99999876543 458999999999999999999994 116999999999999995  46


Q ss_pred             CceeEccCCccccccccccccccccCccccCCCCC
Q 028629          170 LVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       170 ~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +.+||+|||++......  .....+|+.|+|||..
T Consensus       198 ~~~kL~DFG~a~~~~~~--~~~~~~t~~y~aPE~~  230 (382)
T 2vx3_A          198 SAIKIVDFGSSCQLGQR--IYQYIQSRFYRSPEVL  230 (382)
T ss_dssp             CCEEECCCTTCEETTCC--CCSSCSCGGGCCHHHH
T ss_pred             CcEEEEeccCceecccc--cccccCCccccChHHH
Confidence            78999999999877543  2346889999999953

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.96  E-value=4.8e-29  Score=198.59  Aligned_cols=170  Identities=14%  Similarity=0.215  Sum_probs=140.7

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccC-----------CCceeeeccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-----------HCHLVSALGHCF   90 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-----------h~~i~~~~~~~~   90 (206)
                      .++|...+.||+|+||.||+|... +++.||+|++... ......+.+|+.+++++.           |+||+++++++.
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~   96 (373)
T 1q8y_A           18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN   96 (373)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred             CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence            468999999999999999999975 7899999999733 334566788999998886           789999999886


Q ss_pred             cccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCC-ceeccCCccccEEec--
Q 028629           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP-GVFSNNLKITDILLD--  167 (206)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~-~i~h~dl~p~nil~~--  167 (206)
                      ...   ......+++||++ +++|.+++..... ..+++..++.++.|++.||.|||+   . +|+|+||||+||+++  
T Consensus        97 ~~~---~~~~~~~lv~e~~-~~~L~~~~~~~~~-~~~~~~~~~~i~~qi~~aL~~lH~---~~~ivH~Dikp~NIll~~~  168 (373)
T 1q8y_A           97 HKG---PNGVHVVMVFEVL-GENLLALIKKYEH-RGIPLIYVKQISKQLLLGLDYMHR---RCGIIHTDIKPENVLMEIV  168 (373)
T ss_dssp             EEE---TTEEEEEEEECCC-CEEHHHHHHHTTT-SCCCHHHHHHHHHHHHHHHHHHHH---TTCEECSCCSGGGEEEEEE
T ss_pred             ccC---CCCceEEEEEecC-CCCHHHHHHHhhc-cCCcHHHHHHHHHHHHHHHHHHHh---cCCEEecCCChHHeEEecc
Confidence            411   1234789999999 7899999976433 458899999999999999999999   7 999999999999995  


Q ss_pred             ----CCCceeEccCCccccccccccccccccCccccCCCC
Q 028629          168 ----QNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       168 ----~~~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                          ..+.++|+|||++.......  ....+|..|+|||.
T Consensus       169 ~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~t~~y~aPE~  206 (373)
T 1q8y_A          169 DSPENLIQIKIADLGNACWYDEHY--TNSIQTREYRSPEV  206 (373)
T ss_dssp             ETTTTEEEEEECCCTTCEETTBCC--CSCCSCGGGCCHHH
T ss_pred             CCCcCcceEEEcccccccccCCCC--CCCCCCccccCcHH
Confidence                34589999999998776533  33578999999995

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.96  E-value=1e-28  Score=195.18  Aligned_cols=167  Identities=14%  Similarity=0.219  Sum_probs=137.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CC-cEEEEEEeecCCCccHHHHHHHHHHHhccCCCc------eeeeccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NG-TFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH------LVSALGHCFECYF   94 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~-~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~   94 (206)
                      .++|+..+.||+|+||.||+|... ++ ..||+|++... ....+.+.+|+.+++.+.|++      ++.+.+++..   
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~---   93 (355)
T 2eu9_A           18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNF---   93 (355)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEE---
T ss_pred             cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeee---
Confidence            578999999999999999999975 44 68999999733 334567788999999998766      7777776654   


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEe--------
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL--------  166 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~--------  166 (206)
                          .+..+++||++ ++++.+.+..... ..+++..++.++.|++.||.|||+   .+|+|+||||+||++        
T Consensus        94 ----~~~~~lv~e~~-~~~l~~~l~~~~~-~~~~~~~~~~i~~qi~~~L~~lH~---~~ivH~Dlkp~NIll~~~~~~~~  164 (355)
T 2eu9_A           94 ----HGHMCIAFELL-GKNTFEFLKENNF-QPYPLPHVRHMAYQLCHALRFLHE---NQLTHTDLKPENILFVNSEFETL  164 (355)
T ss_dssp             ----TTEEEEEEECC-CCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEESCCCEEEE
T ss_pred             ----CCeEEEEEecc-CCChHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEEeccccccc
Confidence                56899999999 5577777765432 468999999999999999999999   799999999999999        


Q ss_pred             -----------cCCCceeEccCCccccccccccccccccCccccCCCCC
Q 028629          167 -----------DQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       167 -----------~~~~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                                 +.++.++|+|||++.......  ....+|..|+|||..
T Consensus       165 ~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~--~~~~gt~~y~aPE~~  211 (355)
T 2eu9_A          165 YNEHKSCEEKSVKNTSIRVADFGSATFDHEHH--TTIVATRHYRPPEVI  211 (355)
T ss_dssp             ECCC-CCCEEEESCCCEEECCCTTCEETTSCC--CSSCSCGGGCCHHHH
T ss_pred             ccccccccccccCCCcEEEeecCccccccccc--cCCcCCCcccCCeee
Confidence                       567899999999998765433  346889999999953

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.96  E-value=5.4e-30  Score=200.04  Aligned_cols=176  Identities=20%  Similarity=0.380  Sum_probs=141.5

Q ss_pred             eCHHHHHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeecccccc
Q 028629           14 FSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFE   91 (206)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   91 (206)
                      ....++....++|+..+.||+|+||.||+|...+  .+++|.+....  ....+.+.+|+.++++++|+||+++++++..
T Consensus        23 ~~~~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~  100 (319)
T 2y4i_B           23 IFLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMS  100 (319)
T ss_dssp             CCGGGSSSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEEC
T ss_pred             cccccccCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEec
Confidence            3445566667899999999999999999998753  48999987543  2333556779999999999999999998865


Q ss_pred             ccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc
Q 028629           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV  171 (206)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~  171 (206)
                             .+..++++||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+++|+||+|+||+++ ++.
T Consensus       101 -------~~~~~iv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dlkp~NIl~~-~~~  167 (319)
T 2y4i_B          101 -------PPHLAIITSLCKGRTLYSVVRDAK--IVLDVNKTRQIAQEIVKGMGYLHA---KGILHKDLKSKNVFYD-NGK  167 (319)
T ss_dssp             -------SSCEEEECBCCCSEEHHHHTTSSC--CCCCSHHHHHHHHHHHHHHHHHHH---TTCCCCCCCSTTEEEC---C
T ss_pred             -------CCceEEEeecccCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHh---CCccccCCChhhEEEe-CCC
Confidence                   567999999999999999997643  458899999999999999999999   7999999999999998 679


Q ss_pred             eeEccCCcccccccc------ccccccccCccccCCCCC
Q 028629          172 AKISSYNLPLLAENA------EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       172 ~kl~df~~a~~~~~~------~~~~~~~~~~~y~aPE~~  204 (206)
                      ++|+|||++......      .......++..|+|||..
T Consensus       168 ~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~  206 (319)
T 2y4i_B          168 VVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEII  206 (319)
T ss_dssp             CEECCCSCCC----------CCSCBCCSGGGGTSCHHHH
T ss_pred             EEEeecCCccccccccccccccccccCCCcccccChHHh
Confidence            999999998765321      223334688899999953

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.96  E-value=8.4e-29  Score=201.42  Aligned_cols=167  Identities=17%  Similarity=0.200  Sum_probs=126.6

Q ss_pred             cCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCCceE
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      +.|...+.||+|+||.||.+...+|+.||+|++...   ..+.+.+|+.+++++ +||||+++++++.+       ....
T Consensus        15 ~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~-------~~~~   84 (434)
T 2rio_A           15 NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETT-------DRFL   84 (434)
T ss_dssp             SCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEEC-------SSEE
T ss_pred             heeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEec-------CCeE
Confidence            345567889999999998765557999999998743   345678899999887 89999999988754       5689


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCc----ccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC---------
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQ----SLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN---------  169 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~---------  169 (206)
                      +++||++. ++|.+++.......    ..++..++.++.|++.||.|||+   .+|+||||||+|||++.+         
T Consensus        85 ~lv~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDLkp~NILl~~~~~~~~~~~~  160 (434)
T 2rio_A           85 YIALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHS---LKIIHRDLKPQNILVSTSSRFTADQQT  160 (434)
T ss_dssp             EEEECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEECCHHHHSCCTT
T ss_pred             EEEEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHH---CCccccCCChHhEEEecCccccccccc
Confidence            99999996 59999997653211    11233457799999999999999   799999999999999754         


Q ss_pred             ----CceeEccCCcccccccccc-----ccccccCccccCCCCC
Q 028629          170 ----LVAKISSYNLPLLAENAEK-----VGHVTPYSGSINPTNS  204 (206)
Q Consensus       170 ----~~~kl~df~~a~~~~~~~~-----~~~~~~~~~y~aPE~~  204 (206)
                          +.++|+|||++........     .....+|.+|+|||..
T Consensus       161 ~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  204 (434)
T 2rio_A          161 GAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELL  204 (434)
T ss_dssp             CCCSCEEEECCCTTCEECCC--------------CCTTSCHHHH
T ss_pred             CCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHh
Confidence                4899999999987765321     2345789999999953

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.95  E-value=1.5e-28  Score=199.71  Aligned_cols=166  Identities=16%  Similarity=0.216  Sum_probs=129.6

Q ss_pred             cCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCCceE
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      .+|...+.||+|+||.|+.....+++.||+|++.....   ..+.+|+++++.+ +||||+++++++.+       ....
T Consensus        24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~-------~~~~   93 (432)
T 3p23_A           24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKD-------RQFQ   93 (432)
T ss_dssp             EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEE-------TTEE
T ss_pred             EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEec-------CCEE
Confidence            56889999999999997654455799999999964432   2345799999999 79999999988765       5678


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC---C--CceeEccC
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---N--LVAKISSY  177 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~---~--~~~kl~df  177 (206)
                      +++||++. ++|.+++.....  ...+...+.++.|++.||.|||+   .+|+||||||+||+++.   +  ..++|+||
T Consensus        94 ~lv~E~~~-g~L~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlKp~NIll~~~~~~~~~~~kL~DF  167 (432)
T 3p23_A           94 YIAIELCA-ATLQEYVEQKDF--AHLGLEPITLLQQTTSGLAHLHS---LNIVHRDLKPHNILISMPNAHGKIKAMISDF  167 (432)
T ss_dssp             EEEEECCS-EEHHHHHHSSSC--CCCSSCHHHHHHHHHHHHHHHHH---TTCCCCCCSTTSEEECCCBTTTBCCEEECCT
T ss_pred             EEEEECCC-CCHHHHHHhcCC--CccchhHHHHHHHHHHHHHHHHH---CcCEeCCCCHHHEEEecCCCCCceeEEEecc
Confidence            99999996 499999976542  24444567899999999999999   79999999999999953   2  35789999


Q ss_pred             Ccccccccc----ccccccccCccccCCCCCC
Q 028629          178 NLPLLAENA----EKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       178 ~~a~~~~~~----~~~~~~~~~~~y~aPE~~~  205 (206)
                      |+++.....    .......+|++|+|||...
T Consensus       168 G~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~  199 (432)
T 3p23_A          168 GLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLS  199 (432)
T ss_dssp             TEEECC------------CCSCTTSCCGGGTS
T ss_pred             cceeeccCCCcceeeccccCCCcCccChhhhh
Confidence            999876543    2333467999999999753

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.95  E-value=2.2e-27  Score=183.13  Aligned_cols=143  Identities=10%  Similarity=0.062  Sum_probs=125.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc---cHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH---STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|+..+.||+|+||.||+|... +++.||+|++......   ..+.+.+|+..+.+++|+||+++++++..       
T Consensus        30 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~-------  102 (286)
T 3uqc_A           30 NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHT-------  102 (286)
T ss_dssp             TTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-------
T ss_pred             cCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEE-------
Confidence            467999999999999999999986 6899999999755432   23678899999999999999999998865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+..+++|||+++++|.+++...     ........++.|++.||.|||+   .+|+|+||||+||++++++.++|++++
T Consensus       103 ~~~~~lv~e~~~g~~L~~~l~~~-----~~~~~~~~i~~ql~~aL~~lH~---~givH~Dikp~NIll~~~g~~kl~~~~  174 (286)
T 3uqc_A          103 RAGGLVVAEWIRGGSLQEVADTS-----PSPVGAIRAMQSLAAAADAAHR---AGVALSIDHPSRVRVSIDGDVVLAYPA  174 (286)
T ss_dssp             TTEEEEEEECCCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGGGEEEETTSCEEECSCC
T ss_pred             CCcEEEEEEecCCCCHHHHHhcC-----CChHHHHHHHHHHHHHHHHHHH---CCCccCCCCcccEEEcCCCCEEEEecc
Confidence            56799999999999999998643     3455678899999999999999   799999999999999999999999776


Q ss_pred             cc
Q 028629          179 LP  180 (206)
Q Consensus       179 ~a  180 (206)
                      ..
T Consensus       175 ~~  176 (286)
T 3uqc_A          175 TM  176 (286)
T ss_dssp             CC
T ss_pred             cc
Confidence            65

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.94  E-value=2e-26  Score=178.58  Aligned_cols=151  Identities=17%  Similarity=0.285  Sum_probs=127.5

Q ss_pred             HhcCCccc-ceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHH-hccCCCceeeeccccccccccCCC
Q 028629           22 ATNNFDTS-AFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELI-SKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        22 ~~~~~~~~-~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ..++|... +.||+|+||.||+|... +++.||+|.+..     .....+|+.++ +...|+||+++++++....   ..
T Consensus        15 ~~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~---~~   86 (299)
T 3m2w_A           15 IIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLY---AG   86 (299)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEE---TT
T ss_pred             cccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhhc---CC
Confidence            35678777 78999999999999975 799999999863     24566788887 5558999999999875311   12


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC---CCceeEc
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---NLVAKIS  175 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~---~~~~kl~  175 (206)
                      ....+++|||+++++|.+++..... ..+++..++.++.|++.||.|||+   .+++|+||||+||+++.   ++.++|+
T Consensus        87 ~~~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp~Nil~~~~~~~~~~kl~  162 (299)
T 3m2w_A           87 RKCLLIVMECLDGGELFSRIQDRGD-QAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLT  162 (299)
T ss_dssp             EEEEEEEECCCCSCBHHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESSSSTTCCEEEC
T ss_pred             CceEEEEEeecCCCcHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEecCCCCCcEEEe
Confidence            4578999999999999999987533 468999999999999999999999   79999999999999997   7899999


Q ss_pred             cCCcccccc
Q 028629          176 SYNLPLLAE  184 (206)
Q Consensus       176 df~~a~~~~  184 (206)
                      |||++....
T Consensus       163 Dfg~a~~~~  171 (299)
T 3m2w_A          163 DFGFAKETT  171 (299)
T ss_dssp             CCTTCEECT
T ss_pred             ccccccccc
Confidence            999997654

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.94  E-value=1e-27  Score=199.53  Aligned_cols=154  Identities=12%  Similarity=0.143  Sum_probs=118.2

Q ss_pred             cccceeccCcceeEEEEEEeCCcEEEEEEeecCCCc--------cHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           27 DTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH--------STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        27 ~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~--------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ...+.||+|+||.||+|.. .+..+++|........        ..+.+.+|++++++++|+||+++..++..       
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~-------  410 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVD-------  410 (540)
T ss_dssp             ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEE-------
T ss_pred             CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEe-------
Confidence            4567899999999999954 4788888886543211        12357899999999999999955554443       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+..+++|||+++++|.+++..           +..++.|++.+|.|||+   .+|+||||||+|||+++  .+||+|||
T Consensus       411 ~~~~~lVmE~~~ggsL~~~l~~-----------~~~i~~qi~~aL~~LH~---~gIiHrDiKp~NILl~~--~~kL~DFG  474 (540)
T 3en9_A          411 LDNKRIMMSYINGKLAKDVIED-----------NLDIAYKIGEIVGKLHK---NDVIHNDLTTSNFIFDK--DLYIIDFG  474 (540)
T ss_dssp             TTTTEEEEECCCSEEHHHHSTT-----------CTHHHHHHHHHHHHHHH---TTEECTTCCTTSEEESS--SEEECCCT
T ss_pred             CCccEEEEECCCCCCHHHHHHH-----------HHHHHHHHHHHHHHHHH---CcCccCCCCHHHEEECC--eEEEEECc
Confidence            3456999999999999998865           45789999999999999   79999999999999998  99999999


Q ss_pred             cccccccccc--------ccccccCccccCCCCC
Q 028629          179 LPLLAENAEK--------VGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~~--------~~~~~~~~~y~aPE~~  204 (206)
                      +++.......        .....+|+.|||||..
T Consensus       475 la~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~  508 (540)
T 3en9_A          475 LGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIW  508 (540)
T ss_dssp             TCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             cCEECCCccccccchhhhhhhhcCCCCcCCHHHH
Confidence            9998766432        2357899999999953

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.94  E-value=5.6e-27  Score=189.55  Aligned_cols=175  Identities=15%  Similarity=0.177  Sum_probs=128.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCC-Cceeeeccc---------
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRH-CHLVSALGH---------   88 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h-~~i~~~~~~---------   88 (206)
                      ..+|...+.||+|+||.||+|... +|+.||+|++....   ....+.+.+|+.+++.+.| .|...+...         
T Consensus        77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~  156 (413)
T 3dzo_A           77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  156 (413)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred             ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence            345788899999999999999976 79999999987433   2235678899999999976 322111111         


Q ss_pred             ccc-------ccccC---CCCceEEEEEeecCCCCHHHHHhc----CCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCce
Q 028629           89 CFE-------CYFDD---SSVSRIFLIFEYVPNGTLRSWISE----GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGV  154 (206)
Q Consensus        89 ~~~-------~~~~~---~~~~~~~lv~e~~~~~~L~~~~~~----~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i  154 (206)
                      +..       .....   ......+++|+.+ +++|.+++..    ......+++..++.++.|++.||.|||+   .+|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~i  232 (413)
T 3dzo_A          157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH---YGL  232 (413)
T ss_dssp             EECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH---TTE
T ss_pred             cccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHh---CCc
Confidence            000       00000   0023467777766 5699988851    1112568899999999999999999999   799


Q ss_pred             eccCCccccEEecCCCceeEccCCccccccccccccccccCccccCCCCC
Q 028629          155 FSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       155 ~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +||||||+|||++.++.+||+|||+++.....  .....| ..|+|||..
T Consensus       233 iHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~--~~~~~g-~~y~aPE~~  279 (413)
T 3dzo_A          233 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS--AVSPIG-RGFAPPETT  279 (413)
T ss_dssp             ECSCCCGGGEEECTTCCEEECCGGGCEETTEE--ECCCCC-TTTCCHHHH
T ss_pred             ccCCcccceEEEecCCeEEEEeccceeecCCc--cccCCC-CceeCchhh
Confidence            99999999999999999999999999876654  333566 999999964

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.92  E-value=5.9e-25  Score=169.17  Aligned_cols=144  Identities=10%  Similarity=0.096  Sum_probs=113.8

Q ss_pred             HHHHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCC------------------ccHHHHHHHHHHHhccC
Q 028629           17 EELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS------------------HSTRNFMHHIELISKLR   78 (206)
Q Consensus        17 ~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~------------------~~~~~~~~e~~~l~~l~   78 (206)
                      ..+......|...+.||+|+||.||+|...+|..||+|.+.....                  .....+.+|+.++++++
T Consensus        83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~  162 (282)
T 1zar_A           83 HRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ  162 (282)
T ss_dssp             HHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc
Confidence            344444556777799999999999999997799999999964321                  12456889999999998


Q ss_pred             CCceeeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccC
Q 028629           79 HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNN  158 (206)
Q Consensus        79 h~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~d  158 (206)
                        | +++.+++.        .+..+++|||+++++|.+ +...         ....++.|++.||.|||+   .+++|+|
T Consensus       163 --~-~~v~~~~~--------~~~~~lvmE~~~g~~L~~-l~~~---------~~~~i~~qi~~~l~~lH~---~giiHrD  218 (282)
T 1zar_A          163 --G-LAVPKVYA--------WEGNAVLMELIDAKELYR-VRVE---------NPDEVLDMILEEVAKFYH---RGIVHGD  218 (282)
T ss_dssp             --T-SSSCCEEE--------EETTEEEEECCCCEEGGG-CCCS---------CHHHHHHHHHHHHHHHHH---TTEECSC
T ss_pred             --C-CCcCeEEe--------ccceEEEEEecCCCcHHH-cchh---------hHHHHHHHHHHHHHHHHH---CCCEeCC
Confidence              4 56666442        245799999999999988 4221         123589999999999999   8999999


Q ss_pred             CccccEEecCCCceeEccCCccccccc
Q 028629          159 LKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       159 l~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                      |||+|||++ ++.++|+|||+|.....
T Consensus       219 lkp~NILl~-~~~vkl~DFG~a~~~~~  244 (282)
T 1zar_A          219 LSQYNVLVS-EEGIWIIDFPQSVEVGE  244 (282)
T ss_dssp             CSTTSEEEE-TTEEEECCCTTCEETTS
T ss_pred             CCHHHEEEE-CCcEEEEECCCCeECCC
Confidence            999999999 99999999999975543

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.89  E-value=9e-23  Score=155.09  Aligned_cols=142  Identities=10%  Similarity=0.082  Sum_probs=106.8

Q ss_pred             CCcccceeccCcceeEEEEEE-eCCcE--EEEEEeecCCCcc------------------------HHHHHHHHHHHhcc
Q 028629           25 NFDTSAFMGEGSKGQMYRGRL-KNGTF--IAIRCLKMKKSHS------------------------TRNFMHHIELISKL   77 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~-~~~~~--vaiK~~~~~~~~~------------------------~~~~~~e~~~l~~l   77 (206)
                      -|...+.||+|+||.||+|.. .+|..  ||+|++.......                        ...+.+|+..+..+
T Consensus        48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l  127 (258)
T 1zth_A           48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA  127 (258)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred             chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence            356788999999999999998 58988  9999875432110                        12578899999999


Q ss_pred             CCCceeeeccccccccccCCCCceEEEEEeecCC-C----CHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHh-cCCC
Q 028629           78 RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPN-G----TLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLH-TGIV  151 (206)
Q Consensus        78 ~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~----~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH-~~~~  151 (206)
                      .|+++.....+.         ....+++|||+.+ |    +|.+....      .++.....++.|++.+|.+|| +   
T Consensus       128 ~~~~i~~p~~~~---------~~~~~lVmE~~g~~g~~~~~L~~~~~~------~~~~~~~~i~~qi~~~l~~lH~~---  189 (258)
T 1zth_A          128 KEAGVSVPQPYT---------YMKNVLLMEFIGEDELPAPTLVELGRE------LKELDVEGIFNDVVENVKRLYQE---  189 (258)
T ss_dssp             HHTTCCCCCEEE---------EETTEEEEECCEETTEECCBHHHHGGG------GGGSCHHHHHHHHHHHHHHHHHT---
T ss_pred             HhCCCCCCeEEE---------cCCCEEEEEecCCCCCccccHHHHhhc------cChHHHHHHHHHHHHHHHHHHHH---
Confidence            888652221111         1246899999942 3    66665432      224456788999999999999 8   


Q ss_pred             CceeccCCccccEEecCCCceeEccCCcccccccc
Q 028629          152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENA  186 (206)
Q Consensus       152 ~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~  186 (206)
                      .+++|+||||+|||+++  .++|+|||+|.....+
T Consensus       190 ~givHrDlkp~NILl~~--~~~liDFG~a~~~~~~  222 (258)
T 1zth_A          190 AELVHADLSEYNIMYID--KVYFIDMGQAVTLRHP  222 (258)
T ss_dssp             SCEECSSCSTTSEEESS--SEEECCCTTCEETTST
T ss_pred             CCEEeCCCCHHHEEEcC--cEEEEECcccccCCCc
Confidence            79999999999999998  9999999999876543

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.80  E-value=8.1e-20  Score=145.08  Aligned_cols=148  Identities=14%  Similarity=0.130  Sum_probs=99.0

Q ss_pred             cCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCC--------------ccHHHHHHHHHHHhccCCCceeeecccc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKS--------------HSTRNFMHHIELISKLRHCHLVSALGHC   89 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~--------------~~~~~~~~e~~~l~~l~h~~i~~~~~~~   89 (206)
                      .-|++...||.|++|.||+|...+|+.||+|+++....              ........+.+++....|+|+.+++...
T Consensus        95 ~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~g  174 (397)
T 4gyi_A           95 DVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEG  174 (397)
T ss_dssp             SCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34899999999999999999988899999998754210              0111222233333333344444443322


Q ss_pred             ccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC
Q 028629           90 FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN  169 (206)
Q Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~  169 (206)
                      ....... .....+++|||++|.+|.++....         ....++.|++.+|.++|+   .+++||||||.|||++++
T Consensus       175 v~vp~p~-~~~~~~LVME~i~G~~L~~l~~~~---------~~~~l~~qll~~l~~lH~---~gIVHrDLKp~NILl~~d  241 (397)
T 4gyi_A          175 FPVPEPI-AQSRHTIVMSLVDALPMRQVSSVP---------DPASLYADLIALILRLAK---HGLIHGDFNEFNILIREE  241 (397)
T ss_dssp             CSCCCEE-EEETTEEEEECCSCEEGGGCCCCS---------CHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEEEE
T ss_pred             CCCCeee-eccCceEEEEecCCccHhhhcccH---------HHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHEEEeCC
Confidence            1100000 011246999999998886543221         123567899999999999   799999999999999876


Q ss_pred             C----------ceeEccCCcccccc
Q 028629          170 L----------VAKISSYNLPLLAE  184 (206)
Q Consensus       170 ~----------~~kl~df~~a~~~~  184 (206)
                      +          .+.|+||+-+....
T Consensus       242 gd~~d~~~~~~~~~iID~~Q~V~~~  266 (397)
T 4gyi_A          242 KDAEDPSSITLTPIIIXFPQMVSMD  266 (397)
T ss_dssp             ECSSCTTSEEEEEEECCCTTCEETT
T ss_pred             CCcccccccccceEEEEeCCcccCC
Confidence            5          48999999875443

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.47  E-value=3.5e-13  Score=102.08  Aligned_cols=149  Identities=9%  Similarity=-0.019  Sum_probs=110.2

Q ss_pred             HHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccC-CCceeeeccccccccccCCC
Q 028629           20 EEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        20 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ......|.....++.++.+.||++... +..+++|............+.+|...++.+. +..+.++++++..       
T Consensus        10 ~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~-------   81 (263)
T 3tm0_A           10 KKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERH-------   81 (263)
T ss_dssp             HHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEE-------
T ss_pred             HHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEec-------
Confidence            345567888888888888999998754 6789999986432223345788999999884 5667777776644       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCC----------------------------
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGI----------------------------  150 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~----------------------------  150 (206)
                      .+..+++||+++|.++.+.+...        .....++.+++.++..||+-.                            
T Consensus        82 ~~~~~lv~e~i~G~~l~~~~~~~--------~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (263)
T 3tm0_A           82 DGWSNLLMSEADGVLCSEEYEDE--------QSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADV  153 (263)
T ss_dssp             TTEEEEEEECCSSEEHHHHCCTT--------TCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCC
T ss_pred             CCceEEEEEecCCeehhhccCCc--------ccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccc
Confidence            46789999999999988763211        112356788889999999710                            


Q ss_pred             ----------------------------CCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          151 ----------------------------VPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       151 ----------------------------~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                                                  ...++|+|++|.||+++++..+.|+||+.+....
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~gd  215 (263)
T 3tm0_A          154 DCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRAD  215 (263)
T ss_dssp             SGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEEEE
T ss_pred             ccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcccCC
Confidence                                        0348999999999999876566799999986543

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.38  E-value=1.4e-12  Score=98.38  Aligned_cols=140  Identities=15%  Similarity=0.088  Sum_probs=95.2

Q ss_pred             cCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCc--eeeeccccccccccCCCCce
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH--LVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~--i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ..+......+.|..+.||++...+|..+++|.....   ....+..|..+++.+.+.+  +.+++.+...       .+.
T Consensus        20 ~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~-------~~~   89 (264)
T 1nd4_A           20 FGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTE-------AGR   89 (264)
T ss_dssp             TTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEEC-------SSC
T ss_pred             CCCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccC-------CCC
Confidence            445544333456668999997666778999987533   2245678999998886544  4456655432       356


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCC-------------------------------
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGI-------------------------------  150 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~-------------------------------  150 (206)
                      .+++||+++|.++.  ...      .+.   ..++.+++..+..||...                               
T Consensus        90 ~~~v~e~i~G~~l~--~~~------~~~---~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (264)
T 1nd4_A           90 DWLLLGEVPGQDLL--SSH------LAP---AEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDL  158 (264)
T ss_dssp             EEEEEECCSSEETT--TSC------CCH---HHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSC
T ss_pred             CEEEEEecCCcccC--cCc------CCH---hHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhh
Confidence            89999999998874  211      111   245666777777777621                               


Q ss_pred             ------------------------CCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          151 ------------------------VPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       151 ------------------------~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                                              ...++|+|++|.||+++++..+.|+||+.+....
T Consensus       159 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~g~  216 (264)
T 1nd4_A          159 DEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVAD  216 (264)
T ss_dssp             CGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEEEE
T ss_pred             hhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcccCC
Confidence                                    0139999999999999877666799999986544

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=99.26  E-value=2.2e-11  Score=96.34  Aligned_cols=148  Identities=14%  Similarity=0.209  Sum_probs=103.9

Q ss_pred             cccceeccCcceeEEEEEEeCCcEEEEEEee--cCC-CccHHHHHHHHHHHhccCC--CceeeeccccccccccCCCCce
Q 028629           27 DTSAFMGEGSKGQMYRGRLKNGTFIAIRCLK--MKK-SHSTRNFMHHIELISKLRH--CHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        27 ~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~--~~~-~~~~~~~~~e~~~l~~l~h--~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ...+.++.|.++.||+.... +..+++|...  ... ......+.+|..+++.+..  ..+.+++.++.+.    ...+.
T Consensus        41 ~~~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~----~~~g~  115 (359)
T 3dxp_A           41 LSVEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDE----SVIGR  115 (359)
T ss_dssp             CEEEECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCT----TTTSS
T ss_pred             ceEEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCC----CccCC
Confidence            34667889999999998865 4678888765  322 1223467789999999864  4567777665431    11245


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCC-------------------------------
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGI-------------------------------  150 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~-------------------------------  150 (206)
                      .+++||+++|..+.+...     ..++...+..++.+++..|..||...                               
T Consensus       116 ~~~vme~v~G~~l~~~~~-----~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (359)
T 3dxp_A          116 AFYIMEFVSGRVLWDQSL-----PGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSE  190 (359)
T ss_dssp             CEEEEECCCCBCCCCTTC-----TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHC
T ss_pred             eEEEEEecCCeecCCCcc-----ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcC
Confidence            789999999877643111     23677888889999999999999720                               


Q ss_pred             ------------------------CCceeccCCccccEEecCCCc--eeEccCCcccccc
Q 028629          151 ------------------------VPGVFSNNLKITDILLDQNLV--AKISSYNLPLLAE  184 (206)
Q Consensus       151 ------------------------~~~i~h~dl~p~nil~~~~~~--~kl~df~~a~~~~  184 (206)
                                              ...++|+|++|.||++++++.  +.|.||+.+....
T Consensus       191 ~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g~  250 (359)
T 3dxp_A          191 TESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLGH  250 (359)
T ss_dssp             CSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEEEC
T ss_pred             CcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccccCC
Confidence                                    146999999999999997643  6899999997544

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.89  E-value=9.8e-09  Score=79.26  Aligned_cols=143  Identities=17%  Similarity=0.241  Sum_probs=94.8

Q ss_pred             ccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccC-CCce--eeeccccccccccCCCCceEEE
Q 028629           28 TSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHL--VSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        28 ~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~~i--~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      ..+.++.|....||+..    ..+++|.....  .....+..|..+++.+. +..+  ..+......    .......|+
T Consensus        24 ~i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~----~~~~~~~~~   93 (304)
T 3sg8_A           24 TIEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMP----SETYQMSFA   93 (304)
T ss_dssp             CCCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCC----CSSCSCSCE
T ss_pred             eeEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCC----CCCCCcceE
Confidence            35568889999888763    45788875422  33467888999998883 3333  233222111    111134578


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcC-----------------------------------
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTG-----------------------------------  149 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-----------------------------------  149 (206)
                      +|++++|.++.+....     .++.+.+..++.+++..+..||+.                                   
T Consensus        94 vm~~i~G~~l~~~~~~-----~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (304)
T 3sg8_A           94 GFTKIKGVPLTPLLLN-----NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGP  168 (304)
T ss_dssp             EEECCCCEECCHHHHH-----TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHH
T ss_pred             EEcccCCeECCccccc-----cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcc
Confidence            9999999877653322     255666677777777777777751                                   


Q ss_pred             --------------------CCCceeccCCccccEEecC--CCceeEccCCccccccc
Q 028629          150 --------------------IVPGVFSNNLKITDILLDQ--NLVAKISSYNLPLLAEN  185 (206)
Q Consensus       150 --------------------~~~~i~h~dl~p~nil~~~--~~~~kl~df~~a~~~~~  185 (206)
                                          ....++|+|++|.||++++  ...+.|+||+.+...+.
T Consensus       169 ~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~  226 (304)
T 3sg8_A          169 QMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDP  226 (304)
T ss_dssp             HHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECT
T ss_pred             cHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCCh
Confidence                                1135799999999999997  45678999999876543

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.81  E-value=8e-08  Score=74.31  Aligned_cols=141  Identities=15%  Similarity=0.108  Sum_probs=87.6

Q ss_pred             ccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCC---ceeeeccccccccccCCCCceEEE
Q 028629           28 TSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHC---HLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        28 ~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~---~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      ..+.++.|....||+.    +..+++|.-.  .......+..|..+++.+.+.   .+.++..+..      ...+..++
T Consensus        23 ~v~~l~~G~~n~v~~v----g~~~VlR~~~--~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~------~~~g~~~~   90 (306)
T 3tdw_A           23 SVESLGEGFRNYAILV----NGDWVFRFPK--SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGK------RSDGNPFV   90 (306)
T ss_dssp             CEEEEEECSSEEEEEE----TTTEEEEEES--SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEE------CTTSCEEE
T ss_pred             eeeecCCCcceeEEEE----CCEEEEEecC--CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecc------cCCCceEE
Confidence            3456778888888887    4567778742  223456788999999999653   2344443332      12345789


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcC-----------------------------------
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTG-----------------------------------  149 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-----------------------------------  149 (206)
                      +||+++|.++.+..-.     .++......++.+++..|..||+.                                   
T Consensus        91 v~e~i~G~~l~~~~~~-----~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~  165 (306)
T 3tdw_A           91 GYRKVQGQILGEDGMA-----VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLD  165 (306)
T ss_dssp             EEECCCSEECHHHHHT-----TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSC
T ss_pred             EEeccCCeECchhhhh-----hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccc
Confidence            9999999877653211     122233333333333333333321                                   


Q ss_pred             ----------------------CCCceeccCCccccEEecC---CCc-eeEccCCccccccc
Q 028629          150 ----------------------IVPGVFSNNLKITDILLDQ---NLV-AKISSYNLPLLAEN  185 (206)
Q Consensus       150 ----------------------~~~~i~h~dl~p~nil~~~---~~~-~kl~df~~a~~~~~  185 (206)
                                            ....++|+|++|.||++++   ++. +.|+||+.+...++
T Consensus       166 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~gd~  227 (306)
T 3tdw_A          166 ESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAISDP  227 (306)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEECG
T ss_pred             hhhHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCCCH
Confidence                                  1146799999999999997   455 48999998876544

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.74  E-value=1.8e-07  Score=70.73  Aligned_cols=137  Identities=14%  Similarity=0.097  Sum_probs=90.0

Q ss_pred             eccCcce-eEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccC-CCceeeeccccccccccCCCCceEEEEEee
Q 028629           32 MGEGSKG-QMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVSRIFLIFEY  108 (206)
Q Consensus        32 lg~g~~g-~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~~~~lv~e~  108 (206)
                      +..|..+ .||+.... ++..+++|+-.   ......+..|...|+.+. +-.+.+++.++..       .+..+++||+
T Consensus        32 ~~~G~S~~~v~rl~~~~~~~~~~lk~~~---~~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~-------~~~~~lvme~  101 (272)
T 4gkh_A           32 DNVGQSGATIYRLYGKPNAPELFLKHGK---GSVANDVTDEMVRLNWLTAFMPLPTIKHFIRT-------PDDAWLLTTA  101 (272)
T ss_dssp             EECSSSSCEEEEEECCTTCCCEEEEEEE---THHHHHHHHHHHHHHHHTTTSCCCCEEEEEEE-------TTEEEEEEEC
T ss_pred             ccCCCcCCeEEEEEecCCCeEEEEEECC---CCCHhHHHHHHHHHHHhccCCCcCeEEEEEEE-------CCeEEEEEEe
Confidence            3445544 58887754 56678888765   234566788999888874 3445666666544       4578999999


Q ss_pred             cCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCC--------------------------------------
Q 028629          109 VPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGI--------------------------------------  150 (206)
Q Consensus       109 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--------------------------------------  150 (206)
                      ++|.++.+......       .....++.+++..|..||...                                      
T Consensus       102 l~G~~~~~~~~~~~-------~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (272)
T 4gkh_A          102 IPGKTAFQVLEEYP-------DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGW  174 (272)
T ss_dssp             CCSEEHHHHHHHCG-------GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTC
T ss_pred             eCCccccccccCCH-------HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccch
Confidence            99988776554321       111223344444444444310                                      


Q ss_pred             -----------------CCceeccCCccccEEecCCCceeEccCCccccccc
Q 028629          151 -----------------VPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       151 -----------------~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                                       ...++|+|+.+.||++++++.+-|+||+.+.....
T Consensus       175 ~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~gdp  226 (272)
T 4gkh_A          175 PVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADR  226 (272)
T ss_dssp             CHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEEEET
T ss_pred             HHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccccCCH
Confidence                             01379999999999999877778999999975543

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=98.66  E-value=4.9e-07  Score=72.29  Aligned_cols=100  Identities=9%  Similarity=0.023  Sum_probs=59.1

Q ss_pred             CCCCCCccceeCHHHHHHHhcCC--------cccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC-------ccHHHH
Q 028629            4 GALGLPAYRTFSLEELEEATNNF--------DTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-------HSTRNF   67 (206)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~-------~~~~~~   67 (206)
                      |-++++....++..++......+        ...+.+|.|..+.||++... ++..+++|.......       .....+
T Consensus         2 ~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~   81 (397)
T 2olc_A            2 GVTKTPLYETLNESSAVALAVKLGLFPSKSTLTCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRA   81 (397)
T ss_dssp             ---CCCCCCCCCHHHHHHHHHHTTC-----CCEEEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHH
T ss_pred             CCCCCcccccCCHHHHHHHHHhcCcCCCCCceEEEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHH
Confidence            44566666666666655554422        13557899999999999754 567899997643211       223456


Q ss_pred             HHHHHHHhccCC--C-ceeeeccccccccccCCCCceEEEEEeecCCC
Q 028629           68 MHHIELISKLRH--C-HLVSALGHCFECYFDDSSVSRIFLIFEYVPNG  112 (206)
Q Consensus        68 ~~e~~~l~~l~h--~-~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~  112 (206)
                      ..|.++++.+..  + .+.+++.+.         ....+++||++++.
T Consensus        82 ~~E~~~L~~l~~~~~~~vP~~~~~d---------~~~~~lvmE~l~g~  120 (397)
T 2olc_A           82 RIESSALIRQGEHVPHLVPRVFYSD---------TEMAVTVMEDLSHL  120 (397)
T ss_dssp             HHHHHHHHHHHTTCGGGSCCEEEEE---------TTTTEEEECCCTTS
T ss_pred             HHHHHHHHHhhhhCCCCcCeEEEEc---------CCccEEEEEeCCCc
Confidence            778888887742  2 333444322         22357999999763

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=98.58  E-value=2.3e-07  Score=73.06  Aligned_cols=83  Identities=11%  Similarity=0.063  Sum_probs=51.9

Q ss_pred             ccee-ccCcceeEEEEEEe-------CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCC---Cceeeeccccccccc
Q 028629           29 SAFM-GEGSKGQMYRGRLK-------NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRH---CHLVSALGHCFECYF   94 (206)
Q Consensus        29 ~~~l-g~g~~g~v~~~~~~-------~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h---~~i~~~~~~~~~~~~   94 (206)
                      .+.| +.|..+.+|+....       ++..+++|......   ......+..|..+++.+..   ..+.+++.++...  
T Consensus        25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~--  102 (357)
T 3ats_A           25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTG--  102 (357)
T ss_dssp             EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSS--
T ss_pred             EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCC--
Confidence            4566 78888899988754       25678888765322   1112456778888888743   3455666554321  


Q ss_pred             cCCCCceEEEEEeecCCCCHH
Q 028629           95 DDSSVSRIFLIFEYVPNGTLR  115 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~  115 (206)
                        ...+..+++||+++|.++.
T Consensus       103 --~~~g~~~~v~e~l~G~~l~  121 (357)
T 3ats_A          103 --DVLGTPFFLMDYVEGVVPP  121 (357)
T ss_dssp             --TTTSSCEEEEECCCCBCCC
T ss_pred             --CccCCceEEEEecCCCChh
Confidence              1113568999999886543

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=98.21  E-value=2.8e-05  Score=60.40  Aligned_cols=32  Identities=13%  Similarity=0.169  Sum_probs=28.5

Q ss_pred             CceeccCCccccEEecCCCceeEccCCccccc
Q 028629          152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLA  183 (206)
Q Consensus       152 ~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~  183 (206)
                      ..++|+|+.+.||+++.++.+.|+||+.+...
T Consensus       222 ~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~g  253 (346)
T 2q83_A          222 PNLCHQDYGTGNTLLGENEQIWVIDLDTVSFD  253 (346)
T ss_dssp             CCEECSSCSTTSEEECGGGCEEECCCTTCEEC
T ss_pred             CceecCCCCcccEEEeCCCcEEEEehhhcccC
Confidence            68999999999999987888999999988543

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=98.09  E-value=6.7e-05  Score=57.17  Aligned_cols=78  Identities=18%  Similarity=0.172  Sum_probs=55.5

Q ss_pred             CCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCC---ceeeeccccccccccCCCCce
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHC---HLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~---~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      .....+.+|.|..+.||+....+|+.|++|+...........+..|...|+.+...   .+.+++.+.           .
T Consensus        16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~-----------~   84 (288)
T 3f7w_A           16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD-----------D   84 (288)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE-----------T
T ss_pred             CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc-----------C
Confidence            45667788999999999999888999999987644444445677899988888432   233443321           2


Q ss_pred             EEEEEeecCCCC
Q 028629          102 IFLIFEYVPNGT  113 (206)
Q Consensus       102 ~~lv~e~~~~~~  113 (206)
                      .+++||+++++.
T Consensus        85 ~~lv~e~l~~~~   96 (288)
T 3f7w_A           85 RTLAMEWVDERP   96 (288)
T ss_dssp             TEEEEECCCCCC
T ss_pred             ceEEEEeecccC
Confidence            468899987653

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=98.07  E-value=2.8e-05  Score=59.68  Aligned_cols=74  Identities=9%  Similarity=0.037  Sum_probs=43.7

Q ss_pred             CcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCce-eeeccccccccccCCCCceEEE
Q 028629           26 FDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHL-VSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i-~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +.-.+.|+.|....+|++     ..+++|......... .....|...++.+...++ .+++...         ...-++
T Consensus        20 ~~~i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~~-~~r~~E~~~l~~l~~~g~~P~~~~~~---------~~~~~~   84 (301)
T 3dxq_A           20 YTGPLERLGGLTNLVFRA-----GDLCLRIPGKGTEEY-INRANEAVAAREAAKAGVSPEVLHVD---------PATGVM   84 (301)
T ss_dssp             CCSCEEEESCSSEEEEEE-----TTEEEEEECC----C-CCHHHHHHHHHHHHHTTSSCCEEEEC---------TTTCCE
T ss_pred             ccceeEcCCcccccccee-----eeEEEECCCCCccce-eCHHHHHHHHHHHHHcCCCCceEEEE---------CCCCEE
Confidence            444778888999999998     457888775432211 123457877777753333 3444332         112357


Q ss_pred             EEeec-CCCCH
Q 028629          105 IFEYV-PNGTL  114 (206)
Q Consensus       105 v~e~~-~~~~L  114 (206)
                      ++||+ ++.++
T Consensus        85 v~e~i~~g~~l   95 (301)
T 3dxq_A           85 VTRYIAGAQTM   95 (301)
T ss_dssp             EEECCTTCEEC
T ss_pred             EEeecCCCccC
Confidence            89999 66444

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=97.95  E-value=0.0004  Score=53.68  Aligned_cols=167  Identities=6%  Similarity=0.067  Sum_probs=89.3

Q ss_pred             cceeCHHHHHHHhcCCcc-----cceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCc--ee
Q 028629           11 YRTFSLEELEEATNNFDT-----SAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCH--LV   83 (206)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~-----~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~--i~   83 (206)
                      ...++...+......|..     ...++ |....||+....+|+.+++|...... .....+..|..+++.+....  +.
T Consensus         8 ~~~l~~~~i~~~l~~~g~~~~~~~~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp   85 (328)
T 1zyl_A            8 FQTLHPDTIMDALFEHGIRVDSGLTPLN-SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVA   85 (328)
T ss_dssp             CCCCCHHHHHHHHHHTTCCCCSCCEEEC-CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBC
T ss_pred             CCCCCHHHHHHHHHHcCCCCCceEEeec-CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeec
Confidence            344555666555555532     23465 77778998776567779999886332 23456677888888775333  33


Q ss_pred             eeccccccccccCCCCceEEEEEeecCCCCHH-----HH------H---h---c-CC--CCcccCHHHH-----------
Q 028629           84 SALGHCFECYFDDSSVSRIFLIFEYVPNGTLR-----SW------I---S---E-GH--AWQSLTWTQR-----------  132 (206)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~-----~~------~---~---~-~~--~~~~~~~~~~-----------  132 (206)
                      +++..  +........+..++++++++|.++.     ..      +   .   . ..  .....+....           
T Consensus        86 ~~~~~--~g~~~~~~~g~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  163 (328)
T 1zyl_A           86 APVAF--NGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDA  163 (328)
T ss_dssp             CCCCB--TTBSCEEETTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTC
T ss_pred             ceeec--CCcEEEEECCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhc
Confidence            33332  1000000134678899999874321     11      1   0   0 00  0011222111           


Q ss_pred             -----------HHHHHHHHHHHHHHhc-CCCCceeccCCccccEEecCCCceeEccCCccccc
Q 028629          133 -----------ISAAIGVARGIQFLHT-GIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  183 (206)
Q Consensus       133 -----------~~~~~~i~~~l~~lH~-~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~  183 (206)
                                 ...+.+++..+.-+-. .....++|+|+++.||+++ + .+.|+||+.+...
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~g  224 (328)
T 1zyl_A          164 TLIPSGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARNG  224 (328)
T ss_dssp             SSSCTTTHHHHHHHHHHHHHHHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCEE
T ss_pred             CcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCcC
Confidence                       0111111222221111 1125689999999999999 4 8899999888643

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.93  E-value=0.00016  Score=55.90  Aligned_cols=77  Identities=9%  Similarity=0.066  Sum_probs=55.5

Q ss_pred             cccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccC---CCceeeeccccccccccCCCCceEE
Q 028629           27 DTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR---HCHLVSALGHCFECYFDDSSVSRIF  103 (206)
Q Consensus        27 ~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~---h~~i~~~~~~~~~~~~~~~~~~~~~  103 (206)
                      ...+.++.|....+|+... ++..+++|.....   ....+..|...|+.+.   ...+++++.+...       .+..+
T Consensus        39 ~~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~-------~g~~~  107 (312)
T 3jr1_A           39 KHKEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNS-------QGHSF  107 (312)
T ss_dssp             CEEEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEEC-------SSEEE
T ss_pred             eeeEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeec-------CCceE
Confidence            3456788999999999876 4678888877532   3566788988888884   2456666665532       35789


Q ss_pred             EEEeecCCCCH
Q 028629          104 LIFEYVPNGTL  114 (206)
Q Consensus       104 lv~e~~~~~~L  114 (206)
                      ++||++++..+
T Consensus       108 lvme~l~G~~~  118 (312)
T 3jr1_A          108 LLLEALNKSKN  118 (312)
T ss_dssp             EEEECCCCCCC
T ss_pred             EEEEeccCCCC
Confidence            99999988653

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=97.91  E-value=0.0001  Score=59.35  Aligned_cols=32  Identities=6%  Similarity=0.267  Sum_probs=28.4

Q ss_pred             CceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       152 ~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      ..++|+|++|.||++++++ +.|+||+.+....
T Consensus       232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~  263 (420)
T 2pyw_A          232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGP  263 (420)
T ss_dssp             CEEECSCCSGGGEEECSSC-EEECCCTTCEEEC
T ss_pred             CeEEecCCCCCcEEEeCCC-CEEEeCcccccCc
Confidence            6899999999999999776 9999999987654

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=97.83  E-value=0.00034  Score=53.94  Aligned_cols=166  Identities=11%  Similarity=0.128  Sum_probs=87.0

Q ss_pred             eeCHHHHHHHhcCCccc-----ceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCce--eee
Q 028629           13 TFSLEELEEATNNFDTS-----AFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHL--VSA   85 (206)
Q Consensus        13 ~~~~~~~~~~~~~~~~~-----~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i--~~~   85 (206)
                      .++..++.....+|...     +.++.|....+|+....++ .+++|.....  .....+..|..+++.+...++  .++
T Consensus         6 ~~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~--~~~~~l~~e~~~l~~L~~~g~~vP~~   82 (322)
T 2ppq_A            6 DITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKR--VEKNDLPFFLGLMQHLAAKGLSCPLP   82 (322)
T ss_dssp             CCCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCB
T ss_pred             cCCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCC--CCHHHHHHHHHHHHHHHHCCCCCCcc
Confidence            45666777777777652     3455677788998876544 6788887642  122345567887777743332  333


Q ss_pred             ccccccccccCCCCceEEEEEeecCCCCHHH-----H---------Hhc----CCCCc-----ccCHHHHHHH-------
Q 028629           86 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRS-----W---------ISE----GHAWQ-----SLTWTQRISA-------  135 (206)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~-----~---------~~~----~~~~~-----~~~~~~~~~~-------  135 (206)
                      +.......+. ...+..++++++++|..+..     .         +..    .....     ...|...+.-       
T Consensus        83 ~~~~~g~~~~-~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  161 (322)
T 2ppq_A           83 LPRKDGELLG-ELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADE  161 (322)
T ss_dssp             CCBTTCCSCE-EETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGG
T ss_pred             cCCCCCCEEE-EECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHh
Confidence            3211000000 01245789999998754311     0         110    00000     0112111100       


Q ss_pred             -----HHHHHHHHHHHhc----CCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          136 -----AIGVARGIQFLHT----GIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       136 -----~~~i~~~l~~lH~----~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                           ...+...+..+..    ....+++|+|+.+.||+++++..+.|+||+.+..
T Consensus       162 ~~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~  217 (322)
T 2ppq_A          162 VEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN  217 (322)
T ss_dssp             TSTTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             hhhhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence                 0112233444432    1124799999999999999776668999998854

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=97.73  E-value=0.00085  Score=52.01  Aligned_cols=34  Identities=6%  Similarity=0.065  Sum_probs=28.9

Q ss_pred             CceeccCCccccEEecCC----CceeEccCCccccccc
Q 028629          152 PGVFSNNLKITDILLDQN----LVAKISSYNLPLLAEN  185 (206)
Q Consensus       152 ~~i~h~dl~p~nil~~~~----~~~kl~df~~a~~~~~  185 (206)
                      ..++|+|+.+.||+++.+    +.+.|+||+.+.....
T Consensus       183 ~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G~~  220 (333)
T 3csv_A          183 MVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLGHR  220 (333)
T ss_dssp             CEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEECT
T ss_pred             CeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcCCC
Confidence            579999999999999874    6789999999875543

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=97.73  E-value=0.00018  Score=58.12  Aligned_cols=73  Identities=15%  Similarity=0.198  Sum_probs=46.8

Q ss_pred             ccceeccCcceeEEEEEEeC--------CcEEEEEEeecCCCccHHHHHHHHHHHhccCCCce-eeeccccccccccCCC
Q 028629           28 TSAFMGEGSKGQMYRGRLKN--------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHL-VSALGHCFECYFDDSS   98 (206)
Q Consensus        28 ~~~~lg~g~~g~v~~~~~~~--------~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i-~~~~~~~~~~~~~~~~   98 (206)
                      ..+.|+.|....+|++...+        +..+++|+....  .....+..|..+++.+...++ .++++.+.        
T Consensus        77 ~v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~--------  146 (429)
T 1nw1_A           77 RISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFS--------  146 (429)
T ss_dssp             EEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEET--------
T ss_pred             EEEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeC--------
Confidence            34567778889999998652        478899987421  112455678888888854444 44444331        


Q ss_pred             CceEEEEEeecCCCC
Q 028629           99 VSRIFLIFEYVPNGT  113 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~  113 (206)
                       +  .+++||++|.+
T Consensus       147 -~--g~v~e~l~G~~  158 (429)
T 1nw1_A          147 -G--GRLEEYIPSRP  158 (429)
T ss_dssp             -T--EEEECCCCEEE
T ss_pred             -C--CEEEEEeCCcc
Confidence             1  27889997633

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=97.66  E-value=0.00028  Score=56.01  Aligned_cols=144  Identities=10%  Similarity=0.060  Sum_probs=80.9

Q ss_pred             cceeccCcceeEEEEEEe--------CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCce-eeeccccccccccCCCC
Q 028629           29 SAFMGEGSKGQMYRGRLK--------NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHL-VSALGHCFECYFDDSSV   99 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~--------~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i-~~~~~~~~~~~~~~~~~   99 (206)
                      .+.+..|-...+|++...        ++..+++|+... .........+|..+++.+...++ .++++.+.         
T Consensus        55 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~-~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~---------  124 (379)
T 3feg_A           55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGA-ILQGVDSLVLESVMFAILAERSLGPQLYGVFP---------  124 (379)
T ss_dssp             CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEET---------
T ss_pred             EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCC-ccchHHHHHHHHHHHHHHHhcCCCCeEEEEcC---------
Confidence            445667778899998864        246889998632 22235566789999988854333 44444331         


Q ss_pred             ceEEEEEeecCCCCHHH-----------H---Hh---cCC--CCccc--CHHHHHHHHHHHHH-----------------
Q 028629          100 SRIFLIFEYVPNGTLRS-----------W---IS---EGH--AWQSL--TWTQRISAAIGVAR-----------------  141 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~-----------~---~~---~~~--~~~~~--~~~~~~~~~~~i~~-----------------  141 (206)
                      +  .+++||++|.++..           .   +.   .-.  .....  -+..+..+..++..                 
T Consensus       125 ~--g~v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l  202 (379)
T 3feg_A          125 E--GRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSL  202 (379)
T ss_dssp             T--EEEEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTH
T ss_pred             C--ccEEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHH
Confidence            1  28899998754421           1   11   100  00111  23444444443321                 


Q ss_pred             --HHHH----Hhc-CCCCceeccCCccccEEecCC----CceeEccCCcccccc
Q 028629          142 --GIQF----LHT-GIVPGVFSNNLKITDILLDQN----LVAKISSYNLPLLAE  184 (206)
Q Consensus       142 --~l~~----lH~-~~~~~i~h~dl~p~nil~~~~----~~~kl~df~~a~~~~  184 (206)
                        .+..    |.. .....++|+|+.+.||+++++    +.+.++||..+....
T Consensus       203 ~~~~~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~~~  256 (379)
T 3feg_A          203 KDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSYNY  256 (379)
T ss_dssp             HHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEEEE
T ss_pred             HHHHHHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCcCC
Confidence              1222    221 112468999999999999876    789999999997543

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=97.58  E-value=0.0007  Score=55.12  Aligned_cols=74  Identities=12%  Similarity=-0.016  Sum_probs=44.8

Q ss_pred             cceeccCcceeEEEEEEeC-CcEEEEEEeecCCCccHHHHHHHHHHHhccCCCce-eeeccccccccccCCCCceEEEEE
Q 028629           29 SAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHL-VSALGHCFECYFDDSSVSRIFLIF  106 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~~-~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i-~~~~~~~~~~~~~~~~~~~~~lv~  106 (206)
                      .+.|+.|-...+|++...+ +..+++|+........ .....|..+++.+...++ .++++.+.        .   ..++
T Consensus       113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~-idR~~E~~vl~~L~~~gl~P~ll~~~~--------~---G~v~  180 (458)
T 2qg7_A          113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEI-INREREKKISCILYNKNIAKKIYVFFT--------N---GRIE  180 (458)
T ss_dssp             EEEECC--CEEEEEEEETTTTEEEEEEEECC-CCSC-SCHHHHHHHHHHHTTSSSBCCEEEEET--------T---EEEE
T ss_pred             EEEcCCCeEeEEEEEEECCCCceEEEEECCCChhhh-cCHHHHHHHHHHHHhcCCCCCEEEEeC--------C---eEEE
Confidence            4567778888999998753 4788889875332211 122568888888865544 34444431        1   2489


Q ss_pred             eecCCCCH
Q 028629          107 EYVPNGTL  114 (206)
Q Consensus       107 e~~~~~~L  114 (206)
                      ||++|.++
T Consensus       181 e~I~G~~l  188 (458)
T 2qg7_A          181 EFMDGYAL  188 (458)
T ss_dssp             ECCCSEEC
T ss_pred             EeeCCccC
Confidence            99987443

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=97.45  E-value=0.0015  Score=51.02  Aligned_cols=34  Identities=15%  Similarity=0.280  Sum_probs=29.3

Q ss_pred             CceeccCCccccEEecCCCceeEccCCccccccc
Q 028629          152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       152 ~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~  185 (206)
                      ..++|+|+.+.||++++++.+.|+||+.+.....
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~~~  239 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPMLAPK  239 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCEEECT
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCeeCCH
Confidence            4799999999999999888899999988865443

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=97.26  E-value=0.00074  Score=53.22  Aligned_cols=31  Identities=10%  Similarity=0.165  Sum_probs=25.7

Q ss_pred             CceeccCCccccEEecCCCceeEccCCccccc
Q 028629          152 PGVFSNNLKITDILLDQNLVAKISSYNLPLLA  183 (206)
Q Consensus       152 ~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~  183 (206)
                      ..++|+|+.+.||+++++. +.|+||+.+...
T Consensus       212 ~~l~HgDl~~~Nil~~~~~-~~lID~e~a~~g  242 (369)
T 3c5i_A          212 IVFCHNDLQENNIINTNKC-LRLIDFEYSGFN  242 (369)
T ss_dssp             EEEECSCCCGGGEEECC-C-EEECCCTTCEEE
T ss_pred             eEEEeCCCCcccEEecCCc-EEEEEecCCCCC
Confidence            4689999999999998654 899999988643

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=96.80  E-value=0.006  Score=49.12  Aligned_cols=73  Identities=11%  Similarity=0.062  Sum_probs=45.6

Q ss_pred             cceeccCcceeEEEEEEeC--------CcEEEEEEeecCCCccHHHHHHHHHHHhccCCCce-eeeccccccccccCCCC
Q 028629           29 SAFMGEGSKGQMYRGRLKN--------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHL-VSALGHCFECYFDDSSV   99 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~~--------~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i-~~~~~~~~~~~~~~~~~   99 (206)
                      .+.+..|-...+|+....+        +..+++|+..... ....+..+|..+++.+...++ .++++.+         .
T Consensus        75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t-~~~idR~~E~~~l~~L~~~gi~P~l~~~~---------~  144 (424)
T 3mes_A           75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV-GKFYDSKVELDVFRYLSNINIAPNIIADF---------P  144 (424)
T ss_dssp             EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC--CCCCHHHHHHHHHHHHHTTSSCCEEEEE---------T
T ss_pred             EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc-chhcCHHHHHHHHHHHHhcCCCCCEEEEc---------C
Confidence            4456677788999998652        5788999865332 222234568888888753333 3444322         1


Q ss_pred             ceEEEEEeecCCCC
Q 028629          100 SRIFLIFEYVPNGT  113 (206)
Q Consensus       100 ~~~~lv~e~~~~~~  113 (206)
                        -+.++||++|.+
T Consensus       145 --~~~I~efI~G~~  156 (424)
T 3mes_A          145 --EGRIEEFIDGEP  156 (424)
T ss_dssp             --TEEEEECCCSEE
T ss_pred             --CCEEEEEeCCcc
Confidence              267899998855

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=96.43  E-value=0.012  Score=47.00  Aligned_cols=32  Identities=13%  Similarity=0.128  Sum_probs=26.6

Q ss_pred             ceeccCCccccEEe------cCCCceeEccCCcccccc
Q 028629          153 GVFSNNLKITDILL------DQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       153 ~i~h~dl~p~nil~------~~~~~~kl~df~~a~~~~  184 (206)
                      .++|+|+.+.||++      +++..+.++||..|....
T Consensus       245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~n~  282 (401)
T 3g15_A          245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYNY  282 (401)
T ss_dssp             EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEEEE
T ss_pred             eeEEecCCCCeEEEecCcccCcCCeEEEechHhccCCC
Confidence            46899999999999      345789999999997544

>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}

Probab=92.48  E-value=0.48  Score=34.36  Aligned_cols=74  Identities=12%  Similarity=0.079  Sum_probs=52.8

Q ss_pred             CceEEEEEeecCCC-CHHHHHhcCCCCcccCHHHHHHHHHHHHHHHH-HHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           99 VSRIFLIFEYVPNG-TLRSWISEGHAWQSLTWTQRISAAIGVARGIQ-FLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        99 ~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                      .+.+.+.++.-+++ ++.. +..      .+...++.++.+++.... +++     .-+|--++|+|++++.++.+++.-
T Consensus        60 eD~~~i~y~~~~~~~~f~~-i~~------~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P~NL~f~~~~~p~i~h  127 (219)
T 4ano_A           60 EDEVKVVIKPPSSFLTFAA-IRK------TTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCPENLMFNRALEPFFLH  127 (219)
T ss_dssp             SSEEEEEEECCTTCEEHHH-HHT------SCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCGGGEEECTTCCEEESC
T ss_pred             CCEEEEEEEcCcccCcHHH-HHh------cCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeCceEEEeCCCcEEEEE
Confidence            45666666655343 4443 322      678888999998887555 333     456777999999999999999998


Q ss_pred             CCcccccc
Q 028629          177 YNLPLLAE  184 (206)
Q Consensus       177 f~~a~~~~  184 (206)
                      .|+-..+.
T Consensus       128 RGi~~~lp  135 (219)
T 4ano_A          128 VGVKESLP  135 (219)
T ss_dssp             CEETTTBS
T ss_pred             cCCcccCC
Confidence            88865553

>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}

Probab=90.34  E-value=0.73  Score=33.30  Aligned_cols=75  Identities=8%  Similarity=0.136  Sum_probs=52.0

Q ss_pred             CceEEEEEeecCC-CCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           99 VSRIFLIFEYVPN-GTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        99 ~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                      .+.+.+.++.-+. .++.. +      ...+...++.++.+++....+++     .-+|--++|+|++++.++.+++.-.
T Consensus        56 eD~v~~~y~~~~~~~~f~~-i------k~~~~~eKlr~l~ni~~l~~~~~-----~r~tf~L~P~NL~f~~~~~p~i~~R  123 (215)
T 4ann_A           56 RDSFQIHYDINDNHTPFDN-I------KSFTKNEKLRYLLNIKNLEEVNR-----TRYTFVLAPDELFFTRDGLPIAKTR  123 (215)
T ss_dssp             SSEEEEEECCCTTSEEGGG-G------GGSCHHHHHHHHHHGGGGGGGGG-----SSEECCCSGGGEEECTTSCEEESCC
T ss_pred             ccEEEEEEEcCcccCCHHH-H------HhcCHHHHHHHHHHHHHHHHHhc-----CceEEEEecceEEEcCCCCEEEEEc
Confidence            3455555554432 23333 2      23678889999999988764444     3467779999999999999999988


Q ss_pred             Cccccccc
Q 028629          178 NLPLLAEN  185 (206)
Q Consensus       178 ~~a~~~~~  185 (206)
                      |+...+.+
T Consensus       124 Gik~~l~P  131 (215)
T 4ann_A          124 GLQNVVDP  131 (215)
T ss_dssp             EETTTBSC
T ss_pred             cCccCCCC
Confidence            87655443

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=86.85  E-value=1.8  Score=31.43  Aligned_cols=60  Identities=7%  Similarity=-0.029  Sum_probs=44.9

Q ss_pred             CHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629          113 TLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus       113 ~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                      +|.+++...+  +++++++.|.++.|.+.+|.-+-..  ..-...=+.|..|++..+|.+...+
T Consensus        34 SL~eIL~~~~--~PlsEEqaWALc~Qc~~~L~~~~~~--~~~~~~i~~~~~i~l~~dG~V~f~~   93 (229)
T 2yle_A           34 SLEEILRLYN--QPINEEQAWAVCYQCCGSLRAAARR--RQPRHRVRSAAQIRVWRDGAVTLAP   93 (229)
T ss_dssp             EHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHT--TCCCCCCCSGGGEEEETTSCEEECC
T ss_pred             cHHHHHHHcC--CCcCHHHHHHHHHHHHHHHHhhhhc--ccCCceecCCcceEEecCCceeccc
Confidence            7999998765  6899999999999999998776210  0111233467999999999987664

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=83.35  E-value=0.12  Score=42.07  Aligned_cols=61  Identities=5%  Similarity=-0.061  Sum_probs=17.0

Q ss_pred             ccceeccCcceeEEEEEEeC-CcEEEE------EEeecCC--CccHHHHHHHHHHHhccCCCceeeecccccc
Q 028629           28 TSAFMGEGSKGQMYRGRLKN-GTFIAI------RCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFE   91 (206)
Q Consensus        28 ~~~~lg~g~~g~v~~~~~~~-~~~vai------K~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   91 (206)
                      ..+.+|   ||.||++.+.. ..+||+      |......  ......+.+|..++..++|+|+++.+++...
T Consensus       146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~  215 (463)
T 3cxl_A          146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH  215 (463)
T ss_dssp             STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred             ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence            345555   99999999863 356777      6554221  2223457778888888999999998886543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	206
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	3e-26
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	1e-24
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	1e-24
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	4e-24
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	1e-23
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	1e-23
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-23
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	2e-23
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	7e-23
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	8e-23
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-22
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	3e-22
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	1e-21
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	6e-21
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-19
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	1e-19
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	1e-19
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	1e-19
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-19
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	4e-19
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	5e-19
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	6e-19
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-18
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	2e-18
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	3e-18
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	3e-18
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	4e-18
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	5e-18
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	7e-18
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	1e-17
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	1e-17
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	2e-17
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	2e-17
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	2e-17
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	4e-17
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	5e-17
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	7e-17
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	1e-16
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	2e-16
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	4e-15
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	9e-15
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	1e-14
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	5e-14
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	6e-14
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	6e-14
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	6e-13
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	1e-12
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-12
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	4e-12
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	4e-12
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	4e-12
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	5e-12
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	1e-11
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	5e-11
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	2e-10
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	3e-10
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	3e-09
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	1e-06

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (249), Expect = 3e-26
 Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 26/203 (12%)

Query: 13  TFSLEELEEATNNFDTSAFM---------GEGSKGQMYRGRLK----NGTFIAIRCLKMK 59
            F+ E+  EA   F     +         G G  G++  G LK       F+AI+ LK  
Sbjct: 6   PFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSG 65

Query: 60  KSHST-RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI 118
            +    R+F+    ++ +  H +++       E     S+   + +I E++ NG+L S++
Sbjct: 66  YTEKQRRDFLSEASIMGQFDHPNVIH-----LEGVVTKST--PVMIITEFMENGSLDSFL 118

Query: 119 SEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN 178
            +       T  Q +    G+A G+++L           +L   +IL++ NLV K+S + 
Sbjct: 119 RQNDGQF--TVIQLVGMLRGIAAGMKYLAD---MNYVHRDLAARNILVNSNLVCKVSDFG 173

Query: 179 LPLLAENAEKVGHVTPYSGSINP 201
           L    E+       T   G   P
Sbjct: 174 LSRFLEDDTSDPTYTSALGGKIP 196

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.5 bits (237), Expect = 1e-24
 Identities = 33/163 (20%), Positives = 73/163 (44%), Gaps = 13/163 (7%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
           G+G  G +  G  + G  +A++C+K     + + F+    ++++LRH +LV  LG   E 
Sbjct: 16  GKGEFGDVMLGDYR-GNKVAVKCIK--NDATAQAFLAEASVMTQLRHSNLVQLLGVIVE- 71

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 152
                    ++++ EY+  G+L  ++        L     +  ++ V   +++L      
Sbjct: 72  -----EKGGLYIVTEYMAKGSLVDYLRS-RGRSVLGGDCLLKFSLDVCEAMEYLEG---N 122

Query: 153 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPY 195
                +L   ++L+ ++ VAK+S + L   A + +  G +   
Sbjct: 123 NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVK 165

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (238), Expect = 1e-24
 Identities = 31/183 (16%), Positives = 68/183 (37%), Gaps = 13/183 (7%)

Query: 17  EELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISK 76
           ++ E           +G GS G +Y+G+      + +  +        + F + + ++ K
Sbjct: 1   DDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRK 60

Query: 77  LRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAA 136
            RH +++  +G+             + ++ ++    +L   +            + I  A
Sbjct: 61  TRHVNILLFMGYSTAPQ--------LAIVTQWCEGSSLYHHLHIIE--TKFEMIKLIDIA 110

Query: 137 IGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYS 196
              A+G+ +LH      +   +LK  +I L ++L  KI  + L  +             S
Sbjct: 111 RQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLS 167

Query: 197 GSI 199
           GSI
Sbjct: 168 GSI 170

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.4 bits (234), Expect = 4e-24
 Identities = 42/179 (23%), Positives = 81/179 (45%), Gaps = 13/179 (7%)

Query: 9   PAYRTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFM 68
           P  +  + +  E    +      +G+G  G+++ G     T +AI+ LK   + S   F+
Sbjct: 2   PQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFL 60

Query: 69  HHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLT 128
              +++ KLRH  LV              S   I+++ EY+  G+L  ++ +G   + L 
Sbjct: 61  QEAQVMKKLRHEKLVQLYAVV--------SEEPIYIVTEYMSKGSLLDFL-KGETGKYLR 111

Query: 129 WTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
             Q +  A  +A G+ ++           +L+  +IL+ +NLV K++ + L  L E+ E
Sbjct: 112 LPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 167

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (229), Expect = 1e-23
 Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 13/156 (8%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV 83
            +      +G G  G +  G+ +    +AI+ +K + S S   F+   +++  L H  LV
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLV 62

Query: 84  SALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGI 143
              G C +          IF+I EY+ NG L +++            Q +     V   +
Sbjct: 63  QLYGVCTKQ-------RPIFIITEYMANGCLLNYLR--EMRHRFQTQQLLEMCKDVCEAM 113

Query: 144 QFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           ++L +         +L   + L++   V K+S + L
Sbjct: 114 EYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGL 146

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.8 bits (230), Expect = 1e-23
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 13/155 (8%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
           G G  G+++ G     T +A++ LK + S S   F+    L+ +L+H  LV       + 
Sbjct: 22  GAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ- 79

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVP 152
                    I++I EY+ NG+L  ++ +  +   LT  + +  A  +A G+ F+      
Sbjct: 80  -------EPIYIITEYMENGSLVDFL-KTPSGIKLTINKLLDMAAQIAEGMAFIEE---R 128

Query: 153 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
                +L+  +IL+   L  KI+ + L  L E+ E
Sbjct: 129 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 163

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.0 bits (230), Expect = 2e-23
 Identities = 36/169 (21%), Positives = 79/169 (46%), Gaps = 14/169 (8%)

Query: 33  GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFEC 92
           G+G  G+++RG+ + G  +A++    ++  S       I     LRH +++  +    + 
Sbjct: 12  GKGRFGEVWRGKWR-GEEVAVKIFSSREERSWF-REAEIYQTVMLRHENILGFIAADNK- 68

Query: 93  YFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV- 151
             D+ + ++++L+ +Y  +G+L  +++      ++T    I  A+  A G+  LH  IV 
Sbjct: 69  --DNGTWTQLWLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVG 122

Query: 152 ----PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYS 196
               P +   +LK  +IL+ +N    I+   L +  ++A     + P  
Sbjct: 123 TQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNH 171

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.5 bits (229), Expect = 2e-23
 Identities = 29/165 (17%), Positives = 71/165 (43%), Gaps = 13/165 (7%)

Query: 12  RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHSTRNFMHH 70
            + + ++ E    +      +G G  G++Y G  K     +A++ LK + +     F+  
Sbjct: 5   SSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKE 63

Query: 71  IELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWT 130
             ++ +++H +LV  LG C             ++I E++  G L  ++ E +  Q ++  
Sbjct: 64  AAVMKEIKHPNLVQLLGVCTRE-------PPFYIITEFMTYGNLLDYLRECN-RQEVSAV 115

Query: 131 QRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 175
             +  A  ++  +++L           +L   + L+ +N + K++
Sbjct: 116 VLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVA 157

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.5 bits (224), Expect = 7e-23
 Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 13/164 (7%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV 83
           +       +G G  G ++ G   N   +AI+ ++ + + S  +F+   E++ KL H  LV
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLV 63

Query: 84  SALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGI 143
              G C E        + I L+FE++ +G L  ++       +      +   + V  G 
Sbjct: 64  QLYGVCLEQ-------APICLVFEFMEHGCLSDYLRTQRGLFA--AETLLGMCLDVCEG- 113

Query: 144 QFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
             +       V   +L   + L+ +N V K+S + +     + +
Sbjct: 114 --MAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ 155

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.3 bits (226), Expect = 8e-23
 Identities = 24/159 (15%), Positives = 69/159 (43%), Gaps = 14/159 (8%)

Query: 19  LEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRN-FMHHIELISK 76
           +E   ++F+  + +G G+ G +++   K +G  +A + + ++   + RN  +  ++++ +
Sbjct: 1   MELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHE 60

Query: 77  LRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAA 136
               ++V   G  +           I +  E++  G+L   + +      +        +
Sbjct: 61  CNSPYIVGFYGAFYSD-------GEISICMEHMDGGSLDQVLKKA---GRIPEQILGKVS 110

Query: 137 IGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 175
           I V +G+ +L       +   ++K ++IL++     K+ 
Sbjct: 111 IAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLC 147

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 89.9 bits (222), Expect = 2e-22
 Identities = 42/213 (19%), Positives = 82/213 (38%), Gaps = 38/213 (17%)

Query: 15  SLEELEEATNNFDTSAFMGEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHSTR-NF 67
            L  LE   NN +    +GEG+ G++++ R          T +A++ LK + S   + +F
Sbjct: 4   KLLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADF 63

Query: 68  MHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISE------- 120
                L+++  + ++V  LG C            + L+FEY+  G L  ++         
Sbjct: 64  QREAALMAEFDNPNIVKLLGVCAVG-------KPMCLLFEYMAYGDLNEFLRSMSPHTVC 116

Query: 121 --------------GHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILL 166
                               L+  +++  A  VA G+ +L           +L   + L+
Sbjct: 117 SLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE---RKFVHRDLATRNCLV 173

Query: 167 DQNLVAKISSYNLPLLAENAEKVGHVTPYSGSI 199
            +N+V KI+ + L     +A+        +  I
Sbjct: 174 GENMVVKIADFGLSRNIYSADYYKADGNDAIPI 206

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (221), Expect = 3e-22
 Identities = 24/148 (16%), Positives = 65/148 (43%), Gaps = 13/148 (8%)

Query: 33  GEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G+G+ G++Y+ + K      A + +  K      ++M  I++++   H ++V       +
Sbjct: 21  GDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIV----KLLD 76

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
            ++ +   + ++++ E+   G + + + E    + LT +Q           + +LH    
Sbjct: 77  AFYYE---NNLWILIEFCAGGAVDAVMLELE--RPLTESQIQVVCKQTLDALNYLHD--- 128

Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNL 179
             +   +LK  +IL   +   K++ + +
Sbjct: 129 NKIIHRDLKAGNILFTLDGDIKLADFGV 156

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.0 bits (215), Expect = 1e-21
 Identities = 34/184 (18%), Positives = 74/184 (40%), Gaps = 17/184 (9%)

Query: 25  NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCH 81
           +++    +G GS G+  + R K +G  +  + L          +  +  + L+ +L+H +
Sbjct: 5   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPN 64

Query: 82  LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAW-QSLTWTQRISAAIGVA 140
           +V      +     D + + ++++ EY   G L S I++G    Q L     +     + 
Sbjct: 65  IV-----RYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLT 119

Query: 141 RGIQFLH--TGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGS 198
             ++  H  +     V   +LK  ++ LD     K+  + L      A  + H T ++ +
Sbjct: 120 LALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGL------ARILNHDTSFAKA 173

Query: 199 INPT 202
              T
Sbjct: 174 FVGT 177

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 86.2 bits (213), Expect = 6e-21
 Identities = 29/147 (19%), Positives = 59/147 (40%), Gaps = 17/147 (11%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHST---RNFMHHIELISKLRHCHLVSALGH 88
           G GS G +Y  R ++N   +AI+ +      S    ++ +  +  + KLRH + +     
Sbjct: 24  GHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTI----Q 79

Query: 89  CFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHT 148
              CY  +      +L+ EY                + L   +  +   G  +G+ +LH+
Sbjct: 80  YRGCYLRE---HTAWLVMEYCLGSASDLLEVHK---KPLQEVEIAAVTHGALQGLAYLHS 133

Query: 149 GIVPGVFSNNLKITDILLDQNLVAKIS 175
                +   ++K  +ILL +  + K+ 
Sbjct: 134 ---HNMIHRDVKAGNILLSEPGLVKLG 157

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (202), Expect = 1e-19
 Identities = 36/188 (19%), Positives = 78/188 (41%), Gaps = 24/188 (12%)

Query: 12  RTFSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLK---MKKSHSTRNF 67
           R ++LE       +F+    +G+G  G +Y  R K +   +A++ L    ++K+      
Sbjct: 1   RQWALE-------DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQL 53

Query: 68  MHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSL 127
              +E+ S LRH +++   G+  +        +R++LI EY P GT+   +         
Sbjct: 54  RREVEIQSHLRHPNILRLYGYFHDA-------TRVYLILEYAPLGTVYREL---QKLSKF 103

Query: 128 TWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
              +  +    +A  + + H+     V   ++K  ++LL      KI+ +   + A ++ 
Sbjct: 104 DEQRTATYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSR 160

Query: 188 KVGHVTPY 195
           +       
Sbjct: 161 RTTLCGTL 168

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.5 bits (203), Expect = 1e-19
 Identities = 31/168 (18%), Positives = 66/168 (39%), Gaps = 18/168 (10%)

Query: 17  EELEEATNNFDTSAF-MGEGSKGQMYRGRLK---NGTFIAIRCLKMKKSHS-TRNFMHHI 71
           ++L    +N   +   +G G+ G + +G  +       +AI+ LK     + T   M   
Sbjct: 1   KKLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREA 60

Query: 72  ELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQ 131
           +++ +L + ++V  +G C            + L+ E    G L  ++      + +  + 
Sbjct: 61  QIMHQLDNPYIVRLIGVCQAE--------ALMLVMEMAGGGPLHKFLVGKR--EEIPVSN 110

Query: 132 RISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
                  V+ G+++L           +L   ++LL     AKIS + L
Sbjct: 111 VAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFGL 155

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (202), Expect = 1e-19
 Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 18/152 (11%)

Query: 33  GEGSKGQMYRGRLKN----GTFIAIRCLKMKKSHSTR-NFMHHIELISKLRHCHLVSALG 87
           GEG  G +++G   +       +AI+  K   S S R  F+     + +  H H+V  +G
Sbjct: 16  GEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIG 75

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLH 147
              E          +++I E    G LRS++       SL     I  A  ++  + +L 
Sbjct: 76  VITENP--------VWIIMELCTLGELRSFLQVR--KYSLDLASLILYAYQLSTALAYLE 125

Query: 148 TGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           +         ++   ++L+  N   K+  + L
Sbjct: 126 S---KRFVHRDIAARNVLVSSNDCVKLGDFGL 154

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (201), Expect = 1e-19
 Identities = 35/178 (19%), Positives = 69/178 (38%), Gaps = 15/178 (8%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCH 81
            ++D    +GEG+ G++     +     +A++ + MK++     N    I +   L H +
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64

Query: 82  LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVAR 141
           +V   GH  E        +  +L  EY   G L   I        +           +  
Sbjct: 65  VVKFYGHRREG-------NIQYLFLEYCSGGELFDRI---EPDIGMPEPDAQRFFHQLMA 114

Query: 142 GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSI 199
           G+ +LH     G+   ++K  ++LLD+    KIS + L  +     +   +    G++
Sbjct: 115 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTL 169

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 2e-19
 Identities = 35/197 (17%), Positives = 71/197 (36%), Gaps = 24/197 (12%)

Query: 17  EELEEATNNFDTSAFMGEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHSTR-NFMH 69
           +E E A      S  +G+GS G +Y G  K        T +AI+ +    S   R  F++
Sbjct: 13  DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLN 72

Query: 70  HIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI-------SEGH 122
              ++ +    H+V  LG         S      +I E +  G L+S++       +   
Sbjct: 73  EASVMKEFNCHHVVRLLGVV-------SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNP 125

Query: 123 AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL 182
                + ++ I  A  +A G+ +L+          +L   + ++ ++   KI  + +   
Sbjct: 126 VLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRD 182

Query: 183 AENAEKVGHVTPYSGSI 199
               +           +
Sbjct: 183 IYETDYYRKGGKGLLPV 199

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (198), Expect = 4e-19
 Identities = 40/182 (21%), Positives = 78/182 (42%), Gaps = 23/182 (12%)

Query: 23  TNNFDTSAF-----MGEGSKGQMYRGRLKNGT-----FIAIRCLKMKKSHSTR-NFMHHI 71
           T     S       +G G  G++Y+G LK  +      +AI+ LK   +   R +F+   
Sbjct: 1   TTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEA 60

Query: 72  ELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQ 131
            ++ +  H +++   G   +          + +I EY+ NG L  ++ E       +  Q
Sbjct: 61  GIMGQFSHHNIIRLEGVISKY-------KPMMIITEYMENGALDKFLREKDGE--FSVLQ 111

Query: 132 RISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGH 191
            +    G+A G+++L           +L   +IL++ NLV K+S + L  + E+  +  +
Sbjct: 112 LVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATY 168

Query: 192 VT 193
            T
Sbjct: 169 TT 170

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (199), Expect = 5e-19
 Identities = 33/160 (20%), Positives = 66/160 (41%), Gaps = 16/160 (10%)

Query: 33  GEGSKGQMYRGRLKN----GTFIAIRCL-KMKKSHSTRNFMHHIELISKLRHCHLVSALG 87
           G G  G +Y G L +        A++ L ++        F+    ++    H +++S LG
Sbjct: 36  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLG 95

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLH 147
            C        S     ++  Y+ +G LR++I   +   + T    I   + VA+G++FL 
Sbjct: 96  ICLR------SEGSPLVVLPYMKHGDLRNFIR--NETHNPTVKDLIGFGLQVAKGMKFLA 147

Query: 148 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 187
           +         +L   + +LD+    K++ + L     + E
Sbjct: 148 S---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE 184

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (198), Expect = 6e-19
 Identities = 26/148 (17%), Positives = 65/148 (43%), Gaps = 15/148 (10%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G+G+ G +Y    +  G  +AIR + +++       ++ I ++ + ++ ++V+ L     
Sbjct: 29  GQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV 88

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
                     ++++ EY+  G+L   ++E          Q  +      + ++FLH+   
Sbjct: 89  G-------DELWVVMEYLAGGSLTDVVTETCM----DEGQIAAVCRECLQALEFLHSN-- 135

Query: 152 PGVFSNNLKITDILLDQNLVAKISSYNL 179
             V   ++K  +ILL  +   K++ +  
Sbjct: 136 -QVIHRDIKSDNILLGMDGSVKLTDFGF 162

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 79.0 bits (194), Expect = 2e-18
 Identities = 29/188 (15%), Positives = 67/188 (35%), Gaps = 24/188 (12%)

Query: 25  NFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHST---------RNFMHHIELI 74
           N++    +G G    + R          A++ + +    S             +  ++++
Sbjct: 4   NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 63

Query: 75  SKLR-HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRI 133
            K+  H +++                   FL+F+ +  G L  +++E     +L+  +  
Sbjct: 64  RKVSGHPNIIQLKDTYETNT-------FFFLVFDLMKKGELFDYLTEK---VTLSEKETR 113

Query: 134 SAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVT 193
                +   I  LH      +   +LK  +ILLD ++  K++ +      +  EK+  V 
Sbjct: 114 KIMRALLEVICALHK---LNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVC 170

Query: 194 PYSGSINP 201
                + P
Sbjct: 171 GTPSYLAP 178

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 79.7 bits (196), Expect = 2e-18
 Identities = 32/181 (17%), Positives = 72/181 (39%), Gaps = 15/181 (8%)

Query: 24  NNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHL 82
           +++D    +G G+ G ++R      G   A + +              I+ +S LRH  L
Sbjct: 26  DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTL 85

Query: 83  VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARG 142
           V    +  + + DD   + + +I+E++  G L   +++ H    ++  + +     V +G
Sbjct: 86  V----NLHDAFEDD---NEMVMIYEFMSGGELFEKVADEH--NKMSEDEAVEYMRQVCKG 136

Query: 143 IQFLHTGIVPGVFSNNLKITDILL--DQNLVAKISSYNLPLLAENAEKVGHVTPYSGSIN 200
           +  +H          +LK  +I+    ++   K+  + L    +  + V   T  +    
Sbjct: 137 LCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAA 193

Query: 201 P 201
           P
Sbjct: 194 P 194

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.6 bits (193), Expect = 3e-18
 Identities = 27/152 (17%), Positives = 57/152 (37%), Gaps = 19/152 (12%)

Query: 33  GEGSKGQMYRGRLKN---GTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCHLVSALG 87
           G G+ G + +G  +       +A++ LK + +        +    ++ +L + ++V  +G
Sbjct: 16  GSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIG 75

Query: 88  HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLH 147
            C              L+ E    G L  ++      + +     I     V+ G+++L 
Sbjct: 76  ICEA--------ESWMLVMEMAELGPLNKYL---QQNRHVKDKNIIELVHQVSMGMKYLE 124

Query: 148 TGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
                     +L   ++LL     AKIS + L
Sbjct: 125 E---SNFVHRDLAARNVLLVTQHYAKISDFGL 153

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (192), Expect = 3e-18
 Identities = 30/154 (19%), Positives = 59/154 (38%), Gaps = 20/154 (12%)

Query: 33  GEGSKGQMYRGRLK----NGTFIAIRCLK---MKKSHSTRNFMHHIELISKLRHCHLVSA 85
           G+GS G + RG           +A++CLK   + +  +  +F+  +  +  L H +L+  
Sbjct: 17  GDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRL 76

Query: 86  LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQF 145
            G              + ++ E  P G+L   + +               A+ VA G+ +
Sbjct: 77  YGVVLTPP--------MKMVTELAPLGSLLDRLRKHQ--GHFLLGTLSRYAVQVAEGMGY 126

Query: 146 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           L +         +L   ++LL    + KI  + L
Sbjct: 127 LES---KRFIHRDLAARNLLLATRDLVKIGDFGL 157

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (192), Expect = 4e-18
 Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 28/174 (16%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNG---TFIAIRCLKMKKSHS-TRNFMHHIELISKL-R 78
           N+      +GEG+ GQ+ + R+K        AI+ +K   S    R+F   +E++ KL  
Sbjct: 10  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 69

Query: 79  HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAW-------------Q 125
           H ++++ LG C            ++L  EY P+G L  ++ +                  
Sbjct: 70  HPNIINLLGACEHR-------GYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAS 122

Query: 126 SLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           +L+  Q +  A  VARG+ +L           +L   +IL+ +N VAKI+ + L
Sbjct: 123 TLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGL 173

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (190), Expect = 5e-18
 Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 11/151 (7%)

Query: 33  GEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCHLVSALGHC 89
           G GS   +Y+G        +A   L+ +K   +  + F    E++  L+H ++V      
Sbjct: 18  GRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSW 77

Query: 90  FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTG 149
                       I L+ E + +GTL++++     ++ +      S    + +G+QFLHT 
Sbjct: 78  ESTVKGKKC---IVLVTELMTSGTLKTYL---KRFKVMKIKVLRSWCRQILKGLQFLHTR 131

Query: 150 IVPGVFSNNLKITDILL-DQNLVAKISSYNL 179
             P +   +LK  +I +       KI    L
Sbjct: 132 -TPPIIHRDLKCDNIFITGPTGSVKIGDLGL 161

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (190), Expect = 7e-18
 Identities = 35/196 (17%), Positives = 64/196 (32%), Gaps = 28/196 (14%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKSHST-RNFMHHIELISK 76
           +       +G G+ GQ+                +A++ LK   +HS  R  M  ++++  
Sbjct: 13  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 72

Query: 77  LRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI-------------SEGHA 123
           + H   V  L               + +I E+   G L +++              E   
Sbjct: 73  IGHHLNVVNLLGAC-----TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLY 127

Query: 124 WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA 183
              LT    I  +  VA+G++FL +         +L   +ILL +  V KI  + L    
Sbjct: 128 KDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDI 184

Query: 184 ENAEKVGHVTPYSGSI 199
                          +
Sbjct: 185 YKDPDYVRKGDARLPL 200

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 77.8 bits (191), Expect = 1e-17
 Identities = 21/144 (14%), Positives = 54/144 (37%), Gaps = 13/144 (9%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G G+ G ++R      G     + +            + I ++++L H  L+    +  +
Sbjct: 38  GSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLI----NLHD 93

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
            + D      + LI E++  G L   I+       ++  + I+       G++ +H    
Sbjct: 94  AFEDK---YEMVLILEFLSGGELFDRIAAED--YKMSEAEVINYMRQACEGLKHMHE--- 145

Query: 152 PGVFSNNLKITDILLDQNLVAKIS 175
             +   ++K  +I+ +    + + 
Sbjct: 146 HSIVHLDIKPENIMCETKKASSVK 169

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.9 bits (191), Expect = 1e-17
 Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 20/163 (12%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHST------RNFMHHIELISK 76
           N+F     +G G  G++Y  R    G   A++CL  K+           N    + L+S 
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 77  LRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAA 136
                +V         +       ++  I + +  G L   +S+   +           A
Sbjct: 64  GDCPFIV----CMSYAFHTPD---KLSFILDLMNGGDLHYHLSQHGVFS---EADMRFYA 113

Query: 137 IGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
             +  G++ +H      V   +LK  +ILLD++   +IS   L
Sbjct: 114 AEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGL 153

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.6 bits (188), Expect = 2e-17
 Identities = 31/183 (16%), Positives = 67/183 (36%), Gaps = 14/183 (7%)

Query: 17  EELEEATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTR-NFMHHIELI 74
           ++ E+  + +D    +G G+  ++      +    +AI+C+  K       +  + I ++
Sbjct: 2   KQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVL 61

Query: 75  SKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRIS 134
            K++H ++V       + Y        ++LI + V  G L   I E       T      
Sbjct: 62  HKIKHPNIV----ALDDIYESGG---HLYLIMQLVSGGELFDRIVEK---GFYTERDASR 111

Query: 135 AAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHV-- 192
               V   +++LH   +         +    LD++    IS + L  + +    +     
Sbjct: 112 LIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACG 171

Query: 193 TPY 195
           TP 
Sbjct: 172 TPG 174

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.1 bits (189), Expect = 2e-17
 Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 9/146 (6%)

Query: 25  NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV 83
           ++  +  +G GS G +Y+ +L  +G  +AI+ +   K    R     ++++ KL HC++V
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIV 76

Query: 84  SALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGI 143
             L + F    +      + L+ +YVP    R       A Q+L           + R +
Sbjct: 77  R-LRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSL 135

Query: 144 QFLHTGIVPGVFSNNLKITDILLDQN 169
            ++H+    G+   ++K  ++LLD +
Sbjct: 136 AYIHS---FGICHRDIKPQNLLLDPD 158

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (187), Expect = 2e-17
 Identities = 40/204 (19%), Positives = 73/204 (35%), Gaps = 38/204 (18%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLKN------GTFIAIRCLKMKKSHSTRN-FMHHIELISK 76
            N +    +G G+ G++                +A++ LK K   S R   M  ++++++
Sbjct: 37  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQ 96

Query: 77  L-RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI----------------- 118
           L  H ++V+ LG C            I+LIFEY   G L +++                 
Sbjct: 97  LGSHENIVNLLGACTLS-------GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQ 149

Query: 119 ---SEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 175
               E      LT+   +  A  VA+G++FL           +L   ++L+    V KI 
Sbjct: 150 KRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF---KSCVHRDLAARNVLVTHGKVVKIC 206

Query: 176 SYNLPLLAENAEKVGHVTPYSGSI 199
            + L     +             +
Sbjct: 207 DFGLARDIMSDSNYVVRGNARLPV 230

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (185), Expect = 4e-17
 Identities = 35/177 (19%), Positives = 68/177 (38%), Gaps = 17/177 (9%)

Query: 25  NFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLK---MKKSHSTRNFMHHIELISKLRHC 80
           +F     +GEGS   +   R L      AI+ L+   + K +         +++S+L H 
Sbjct: 9   DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 68

Query: 81  HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVA 140
             V      +  + DD    +++    Y  NG L  +I       S   T        + 
Sbjct: 69  FFV----KLYFTFQDD---EKLYFGLSYAKNGELLKYI---RKIGSFDETCTRFYTAEIV 118

Query: 141 RGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSG 197
             +++LH     G+   +LK  +ILL++++  +I+ +    +     K      + G
Sbjct: 119 SALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVG 172

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (185), Expect = 5e-17
 Identities = 34/182 (18%), Positives = 69/182 (37%), Gaps = 19/182 (10%)

Query: 26  FDTSAFMGEGSKGQMYRGRLKN-----GTFIAIRCLKMKKS-HSTRNFMHHIELISKLRH 79
           F     +G G+ G +Y+G            +AI+ L+   S  + +  +    +++ + +
Sbjct: 11  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDN 70

Query: 80  CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGV 139
            H+   LG C          S + LI + +P G L  ++ E            ++  + +
Sbjct: 71  PHVCRLLGICLT--------STVQLITQLMPFGCLLDYVREHKDNIG--SQYLLNWCVQI 120

Query: 140 ARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSI 199
           A+G+ +L       +   +L   ++L+      KI+ + L  L    EK  H       I
Sbjct: 121 AKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 177

Query: 200 NP 201
             
Sbjct: 178 KW 179

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 74.8 bits (183), Expect = 7e-17
 Identities = 25/157 (15%), Positives = 60/157 (38%), Gaps = 13/157 (8%)

Query: 23  TNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHST---RNFMHHIELISKLR 78
           ++ ++    +G G   +++  R L+    +A++ L+   +        F    +  + L 
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 65

Query: 79  HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIG 138
           H  +V+          +  +    +++ EYV   TLR  +   H    +T  + I     
Sbjct: 66  HPAIVAVYDTGEA---ETPAGPLPYIVMEYVDGVTLRDIV---HTEGPMTPKRAIEVIAD 119

Query: 139 VARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 175
             + + F H     G+   ++K  +I++      K+ 
Sbjct: 120 ACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVM 153

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 1e-16
 Identities = 24/161 (14%), Positives = 63/161 (39%), Gaps = 12/161 (7%)

Query: 21  EATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRN-FMHHIELISKLR 78
           +    +   +++GEG+ G +       N   +AI+ +   +  +     +  I+++ + R
Sbjct: 5   DVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFR 64

Query: 79  HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIG 138
           H +++           +     +   +  ++    L   +   H    L+          
Sbjct: 65  HENIIGINDIIRAPTIEQ---MKDVYLVTHLMGADLYKLLKTQH----LSNDHICYFLYQ 117

Query: 139 VARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           + RG++++H+     V   +LK +++LL+     KI  + L
Sbjct: 118 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGL 155

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 2e-16
 Identities = 35/190 (18%), Positives = 65/190 (34%), Gaps = 33/190 (17%)

Query: 33  GEGSKGQMYRGRLK------NGTFIAIRCLKMKKSHSTRN-FMHHIELISKL-RHCHLVS 84
           G G+ G++                +A++ LK     + R   M  ++++S L  H ++V+
Sbjct: 32  GAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVN 91

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAW---------------QSLTW 129
            LG C              +I EY   G L +++                      +L  
Sbjct: 92  LLGACTI-------GGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDL 144

Query: 130 TQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKV 189
              +S +  VA+G+ FL +         +L   +ILL    + KI  + L    +N    
Sbjct: 145 EDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNY 201

Query: 190 GHVTPYSGSI 199
                    +
Sbjct: 202 VVKGNARLPV 211

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (171), Expect = 4e-15
 Identities = 35/190 (18%), Positives = 77/190 (40%), Gaps = 33/190 (17%)

Query: 33  GEGSKGQMYRGRLK--------NGTFIAIRCLKMKKSHS-TRNFMHHIELISKL-RHCHL 82
           GEG+ GQ+                T +A++ LK   +     + +  +E++  + +H ++
Sbjct: 22  GEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNI 81

Query: 83  VSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI-------------SEGHAWQSLTW 129
           ++ LG C +          +++I EY   G LR ++                +  + L+ 
Sbjct: 82  INLLGACTQD-------GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSS 134

Query: 130 TQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKV 189
              +S A  VARG+++L +         +L   ++L+ ++ V KI+ + L     + +  
Sbjct: 135 KDLVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYY 191

Query: 190 GHVTPYSGSI 199
              T     +
Sbjct: 192 KKTTNGRLPV 201

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.9 bits (168), Expect = 9e-15
 Identities = 24/143 (16%), Positives = 55/143 (38%), Gaps = 14/143 (9%)

Query: 33  GEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G G  G ++R     +      + +K+K +         I +++  RH +++    H  E
Sbjct: 14  GRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVL-VKKEISILNIARHRNIL----HLHE 68

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIV 151
            +        + +IFE++    +   I+       L   + +S    V   +QFLH+   
Sbjct: 69  SFESME---ELVMIFEFISGLDIFERINTSA--FELNEREIVSYVHQVCEALQFLHS--- 120

Query: 152 PGVFSNNLKITDILLDQNLVAKI 174
             +   +++  +I+      + I
Sbjct: 121 HNIGHFDIRPENIIYQTRRSSTI 143

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (168), Expect = 1e-14
 Identities = 23/139 (16%), Positives = 50/139 (35%), Gaps = 14/139 (10%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCF 90
           G G  G++ +    +     A++ L+             +EL  +  +  H+V  +    
Sbjct: 21  GLGINGKVLQIFNKRTQEKFALKMLQDCPK-----ARREVELHWRASQCPHIVRIVDVYE 75

Query: 91  ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGI 150
             Y        + ++ E +  G L S I +    Q+ T  +       +   IQ+LH+  
Sbjct: 76  NLYAGRK---CLLIVMECLDGGELFSRIQD-RGDQAFTEREASEIMKSIGEAIQYLHS-- 129

Query: 151 VPGVFSNNLKITDILLDQN 169
              +   ++K  ++L    
Sbjct: 130 -INIAHRDVKPENLLYTSK 147

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 5e-14
 Identities = 25/160 (15%), Positives = 73/160 (45%), Gaps = 10/160 (6%)

Query: 24  NNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHC 80
           + ++  A +G+G+ G++++ R  K G  +A++ + M+          +  I+++  L+H 
Sbjct: 10  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHE 69

Query: 81  HLVSALGHCFEC-YFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGV 139
           ++V+ +  C       +     I+L+F++  +          +     T ++       +
Sbjct: 70  NVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLS---NVLVKFTLSEIKRVMQML 126

Query: 140 ARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
             G+ ++H      +   ++K  ++L+ ++ V K++ + L
Sbjct: 127 LNGLYYIHR---NKILHRDMKAANVLITRDGVLKLADFGL 163

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 6e-14
 Identities = 31/151 (20%), Positives = 65/151 (43%), Gaps = 19/151 (12%)

Query: 31  FMGEGSKGQMYRGRLKN-GTFIAIRCLKMKKSHST-----RNFMHHIELISKLRHCHLVS 84
           F+GEG    +Y+ R KN    +AI+ +K+           R  +  I+L+ +L H +++ 
Sbjct: 5   FLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII- 63

Query: 85  ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQ 144
                 + +      S I L+F+++                    +   +  +   +G++
Sbjct: 64  ---GLLDAFGHK---SNISLVFDFMETDLEVIIKDNSLVLT---PSHIKAYMLMTLQGLE 114

Query: 145 FLHTGIVPGVFSNNLKITDILLDQNLVAKIS 175
           +LH      +   +LK  ++LLD+N V K++
Sbjct: 115 YLHQ---HWILHRDLKPNNLLLDENGVLKLA 142

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 66.4 bits (161), Expect = 6e-14
 Identities = 28/158 (17%), Positives = 63/158 (39%), Gaps = 15/158 (9%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCH 81
             +     +GEG+ G +Y+ +   G   A++ ++++K         +  I ++ +L+H +
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSN 61

Query: 82  LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVAR 141
           +V                 R+ L+FE++     +           L      S  + +  
Sbjct: 62  IVKLYDVIHTKK-------RLVLVFEHLDQDLKKLLD---VCEGGLESVTAKSFLLQLLN 111

Query: 142 GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           GI + H      V   +LK  ++L+++    KI+ + L
Sbjct: 112 GIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGL 146

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (155), Expect = 6e-13
 Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 18/161 (11%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHS---TRNFMHHIELISK-LR 78
            +F     +G+GS G+++    K    F AI+ LK             M    ++S    
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 61

Query: 79  HCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIG 138
           H  L     H F  +        +F + EY+  G L   I   H       ++    A  
Sbjct: 62  HPFLT----HMFCTFQTKE---NLFFVMEYLNGGDLMYHIQSCH---KFDLSRATFYAAE 111

Query: 139 VARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           +  G+QFLH+    G+   +LK+ +ILLD++   KI+ + +
Sbjct: 112 IILGLQFLHS---KGIVYRDLKLDNILLDKDGHIKIADFGM 149

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.8 bits (152), Expect = 1e-12
 Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 17/156 (10%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLK---MKKSHSTRNFMHHIELISKLRH 79
            +F     +G GS G+++  R + NG + A++ LK   + +     +      ++S + H
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH 63

Query: 80  CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGV 139
             ++   G   +         +IF+I +Y+  G L S + +          +  +A +  
Sbjct: 64  PFIIRMWGTFQDA-------QQIFMIMDYIEGGELFSLLRKSQ-RFPNPVAKFYAAEV-- 113

Query: 140 ARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS 175
                 L       +   +LK  +ILLD+N   KI+
Sbjct: 114 ---CLALEYLHSKDIIYRDLKPENILLDKNGHIKIT 146

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 2e-12
 Identities = 30/160 (18%), Positives = 67/160 (41%), Gaps = 17/160 (10%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHST---RNFMHHIELISKLRH 79
           N+FD    +G+G+ G++   R K  G + A++ L+ +   +     + +    ++   RH
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64

Query: 80  CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGV 139
             L           +   +  R+  + EY   G L   +S        T  +       +
Sbjct: 65  PFLT-------ALKYAFQTHDRLCFVMEYANGGELFFHLSRER---VFTEERARFYGAEI 114

Query: 140 ARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
              +++LH+     V   ++K+ +++LD++   KI+ + L
Sbjct: 115 VSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGL 151

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 4e-12
 Identities = 30/158 (18%), Positives = 69/158 (43%), Gaps = 15/158 (9%)

Query: 25  NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHCH 81
           NF     +GEG+ G +Y+ R K  G  +A++ +++           +  I L+ +L H +
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query: 82  LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVAR 141
           +V       +    +   ++++L+FE++     +    +  A   +      S    + +
Sbjct: 63  IV----KLLDVIHTE---NKLYLVFEFLHQDLKKFM--DASALTGIPLPLIKSYLFQLLQ 113

Query: 142 GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           G+ F H+     V   +LK  ++L++     K++ + L
Sbjct: 114 GLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGL 148

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 4e-12
 Identities = 31/165 (18%), Positives = 69/165 (41%), Gaps = 14/165 (8%)

Query: 22  ATNNFDTSAFMGEGSKGQMYRGRLK--NGTFIAIRCLKMKKSHST--RNFMHHIELISKL 77
           A   ++  A +GEG+ G++++ R     G F+A++ ++++        + +  + ++  L
Sbjct: 5   ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHL 64

Query: 78  ---RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRIS 134
               H ++V     C     D    +++ L+FE+V                 +       
Sbjct: 65  ETFEHPNVVRLFDVCTVSRTDRE--TKLTLVFEHVDQDLTTYLDKVPE--PGVPTETIKD 120

Query: 135 AAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
               + RG+ FLH+     V   +LK  +IL+  +   K++ + L
Sbjct: 121 MMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADFGL 162

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 61.8 bits (149), Expect = 4e-12
 Identities = 24/177 (13%), Positives = 67/177 (37%), Gaps = 22/177 (12%)

Query: 24  NNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCH 81
           +++     +G G   +++    + N   + ++ LK  K    +     I+++  LR   +
Sbjct: 35  DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKK---KKIKREIKILENLRGGPN 91

Query: 82  LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVAR 141
           +++           D       L+FE+V N   +         Q+LT          + +
Sbjct: 92  IITLAD-----IVKDPVSRTPALVFEHVNNTDFKQLY------QTLTDYDIRFYMYEILK 140

Query: 142 GIQFLHTGIVPGVFSNNLKITDILLD-QNLVAKISSYNLPLLAENAEKVGH--VTPY 195
            + + H+    G+   ++K  ++++D ++   ++  + L       ++      + Y
Sbjct: 141 ALDYCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRY 194

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.4 bits (148), Expect = 5e-12
 Identities = 16/116 (13%), Positives = 38/116 (32%), Gaps = 12/116 (10%)

Query: 33  GEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFE 91
           G GS G +Y G  +  G  +AI+   +K  H         ++   ++    +  +  C  
Sbjct: 16  GSGSFGDIYLGTDIAAGEEVAIKLECVKTKH--PQLHIESKIYKMMQGGVGIPTIRWCGA 73

Query: 92  CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLH 147
                       ++ E +       +       +  +    +  A  +   I+++H
Sbjct: 74  ------EGDYNVMVMELLGPSLEDLFNFCS---RKFSLKTVLLLADQMISRIEYIH 120

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 1e-11
 Identities = 35/167 (20%), Positives = 73/167 (43%), Gaps = 23/167 (13%)

Query: 14  FSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRN------ 66
           F  E ++   + +DT   +G G    + + R K  G   A + +K +++ S+R       
Sbjct: 3   FRQENVD---DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSRED 59

Query: 67  FMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQS 126
               + ++ +++H +++       E Y +    + + LI E V  G L  +++E    +S
Sbjct: 60  IEREVSILKEIQHPNVI----TLHEVYENK---TDVILILELVAGGELFDFLAEK---ES 109

Query: 127 LTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAK 173
           LT  +       +  G+ +LH+     +   +LK  +I+L    V K
Sbjct: 110 LTEEEATEFLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPK 153

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.3 bits (140), Expect = 5e-11
 Identities = 25/160 (15%), Positives = 63/160 (39%), Gaps = 17/160 (10%)

Query: 24  NNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHSTR---NFMHHIELISKLRH 79
           + FD    +G GS G++   +  ++G   A++ L  +K    +   + ++   ++  +  
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100

Query: 80  CHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGV 139
             LV       +          ++++ EYV  G + S +         +       A  +
Sbjct: 101 PFLVKLEFSFKDNSN-------LYMVMEYVAGGEMFSHL---RRIGRFSEPHARFYAAQI 150

Query: 140 ARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
               ++LH+     +   +LK  ++L+DQ    +++ +  
Sbjct: 151 VLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGF 187

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (136), Expect = 2e-10
 Identities = 31/164 (18%), Positives = 72/164 (43%), Gaps = 20/164 (12%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRL----KNGTFIAIRCLK----MKKSHSTRNFMHHIELIS 75
            NF+    +G G+ G+++  R       G   A++ LK    ++K+ +T +     +++ 
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 83

Query: 76  KLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISA 135
            +R    +  L + F+      + +++ LI +Y+  G L + +      +  T  +    
Sbjct: 84  HIRQSPFLVTLHYAFQ------TETKLHLILDYINGGELFTHL---SQRERFTEHEVQIY 134

Query: 136 AIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
              +   ++ LH     G+   ++K+ +ILLD N    ++ + L
Sbjct: 135 VGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVLTDFGL 175

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 3e-10
 Identities = 25/159 (15%), Positives = 67/159 (42%), Gaps = 16/159 (10%)

Query: 24  NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHST--RNFMHHIELISKLRHC 80
             ++    +GEG+ G +++ + +     +A++ +++         + +  I L+ +L+H 
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK 61

Query: 81  HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVA 140
           ++V                 ++ L+FE+      + + S              S    + 
Sbjct: 62  NIVRLHDVLHSDK-------KLTLVFEFCDQDLKKYFDSCNGDLD---PEIVKSFLFQLL 111

Query: 141 RGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 179
           +G+ F H+     V   +LK  ++L+++N   K++++ L
Sbjct: 112 KGLGFCHS---RNVLHRDLKPQNLLINRNGELKLANFGL 147

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 3e-09
 Identities = 19/143 (13%), Positives = 48/143 (33%), Gaps = 10/143 (6%)

Query: 9   PAYRTFSLEELE-EATNNFDTSAFMGEGSKGQMYRGR-LKNGTFIAIRCLKMKKSHST-- 64
           P +    L +   E    +   + +G G+ G +      K G  +A++ L          
Sbjct: 2   PTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHA 61

Query: 65  RNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAW 124
           +     + L+  ++H +++  L         +        +  ++    L + +      
Sbjct: 62  KRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFND--VYLVTHLMGADLNNIVKCQK-- 117

Query: 125 QSLTWTQRISAAIGVARGIQFLH 147
             LT          + RG++++H
Sbjct: 118 --LTDDHVQFLIYQILRGLKYIH 138

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 45.2 bits (106), Expect = 1e-06
 Identities = 14/153 (9%), Positives = 43/153 (28%), Gaps = 26/153 (16%)

Query: 32  MGEGSKGQMYRGRLKNGTFIAI----------RCLKMKKSHSTRNFMHHIELISKLRHCH 81
           MGEG +  ++    +      +          + +K K+ +   +F       ++     
Sbjct: 8   MGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRA 67

Query: 82  LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVAR 141
           L    G      +         ++ E           ++      +     +     +  
Sbjct: 68  LQKLQGLAVPKVYA---WEGNAVLMEL--------IDAKELYRVRVENPDEV--LDMILE 114

Query: 142 GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI 174
            +   +     G+   +L   ++L+ +  +  I
Sbjct: 115 EVAKFYH---RGIVHGDLSQYNVLVSEEGIWII 144

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	206
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.98
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.95
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.91
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.79
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	98.29
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	98.25
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	97.92
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	97.63
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	97.62

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-41  Score=257.83  Aligned_cols=169  Identities=21%  Similarity=0.305  Sum_probs=145.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|+..+.||+|+||.||+|..+ +|+.||+|++..... ...+.+.+|++++++++||||+++++++.+       .+
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~-------~~   76 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRRE-------GN   76 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEE-------TT
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeecc-------Cc
Confidence            457999999999999999999986 799999999976542 334568899999999999999999999876       67


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      .+++||||+++|+|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+|||+++++.+||+|||+|
T Consensus        77 ~~~ivmEy~~gg~L~~~l~~~---~~l~e~~~~~i~~qi~~al~ylH~---~~IiHrDiKp~NILl~~~~~~KL~DFG~a  150 (271)
T d1nvra_          77 IQYLFLEYCSGGELFDRIEPD---IGMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLA  150 (271)
T ss_dssp             EEEEEEECCTTEEGGGGSBTT---TBCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCTTC
T ss_pred             eeEEEEeccCCCcHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHH---cCCccCcccHHHEEECCCCCEEEccchhh
Confidence            899999999999999998765   469999999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccc---cccccccCccccCCCCC
Q 028629          181 LLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      +......   ......||+.|||||..
T Consensus       151 ~~~~~~~~~~~~~~~~GT~~Y~APE~~  177 (271)
T d1nvra_         151 TVFRYNNRERLLNKMCGTLPYVAPELL  177 (271)
T ss_dssp             EECEETTEECCBCCCCSCGGGSCTHHH
T ss_pred             eeeccCCccccccceeeCcCccCHhHh
Confidence            8765332   33456899999999953

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-41  Score=256.56  Aligned_cols=168  Identities=17%  Similarity=0.309  Sum_probs=150.3

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      .++|+..+.||+|+||.||+|... +|+.||+|.+........+.+.+|+.++++++||||+++++++.+       .+.
T Consensus        19 ~~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-------~~~   91 (293)
T d1yhwa1          19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-------GDE   91 (293)
T ss_dssp             TTTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEE-------TTE
T ss_pred             ccccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEE-------CCE
Confidence            357999999999999999999975 799999999987666667789999999999999999999999876       668


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      +++||||+++++|.+++...    .+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+|+
T Consensus        92 ~~ivmEy~~gg~L~~~~~~~----~l~~~~~~~i~~qi~~aL~yLH~---~~iiHrDiKp~NILl~~~~~vkl~DFG~a~  164 (293)
T d1yhwa1          92 LWVVMEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCA  164 (293)
T ss_dssp             EEEEEECCTTCBHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             EEEEEEecCCCcHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHHH---CCCcccCCcHHHeEECCCCcEeeccchhhe
Confidence            99999999999999988763    48999999999999999999999   799999999999999999999999999998


Q ss_pred             ccccc-ccccccccCccccCCCCC
Q 028629          182 LAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      ..... .......||+.|+|||..
T Consensus       165 ~~~~~~~~~~~~~gt~~Y~aPE~~  188 (293)
T d1yhwa1         165 QITPEQSKRSTMVGTPYWMAPEVV  188 (293)
T ss_dssp             ECCSTTCCBCCCCSCGGGCCHHHH
T ss_pred             eeccccccccccccCCCccChhhh
Confidence            76543 344556899999999964

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-40  Score=255.85  Aligned_cols=169  Identities=15%  Similarity=0.316  Sum_probs=150.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      .+.|++.+.||+|+||.||+|... ++..||+|.++.......+.+.+|++++++++||||+++++++.+       .+.
T Consensus        11 ~d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-------~~~   83 (288)
T d2jfla1          11 EDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYY-------ENN   83 (288)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEE-------TTE
T ss_pred             ccCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEee-------CCe
Confidence            346899999999999999999986 799999999987766777889999999999999999999999876       678


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      +++||||+++|+|.+++....  ..+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+|.
T Consensus        84 ~~lvmEy~~~g~L~~~~~~~~--~~l~e~~~~~i~~qi~~gL~ylH~---~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~  158 (288)
T d2jfla1          84 LWILIEFCAGGAVDAVMLELE--RPLTESQIQVVCKQTLDALNYLHD---NKIIHRDLKAGNILFTLDGDIKLADFGVSA  158 (288)
T ss_dssp             EEEEEECCTTEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             EEEEEecCCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHH---CCEEEeecChhheeECCCCCEEEEechhhh
Confidence            999999999999999876532  458999999999999999999999   799999999999999999999999999997


Q ss_pred             ccccc-ccccccccCccccCCCC
Q 028629          182 LAENA-EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       182 ~~~~~-~~~~~~~~~~~y~aPE~  203 (206)
                      ..... .......||+.|+|||.
T Consensus       159 ~~~~~~~~~~~~~Gt~~y~APE~  181 (288)
T d2jfla1         159 KNTRTIQRRDSFIGTPYWMAPEV  181 (288)
T ss_dssp             ECHHHHHHHTCCCSCCTTCCHHH
T ss_pred             ccCCCcccccccccccccCCHHH
Confidence            65443 34445789999999995

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-40  Score=251.36  Aligned_cols=167  Identities=20%  Similarity=0.351  Sum_probs=148.0

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC---CCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ++|+..+.||+|+||.||+|+.. +++.||+|++...   .....+.+.+|+.++++++||||+++++++.+       .
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-------~   78 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHD-------A   78 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-------S
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEE-------C
Confidence            46999999999999999999986 7999999998743   23445678899999999999999999999876       6


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +.+++||||+++|+|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+|||+++++.+||+|||+
T Consensus        79 ~~~~ivmEy~~~g~L~~~l~~~---~~l~e~~~~~i~~qi~~al~~lH~---~~ivHrDiKp~Nill~~~~~~kl~DFG~  152 (263)
T d2j4za1          79 TRVYLILEYAPLGTVYRELQKL---SKFDEQRTATYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGW  152 (263)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCCS
T ss_pred             CEEEEEEeecCCCcHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeeeeccccceecCCCCEeecccce
Confidence            7899999999999999999765   458999999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |....... .....||+.|+|||..
T Consensus       153 a~~~~~~~-~~~~~Gt~~Y~APE~~  176 (263)
T d2j4za1         153 SVHAPSSR-RTTLCGTLDYLPPEMI  176 (263)
T ss_dssp             CSCCCCCC-CEETTEEGGGCCHHHH
T ss_pred             eeecCCCc-ccccCCCCcccCHHHH
Confidence            98776543 3457899999999964

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.9e-41  Score=256.90  Aligned_cols=175  Identities=18%  Similarity=0.359  Sum_probs=151.0

Q ss_pred             HHHHHHhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           17 EELEEATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        17 ~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      ++|+...++|+..+.||+|+||.||+|.+. ++..||+|+++.. ....+++.+|+.++++++||||+++++++.+    
T Consensus        10 ~~wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~-~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~----   84 (287)
T d1opja_          10 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR----   84 (287)
T ss_dssp             CTTBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTT-CSCHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred             cccEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCc-cchHHHHHHHHHHHHhCCCCCEecCCccEee----
Confidence            345556778999999999999999999986 6889999998754 3456789999999999999999999999865    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                         .+..+++|||+++|+|.+++..... ..+++..+..++.|++.||.|||+   .+|+||||||+|||+++++.+||+
T Consensus        85 ---~~~~~iv~E~~~~g~l~~~l~~~~~-~~~~~~~~~~i~~qi~~gL~yLH~---~~iiHrDlKp~NILl~~~~~~Kl~  157 (287)
T d1opja_          85 ---EPPFYIITEFMTYGNLLDYLRECNR-QEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVA  157 (287)
T ss_dssp             ---SSSCEEEEECCTTCBHHHHHHHSCT-TTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEEC
T ss_pred             ---CCeeEEEeecccCcchHHHhhhccc-cchHHHHHHHHHHHHHHHHHHHHH---CCcccCccccCeEEECCCCcEEEc
Confidence               5678999999999999999876433 568999999999999999999999   799999999999999999999999


Q ss_pred             cCCccccccccc--cccccccCccccCCCC
Q 028629          176 SYNLPLLAENAE--KVGHVTPYSGSINPTN  203 (206)
Q Consensus       176 df~~a~~~~~~~--~~~~~~~~~~y~aPE~  203 (206)
                      |||+|+......  ......++..|+|||.
T Consensus       158 DFG~a~~~~~~~~~~~~~~~g~~~y~aPE~  187 (287)
T d1opja_         158 DFGLSRLMTGDTYTAHAGAKFPIKWTAPES  187 (287)
T ss_dssp             CCCCTTTCCSSSSEEETTEEECGGGCCHHH
T ss_pred             cccceeecCCCCceeeccccccccccChHH
Confidence            999999775443  2233457788999995

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-40  Score=258.57  Aligned_cols=168  Identities=13%  Similarity=0.279  Sum_probs=146.2

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|+..+.||+|+||.||+|+.. +|..||+|+++... ......+.+|+.+|++++||||+++++++.+       .+
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~-------~~   77 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-------DG   77 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEEC-------SS
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-------CC
Confidence            568999999999999999999976 79999999997653 3345678899999999999999999999976       67


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      .+++||||+++++|.+++...   ..+++..+..++.|++.||.|||+.  .+|+||||||+|||+++++.+||+|||+|
T Consensus        78 ~~~iVmEy~~gg~L~~~l~~~---~~l~~~~~~~~~~qil~aL~yLH~~--~~IiHRDiKP~NILl~~~~~vkl~DFGla  152 (322)
T d1s9ja_          78 EISICMEHMDGGSLDQVLKKA---GRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVS  152 (322)
T ss_dssp             EEEEEEECCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEEECCCCCC
T ss_pred             EEEEEEEcCCCCcHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHHh--CCEEccccCHHHeeECCCCCEEEeeCCCc
Confidence            899999999999999999765   3589999999999999999999971  28999999999999999999999999999


Q ss_pred             ccccccccccccccCccccCCCC
Q 028629          181 LLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       181 ~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      +...+. ......||++|+|||.
T Consensus       153 ~~~~~~-~~~~~~GT~~Y~APEv  174 (322)
T d1s9ja_         153 GQLIDS-MANSFVGTRSYMSPER  174 (322)
T ss_dssp             HHHHHH-TC---CCSSCCCCHHH
T ss_pred             cccCCC-ccccccCCccccCchH
Confidence            876543 2345789999999995

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=1e-39  Score=256.51  Aligned_cols=171  Identities=18%  Similarity=0.278  Sum_probs=152.4

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ..++|++.+.||+|+||.||+|... +|+.||+|++........+.+.+|+.++++++||||+++++++.+       .+
T Consensus        24 il~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-------~~   96 (350)
T d1koaa2          24 VLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFED-------DN   96 (350)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEE-------TT
T ss_pred             CccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEE-------CC
Confidence            3578999999999999999999976 799999999976655556778999999999999999999999876       67


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC--CCceeEccCC
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ--NLVAKISSYN  178 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~--~~~~kl~df~  178 (206)
                      .+++||||+++|+|.+++....  ..+++..+..++.||+.||.|||+   .+|+||||||+|||++.  ++.+||+|||
T Consensus        97 ~~~ivmE~~~gg~L~~~l~~~~--~~l~e~~~~~i~~qi~~aL~ylH~---~~iiHrDiKp~NIll~~~~~~~vkL~DFG  171 (350)
T d1koaa2          97 EMVMIYEFMSGGELFEKVADEH--NKMSEDEAVEYMRQVCKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFG  171 (350)
T ss_dssp             EEEEEECCCCSCBHHHHHTCTT--SCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTSCCEEECCCT
T ss_pred             EEEEEEEcCCCCCHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHh---cCCeeeeechhHeeeccCCCCeEEEeecc
Confidence            8999999999999999886543  358999999999999999999999   79999999999999974  5789999999


Q ss_pred             ccccccccccccccccCccccCCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +|+............||+.|||||..
T Consensus       172 ~a~~~~~~~~~~~~~gT~~Y~aPEv~  197 (350)
T d1koaa2         172 LTAHLDPKQSVKVTTGTAEFAAPEVA  197 (350)
T ss_dssp             TCEECCTTSCEEEECSCTTTCCHHHH
T ss_pred             hheecccccccceecCcccccCHHHH
Confidence            99988777666678999999999953

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-40  Score=252.00  Aligned_cols=173  Identities=24%  Similarity=0.389  Sum_probs=147.9

Q ss_pred             HHHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        18 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      +|+...++|+..+.||+|+||.||+|.++++..||+|+++.. ....+.+.+|++++++++||||+++++++.+      
T Consensus         7 ~wei~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~------   79 (272)
T d1qpca_           7 EWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ------   79 (272)
T ss_dssp             TTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT-SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS------
T ss_pred             CeecCHHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccC-cCCHHHHHHHHHHHHhCCCCCEeEEEeeecc------
Confidence            334456789999999999999999999988889999999744 3455789999999999999999999998743      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                        +..++||||+++|+|.+++..... ..+++..++.++.|++.||.|||+   .+|+||||||+|||+++++.+||+||
T Consensus        80 --~~~~iv~Ey~~~g~L~~~~~~~~~-~~l~~~~~~~i~~qi~~gl~~lH~---~~ivHrDiKp~NIll~~~~~~Kl~DF  153 (272)
T d1qpca_          80 --EPIYIITEYMENGSLVDFLKTPSG-IKLTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADF  153 (272)
T ss_dssp             --SSCEEEEECCTTCBHHHHTTSHHH-HTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCC
T ss_pred             --CCeEEEEEeCCCCcHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCccchhheeeecccceeeccc
Confidence              457899999999999997754322 458999999999999999999999   79999999999999999999999999


Q ss_pred             Cccccccccc--cccccccCccccCCCC
Q 028629          178 NLPLLAENAE--KVGHVTPYSGSINPTN  203 (206)
Q Consensus       178 ~~a~~~~~~~--~~~~~~~~~~y~aPE~  203 (206)
                      |+|+...+..  ......++..|+|||.
T Consensus       154 Gla~~~~~~~~~~~~~~~gt~~y~APE~  181 (272)
T d1qpca_         154 GLARLIEDNEYTAREGAKFPIKWTAPEA  181 (272)
T ss_dssp             TTCEECSSSCEECCTTCCCCTTTSCHHH
T ss_pred             cceEEccCCccccccccCCcccccChHH
Confidence            9999876543  3334578889999995

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-39  Score=247.56  Aligned_cols=169  Identities=21%  Similarity=0.353  Sum_probs=138.3

Q ss_pred             hcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      .++|+..+.||+|+||.||+|.+.++..||+|+++.. ....+++.+|++++++++||||+++++++..       .+..
T Consensus         4 p~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~-~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-------~~~~   75 (263)
T d1sm2a_           4 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE-------QAPI   75 (263)
T ss_dssp             CSCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSS-SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-------SSSC
T ss_pred             hHHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCC-cCcHHHHHHHHHHHHhcCCCCcccccceecc-------CCce
Confidence            4678999999999999999999888889999999754 3445789999999999999999999999875       5678


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      +++|||+++|+|.+++....  ..+++..++.++.|++.||.|||+   .+|+||||||+|||+++++.+||+|||+++.
T Consensus        76 ~lv~E~~~~g~L~~~l~~~~--~~~~~~~~~~i~~qia~gl~~lH~---~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~  150 (263)
T d1sm2a_          76 CLVFEFMEHGCLSDYLRTQR--GLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRF  150 (263)
T ss_dssp             EEEEECCTTCBHHHHHHTTT--TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCTTCSGGGEEECGGGCEEECSCC----
T ss_pred             EEEEEecCCCcHHHHhhccc--cCCCHHHHHHHHHHHHHHHHhhhc---cceeecccchhheeecCCCCeEecccchhee
Confidence            99999999999999887653  458899999999999999999999   7999999999999999999999999999987


Q ss_pred             ccccc--cccccccCccccCCCCC
Q 028629          183 AENAE--KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       183 ~~~~~--~~~~~~~~~~y~aPE~~  204 (206)
                      .....  ......+|..|+|||..
T Consensus       151 ~~~~~~~~~~~~~gt~~y~aPE~l  174 (263)
T d1sm2a_         151 VLDDQYTSSTGTKFPVKWASPEVF  174 (263)
T ss_dssp             --------------CTTSCCHHHH
T ss_pred             ccCCCceeecceecCcccCChHHh
Confidence            65443  22335778899999953

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-40  Score=250.81  Aligned_cols=168  Identities=18%  Similarity=0.294  Sum_probs=145.3

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .+|++.+.||+|+||.||+|... +++.||+|++....   ....+.+.+|++++++++||||+++++++.+       .
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-------~   80 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQD-------D   80 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEEC-------S
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEE-------C
Confidence            56999999999999999999986 79999999997532   3445678999999999999999999998865       6


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +.++++|||+++|+|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+|||+++++.+||+|||+
T Consensus        81 ~~~~ivmEy~~gg~L~~~~~~~---~~l~e~~~~~~~~qi~~al~ylH~---~~iiHrDiKp~NIll~~~~~vkl~DFG~  154 (288)
T d1uu3a_          81 EKLYFGLSYAKNGELLKYIRKI---GSFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGT  154 (288)
T ss_dssp             SEEEEEECCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTT
T ss_pred             CEEEEEEEccCCCCHHHhhhcc---CCCCHHHHHHHHHHHHHHHHhhcc---ccEEcCcCCccccccCCCceEEeccccc
Confidence            7899999999999999988765   458999999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccc---cccccccCccccCCCCC
Q 028629          180 PLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      |+......   ......||+.|+|||..
T Consensus       155 a~~~~~~~~~~~~~~~~GT~~Y~APE~~  182 (288)
T d1uu3a_         155 AKVLSPESKQARANSFVGTAQYVSPELL  182 (288)
T ss_dssp             CEECC----------CCCCGGGCCHHHH
T ss_pred             ceecccCCcccccccccCCccccCceee
Confidence            98765332   33446799999999953

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.7e-40  Score=252.82  Aligned_cols=169  Identities=19%  Similarity=0.313  Sum_probs=131.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .+.|+..+.||+|+||.||+|... +++.||+|++.... ......+.+|+.++++++||||+++++++.+       .+
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~-------~~   80 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYES-------GG   80 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEEC-------SS
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-------CC
Confidence            567999999999999999999976 79999999997554 2334567789999999999999999999865       67


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec---CCCceeEccC
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD---QNLVAKISSY  177 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~---~~~~~kl~df  177 (206)
                      .++++|||+++++|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+||+++   +++.+||+||
T Consensus        81 ~~~lvmE~~~gg~L~~~l~~~---~~l~e~~~~~~~~qi~~al~ylH~---~~iiHrDiKp~Nil~~~~~~~~~vkl~DF  154 (307)
T d1a06a_          81 HLYLIMQLVSGGELFDRIVEK---GFYTERDASRLIFQVLDAVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDF  154 (307)
T ss_dssp             EEEEEECCCCSCBHHHHHHTC---SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSTTCCEEECCC
T ss_pred             EEEEEEeccCCCcHHHhhhcc---cCCCHHHHHHHHHHHHHHHHhhhh---ceeeeEEecccceeecccCCCceEEEecc
Confidence            899999999999999999765   469999999999999999999999   7999999999999995   4689999999


Q ss_pred             CccccccccccccccccCccccCCCCC
Q 028629          178 NLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       178 ~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |+|+............||+.|+|||..
T Consensus       155 G~a~~~~~~~~~~~~~GT~~y~APE~~  181 (307)
T d1a06a_         155 GLSKMEDPGSVLSTACGTPGYVAPEVL  181 (307)
T ss_dssp             ------------------CTTSCHHHH
T ss_pred             ceeEEccCCCeeeeeeeCccccCcHHH
Confidence            999988776666667899999999963

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-39  Score=253.57  Aligned_cols=170  Identities=18%  Similarity=0.295  Sum_probs=150.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|+.++.||+|+||.||+|+.. +|+.||+|++++..   ....+.+.+|+.+|++++||||+++++++.+       
T Consensus         4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~-------   76 (337)
T d1o6la_           4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQT-------   76 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEEC-------
T ss_pred             hHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeecc-------
Confidence            467999999999999999999976 89999999997542   3456778899999999999999999999876       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+.+++||||+++|+|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+|||+++++.+||+|||
T Consensus        77 ~~~~~iv~ey~~gg~L~~~~~~~---~~~~e~~~~~~~~qil~al~ylH~---~~iiHRDlKP~NILl~~~g~vkl~DFG  150 (337)
T d1o6la_          77 HDRLCFVMEYANGGELFFHLSRE---RVFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFG  150 (337)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCT
T ss_pred             ccccccceeccCCCchhhhhhcc---cCCcHHHHHHHHHHHhhhhhhhhh---cCccccccCHHHeEecCCCCEEEeecc
Confidence            67899999999999999998875   458899999999999999999999   899999999999999999999999999


Q ss_pred             ccccccc-cccccccccCccccCCCCCC
Q 028629          179 LPLLAEN-AEKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       179 ~a~~~~~-~~~~~~~~~~~~y~aPE~~~  205 (206)
                      +|+.... .......+||+.|+|||...
T Consensus       151 ~a~~~~~~~~~~~~~~GT~~Y~aPE~~~  178 (337)
T d1o6la_         151 LCKEGISDGATMKTFCGTPEYLAPEVLE  178 (337)
T ss_dssp             TCBCSCCTTCCBCCCEECGGGCCGGGGS
T ss_pred             cccccccCCcccccceeCHHHhhhhhcc
Confidence            9987644 34555678999999999753

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=2.1e-39  Score=254.83  Aligned_cols=170  Identities=17%  Similarity=0.252  Sum_probs=152.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      .++|+..+.||+|+||.||+|... +|+.||+|++..........+.+|++++++++||||+++++++.+       .+.
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-------~~~  100 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFED-------KYE  100 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEEC-------SSE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-------CCE
Confidence            457999999999999999999976 799999999986655556678899999999999999999999865       678


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec--CCCceeEccCCc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD--QNLVAKISSYNL  179 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~--~~~~~kl~df~~  179 (206)
                      +++||||+++++|.+.+....  ..+++..++.++.|++.||.|||+   .+|+||||||+|||++  .++.+||+|||+
T Consensus       101 ~~ivmE~~~gg~L~~~~~~~~--~~l~e~~~~~i~~qi~~aL~ylH~---~~iiHRDiKp~NILl~~~~~~~vkL~DFGl  175 (352)
T d1koba_         101 MVLILEFLSGGELFDRIAAED--YKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFGL  175 (352)
T ss_dssp             EEEEEECCCCCBHHHHTTCTT--CCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTCCCEEECCCTT
T ss_pred             EEEEEEcCCCChHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccccccccccccCCCeEEEeeccc
Confidence            999999999999998776543  458999999999999999999999   7999999999999998  568999999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |.............+|+.|+|||..
T Consensus       176 a~~~~~~~~~~~~~gt~~y~aPE~~  200 (352)
T d1koba_         176 ATKLNPDEIVKVTTATAEFAAPEIV  200 (352)
T ss_dssp             CEECCTTSCEEEECSSGGGCCHHHH
T ss_pred             ceecCCCCceeeccCcccccCHHHH
Confidence            9988877767778999999999964

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-40  Score=251.49  Aligned_cols=177  Identities=17%  Similarity=0.294  Sum_probs=135.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC--ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ..+|+..+.||+|+||.||+|+.. +|+.||+|.+.....  ...+.+.+|++++++++||||+++++++.+     ...
T Consensus         3 ~edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-----~~~   77 (269)
T d2java1           3 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIID-----RTN   77 (269)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC--------
T ss_pred             chhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEe-----CCC
Confidence            357999999999999999999976 799999999976542  334568899999999999999999998864     224


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCC-CCcccCHHHHHHHHHHHHHHHHHHhcCC--CCceeccCCccccEEecCCCceeEcc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGH-AWQSLTWTQRISAAIGVARGIQFLHTGI--VPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~--~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                      +.++++|||+++|+|.+++.... ....+++..++.++.|++.||.|||+..  ..+|+||||||+|||+++++.+||+|
T Consensus        78 ~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~D  157 (269)
T d2java1          78 TTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGD  157 (269)
T ss_dssp             -CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECC
T ss_pred             CEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEee
Confidence            56899999999999999886421 1146999999999999999999999820  12499999999999999999999999


Q ss_pred             CCccccccccc-cccccccCccccCCCCC
Q 028629          177 YNLPLLAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       177 f~~a~~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ||+|+...... ......||+.|+|||..
T Consensus       158 FG~a~~~~~~~~~~~~~~gt~~Y~APE~l  186 (269)
T d2java1         158 FGLARILNHDTSFAKAFVGTPYYMSPEQM  186 (269)
T ss_dssp             HHHHHHC-----------CCCSCCCHHHH
T ss_pred             ccceeecccCCCccccCCCCcccCCHHHH
Confidence            99999876543 34457899999999964

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.4e-39  Score=251.77  Aligned_cols=164  Identities=18%  Similarity=0.304  Sum_probs=144.2

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc---cHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH---STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ..|+..+.||+|+||.||+|+.. +++.||+|.+......   ..+.+.+|+.++++++||||+++++++.+       .
T Consensus        15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-------~   87 (309)
T d1u5ra_          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR-------E   87 (309)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-------T
T ss_pred             HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEE-------C
Confidence            45999999999999999999976 7899999999765432   23568899999999999999999999876       6


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      +.++++|||+.++++..++...   ..+++..++.++.|++.||.|||+   .+|+||||||+|||+++++.+||+|||+
T Consensus        88 ~~~~iv~E~~~~g~l~~~~~~~---~~l~e~~~~~i~~qi~~aL~yLH~---~~iiHrDiKp~NILl~~~~~~Kl~DFG~  161 (309)
T d1u5ra_          88 HTAWLVMEYCLGSASDLLEVHK---KPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGS  161 (309)
T ss_dssp             TEEEEEEECCSEEHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTEEEECCCTT
T ss_pred             CEEEEEEEecCCCchHHHHHhC---CCCCHHHHHHHHHHHHHHHHHHHh---CCEeccCCCcceEEECCCCCEEEeeccc
Confidence            7899999999998887766655   468999999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      |......   ....||+.|||||.
T Consensus       162 a~~~~~~---~~~~GT~~Y~APE~  182 (309)
T d1u5ra_         162 ASIMAPA---NSFVGTPYWMAPEV  182 (309)
T ss_dssp             CBSSSSB---CCCCSCGGGCCHHH
T ss_pred             ccccCCC---CccccCccccCHHH
Confidence            9876543   34689999999995

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-40  Score=250.26  Aligned_cols=169  Identities=17%  Similarity=0.344  Sum_probs=140.9

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ...++|...+.||+|+||.||+|+++  ..||+|+++...  ....+.+.+|+.++++++||||+++++++..       
T Consensus         5 i~~~~~~~~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-------   75 (276)
T d1uwha_           5 IPDGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-------   75 (276)
T ss_dssp             CCTTCCCCCSEEEECSSCEEEEEESS--SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-------
T ss_pred             cccccEEEEEEEeeCCCcEEEEEEEC--CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-------
Confidence            44678999999999999999999864  359999987543  4445788999999999999999999998643       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                       +.++++|||+++|+|.+++....  ..+++..+..++.|++.||.|||+   .+|+||||||+|||+++++.+||+|||
T Consensus        76 -~~~~lv~Ey~~~g~L~~~l~~~~--~~~~~~~~~~i~~qi~~gl~yLH~---~~ivHrDlKp~NiLl~~~~~~Kl~DFG  149 (276)
T d1uwha_          76 -PQLAIVTQWCEGSSLYHHLHIIE--TKFEMIKLIDIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFG  149 (276)
T ss_dssp             -SSCEEEEECCCEEEHHHHHHTSC--CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTSSEEECCCC
T ss_pred             -cEEEEEEecCCCCCHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHhc---CCEeccccCHHHEEEcCCCCEEEcccc
Confidence             45899999999999999997543  458999999999999999999999   799999999999999999999999999


Q ss_pred             cccccccc---ccccccccCccccCCCCC
Q 028629          179 LPLLAENA---EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~---~~~~~~~~~~~y~aPE~~  204 (206)
                      +|+.....   .......||+.|||||..
T Consensus       150 la~~~~~~~~~~~~~~~~gt~~y~APE~l  178 (276)
T d1uwha_         150 LATVKSRWSGSHQFEQLSGSILWMAPEVI  178 (276)
T ss_dssp             CSCC------------CCCCGGGCCHHHH
T ss_pred             ceeeccccCCcccccccccCcccCCHHHH
Confidence            99876543   233446889999999953

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-39  Score=249.57  Aligned_cols=167  Identities=22%  Similarity=0.350  Sum_probs=148.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecC---CCccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK---KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|++.+.||+|+||.||+|+.+ +|+.||+|++...   .....+.+.+|+.+++.++||||+++++++.+       
T Consensus         3 l~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-------   75 (316)
T d1fota_           3 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQD-------   75 (316)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEEC-------
T ss_pred             hhHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEee-------
Confidence            356999999999999999999986 7999999999753   23446778899999999999999999999876       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+.+++||||++++++.+++...   ..+++.....++.|++.||.|||+   .+|+||||||+|||+++++.+||+|||
T Consensus        76 ~~~~~ivmE~~~gg~l~~~~~~~---~~~~~~~~~~~~~qi~~al~~lH~---~~iiHrDiKp~NILl~~~g~vkL~DFG  149 (316)
T d1fota_          76 AQQIFMIMDYIEGGELFSLLRKS---QRFPNPVAKFYAAEVCLALEYLHS---KDIIYRDLKPENILLDKNGHIKITDFG  149 (316)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHHT---SSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTSCEEECCCS
T ss_pred             CCeeeeEeeecCCcccccccccc---ccccccHHHHHHHHHHHhhhhhcc---CcEEccccCchheeEcCCCCEEEecCc
Confidence            67899999999999999998876   457888999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccccccccccCccccCCCCC
Q 028629          179 LPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +|+......  ....||+.|+|||..
T Consensus       150 ~a~~~~~~~--~~~~Gt~~Y~APE~l  173 (316)
T d1fota_         150 FAKYVPDVT--YTLCGTPDYIAPEVV  173 (316)
T ss_dssp             SCEECSSCB--CCCCSCTTTCCHHHH
T ss_pred             cceEecccc--ccccCcccccCHHHH
Confidence            999876543  347899999999964

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-38  Score=242.58  Aligned_cols=168  Identities=21%  Similarity=0.267  Sum_probs=142.3

Q ss_pred             cccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEE
Q 028629           27 DTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (206)
Q Consensus        27 ~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~  103 (206)
                      +..+.||+|+||.||+|... ++..||+|.+....  ....+.+.+|++++++++||||+++++++....   .....++
T Consensus        12 ~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~---~~~~~~~   88 (270)
T d1t4ha_          12 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTV---KGKKCIV   88 (270)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEES---SSCEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeecc---ccCCEEE
Confidence            66778999999999999986 78899999997543  233457889999999999999999999875411   2245689


Q ss_pred             EEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCc--eeccCCccccEEec-CCCceeEccCCcc
Q 028629          104 LIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPG--VFSNNLKITDILLD-QNLVAKISSYNLP  180 (206)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~--i~h~dl~p~nil~~-~~~~~kl~df~~a  180 (206)
                      ++|||+++++|.+++...   ..+++..+..++.|++.||.|||+   .+  |+||||||+|||++ +++.+||+|||+|
T Consensus        89 ivmE~~~~g~L~~~l~~~---~~~~~~~~~~~~~qi~~gl~yLH~---~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla  162 (270)
T d1t4ha_          89 LVTELMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQFLHT---RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLA  162 (270)
T ss_dssp             EEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHT---SSSCCCCSCCCGGGEEESSTTSCEEECCTTGG
T ss_pred             EEEeCCCCCcHHHHHhcc---ccccHHHHHHHHHHHHHHHHHHHH---CCCCEEeCCcChhhceeeCCCCCEEEeecCcc
Confidence            999999999999999765   458999999999999999999998   56  99999999999997 5789999999999


Q ss_pred             ccccccccccccccCccccCCCCC
Q 028629          181 LLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +..... ......||+.|+|||..
T Consensus       163 ~~~~~~-~~~~~~GT~~Y~aPE~~  185 (270)
T d1t4ha_         163 TLKRAS-FAKAVIGTPEFMAPEMY  185 (270)
T ss_dssp             GGCCTT-SBEESCSSCCCCCGGGG
T ss_pred             eeccCC-ccCCcccCccccCHHHh
Confidence            875543 33457899999999964

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-38  Score=244.97  Aligned_cols=169  Identities=19%  Similarity=0.291  Sum_probs=150.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC------CccHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK------SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~------~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      .++|+..+.||+|+||.||+|..+ +|+.||+|++++..      ....+.+.+|+.+|++++||||+++++++.+    
T Consensus         9 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~----   84 (293)
T d1jksa_           9 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYEN----   84 (293)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC----
T ss_pred             ccCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE----
Confidence            467999999999999999999986 79999999997543      2235678999999999999999999999865    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC----c
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL----V  171 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~----~  171 (206)
                         .+.++++|||+++|+|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+||+++.++    .
T Consensus        85 ---~~~~~iv~E~~~gg~L~~~i~~~---~~l~~~~~~~~~~qi~~al~yLH~---~~ivHrDiKp~Nill~~~~~~~~~  155 (293)
T d1jksa_          85 ---KTDVILILELVAGGELFDFLAEK---ESLTEEEATEFLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPR  155 (293)
T ss_dssp             ---SSEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCSSSSSCC
T ss_pred             ---CCEEEEEEEcCCCccccchhccc---cccchhHHHHHHHHHHHHHHhhhh---cceeecccccceEEEecCCCcccc
Confidence               67899999999999999999765   459999999999999999999999   7999999999999999765    5


Q ss_pred             eeEccCCccccccccccccccccCccccCCCCC
Q 028629          172 AKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       172 ~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +|++|||+|.............+|+.|+|||..
T Consensus       156 vkl~DfG~a~~~~~~~~~~~~~~t~~y~APE~~  188 (293)
T d1jksa_         156 IKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIV  188 (293)
T ss_dssp             EEECCCTTCEECTTSCBCSCCCCCGGGCCHHHH
T ss_pred             eEecchhhhhhcCCCccccccCCCCcccCHHHH
Confidence            999999999988776666667899999999954

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-38  Score=239.05  Aligned_cols=168  Identities=21%  Similarity=0.325  Sum_probs=147.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      .++|+..+.||+|+||.||+|+++++..||+|+++.. ....+++.+|+.++++++||||+++++++.+       .+.+
T Consensus         3 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~-~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~-------~~~~   74 (258)
T d1k2pa_           3 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK-------QRPI   74 (258)
T ss_dssp             CCCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESS-SSCHHHHHHHHHHHHTCCCTTBCCEEEEECC-------SSSE
T ss_pred             hHHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcC-cCCHHHHHHHHHHHHhcCCCceeeEEEEEee-------CCce
Confidence            4789999999999999999999988889999999854 3456789999999999999999999999865       5679


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL  182 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~  182 (206)
                      ++||||+++|++.+++....  ..+++..++.++.|++.||.|||+   .+|+||||||+||++++++.+||+|||+++.
T Consensus        75 ~iv~Ey~~~g~l~~~~~~~~--~~~~~~~~~~i~~qi~~gl~~LH~---~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~  149 (258)
T d1k2pa_          75 FIITEYMANGCLLNYLREMR--HRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRY  149 (258)
T ss_dssp             EEEEECCTTEEHHHHHHSGG--GCCCHHHHHHHHHHHHHHHHHHHH---TTBCCSCCSGGGEEECTTCCEEECCCSSCCB
T ss_pred             EEEEEccCCCcHHHhhhccc--cCCcHHHHHHHHHHHHHHHHHHhh---cCcccccccceeEEEcCCCcEEECcchhhee
Confidence            99999999999999876543  458899999999999999999999   7999999999999999999999999999987


Q ss_pred             ccccc--cccccccCccccCCCC
Q 028629          183 AENAE--KVGHVTPYSGSINPTN  203 (206)
Q Consensus       183 ~~~~~--~~~~~~~~~~y~aPE~  203 (206)
                      .....  ......+|..|+|||.
T Consensus       150 ~~~~~~~~~~~~~~t~~y~aPE~  172 (258)
T d1k2pa_         150 VLDDEYTSSVGSKFPVRWSPPEV  172 (258)
T ss_dssp             CSSSSCCCCCCSCCCGGGCCHHH
T ss_pred             ccCCCceeecccCCCCCcCCcHH
Confidence            65433  2223567888999995

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=3.2e-38  Score=240.68  Aligned_cols=169  Identities=17%  Similarity=0.298  Sum_probs=150.2

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc---------cHHHHHHHHHHHhccC-CCceeeecccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH---------STRNFMHHIELISKLR-HCHLVSALGHCFE   91 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~---------~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~   91 (206)
                      .++|+..+.||+|+||.||+|+.. +++.||+|+++.....         ..+.+.+|+.+++++. ||||+++++++.+
T Consensus         2 ~~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~   81 (277)
T d1phka_           2 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   81 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             cccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence            368999999999999999999975 7999999999765321         1235788999999997 9999999999875


Q ss_pred             ccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCc
Q 028629           92 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLV  171 (206)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~  171 (206)
                             .+.+|++|||+++++|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+||++++++.
T Consensus        82 -------~~~~~ivmE~~~~g~L~~~l~~~---~~l~e~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nill~~~~~  148 (277)
T d1phka_          82 -------NTFFFLVFDLMKKGELFDYLTEK---VTLSEKETRKIMRALLEVICALHK---LNIVHRDLKPENILLDDDMN  148 (277)
T ss_dssp             -------SSEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCC
T ss_pred             -------CcceEEEEEcCCCchHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---cCCcccccccceEEEcCCCC
Confidence                   67899999999999999999765   468999999999999999999999   79999999999999999999


Q ss_pred             eeEccCCccccccccccccccccCccccCCCCC
Q 028629          172 AKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       172 ~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +||+|||+++............||..|+|||..
T Consensus       149 ~kl~DFG~a~~~~~~~~~~~~~gt~~y~~PE~~  181 (277)
T d1phka_         149 IKLTDFGFSCQLDPGEKLREVCGTPSYLAPEII  181 (277)
T ss_dssp             EEECCCTTCEECCTTCCBCCCCSCGGGCCHHHH
T ss_pred             eEEccchheeEccCCCceeeeeccCCCCCHHHh
Confidence            999999999988776666678899999999953

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-38  Score=244.73  Aligned_cols=168  Identities=23%  Similarity=0.410  Sum_probs=131.2

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCc---EEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGT---FIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~---~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ++|+..+.||+|+||.||+|.++ +++   .||+|.+.... ....+.+.+|+++|++++||||+++++++..       
T Consensus        26 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~-------   98 (299)
T d1jpaa_          26 SCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTK-------   98 (299)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-------
T ss_pred             hhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEee-------
Confidence            46677889999999999999975 333   58889886543 3344678999999999999999999999865       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+.++++|||+++|+|.+++....  ..+++..+..++.|++.||.|||+   .+++||||||+|||+++++.+||+|||
T Consensus        99 ~~~~~iv~Ey~~~g~L~~~~~~~~--~~l~~~~~~~i~~qia~gl~yLH~---~~iiHrDlKp~NILl~~~~~~Kl~DFG  173 (299)
T d1jpaa_          99 STPVMIITEFMENGSLDSFLRQND--GQFTVIQLVGMLRGIAAGMKYLAD---MNYVHRDLAARNILVNSNLVCKVSDFG  173 (299)
T ss_dssp             SSSCEEEEECCTTEEHHHHHHTTT--TCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC-
T ss_pred             CCEEEEEEEecCCCcceeeecccc--CCCCHHHHHHHHHHHHHHHHHHhh---CCCccCccccceEEECCCCcEEECCcc
Confidence            567999999999999999887643  458999999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccccc------cccccCccccCCCC
Q 028629          179 LPLLAENAEKV------GHVTPYSGSINPTN  203 (206)
Q Consensus       179 ~a~~~~~~~~~------~~~~~~~~y~aPE~  203 (206)
                      +|+........      ....+|..|+|||.
T Consensus       174 la~~~~~~~~~~~~~~~~~~~~t~~y~aPE~  204 (299)
T d1jpaa_         174 LSRFLEDDTSDPTYTSALGGKIPIRWTAPEA  204 (299)
T ss_dssp             ----------------------CGGGSCHHH
T ss_pred             cceEccCCCCcceeeecccccCCccccCHHH
Confidence            99876543221      11356788999995

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.1e-38  Score=247.38  Aligned_cols=166  Identities=17%  Similarity=0.270  Sum_probs=147.6

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      ++|+.++.||+|+||.||+|+.+ +|+.||+|++....   ....+.+.+|+.+|+.++||||+++++++..       .
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-------~  113 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKD-------N  113 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-------S
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccc-------c
Confidence            57999999999999999999986 79999999997432   3445678899999999999999999998865       6


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...++++|++.+++|.+.+...   ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+
T Consensus       114 ~~~~~v~e~~~~g~l~~~l~~~---~~l~e~~~~~i~~qi~~aL~yLH~---~~iiHRDIKP~NILl~~~g~ikL~DFG~  187 (350)
T d1rdqe_         114 SNLYMVMEYVAGGEMFSHLRRI---GRFSEPHARFYAAQIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGF  187 (350)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred             cccccccccccccchhhhHhhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCEecCcCCHHHcccCCCCCEEeeecee
Confidence            7899999999999999998765   358999999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |+......  ....||+.|||||..
T Consensus       188 a~~~~~~~--~~~~Gt~~Y~APE~~  210 (350)
T d1rdqe_         188 AKRVKGRT--WTLCGTPEALAPEII  210 (350)
T ss_dssp             CEECSSCB--CCCEECGGGCCHHHH
T ss_pred             eeeccccc--ccccCccccCCHHHH
Confidence            99876543  347899999999964

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-39  Score=244.54  Aligned_cols=170  Identities=24%  Similarity=0.405  Sum_probs=140.3

Q ss_pred             HhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ..++|+..+.||+|+||.||+|+++++..||+|+++.. ....+.+.+|+.++++++|+||+++++++.+        +.
T Consensus        15 ~~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~-~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~--------~~   85 (285)
T d1fmka3          15 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE--------EP   85 (285)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTT-SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS--------SS
T ss_pred             CHHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcc-cCCHHHHHHHHHHHHhcccCCEeEEEEEEec--------CC
Confidence            35789999999999999999999987788999999744 3445789999999999999999999998743        45


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++||||+++|+|.+.+..... ..+++..++.++.|++.||.|||+   .+|+||||||+||||++++.+||+|||+++
T Consensus        86 ~~lv~Ey~~~g~l~~~~~~~~~-~~l~~~~~~~i~~~i~~gl~~LH~---~~ivH~DlKp~NIll~~~~~~kl~DfGla~  161 (285)
T d1fmka3          86 IYIVTEYMSKGSLLDFLKGETG-KYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLAR  161 (285)
T ss_dssp             CEEEECCCTTCBHHHHHSHHHH-TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCTTC
T ss_pred             eEEEEEecCCCchhhhhhhccc-ccchHHHHHHHHHHHHHHHHHHhh---hheecccccceEEEECCCCcEEEcccchhh
Confidence            7899999999999988765322 458999999999999999999999   799999999999999999999999999998


Q ss_pred             cccccc--cccccccCccccCCCCC
Q 028629          182 LAENAE--KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~--~~~~~~~~~~y~aPE~~  204 (206)
                      ......  ......++..|+|||..
T Consensus       162 ~~~~~~~~~~~~~~gt~~y~aPE~~  186 (285)
T d1fmka3         162 LIEDNEYTARQGAKFPIKWTAPEAA  186 (285)
T ss_dssp             --------------CCGGGSCHHHH
T ss_pred             hccCCCceeeccccccccccChHHH
Confidence            765433  23335788999999963

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-37  Score=241.29  Aligned_cols=169  Identities=14%  Similarity=0.188  Sum_probs=149.1

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      .++|.+.+.||+|+||.||+|... +++.||+|+++... .....+.+|+++|+.++||||+++++++.+       .+.
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~-~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-------~~~   75 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFES-------MEE   75 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEE-------TTE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCc-ccHHHHHHHHHHHHhCCCCCCCeEEEEEEE-------CCE
Confidence            568999999999999999999986 79999999997543 344568899999999999999999999876       678


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC--CceeEccCCc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN--LVAKISSYNL  179 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~--~~~kl~df~~  179 (206)
                      +|+||||+++++|.+++....  ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.+  ..++|+|||+
T Consensus        76 ~~lvmE~~~gg~L~~~i~~~~--~~l~e~~~~~i~~qi~~al~yLH~---~~iiHrDlKp~NIll~~~~~~~ikl~DFG~  150 (321)
T d1tkia_          76 LVMIFEFISGLDIFERINTSA--FELNEREIVSYVHQVCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQ  150 (321)
T ss_dssp             EEEEECCCCCCBHHHHHTSSS--CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCTT
T ss_pred             EEEEEecCCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHH---cCCCcccccccceeecCCCceEEEEcccch
Confidence            999999999999999997643  358999999999999999999999   899999999999999854  5899999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +.............+++.|+|||..
T Consensus       151 ~~~~~~~~~~~~~~~t~~y~ape~~  175 (321)
T d1tkia_         151 ARQLKPGDNFRLLFTAPEYYAPEVH  175 (321)
T ss_dssp             CEECCTTCEEEEEESCGGGSCHHHH
T ss_pred             hhccccCCcccccccccccccchhc
Confidence            9988776666667899999999853

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-37  Score=237.21  Aligned_cols=169  Identities=22%  Similarity=0.391  Sum_probs=136.5

Q ss_pred             hcCCcccceeccCcceeEEEEEEeC-C----cEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKN-G----TFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~-~----~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      .+.|+..+.||+|+||.||+|.+++ +    ..||+|.+..... ....++.+|+.++++++||||+++++++.+     
T Consensus         6 ~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~-----   80 (283)
T d1mqba_           6 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISK-----   80 (283)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS-----
T ss_pred             HHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEec-----
Confidence            4568889999999999999999763 2    3699999865432 334568899999999999999999999865     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                        .+..++++||+.++++.+.+....  ..+++..+..++.|++.||.|||+   .+|+||||||+||||++++.+||+|
T Consensus        81 --~~~~~~v~e~~~~~~l~~~~~~~~--~~~~~~~~~~i~~~i~~gl~~lH~---~~iiHrDlKp~NILl~~~~~~Kl~D  153 (283)
T d1mqba_          81 --YKPMMIITEYMENGALDKFLREKD--GEFSVLQLVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSD  153 (283)
T ss_dssp             --SSSEEEEEECCTTEEHHHHHHHTT--TCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECC
T ss_pred             --CCceEEEEEecccCcchhhhhccc--ccccHHHHHHHHHHHHHhhhhccc---cccccCccccceEEECCCCeEEEcc
Confidence              567899999999999998877654  468999999999999999999999   7999999999999999999999999


Q ss_pred             CCccccccccc----cccccccCccccCCCC
Q 028629          177 YNLPLLAENAE----KVGHVTPYSGSINPTN  203 (206)
Q Consensus       177 f~~a~~~~~~~----~~~~~~~~~~y~aPE~  203 (206)
                      ||+++......    ......+|..|+|||.
T Consensus       154 FGla~~~~~~~~~~~~~~~~~gt~~Y~APE~  184 (283)
T d1mqba_         154 FGLSRVLEDDPEATYTTSGGKIPIRWTAPEA  184 (283)
T ss_dssp             CCC-----------------CCCGGGSCHHH
T ss_pred             cchhhcccCCCccceEeccCCCCccccCHHH
Confidence            99998765432    2223467889999995

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-37  Score=245.80  Aligned_cols=168  Identities=21%  Similarity=0.287  Sum_probs=143.3

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHH---HHHHHHhccCCCceeeecccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFM---HHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~---~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      .++|++.+.||+|+||.||+|+.. +|+.||+|++....   ......+.   .++.+++.++||||+++++++..    
T Consensus         3 lddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~----   78 (364)
T d1omwa3           3 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHT----   78 (364)
T ss_dssp             STTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEEC----
T ss_pred             HHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEE----
Confidence            468999999999999999999976 79999999986432   11222233   34677888899999999998865    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                         .+.+++||||+++++|.+++...   ..+++..++.++.||+.||.|||+   .+|+||||||+|||+++++.+||+
T Consensus        79 ---~~~~~ivmE~~~gg~L~~~l~~~---~~~~e~~~~~~~~qi~~aL~ylH~---~~iiHrDlKP~NILl~~~g~iKl~  149 (364)
T d1omwa3          79 ---PDKLSFILDLMNGGDLHYHLSQH---GVFSEADMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRIS  149 (364)
T ss_dssp             ---SSEEEEEECCCCSCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECSSSCEEEC
T ss_pred             ---CCEEEEEEEecCCCcHHHHHHhc---ccccHHHHHHHHHHHHHHHHHHHH---CCccceeeccceeEEcCCCcEEEe
Confidence               67899999999999999999765   458899999999999999999999   899999999999999999999999


Q ss_pred             cCCccccccccccccccccCccccCCCCC
Q 028629          176 SYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       176 df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |||+|+..... ......||+.|+|||..
T Consensus       150 DFGla~~~~~~-~~~~~~GT~~y~APE~~  177 (364)
T d1omwa3         150 DLGLACDFSKK-KPHASVGTHGYMAPEVL  177 (364)
T ss_dssp             CCTTCEECSSS-CCCSCCSCGGGCCHHHH
T ss_pred             eeceeeecCCC-cccccccccccchhHHh
Confidence            99999877654 34457899999999964

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-37  Score=237.28  Aligned_cols=167  Identities=19%  Similarity=0.297  Sum_probs=140.3

Q ss_pred             cCCcccce-eccCcceeEEEEEEe---CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           24 NNFDTSAF-MGEGSKGQMYRGRLK---NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        24 ~~~~~~~~-lg~g~~g~v~~~~~~---~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      +++...+. ||+|+||.||+|.++   ++..||||+++... ....+.+.+|+++|++++||||+++++++.+       
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-------   80 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-------   80 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-------
T ss_pred             cCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-------
Confidence            45677774 999999999999864   35579999997554 3345678999999999999999999998743       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                       +.+++||||+++|+|.+++....  ..+++..+..++.|++.||.|||+   .+|+||||||+||++++++.+||+|||
T Consensus        81 -~~~~lvmE~~~~g~L~~~l~~~~--~~l~~~~~~~i~~qi~~gL~ylH~---~~iiHrDlKp~Nill~~~~~~Kl~DFG  154 (285)
T d1u59a_          81 -EALMLVMEMAGGGPLHKFLVGKR--EEIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFG  154 (285)
T ss_dssp             -SSEEEEEECCTTEEHHHHHTTCT--TTSCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEEETTEEEECCCT
T ss_pred             -CeEEEEEEeCCCCcHHHHhhccc--cCCCHHHHHHHHHHHHHHHHHHHh---CCeecCcCchhheeeccCCceeeccch
Confidence             35899999999999999876543  468999999999999999999999   799999999999999999999999999


Q ss_pred             ccccccccc----cccccccCccccCCCC
Q 028629          179 LPLLAENAE----KVGHVTPYSGSINPTN  203 (206)
Q Consensus       179 ~a~~~~~~~----~~~~~~~~~~y~aPE~  203 (206)
                      +|+......    ......+|..|+|||.
T Consensus       155 la~~~~~~~~~~~~~~~~~gt~~y~aPE~  183 (285)
T d1u59a_         155 LSKALGADDSYYTARSAGKWPLKWYAPEC  183 (285)
T ss_dssp             TCEECTTCSCEECCCCSSCCCGGGCCHHH
T ss_pred             hhhcccccccccccccccccCccccChHH
Confidence            998765432    2223467889999995

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-37  Score=236.01  Aligned_cols=160  Identities=19%  Similarity=0.284  Sum_probs=134.1

Q ss_pred             ceeccCcceeEEEEEEe---CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEE
Q 028629           30 AFMGEGSKGQMYRGRLK---NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFL  104 (206)
Q Consensus        30 ~~lg~g~~g~v~~~~~~---~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~l  104 (206)
                      +.||+|+||.||+|.++   +++.||+|+++...  ....+.+.+|++++++++||||+++++++..        +..++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~--------~~~~l   84 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA--------ESWML   84 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES--------SSEEE
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc--------CCEEE
Confidence            47999999999999875   35689999996543  3335679999999999999999999998743        35789


Q ss_pred             EEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          105 IFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       105 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                      ||||+++|+|.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+++...
T Consensus        85 vmE~~~~g~L~~~l~~~---~~l~~~~~~~i~~qi~~gl~ylH~---~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~  158 (277)
T d1xbba_          85 VMEMAELGPLNKYLQQN---RHVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALR  158 (277)
T ss_dssp             EEECCTTEEHHHHHHHC---TTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred             EEEcCCCCcHHHHHhhc---cCCCHHHHHHHHHHHHHHHhhHHh---CCcccCCCcchhhcccccCcccccchhhhhhcc
Confidence            99999999999999876   458999999999999999999999   799999999999999999999999999998765


Q ss_pred             ccc----cccccccCccccCCCC
Q 028629          185 NAE----KVGHVTPYSGSINPTN  203 (206)
Q Consensus       185 ~~~----~~~~~~~~~~y~aPE~  203 (206)
                      ...    ......+|+.|+|||.
T Consensus       159 ~~~~~~~~~~~~~gt~~y~APE~  181 (277)
T d1xbba_         159 ADENYYKAQTHGKWPVKWYAPEC  181 (277)
T ss_dssp             TTCSEEEC----CCCGGGCCHHH
T ss_pred             ccccccccccccCCCceecCchh
Confidence            432    2233568889999995

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-37  Score=241.85  Aligned_cols=173  Identities=23%  Similarity=0.394  Sum_probs=142.1

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-CC-----cEEEEEEeecC-CCccHHHHHHHHHHHhcc-CCCceeeeccccccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-NG-----TFIAIRCLKMK-KSHSTRNFMHHIELISKL-RHCHLVSALGHCFEC   92 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~~-----~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~   92 (206)
                      ...++|+..+.||+|+||.||+|++. .+     ..||+|.+... .......+.+|+.++.++ +||||+++++++.+ 
T Consensus        34 i~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~-  112 (325)
T d1rjba_          34 FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTL-  112 (325)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECS-
T ss_pred             CCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEee-
Confidence            34578999999999999999999975 22     26899988643 234456788999999998 89999999999865 


Q ss_pred             cccCCCCceEEEEEeecCCCCHHHHHhcCCC--------------------CcccCHHHHHHHHHHHHHHHHHHhcCCCC
Q 028629           93 YFDDSSVSRIFLIFEYVPNGTLRSWISEGHA--------------------WQSLTWTQRISAAIGVARGIQFLHTGIVP  152 (206)
Q Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~--------------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~  152 (206)
                            .+.++++|||+++|+|.+++.....                    ...+++..++.++.|++.||.|||+   .
T Consensus       113 ------~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~---~  183 (325)
T d1rjba_         113 ------SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF---K  183 (325)
T ss_dssp             ------SSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHH---T
T ss_pred             ------CCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHh---C
Confidence                  5679999999999999999975421                    1358899999999999999999999   7


Q ss_pred             ceeccCCccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCC
Q 028629          153 GVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       153 ~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                      +|+||||||+||+++.++.+||+|||+|+......   ......+|+.|||||.
T Consensus       184 ~IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~  237 (325)
T d1rjba_         184 SCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPES  237 (325)
T ss_dssp             TEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHH
T ss_pred             CeeeccCchhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHH
Confidence            99999999999999999999999999998765543   2234567899999995

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-36  Score=236.86  Aligned_cols=171  Identities=16%  Similarity=0.248  Sum_probs=144.5

Q ss_pred             hcCCcccc-eeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhcc-CCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSA-FMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~-~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|.+.. .||+|+||.||+|... +++.||+|+++.     ...+.+|++++.++ +||||+++++++.+..   ...
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~-----~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~---~~~   81 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLY---AGR   81 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEE---TTE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC-----cHHHHHHHHHHHHhcCCCCCCeEEEEEeecc---cCC
Confidence            56898765 6999999999999975 799999999863     24567899887655 8999999999875411   124


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC---CCceeEcc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---NLVAKISS  176 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~---~~~~kl~d  176 (206)
                      ..+|++|||++||+|.+++..... ..+++..++.++.|++.||.|||+   .+|+||||||+|||+++   .+.+||+|
T Consensus        82 ~~~~ivmEy~~gg~L~~~i~~~~~-~~l~e~~~~~i~~qi~~al~ylH~---~~iiHRDiKp~NIll~~~~~~~~~Kl~D  157 (335)
T d2ozaa1          82 KCLLIVMECLDGGELFSRIQDRGD-QAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTD  157 (335)
T ss_dssp             EEEEEEEECCCSEEHHHHHHSCSC-CCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCSSTTCCEEECC
T ss_pred             CEEEEEEECCCCCcHHHHHHhcCC-CCcCHHHHHHHHHHHHHHHHHHHH---cCCccccccccccccccccccccccccc
Confidence            578999999999999999976432 569999999999999999999999   79999999999999985   46799999


Q ss_pred             CCccccccccccccccccCccccCCCCCC
Q 028629          177 YNLPLLAENAEKVGHVTPYSGSINPTNSA  205 (206)
Q Consensus       177 f~~a~~~~~~~~~~~~~~~~~y~aPE~~~  205 (206)
                      ||+|+............||+.|+|||...
T Consensus       158 FG~a~~~~~~~~~~~~~gt~~y~aPE~~~  186 (335)
T d2ozaa1         158 FGFAKETTSHNSLTTPCYTPYYVAPEVLG  186 (335)
T ss_dssp             CTTCEECCCCCCCCCCSCCCSSCCCCCCC
T ss_pred             cceeeeccCCCccccccCCcccCCcHHHc
Confidence            99999887766666789999999999753

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=236.42  Aligned_cols=168  Identities=23%  Similarity=0.363  Sum_probs=144.7

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC---CccHHHHHHHHHHHh-ccCCCceeeeccccccccccCCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK---SHSTRNFMHHIELIS-KLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~-~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      ++|..++.||+|+||.||+|... +++.||+|++++..   ....+.+..|..++. .++||||+++++++.+       
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~-------   74 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQT-------   74 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEEC-------
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEcc-------
Confidence            57999999999999999999986 79999999997532   334455666777665 6899999999999876       


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+.+++||||+++|+|.+++...   ..+++..+..++.|++.||.|||+   .+++||||||+|||+++++.+||+|||
T Consensus        75 ~~~~yivmEy~~~g~L~~~i~~~---~~~~e~~~~~~~~qi~~al~ylH~---~~iiHrDikp~NiL~~~~~~~kl~DFG  148 (320)
T d1xjda_          75 KENLFFVMEYLNGGDLMYHIQSC---HKFDLSRATFYAAEIILGLQFLHS---KGIVYRDLKLDNILLDKDGHIKIADFG  148 (320)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCT
T ss_pred             CCceeEEEeecCCCcHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCcccceeecCCCceeccccc
Confidence            67899999999999999999765   458899999999999999999999   799999999999999999999999999


Q ss_pred             cccccccc-ccccccccCccccCCCCC
Q 028629          179 LPLLAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      +++..... .......||+.|+|||..
T Consensus       149 ~a~~~~~~~~~~~~~~gt~~y~aPE~~  175 (320)
T d1xjda_         149 MCKENMLGDAKTNTFCGTPDYIAPEIL  175 (320)
T ss_dssp             TCBCCCCTTCCBCCCCSCGGGCCHHHH
T ss_pred             hhhhcccccccccccCCCCCcCCHHHH
Confidence            99866543 344446899999999964

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-36  Score=234.32  Aligned_cols=168  Identities=20%  Similarity=0.372  Sum_probs=141.7

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .+|+..+.||+|+||.||+|... +|+.||+|+++...  ....+.+.+|++++++++||||+++++++.+       .+
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~-------~~   74 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT-------EN   74 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEE-------TT
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEecccccc-------cc
Confidence            57999999999999999999976 79999999996543  2235678899999999999999999999976       67


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..+++|||+.+ ++.+.+..... ..+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||+|
T Consensus        75 ~~~iv~e~~~~-~~~~~~~~~~~-~~l~e~~~~~~~~qil~~L~yLH~---~~IiHrDiKpeNIl~~~~~~~kl~DFG~a  149 (298)
T d1gz8a_          75 KLYLVFEFLHQ-DLKKFMDASAL-TGIPLPLIKSYLFQLLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLA  149 (298)
T ss_dssp             EEEEEEECCSE-EHHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSTTHH
T ss_pred             ceeEEEeecCC-chhhhhhhhcc-cCCCHHHHHHHHHHHHHHHHHhhc---CCEEccccCchheeecccCcceeccCCcc
Confidence            89999999976 44444433322 569999999999999999999999   89999999999999999999999999999


Q ss_pred             cccccc-ccccccccCccccCCCC
Q 028629          181 LLAENA-EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~y~aPE~  203 (206)
                      +..... .......+|+.|+|||.
T Consensus       150 ~~~~~~~~~~~~~~gt~~y~apE~  173 (298)
T d1gz8a_         150 RAFGVPVRTYTHEVVTLWYRAPEI  173 (298)
T ss_dssp             HHHCCCSBCTTCCBCCCTTCCHHH
T ss_pred             eeccCCcccceeecccceeeehhh
Confidence            877543 44555689999999995

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.6e-36  Score=231.56  Aligned_cols=173  Identities=14%  Similarity=0.264  Sum_probs=140.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC---ccHHHHHHHHHHHhccCCCceeeeccccccccccCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS---HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   98 (206)
                      .++|++.+.||+|+||.||+|... +|+.||+|+++....   ...+.+.+|+++++.++||||+++++++..   .+..
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~---~~~~   82 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEA---ETPA   82 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE---ECSS
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeee---ccCC
Confidence            467999999999999999999975 799999999975532   224568899999999999999999998865   1122


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      ...+|+||||+++++|.+++...   ..+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.++++|||
T Consensus        83 ~~~~~lvmE~~~g~~L~~~~~~~---~~l~~~~~~~i~~qi~~al~~lH~---~~iiHrDiKP~NIll~~~~~~~l~d~~  156 (277)
T d1o6ya_          83 GPLPYIVMEYVDGVTLRDIVHTE---GPMTPKRAIEVIADACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFG  156 (277)
T ss_dssp             SEEEEEEEECCCEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTSCEEECCCT
T ss_pred             CceEEEEEECCCCCEehhhhccc---CCCCHHHHHHHHHHHHHHHHHHHh---CCccCccccCcccccCccccceeehhh
Confidence            34589999999999999988765   458999999999999999999999   799999999999999999999999999


Q ss_pred             cccccccc----ccccccccCccccCCCCC
Q 028629          179 LPLLAENA----EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       179 ~a~~~~~~----~~~~~~~~~~~y~aPE~~  204 (206)
                      .+......    .......||+.|+|||..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~  186 (277)
T d1o6ya_         157 IARAIADSGNSVTQTAAVIGTAQYLSPEQA  186 (277)
T ss_dssp             TCEECC----------------TTCCHHHH
T ss_pred             hhhhhccccccccccccccCcccccCHHHH
Confidence            98755432    234446789999999964

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-37  Score=235.13  Aligned_cols=164  Identities=22%  Similarity=0.317  Sum_probs=136.1

Q ss_pred             ccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc-----cHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           28 TSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH-----STRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        28 ~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      .++.||+|+||.||+|+.. +|+.||+|+++.....     ..+.+.+|+.++++++||||+++++++..       .+.
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~-------~~~   74 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGH-------KSN   74 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECC-------TTC
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeecc-------CCc
Confidence            3578999999999999976 7999999999754322     13468899999999999999999999865       567


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      +++||||+.++++..+....   ..+++..+..++.|++.||.|||+   .+|+||||||+|||+++++.+||+|||+|+
T Consensus        75 ~~ivmE~~~~~~~~~~~~~~---~~l~~~~~~~~~~qil~aL~~lH~---~~iiHrDiKp~NIli~~~~~~KL~DFG~a~  148 (299)
T d1ua2a_          75 ISLVFDFMETDLEVIIKDNS---LVLTPSHIKAYMLMTLQGLEYLHQ---HWILHRDLKPNNLLLDENGVLKLADFGLAK  148 (299)
T ss_dssp             CEEEEECCSEEHHHHHTTCC---SSCCSSHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCCGGGS
T ss_pred             eeehhhhhcchHHhhhhhcc---cCCCHHHHHHHHHHHHHHHHHhhc---cceecccCCcceEEecCCCccccccCcccc
Confidence            99999999887766655443   458889999999999999999999   799999999999999999999999999998


Q ss_pred             ccccc-ccccccccCccccCCCCC
Q 028629          182 LAENA-EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~-~~~~~~~~~~~y~aPE~~  204 (206)
                      ..... .......+|+.|+|||..
T Consensus       149 ~~~~~~~~~~~~~gt~~y~aPE~~  172 (299)
T d1ua2a_         149 SFGSPNRAYTHQVVTRWYRAPELL  172 (299)
T ss_dssp             TTTSCCCCCCCSCCCCTTCCHHHH
T ss_pred             ccCCCcccccceecChhhccHHHH
Confidence            76543 333446789999999953

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=233.59  Aligned_cols=180  Identities=21%  Similarity=0.340  Sum_probs=138.8

Q ss_pred             CHHHHHHHhcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCC-CccHHHHHHHHHHHhcc-CCCceeeec
Q 028629           15 SLEELEEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL-RHCHLVSAL   86 (206)
Q Consensus        15 ~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~~i~~~~   86 (206)
                      ...+|+...++|+..+.||+|+||.||+|...      +++.||+|.++... ....+.+.+|...+.++ +|+||+.++
T Consensus         4 ~~~~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~   83 (299)
T d1ywna1           4 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL   83 (299)
T ss_dssp             CHHHHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             CCccccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEee
Confidence            44566566788999999999999999999964      24689999987543 33345677888888887 688999998


Q ss_pred             cccccccccCCCCceEEEEEeecCCCCHHHHHhcCCC-------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCc
Q 028629           87 GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA-------------WQSLTWTQRISAAIGVARGIQFLHTGIVPG  153 (206)
Q Consensus        87 ~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~  153 (206)
                      +++..      ....++++|||+++|+|.+++.....             ...+++..++.++.|++.||.|||+   .+
T Consensus        84 ~~~~~------~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~---~~  154 (299)
T d1ywna1          84 GACTK------PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RK  154 (299)
T ss_dssp             EEECS------TTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHH---TT
T ss_pred             eeecc------CCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHh---CC
Confidence            87754      24568999999999999999865321             1358899999999999999999999   79


Q ss_pred             eeccCCccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCC
Q 028629          154 VFSNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       154 i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                      |+||||||+|||+++++.+||+|||+|+......   ......||+.|+|||.
T Consensus       155 ivHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~  207 (299)
T d1ywna1         155 CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPET  207 (299)
T ss_dssp             CCCSCCCGGGEEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHH
T ss_pred             CcCCcCCccceeECCCCcEEEccCcchhhccccccccccCceeeCccccchhH
Confidence            9999999999999999999999999998665432   3334678999999995

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.2e-36  Score=232.40  Aligned_cols=178  Identities=24%  Similarity=0.370  Sum_probs=147.6

Q ss_pred             HHHHHHhcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCCCc-cHHHHHHHHHHHhccCCCceeeecccc
Q 028629           17 EELEEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKSH-STRNFMHHIELISKLRHCHLVSALGHC   89 (206)
Q Consensus        17 ~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~   89 (206)
                      .+++.+.++|+..+.||+|+||.||+|+++      ++..||||+++..... ..+++.+|++++++++|+||+++++++
T Consensus         6 ~~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~   85 (301)
T d1lufa_           6 LSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVC   85 (301)
T ss_dssp             HHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             hhccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeee
Confidence            345556788999999999999999999975      3568999999755433 346789999999999999999999998


Q ss_pred             ccccccCCCCceEEEEEeecCCCCHHHHHhcCCC---------------------CcccCHHHHHHHHHHHHHHHHHHhc
Q 028629           90 FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA---------------------WQSLTWTQRISAAIGVARGIQFLHT  148 (206)
Q Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~---------------------~~~~~~~~~~~~~~~i~~~l~~lH~  148 (206)
                      ..       .+..++++|++++++|.+++.....                     ...+++..++.++.|++.||.|||+
T Consensus        86 ~~-------~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~  158 (301)
T d1lufa_          86 AV-------GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE  158 (301)
T ss_dssp             CS-------SSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cc-------CCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhccc
Confidence            65       5678999999999999999864321                     1348899999999999999999999


Q ss_pred             CCCCceeccCCccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCCC
Q 028629          149 GIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       149 ~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                         .+++||||||+|||++.++.+||+|||+|+...+..   ......++..|+|||..
T Consensus       159 ---~~ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~  214 (301)
T d1lufa_         159 ---RKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESI  214 (301)
T ss_dssp             ---TTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHH
T ss_pred             ---CCeEeeEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHH
Confidence               799999999999999999999999999998765443   23345677889999953

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-36  Score=232.93  Aligned_cols=167  Identities=19%  Similarity=0.359  Sum_probs=137.1

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCc----EEEEEEeecC-CCccHHHHHHHHHHHhccCCCceeeeccccccccccCC
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGT----FIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~----~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .+|+..+.||+|+||.||+|.+. +|+    .||+|.+... .....+.+.+|+.++++++||||++++++|.+      
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~------   82 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT------   82 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEES------
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec------
Confidence            46999999999999999999975 454    5888888643 24456789999999999999999999999864      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccC
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY  177 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df  177 (206)
                        +..++++|++.+++|.+.+....  ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+||+||
T Consensus        83 --~~~~~v~e~~~~~~l~~~~~~~~--~~~~~~~~~~i~~qi~~gl~yLH~---~~iiHrDlKp~NIll~~~~~~kl~DF  155 (317)
T d1xkka_          83 --STVQLITQLMPFGCLLDYVREHK--DNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDF  155 (317)
T ss_dssp             --SSEEEEEECCTTCBHHHHHHHTS--SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCC
T ss_pred             --CCeeEEEEeccCCcccccccccc--cCCCHHHHHHHHHHHHHHHHHHHH---cCcccCcchhhcceeCCCCCeEeecc
Confidence              35778899999999999887654  468999999999999999999999   79999999999999999999999999


Q ss_pred             Cccccccccc---cccccccCccccCCCC
Q 028629          178 NLPLLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       178 ~~a~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                      |+|+......   ......+|..|+|||.
T Consensus       156 Gla~~~~~~~~~~~~~~~~gt~~y~APE~  184 (317)
T d1xkka_         156 GLAKLLGAEEKEYHAEGGKVPIKWMALES  184 (317)
T ss_dssp             SHHHHTTTTCC--------CCTTTSCHHH
T ss_pred             ccceecccccccccccccccCccccChHH
Confidence            9998765433   2233467899999995

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-37  Score=231.21  Aligned_cols=168  Identities=20%  Similarity=0.390  Sum_probs=136.3

Q ss_pred             HhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ..++|+..+.||+|+||.||+|.+. |..||+|+++.+  ...+.+.+|++++++++||||+++++++.+      ..+.
T Consensus         5 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~vAvK~i~~~--~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~------~~~~   75 (262)
T d1byga_           5 NMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVE------EKGG   75 (262)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECC------C--C
T ss_pred             CHHHeEEeEEEecCCCeEEEEEEEC-CeEEEEEEECcH--HHHHHHHHHHHHHHhCCCCCEeeEEEEEEe------cCCc
Confidence            4567899999999999999999985 789999999644  345778999999999999999999998864      2345


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      +++||||+++|+|.+++..... ..+++..++.++.|++.||.|||+   .+++||||+|+||+++.++.+|++|||+++
T Consensus        76 ~~lv~ey~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~al~ylH~---~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~  151 (262)
T d1byga_          76 LYIVTEYMAKGSLVDYLRSRGR-SVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTK  151 (262)
T ss_dssp             CEEEECCCTTEEHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSCEEECCCCC--
T ss_pred             EEEEEeccCCCCHHHHHHhcCC-CCCCHHHHHHHHHHHHhhcccccc---CceeccccchHhheecCCCCEeecccccce
Confidence            8999999999999999865322 458999999999999999999999   799999999999999999999999999999


Q ss_pred             cccccccccccccCccccCCCCC
Q 028629          182 LAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ...+..  ....++..|+|||..
T Consensus       152 ~~~~~~--~~~~~~~~y~aPE~l  172 (262)
T d1byga_         152 EASSTQ--DTGKLPVKWTAPEAL  172 (262)
T ss_dssp             ------------CCTTTSCHHHH
T ss_pred             ecCCCC--ccccccccCCChHHH
Confidence            766543  335778899999953

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-36  Score=231.08  Aligned_cols=171  Identities=20%  Similarity=0.336  Sum_probs=137.6

Q ss_pred             hcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHH--HHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFM--HHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~--~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ..+|...+.||+|+||.||+|++ +|..||+|.++...   .+...  .|+..+.+++||||+++++++....   ....
T Consensus         2 ~~~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~---~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~---~~~~   74 (303)
T d1vjya_           2 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDN---GTWT   74 (303)
T ss_dssp             GGGEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC---SSSE
T ss_pred             CcEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccc---hhHHHHHHHHHHHhhCCCCcCcceEEEEEeCC---Ccce
Confidence            35678889999999999999997 58899999986432   23333  3555556789999999999987521   2234


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcC-----CCCceeccCCccccEEecCCCceeEc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTG-----IVPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-----~~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                      .+++||||+++|+|.+++...    .+++..++.++.|++.||.|+|..     ...+|+||||||+||||+.++.+||+
T Consensus        75 ~~~lv~Ey~~~g~L~~~l~~~----~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~  150 (303)
T d1vjya_          75 QLWLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIA  150 (303)
T ss_dssp             EEEEEEECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEEC
T ss_pred             EEEEEEecccCCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEE
Confidence            689999999999999999874    488999999999999999999962     12599999999999999999999999


Q ss_pred             cCCccccccccc-----cccccccCccccCCCCC
Q 028629          176 SYNLPLLAENAE-----KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       176 df~~a~~~~~~~-----~~~~~~~~~~y~aPE~~  204 (206)
                      |||+++......     ......||+.|+|||..
T Consensus       151 DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  184 (303)
T d1vjya_         151 DLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVL  184 (303)
T ss_dssp             CCTTCEEEETTTTEECC----CCSCGGGCCHHHH
T ss_pred             ecCccccccCCCcceeccccceecccCcCChhhc
Confidence            999998765432     23346789999999974

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-36  Score=230.73  Aligned_cols=171  Identities=27%  Similarity=0.422  Sum_probs=142.7

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCc--EEEEEEeecC-CCccHHHHHHHHHHHhcc-CCCceeeeccccccccccCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGT--FIAIRCLKMK-KSHSTRNFMHHIELISKL-RHCHLVSALGHCFECYFDDS   97 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~--~vaiK~~~~~-~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~   97 (206)
                      .++|+..+.||+|+||.||+|.+. ++.  .||+|.++.. .....+.+.+|+++|+++ +||||+++++++.+      
T Consensus         9 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~------   82 (309)
T d1fvra_           9 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH------   82 (309)
T ss_dssp             GGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEE------
T ss_pred             HHHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEec------
Confidence            367999999999999999999976 555  4678887533 234456789999999999 79999999999976      


Q ss_pred             CCceEEEEEeecCCCCHHHHHhcCC-------------CCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccE
Q 028629           98 SVSRIFLIFEYVPNGTLRSWISEGH-------------AWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDI  164 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~L~~~~~~~~-------------~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~ni  164 (206)
                       .+.+++||||+++|+|.+++....             ....+++..++.++.|++.||.|+|+   .+++||||||+||
T Consensus        83 -~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~---~~iiHrDlkp~NI  158 (309)
T d1fvra_          83 -RGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNI  158 (309)
T ss_dssp             -TTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGE
T ss_pred             -CCeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhc---CCccccccccceE
Confidence             678999999999999999986531             22568999999999999999999999   7999999999999


Q ss_pred             EecCCCceeEccCCccccccccccccccccCccccCCCC
Q 028629          165 LLDQNLVAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       165 l~~~~~~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      |++.++.+||+|||+++............+|..|+|||.
T Consensus       159 L~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~  197 (309)
T d1fvra_         159 LVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIES  197 (309)
T ss_dssp             EECGGGCEEECCTTCEESSCEECCC----CCTTTCCHHH
T ss_pred             EEcCCCceEEccccccccccccccccceecCCcccchHH
Confidence            999999999999999988776666666788999999995

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-36  Score=231.05  Aligned_cols=169  Identities=19%  Similarity=0.308  Sum_probs=132.2

Q ss_pred             HhcCCcccceeccCcceeEEEEEEeC----CcEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeeccccccccccC
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLKN----GTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDD   96 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~~----~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   96 (206)
                      ..++|+..+.||+|+||.||+|++..    +..||+|.++.... ...+.+.+|+.++++++||||+++++++.      
T Consensus         5 ~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~------   78 (273)
T d1mp8a_           5 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT------   78 (273)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC------
T ss_pred             CHHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe------
Confidence            35689999999999999999999752    34688998864433 33457899999999999999999999874      


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEcc
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS  176 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~d  176 (206)
                        .+.++++|||+++|++.+++....  ..+++..++.++.|++.||.|||+   .+++||||||+||++++++.+||+|
T Consensus        79 --~~~~~iv~E~~~~g~l~~~~~~~~--~~l~~~~~~~~~~qi~~gl~ylH~---~~iiHrDlKp~NIll~~~~~~Kl~D  151 (273)
T d1mp8a_          79 --ENPVWIIMELCTLGELRSFLQVRK--YSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGD  151 (273)
T ss_dssp             --SSSCEEEEECCTTEEHHHHHHHTT--TTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECC
T ss_pred             --cCeEEEEEEeccCCcHHhhhhccC--CCCCHHHHHHHHHHHHHHhhhhcc---cCeeccccchhheeecCCCcEEEcc
Confidence              346899999999999999876543  458999999999999999999999   7999999999999999999999999


Q ss_pred             CCcccccccc--ccccccccCccccCCCC
Q 028629          177 YNLPLLAENA--EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       177 f~~a~~~~~~--~~~~~~~~~~~y~aPE~  203 (206)
                      ||+|+.....  .......+|+.|+|||.
T Consensus       152 fG~a~~~~~~~~~~~~~~~gt~~y~apE~  180 (273)
T d1mp8a_         152 FGLSRYMEDSTYYKASKGKLPIKWMAPES  180 (273)
T ss_dssp             -------------------CCGGGCCHHH
T ss_pred             chhheeccCCcceeccceecCcccchhhH
Confidence            9999876543  23344577889999995

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=6.3e-36  Score=229.19  Aligned_cols=168  Identities=18%  Similarity=0.268  Sum_probs=141.1

Q ss_pred             cCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCce
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSR  101 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~  101 (206)
                      ++|+..+.||+|+||.||+|+.++|+.||+|+++...  ....+.+.+|+.++++++||||+++++.+..       .+.
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-------~~~   74 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHT-------KKR   74 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEEC-------SSC
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeeccc-------CCc
Confidence            6899999999999999999998889999999997553  2235678899999999999999999998876       667


Q ss_pred             EEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          102 IFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       102 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      .++++|++.++.+..+....   ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+|++|||.+.
T Consensus        75 ~~i~~e~~~~~~~~~~~~~~---~~l~~~~~~~i~~qi~~~L~~LH~---~~IvHrDiKp~NIll~~~~~~kl~DfG~a~  148 (286)
T d1ob3a_          75 LVLVFEHLDQDLKKLLDVCE---GGLESVTAKSFLLQLLNGIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLAR  148 (286)
T ss_dssp             EEEEEECCSEEHHHHHHTST---TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCTTHHH
T ss_pred             eeEEEEeehhhhHHHHHhhc---CCcchhhhHHHHHHHHHHHHHhcc---CcEEecCCCCceeeEcCCCCEEecccccce
Confidence            99999999876666555444   569999999999999999999999   799999999999999999999999999998


Q ss_pred             cccccc-cccccccCccccCCCCC
Q 028629          182 LAENAE-KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       182 ~~~~~~-~~~~~~~~~~y~aPE~~  204 (206)
                      ...... ......+++.|+|||..
T Consensus       149 ~~~~~~~~~~~~~~~~~y~~pE~~  172 (286)
T d1ob3a_         149 AFGIPVRKYTHEIVTLWYRAPDVL  172 (286)
T ss_dssp             HHCC---------CCCTTCCHHHH
T ss_pred             ecccCccccceecccchhhhHHHH
Confidence            775443 33445688899999853

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-36  Score=229.08  Aligned_cols=168  Identities=17%  Similarity=0.211  Sum_probs=141.8

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCc------cHHHHHHHHHHHhccC--CCceeeecccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSH------STRNFMHHIELISKLR--HCHLVSALGHCFECY   93 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~------~~~~~~~e~~~l~~l~--h~~i~~~~~~~~~~~   93 (206)
                      .++|++.+.||+|+||.||+|+.. +|+.||+|++......      ....+.+|+.++++++  ||||+++++++.+  
T Consensus         3 ~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~--   80 (273)
T d1xwsa_           3 ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER--   80 (273)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEEC--
T ss_pred             CCeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEee--
Confidence            468999999999999999999976 7999999999754311      1234567999999996  8999999998865  


Q ss_pred             ccCCCCceEEEEEeecCC-CCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC-CCc
Q 028629           94 FDDSSVSRIFLIFEYVPN-GTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-NLV  171 (206)
Q Consensus        94 ~~~~~~~~~~lv~e~~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~-~~~  171 (206)
                           .+..+++||++.+ +++.+++...   ..+++..++.++.|++.||.|||+   .+|+||||||+|||++. ++.
T Consensus        81 -----~~~~~lv~e~~~~~~~l~~~~~~~---~~l~e~~~~~~~~qi~~al~~lH~---~~iiHrDiKp~NIll~~~~~~  149 (273)
T d1xwsa_          81 -----PDSFVLILERPEPVQDLFDFITER---GALQEELARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGE  149 (273)
T ss_dssp             -----SSEEEEEEECCSSEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTE
T ss_pred             -----CCeEEEEEEeccCcchHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHH---CCCccccCcccceEEecCCCe
Confidence                 6789999999976 5787877665   458999999999999999999999   79999999999999985 479


Q ss_pred             eeEccCCccccccccccccccccCccccCCCCC
Q 028629          172 AKISSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       172 ~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +||+|||+|....... .....||+.|+|||..
T Consensus       150 vkl~DFG~a~~~~~~~-~~~~~GT~~y~aPE~~  181 (273)
T d1xwsa_         150 LKLIDFGSGALLKDTV-YTDFDGTRVYSPPEWI  181 (273)
T ss_dssp             EEECCCTTCEECCSSC-BCCCCSCGGGSCHHHH
T ss_pred             EEECccccceeccccc-ccccccCCCcCCHHHH
Confidence            9999999998765433 3447899999999953

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=2.8e-35  Score=229.60  Aligned_cols=165  Identities=13%  Similarity=0.229  Sum_probs=142.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccC-CCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|++++.||+|+||.||+|+.. +|+.||+|+++..   ..+++.+|+.+|+++. |+||+++++++..     ....
T Consensus        34 ~d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~---~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~-----~~~~  105 (328)
T d3bqca1          34 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKD-----PVSR  105 (328)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS---CHHHHHHHHHHHHHHTTSTTBCCEEEEEEC-----TTTC
T ss_pred             CcCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHH---HHHHHHHHHHHHHhccCCCCCcEEEEEEEe-----cCCC
Confidence            367999999999999999999975 7999999998743   3567889999999995 9999999998753     2345


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCC-CceeEccCCc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQN-LVAKISSYNL  179 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~-~~~kl~df~~  179 (206)
                      .++++|||+++++|....      ..+++..+..++.|++.||.|||+   .+|+||||||+|||++.+ +.++|+|||+
T Consensus       106 ~~~~v~e~~~~~~L~~~~------~~l~e~~i~~i~~qil~aL~~LH~---~gIvHrDiKp~NILi~~~~~~vkl~DFG~  176 (328)
T d3bqca1         106 TPALVFEHVNNTDFKQLY------QTLTDYDIRFYMYEILKALDYCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDWGL  176 (328)
T ss_dssp             SEEEEEECCCSCBGGGTT------TSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTTEEEECCGGG
T ss_pred             ceeEEEeecCCCcHHHHh------cCCCHHHHHHHHHHHHHHHHHHhh---cccccccccccceEEcCCCCeeeeccccc
Confidence            799999999999987653      348899999999999999999999   799999999999999865 5699999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      |.............+|..|+|||..
T Consensus       177 a~~~~~~~~~~~~~~t~~y~aPE~~  201 (328)
T d3bqca1         177 AEFYHPGQEYNVRVASRYFKGPELL  201 (328)
T ss_dssp             CEECCTTCCCCSCCSCGGGCCHHHH
T ss_pred             ceeccCCCcccccccCccccCcccc
Confidence            9988777667778899999999953

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-35  Score=232.21  Aligned_cols=171  Identities=20%  Similarity=0.297  Sum_probs=139.0

Q ss_pred             CCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEE
Q 028629           25 NFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (206)
Q Consensus        25 ~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~  103 (206)
                      +|+..+.||+|+||.||+|+.. +|+.||+|++.......    .+|+++|++++|+||+++++++...... ....+++
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~----~~Ei~il~~l~h~niv~~~~~~~~~~~~-~~~~~~~   95 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFK----NRELQIMRKLDHCNIVRLRYFFYSSGEK-KDEVYLN   95 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSSC----CHHHHHHHHCCCTTBCCEEEEEEEC--C-CSCCEEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccchHH----HHHHHHHHhcCCCCCCcEEEEEEecCcc-CCceEEE
Confidence            6888999999999999999986 79999999997554322    3699999999999999999988653222 2245689


Q ss_pred             EEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC-ceeEccCCcccc
Q 028629          104 LIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL-VAKISSYNLPLL  182 (206)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~-~~kl~df~~a~~  182 (206)
                      ++|||++++.+..+.........+++..+..++.|++.||.|||+   .+|+||||||+|||++.++ .+||+|||++..
T Consensus        96 lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~---~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~  172 (350)
T d1q5ka_          96 LVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ  172 (350)
T ss_dssp             EEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTTCCEEECCCTTCEE
T ss_pred             EEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHh---cCCcccCCCcceEEEecCCCceeEecccchhh
Confidence            999999875444333221111569999999999999999999999   7999999999999999764 899999999998


Q ss_pred             ccccccccccccCccccCCCC
Q 028629          183 AENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       183 ~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      ...........++..|+|||.
T Consensus       173 ~~~~~~~~~~~gt~~y~aPE~  193 (350)
T d1q5ka_         173 LVRGEPNVSYICSRYYRAPEL  193 (350)
T ss_dssp             CCTTSCCCSCCSCTTSCCHHH
T ss_pred             ccCCcccccccccccccChHH
Confidence            776666666789999999985

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=225.73  Aligned_cols=169  Identities=20%  Similarity=0.337  Sum_probs=132.6

Q ss_pred             hcCCcccceeccCcceeEEEEEEe--CC--cEEEEEEeecCC---CccHHHHHHHHHHHhccCCCceeeecccccccccc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK--NG--TFIAIRCLKMKK---SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD   95 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~--~~--~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (206)
                      .++|+..+.||+|+||.||+|+..  ++  ..||+|.++...   ....+++.+|+.++++++||||+++++++.+    
T Consensus         7 ~~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~----   82 (273)
T d1u46a_           7 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT----   82 (273)
T ss_dssp             GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred             hHHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee----
Confidence            467999999999999999999964  23  368999887542   3345678999999999999999999998854    


Q ss_pred             CCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEc
Q 028629           96 DSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKIS  175 (206)
Q Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~  175 (206)
                          +..++++||++++++.+.+....  ..+++..++.++.|++.||.|||+   .+|+||||||+||+++.++.+||+
T Consensus        83 ----~~~~lv~e~~~~~~l~~~~~~~~--~~l~~~~~~~~~~qi~~gl~ylH~---~~iiHrDikp~NIll~~~~~vkl~  153 (273)
T d1u46a_          83 ----PPMKMVTELAPLGSLLDRLRKHQ--GHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIG  153 (273)
T ss_dssp             ----SSCEEEEECCTTCBHHHHHHHHG--GGSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEEC
T ss_pred             ----cchheeeeeecCcchhhhhhccc--CCCCHHHHHHHHHHHHHHHHHhhh---CCEeeeeecHHHhccccccceeec
Confidence                35789999999999998876543  458999999999999999999999   799999999999999999999999


Q ss_pred             cCCccccccccc----cccccccCccccCCCCC
Q 028629          176 SYNLPLLAENAE----KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       176 df~~a~~~~~~~----~~~~~~~~~~y~aPE~~  204 (206)
                      |||+++......    ......++..|+|||..
T Consensus       154 DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~  186 (273)
T d1u46a_         154 DFGLMRALPQNDDHYVMQEHRKVPFAWCAPESL  186 (273)
T ss_dssp             CCTTCEECCC-CCEEEC-----CCGGGCCHHHH
T ss_pred             cchhhhhcccCCCcceecCccccCcccCCHHHH
Confidence            999999765432    23334677889999953

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-35  Score=228.80  Aligned_cols=180  Identities=20%  Similarity=0.325  Sum_probs=148.4

Q ss_pred             eCHHHHHHHhcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCCC-ccHHHHHHHHHHHhccCCCceeeec
Q 028629           14 FSLEELEEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKKS-HSTRNFMHHIELISKLRHCHLVSAL   86 (206)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~   86 (206)
                      +-.++|+...++|...+.||+|+||.||+|.++      ++..||||+++.... .....+.+|+.++++++|+||++++
T Consensus        10 ~~~~~~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~   89 (308)
T d1p4oa_          10 YVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLL   89 (308)
T ss_dssp             CCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEE
T ss_pred             cCccceeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeee
Confidence            333455566789999999999999999999864      256899999975432 3334688999999999999999999


Q ss_pred             cccccccccCCCCceEEEEEeecCCCCHHHHHhcC-------CCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCC
Q 028629           87 GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEG-------HAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNL  159 (206)
Q Consensus        87 ~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-------~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl  159 (206)
                      +++..       .+..+++|||+++|+|.+++...       .....+++..+..++.|++.||.|||+   .+|+||||
T Consensus        90 ~~~~~-------~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~---~~ivHrDl  159 (308)
T d1p4oa_          90 GVVSQ-------GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDL  159 (308)
T ss_dssp             EEECS-------SSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCC
T ss_pred             eEEec-------CCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhh---CCeeeceE
Confidence            99865       56789999999999999987532       112347899999999999999999999   79999999


Q ss_pred             ccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCC
Q 028629          160 KITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       160 ~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                      ||+|||+++++++||+|||+|+......   ......+++.|+|||.
T Consensus       160 k~~NiLld~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~  206 (308)
T d1p4oa_         160 AARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPES  206 (308)
T ss_dssp             SGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHH
T ss_pred             cCCceeecCCceEEEeecccceeccCCcceeeccceecccccCCHHH
Confidence            9999999999999999999998765543   2333467889999985

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-35  Score=225.61  Aligned_cols=176  Identities=19%  Similarity=0.292  Sum_probs=144.0

Q ss_pred             HhcCCcccceeccCcceeEEEEEEe-C-CcEEEEEEeecCC--CccHHHHHHHHHHHhcc---CCCceeeeccccccccc
Q 028629           22 ATNNFDTSAFMGEGSKGQMYRGRLK-N-GTFIAIRCLKMKK--SHSTRNFMHHIELISKL---RHCHLVSALGHCFECYF   94 (206)
Q Consensus        22 ~~~~~~~~~~lg~g~~g~v~~~~~~-~-~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l---~h~~i~~~~~~~~~~~~   94 (206)
                      ..++|++.+.||+|+||.||+|+.. + ++.||+|++....  ......+.+|+.+++.+   +||||+++++++.....
T Consensus         5 ~~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~   84 (305)
T d1blxa_           5 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   84 (305)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             CcCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeeccccc
Confidence            4578999999999999999999974 4 6679999986542  22233566777777666   79999999998864222


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeE
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI  174 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl  174 (206)
                        .....+++++|+++++.+........  ..+++..++.++.|++.||.|||+   .+|+||||||+|||+++++.+||
T Consensus        85 --~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~qi~~aL~yLH~---~~ivHrDiKp~NILi~~~~~~kl  157 (305)
T d1blxa_          85 --DRETKLTLVFEHVDQDLTTYLDKVPE--PGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKL  157 (305)
T ss_dssp             --SSEEEEEEEEECCSCBHHHHHHHSCT--TCSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEE
T ss_pred             --ccCceEEEEEEeccCCchhhhhhccC--CCCCHHHHHHHHHHHHHHHHHHHh---CCEEecCCCccEEEEcCCCCeee
Confidence              12457899999998876654444332  568899999999999999999999   79999999999999999999999


Q ss_pred             ccCCccccccccccccccccCccccCCCCC
Q 028629          175 SSYNLPLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       175 ~df~~a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      +|||++.............||+.|+|||..
T Consensus       158 ~dfg~~~~~~~~~~~~~~~gT~~Y~APE~~  187 (305)
T d1blxa_         158 ADFGLARIYSFQMALTSVVVTLWYRAPEVL  187 (305)
T ss_dssp             CSCCSCCCCCGGGGGCCCCCCCTTCCHHHH
T ss_pred             cchhhhhhhcccccCCCcccChhhcCcchh
Confidence            999999988777777778999999999954

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=223.54  Aligned_cols=164  Identities=20%  Similarity=0.364  Sum_probs=137.5

Q ss_pred             cceeccCcceeEEEEEEeC----CcEEEEEEeecC-CCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEE
Q 028629           29 SAFMGEGSKGQMYRGRLKN----GTFIAIRCLKMK-KSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIF  103 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~~----~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~  103 (206)
                      .+.||+|+||.||+|.+.+    ...||+|.++.. .....+++.+|+++|++++||||+++++++..      ..+..+
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~------~~~~~~  105 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR------SEGSPL  105 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEE------TTTEEE
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEe------cCCceE
Confidence            4679999999999999752    236899998743 33445789999999999999999999998864      245789


Q ss_pred             EEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccc
Q 028629          104 LIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLA  183 (206)
Q Consensus       104 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~  183 (206)
                      +||||+++++|.+++....  ...++..+..++.|++.||.|+|+   .+|+||||||+|||+++++.+||+|||+++..
T Consensus       106 lv~E~~~~g~l~~~~~~~~--~~~~~~~~~~i~~qia~gL~~lH~---~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~  180 (311)
T d1r0pa_         106 VVLPYMKHGDLRNFIRNET--HNPTVKDLIGFGLQVAKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDM  180 (311)
T ss_dssp             EEEECCTTCBHHHHHHCTT--CCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECSSGGGCCT
T ss_pred             EEEEEeecCchhhhhcccc--ccchHHHHHHHHHHHHHhhhhhcc---cCcccCCccHHhEeECCCCCEEEecccchhhc
Confidence            9999999999999887654  457788899999999999999999   79999999999999999999999999999876


Q ss_pred             cccc-----cccccccCccccCCCC
Q 028629          184 ENAE-----KVGHVTPYSGSINPTN  203 (206)
Q Consensus       184 ~~~~-----~~~~~~~~~~y~aPE~  203 (206)
                      ....     ......+|..|+|||.
T Consensus       181 ~~~~~~~~~~~~~~~gt~~y~aPE~  205 (311)
T d1r0pa_         181 YDKEFDSVHNKTGAKLPVKWMALES  205 (311)
T ss_dssp             TTTTCCCTTCTTCSSCCGGGSCHHH
T ss_pred             cccccccceecccccccccccChHH
Confidence            5432     2222467889999995

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=227.27  Aligned_cols=172  Identities=15%  Similarity=0.260  Sum_probs=139.2

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC-CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK-SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ..+|+.++.||+|+||.||+|... +|+.||||++.... ....+.+.+|+++|++++|||++++++++....+..  ..
T Consensus         7 ~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~--~~   84 (345)
T d1pmea_           7 GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQ--MK   84 (345)
T ss_dssp             CTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTT--CC
T ss_pred             CCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccc--cc
Confidence            467999999999999999999975 89999999997543 333567889999999999999999999886532211  22


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..+++ +++.+++|.+++...    .+++..+..++.|++.||.|||+   .+|+||||||+|||+++++.+||+|||+|
T Consensus        85 ~~~l~-~~~~~g~L~~~l~~~----~l~~~~i~~i~~qil~al~yLH~---~~iiHRDIKp~NILl~~~~~~kl~DfG~a  156 (345)
T d1pmea_          85 DVYLV-THLMGADLYKLLKTQ----HLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLA  156 (345)
T ss_dssp             CEEEE-EECCCEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             eEEEE-EeecCCchhhhhhcC----CCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCcceEEECCCCCEEEcccCce
Confidence            34554 566688999999764    48999999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccc----cccccccCccccCCCCC
Q 028629          181 LLAENAE----KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       181 ~~~~~~~----~~~~~~~~~~y~aPE~~  204 (206)
                      .......    ......+++.|+|||..
T Consensus       157 ~~~~~~~~~~~~~~~~~gt~~y~aPE~l  184 (345)
T d1pmea_         157 RVADPDHDHTGFLTEYVATRWYRAPEIM  184 (345)
T ss_dssp             EECCGGGCBCCTTCCCCSCGGGCCGGGT
T ss_pred             eeccCCCccceeeccccccceechHHHh
Confidence            8654432    23445788999999964

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-35  Score=226.88  Aligned_cols=188  Identities=20%  Similarity=0.303  Sum_probs=152.5

Q ss_pred             CCCCccceeCHH-HHHHHhcCCcccceeccCcceeEEEEEEe------CCcEEEEEEeecCC-CccHHHHHHHHHHHhcc
Q 028629            6 LGLPAYRTFSLE-ELEEATNNFDTSAFMGEGSKGQMYRGRLK------NGTFIAIRCLKMKK-SHSTRNFMHHIELISKL   77 (206)
Q Consensus         6 ~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~g~~g~v~~~~~~------~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l   77 (206)
                      |....+..+... .|+...++|+..+.||+|+||.||+|.+.      ++..||+|+++... ......+.+|+.+++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l   83 (311)
T d1t46a_           4 YVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYL   83 (311)
T ss_dssp             TCCCCTTTSCCCGGGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ceeeCcccCCCcccccCCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhc
Confidence            334444444432 45556689999999999999999999863      35689999997544 33445788999999999


Q ss_pred             -CCCceeeeccccccccccCCCCceEEEEEeecCCCCHHHHHhcCC---------------CCcccCHHHHHHHHHHHHH
Q 028629           78 -RHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGH---------------AWQSLTWTQRISAAIGVAR  141 (206)
Q Consensus        78 -~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~---------------~~~~~~~~~~~~~~~~i~~  141 (206)
                       +||||+++++++.+       ....+++|||+++++|.+++....               ....+++..+..++.||+.
T Consensus        84 ~~HpnIv~~~g~~~~-------~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~  156 (311)
T d1t46a_          84 GNHMNIVNLLGACTI-------GGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAK  156 (311)
T ss_dssp             CCCTTBCCEEEEECS-------SSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEEEEee-------CCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHH
Confidence             69999999999965       567899999999999999986532               1135889999999999999


Q ss_pred             HHHHHhcCCCCceeccCCccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCC
Q 028629          142 GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTN  203 (206)
Q Consensus       142 ~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~  203 (206)
                      ||.|||+   .+++||||||+||+++.++.++++|||+++......   ......+|+.|+|||.
T Consensus       157 gl~~LH~---~~ivHrDLKp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~  218 (311)
T d1t46a_         157 GMAFLAS---KNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPES  218 (311)
T ss_dssp             HHHHHHH---TTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHH
T ss_pred             HHHHHHh---CCeeecccccccccccccCcccccccchheeccCCCcceEeeecccChHHcCHHH
Confidence            9999999   899999999999999999999999999998765432   2334577889999995

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=226.84  Aligned_cols=170  Identities=14%  Similarity=0.215  Sum_probs=138.4

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|+.++.||+|+||.||+|... +|+.||+|+++...  ....+.+.+|+++|++++||||+++++++...... ...
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~-~~~   95 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETL-DDF   95 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSST-TTC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccc-ccc
Confidence            678999999999999999999976 79999999997543  23345788999999999999999999988652211 123


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ..++++|||+ +.+|..+...    ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.+|++|||+
T Consensus        96 ~~~~lv~e~~-~~~l~~~~~~----~~l~~~~~~~~~~qi~~aL~~LH~---~~IiHrDiKp~NIL~~~~~~~kl~Dfg~  167 (346)
T d1cm8a_          96 TDFYLVMPFM-GTDLGKLMKH----EKLGEDRIQFLVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELKILDFGL  167 (346)
T ss_dssp             CCCEEEEECC-SEEHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             ceEEEEEecc-cccHHHHHHh----ccccHHHHHHHHHHHHHHHHHHHh---CCCcccccCcchhhcccccccccccccc
Confidence            4679999999 5578887765    358999999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      |+..+...  ....+|+.|+|||.
T Consensus       168 a~~~~~~~--~~~~~t~~y~aPE~  189 (346)
T d1cm8a_         168 ARQADSEM--TGYVVTRWYRAPEV  189 (346)
T ss_dssp             CEECCSSC--CSSCSCGGGCCTHH
T ss_pred             eeccCCcc--ccccccccccCHHH
Confidence            98776543  34689999999995

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-34  Score=220.16  Aligned_cols=174  Identities=21%  Similarity=0.370  Sum_probs=141.4

Q ss_pred             HHhcCCcccceeccCcceeEEEEEEe-C-------CcEEEEEEeecCCC-ccHHHHHHHHHHHhcc-CCCceeeeccccc
Q 028629           21 EATNNFDTSAFMGEGSKGQMYRGRLK-N-------GTFIAIRCLKMKKS-HSTRNFMHHIELISKL-RHCHLVSALGHCF   90 (206)
Q Consensus        21 ~~~~~~~~~~~lg~g~~g~v~~~~~~-~-------~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~   90 (206)
                      ...++|..++.||+|+||.||+|+.. .       +..||+|+++.+.. .....+.+|...+.++ +||||++++++|.
T Consensus        10 i~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~   89 (299)
T d1fgka_          10 LPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT   89 (299)
T ss_dssp             CCGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             ccHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccc
Confidence            34578999999999999999999964 2       24799999976543 3456788899999888 7999999999997


Q ss_pred             cccccCCCCceEEEEEeecCCCCHHHHHhcCCC-------------CcccCHHHHHHHHHHHHHHHHHHhcCCCCceecc
Q 028629           91 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA-------------WQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSN  157 (206)
Q Consensus        91 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-------------~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~  157 (206)
                      +       .+..+++|||+++|+|.+++.....             ...+++..++.++.|++.||.|||+   .+|+||
T Consensus        90 ~-------~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~---~~ivHr  159 (299)
T d1fgka_          90 Q-------DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KKCIHR  159 (299)
T ss_dssp             S-------SSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCS
T ss_pred             c-------CCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhh---CCEEee
Confidence            6       5679999999999999999965421             2458999999999999999999999   799999


Q ss_pred             CCccccEEecCCCceeEccCCccccccccc---cccccccCccccCCCCC
Q 028629          158 NLKITDILLDQNLVAKISSYNLPLLAENAE---KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       158 dl~p~nil~~~~~~~kl~df~~a~~~~~~~---~~~~~~~~~~y~aPE~~  204 (206)
                      ||||+|||++.++.+||+|||+++...+..   ......+++.|+|||..
T Consensus       160 DiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l  209 (299)
T d1fgka_         160 DLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEAL  209 (299)
T ss_dssp             CCSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHH
T ss_pred             eecccceeecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHh
Confidence            999999999999999999999998776543   23346788899999953

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-34  Score=221.78  Aligned_cols=175  Identities=15%  Similarity=0.280  Sum_probs=138.3

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeecccccccccc-CCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFD-DSS   98 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~-~~~   98 (206)
                      .++|+..+.||+|+||.||+|+.. +|+.||||++....  ....+++.+|+.+|++++|+|++++++.+...... ...
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence            588999999999999999999976 89999999986543  34456788999999999999999999987542211 112


Q ss_pred             CceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCC
Q 028629           99 VSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN  178 (206)
Q Consensus        99 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~  178 (206)
                      .+..+++||++.++.+.......   ..+++..++.++.|++.||.|||+   .+|+||||||+|||+++++.+||+|||
T Consensus        89 ~~~~~iv~e~~~~~~~~~~~~~~---~~~~~~~~~~i~~qil~~l~~lH~---~~ivHrDlKp~NILl~~~~~~kl~dfg  162 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLLSNVL---VKFTLSEIKRVMQMLLNGLYYIHR---NKILHRDMKAANVLITRDGVLKLADFG  162 (318)
T ss_dssp             --CEEEEEECCCEEHHHHHTCTT---CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCT
T ss_pred             CceEEEEEeccCCCccchhhhcc---cccccHHHHHHHHHHHHHHHHhcc---CCEEecCcCchheeecCCCcEEeeecc
Confidence            45689999999876665444333   458889999999999999999999   799999999999999999999999999


Q ss_pred             cccccccc-----ccccccccCccccCCCC
Q 028629          179 LPLLAENA-----EKVGHVTPYSGSINPTN  203 (206)
Q Consensus       179 ~a~~~~~~-----~~~~~~~~~~~y~aPE~  203 (206)
                      +++.....     .......+|++|+|||.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~  192 (318)
T d3blha1         163 LARAFSLAKNSQPNRYTNRVVTLWYRPPEL  192 (318)
T ss_dssp             TCEECCC-----CCCCCSCCSCGGGCCHHH
T ss_pred             eeeecccccccccccccceecCHHHhhHHH
Confidence            99765422     22333578999999995

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-33  Score=216.21  Aligned_cols=167  Identities=16%  Similarity=0.260  Sum_probs=144.0

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      ++|+..+.||+|+||.||+|+.. +++.||+|+++...  ......+.+|+.+++.++|+||+++++++..       ..
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~-------~~   74 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHS-------DK   74 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEC-------SS
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeecccccc-------cc
Confidence            68999999999999999999976 79999999997554  3345688999999999999999999998876       66


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCcc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP  180 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a  180 (206)
                      ..+++++++.++++..++...   ..+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.+||+|||.+
T Consensus        75 ~~~iv~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~q~~~aL~~lH~---~~IvHrDiKP~NIli~~~~~~kl~DFG~a  148 (292)
T d1unla_          75 KLTLVFEFCDQDLKKYFDSCN---GDLDPEIVKSFLFQLLKGLGFCHS---RNVLHRDLKPQNLLINRNGELKLANFGLA  148 (292)
T ss_dssp             EEEEEEECCSEEHHHHHHHTT---TCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTC
T ss_pred             ceeEEeeeccccccccccccc---cccchhHHHHHHHHHHHHHHHhhc---CCEeeecccCcccccccCCceeeeecchh
Confidence            889999999998888877655   458899999999999999999999   79999999999999999999999999999


Q ss_pred             ccccccc-cccccccCccccCCCC
Q 028629          181 LLAENAE-KVGHVTPYSGSINPTN  203 (206)
Q Consensus       181 ~~~~~~~-~~~~~~~~~~y~aPE~  203 (206)
                      ....... ......++..|+|||.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~pe~  172 (292)
T d1unla_         149 RAFGIPVRCYSAEVVTLWYRPPDV  172 (292)
T ss_dssp             EECCSCCSCCCSCCSCGGGCCHHH
T ss_pred             hcccCCCccceeeccccchhhhhH
Confidence            8776543 3333456677888874

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-33  Score=222.02  Aligned_cols=172  Identities=16%  Similarity=0.191  Sum_probs=131.9

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCC--CccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKK--SHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|+..+.||+|+||.||+|+.. +|..||+|++....  ....+.+.+|+.++++++||||+++++++...... ...
T Consensus        16 ~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~-~~~   94 (355)
T d2b1pa1          16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTL-EEF   94 (355)
T ss_dssp             ETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCST-TTC
T ss_pred             cCCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEeccccc-ccC
Confidence            578999999999999999999976 79999999997553  23345688999999999999999999988652221 124


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ..+|++|||+.++ +.+.+.     ..+++..++.++.|++.||.|||+   .+|+||||||+|||++.++.++++|||+
T Consensus        95 ~~~~iv~Ey~~~~-l~~~~~-----~~~~~~~i~~~~~qil~gl~~LH~---~giiHrDlKP~Nil~~~~~~~kl~df~~  165 (355)
T d2b1pa1          95 QDVYLVMELMDAN-LCQVIQ-----MELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGL  165 (355)
T ss_dssp             CEEEEEEECCSEE-HHHHHT-----SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCCCC
T ss_pred             ceeEEEEeccchH-HHHhhh-----cCCCHHHHHHHHHHHHHHHHHhhh---cccccccCCccccccccccceeeechhh
Confidence            6899999999764 444443     247899999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~~  204 (206)
                      ++............+|+.|+|||..
T Consensus       166 ~~~~~~~~~~~~~~~t~~y~aPE~l  190 (355)
T d2b1pa1         166 ARTAGTSFMMTPYVVTRYYRAPEVI  190 (355)
T ss_dssp             ---------------CCTTCCHHHH
T ss_pred             hhccccccccccccccccccChhhh
Confidence            9988877777778899999999964

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=6.3e-33  Score=213.00  Aligned_cols=167  Identities=11%  Similarity=0.152  Sum_probs=138.8

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCC-CceeeeccccccccccCCCCc
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRH-CHLVSALGHCFECYFDDSSVS  100 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h-~~i~~~~~~~~~~~~~~~~~~  100 (206)
                      .++|++.+.||+|+||.||+|+.. +|+.||+|++....  ....+.+|++.++.+.| +|++.++.++..       ..
T Consensus         4 g~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~-------~~   74 (293)
T d1csna_           4 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQE-------GL   74 (293)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEE-------TT
T ss_pred             CCceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcccc--CcHHHHHHHHHHHHhcCCCCCCEEEEEeec-------CC
Confidence            468999999999999999999976 79999999886443  23446778888888865 899888887755       66


Q ss_pred             eEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC-----CCceeEc
Q 028629          101 RIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ-----NLVAKIS  175 (206)
Q Consensus       101 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~-----~~~~kl~  175 (206)
                      ..+++||++ +++|.+++....  ..++......++.|++.||.|||+   .+|+||||||+||+++.     ++.++|+
T Consensus        75 ~~~~vme~~-~~~l~~~~~~~~--~~~~~~~~~~i~~q~~~~l~~lH~---~giiHrDiKp~Nili~~~~~~~~~~vkl~  148 (293)
T d1csna_          75 HNVLVIDLL-GPSLEDLLDLCG--RKFSVKTVAMAAKQMLARVQSIHE---KSLVYRDIKPDNFLIGRPNSKNANMIYVV  148 (293)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECCSSSTTTTCEEEC
T ss_pred             ccEEEEEec-CCCHHHHHHhhc--cchhhHHHHHHHHHHHHHHHHHHH---CCceeccCCccceeecCcccccCCceEEc
Confidence            789999999 679999887654  358899999999999999999999   89999999999999974     5789999


Q ss_pred             cCCccccccccc--------cccccccCccccCCCCC
Q 028629          176 SYNLPLLAENAE--------KVGHVTPYSGSINPTNS  204 (206)
Q Consensus       176 df~~a~~~~~~~--------~~~~~~~~~~y~aPE~~  204 (206)
                      |||+|+......        ......||+.|||||..
T Consensus       149 DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~  185 (293)
T d1csna_         149 DFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTH  185 (293)
T ss_dssp             CCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHH
T ss_pred             ccceeEEcccCccccceeecccCceEEchhhcCHHHh
Confidence            999998764321        23346799999999953

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-33  Score=219.20  Aligned_cols=170  Identities=13%  Similarity=0.188  Sum_probs=138.0

Q ss_pred             hcCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCC--ccHHHHHHHHHHHhccCCCceeeeccccccccccCCCC
Q 028629           23 TNNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKS--HSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSV   99 (206)
Q Consensus        23 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   99 (206)
                      .++|+..+.||+|+||.||+|+.. +|+.||+|++.....  ...+.+.+|+++|++++|+|++++++++......+  .
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~--~   94 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLE--E   94 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTT--T
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccc--c
Confidence            578999999999999999999975 799999999975432  33457889999999999999999999875422111  2


Q ss_pred             ceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeEccCCc
Q 028629          100 SRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL  179 (206)
Q Consensus       100 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl~df~~  179 (206)
                      ...+++++++.+++|.+++..    ..+++..+..++.|++.||.|||+   .+|+||||||+|||++.++.++++|||+
T Consensus        95 ~~~~~i~~~~~gg~L~~~~~~----~~l~e~~~~~i~~qil~aL~~LH~---~giiHrDiKp~NILi~~~~~~kl~dfg~  167 (348)
T d2gfsa1          95 FNDVYLVTHLMGADLNNIVKC----QKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGL  167 (348)
T ss_dssp             CCCCEEEEECCSEEHHHHHTT----CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCC--
T ss_pred             CceEEEEEeecCCchhhhccc----ccccHHHHHHHHHHHHHHHHHHHh---CCCcccccCCccccccccccccccccch
Confidence            234556677889999998865    358999999999999999999999   7999999999999999999999999999


Q ss_pred             cccccccccccccccCccccCCCC
Q 028629          180 PLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       180 a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                      +.......  ....++..|+|||.
T Consensus       168 a~~~~~~~--~~~~g~~~y~apE~  189 (348)
T d2gfsa1         168 ARHTDDEM--TGYVATRWYRAPEI  189 (348)
T ss_dssp             --CCTGGG--SSSCHHHHTSCHHH
T ss_pred             hcccCccc--ccccccccccCchh
Confidence            98765433  33678889999995

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-33  Score=217.29  Aligned_cols=168  Identities=20%  Similarity=0.307  Sum_probs=143.4

Q ss_pred             cCCcccceeccCcceeEEEEEEe----CCcEEEEEEeecCC----CccHHHHHHHHHHHhccCC-Cceeeeccccccccc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK----NGTFIAIRCLKMKK----SHSTRNFMHHIELISKLRH-CHLVSALGHCFECYF   94 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~----~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~h-~~i~~~~~~~~~~~~   94 (206)
                      ++|+..+.||+|+||.||+|...    +|+.||+|.++...    ....+.+.+|++++++++| +||+++++++.+   
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~---  100 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT---  100 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEE---
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeecc---
Confidence            56999999999999999999852    58899999986432    2334567889999999976 899999998866   


Q ss_pred             cCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCCceeE
Q 028629           95 DDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKI  174 (206)
Q Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~~~kl  174 (206)
                          ....++++||+.+++|.+++...   ..+++.....++.|++.|+.|+|+   .+++||||||+||+++.++.++|
T Consensus       101 ----~~~~~~v~e~~~~~~L~~~i~~~---~~~~e~~~~~~~~Qi~~al~~lH~---~~ivHrDiKp~Nill~~~~~vkL  170 (322)
T d1vzoa_         101 ----ETKLHLILDYINGGELFTHLSQR---ERFTEHEVQIYVGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVL  170 (322)
T ss_dssp             ----TTEEEEEECCCCSCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEE
T ss_pred             ----CCceeeeeecccccHHHHHHHhc---ccccHHHHHHHHHHHHHHHHHhhc---CCEEeccCCccceeecCCCCEEE
Confidence                56899999999999999998776   347788999999999999999999   79999999999999999999999


Q ss_pred             ccCCcccccccc--ccccccccCccccCCCCC
Q 028629          175 SSYNLPLLAENA--EKVGHVTPYSGSINPTNS  204 (206)
Q Consensus       175 ~df~~a~~~~~~--~~~~~~~~~~~y~aPE~~  204 (206)
                      +|||+++.....  .......+++.|+|||..
T Consensus       171 ~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~  202 (322)
T d1vzoa_         171 TDFGLSKEFVADETERAYDFCGTIEYMAPDIV  202 (322)
T ss_dssp             SCSSEEEECCGGGGGGGCGGGSCCTTCCHHHH
T ss_pred             eeccchhhhcccccccccccccccccchhHHh
Confidence            999999865433  344556788999999853

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=2.4e-32  Score=210.39  Aligned_cols=166  Identities=14%  Similarity=0.194  Sum_probs=133.7

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceE
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRI  102 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~  102 (206)
                      ++|++.+.||+|+||.||+|... +|+.||+|++.....  .+++..|+++++.++|+|++..+..+..      ..+..
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~i~~~l~~~~~i~~~~~~~~------~~~~~   78 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGA------EGDYN   78 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT--SCCHHHHHHHHHHSTTSTTCCCEEEEEE------ETTEE
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc--CHHHHHHHHHHHHccCCCcccEEEEEEe------cCCEE
Confidence            57999999999999999999975 789999999875432  2457789999999988776655554432      25678


Q ss_pred             EEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecC---CCceeEccCCc
Q 028629          103 FLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQ---NLVAKISSYNL  179 (206)
Q Consensus       103 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~---~~~~kl~df~~  179 (206)
                      +++||++. +++.+.+....  ..+++..+..++.|++.||.|||+   .+|+||||||+|||++.   +..++++|||+
T Consensus        79 ~ivme~~~-~~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~  152 (299)
T d1ckia_          79 VMVMELLG-PSLEDLFNFCS--RKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGL  152 (299)
T ss_dssp             EEEEECCC-CBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECCGGGTTCEEECCCSS
T ss_pred             EEEEEEcC-Cchhhhhhhcc--CCCcHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHhhccccccCCCceeeeeccCc
Confidence            99999995 46766665433  458999999999999999999999   79999999999999863   45799999999


Q ss_pred             cccccccc--------cccccccCccccCCCC
Q 028629          180 PLLAENAE--------KVGHVTPYSGSINPTN  203 (206)
Q Consensus       180 a~~~~~~~--------~~~~~~~~~~y~aPE~  203 (206)
                      |+......        ......||+.|+|||.
T Consensus       153 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~  184 (299)
T d1ckia_         153 AKKYRDARTHQHIPYRENKNLTGTARYASINT  184 (299)
T ss_dssp             CEECBCTTTCCBCCCCBCCSCCCCSSSCCHHH
T ss_pred             ceeccccccccceeccccCCcCCCccccCHHH
Confidence            98765432        2334679999999995

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=5.6e-28  Score=190.20  Aligned_cols=169  Identities=14%  Similarity=0.205  Sum_probs=128.7

Q ss_pred             cCCcccceeccCcceeEEEEEEe-CCcEEEEEEeecCCCccHHHHHHHHHHHhccCC-----------Cceeeecccccc
Q 028629           24 NNFDTSAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMKKSHSTRNFMHHIELISKLRH-----------CHLVSALGHCFE   91 (206)
Q Consensus        24 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h-----------~~i~~~~~~~~~   91 (206)
                      ++|++++.||+|+||.||+|+.. +|+.||+|+++... ...+.+.+|+.+++.+.|           +||+++++++..
T Consensus        13 ~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~-~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~   91 (362)
T d1q8ya_          13 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   91 (362)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             CcEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccc-cchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeee
Confidence            45999999999999999999975 79999999997442 334567788988888754           677777776643


Q ss_pred             ccccCCCCceEEEEEeecCCC-CHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEecCCC
Q 028629           92 CYFDDSSVSRIFLIFEYVPNG-TLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLDQNL  170 (206)
Q Consensus        92 ~~~~~~~~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~~~~  170 (206)
                           ......+.+++++... +.......... ..+++..+..++.|++.||.|||+.  .+|+||||||+|||++.++
T Consensus        92 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~i~~qil~al~~lh~~--~~IvHrDlKp~NIll~~~~  163 (362)
T d1q8ya_          92 -----KGPNGVHVVMVFEVLGENLLALIKKYEH-RGIPLIYVKQISKQLLLGLDYMHRR--CGIIHTDIKPENVLMEIVD  163 (362)
T ss_dssp             -----EETTEEEEEEEECCCCEEHHHHHHHTTT-SCCCHHHHHHHHHHHHHHHHHHHHT--TCEECSCCSGGGEEEEEEE
T ss_pred             -----ccccceeeeeeecccccccccccccccc-cCCcHHHHHHHHHHHHHHHHHHhhh--cCcccccCChhHeeeeccC
Confidence                 1234556666666444 33333332222 5688999999999999999999974  6899999999999998553


Q ss_pred             ------ceeEccCCccccccccccccccccCccccCCCC
Q 028629          171 ------VAKISSYNLPLLAENAEKVGHVTPYSGSINPTN  203 (206)
Q Consensus       171 ------~~kl~df~~a~~~~~~~~~~~~~~~~~y~aPE~  203 (206)
                            .++++|||.+......  .....++..|+|||.
T Consensus       164 ~~~~~~~~kl~dfg~s~~~~~~--~~~~~gt~~y~aPE~  200 (362)
T d1q8ya_         164 SPENLIQIKIADLGNACWYDEH--YTNSIQTREYRSPEV  200 (362)
T ss_dssp             TTTTEEEEEECCCTTCEETTBC--CCSCCSCGGGCCHHH
T ss_pred             cccccceeeEeecccccccccc--cccccccccccChhh
Confidence                  4899999999866543  344689999999995

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.91  E-value=1.2e-24  Score=156.65  Aligned_cols=135  Identities=10%  Similarity=0.115  Sum_probs=103.2

Q ss_pred             CcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCc------------------cHHHHHHHHHHHhccCCCceeeecc
Q 028629           26 FDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSH------------------STRNFMHHIELISKLRHCHLVSALG   87 (206)
Q Consensus        26 ~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~------------------~~~~~~~e~~~l~~l~h~~i~~~~~   87 (206)
                      +.+++.||+|+||.||+|...+|+.||+|++......                  .......|...+.++.|.+++..++
T Consensus         2 ~~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~   81 (191)
T d1zara2           2 DAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYA   81 (191)
T ss_dssp             SEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEE
T ss_pred             chhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEE
Confidence            3567899999999999999888999999987532110                  0123455788888899998887765


Q ss_pred             ccccccccCCCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCCceeccCCccccEEec
Q 028629           88 HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGIVPGVFSNNLKITDILLD  167 (206)
Q Consensus        88 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~i~h~dl~p~nil~~  167 (206)
                      +.           ..+++||++++..+.+          ++......++.|++.++.|||+   .+|+||||||+|||++
T Consensus        82 ~~-----------~~~lvme~~~~~~~~~----------l~~~~~~~i~~ql~~~l~~lH~---~giiHrDiKP~NILv~  137 (191)
T d1zara2          82 WE-----------GNAVLMELIDAKELYR----------VRVENPDEVLDMILEEVAKFYH---RGIVHGDLSQYNVLVS  137 (191)
T ss_dssp             EE-----------TTEEEEECCCCEEGGG----------CCCSCHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEE
T ss_pred             ec-----------CCEEEEEeeccccccc----------hhhHHHHHHHHHHHHHHHHHhh---CCEEEccCChhheeee
Confidence            32           2368999998755432          2233345688999999999999   7999999999999999


Q ss_pred             CCCceeEccCCccccccc
Q 028629          168 QNLVAKISSYNLPLLAEN  185 (206)
Q Consensus       168 ~~~~~kl~df~~a~~~~~  185 (206)
                      ++ .++|+|||.|.....
T Consensus       138 ~~-~~~liDFG~a~~~~~  154 (191)
T d1zara2         138 EE-GIWIIDFPQSVEVGE  154 (191)
T ss_dssp             TT-EEEECCCTTCEETTS
T ss_pred             CC-CEEEEECCCcccCCC
Confidence            65 588999999976653

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.79  E-value=3.2e-08  Score=72.74  Aligned_cols=151  Identities=10%  Similarity=-0.012  Sum_probs=95.7

Q ss_pred             HHHHHhcCCcccceeccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccC-CCceeeeccccccccccC
Q 028629           18 ELEEATNNFDTSAFMGEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLR-HCHLVSALGHCFECYFDD   96 (206)
Q Consensus        18 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~~i~~~~~~~~~~~~~~   96 (206)
                      ++......|+..+..+.++.+.||+... ++..+++|............+..|...++.+. +-.+.+++.+...     
T Consensus         8 ~l~~~~~~~~~~~~~~G~s~~~v~rv~~-~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~-----   81 (263)
T d1j7la_           8 ELKKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERH-----   81 (263)
T ss_dssp             HHHHHHTTSEEEECSCCCSSSEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEE-----
T ss_pred             HHHHhhhceEEEEcCCCCCCCcEEEEEe-CCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEec-----
Confidence            5556667888777655455568998764 46677888876554444555677888877764 3334555554433     


Q ss_pred             CCCceEEEEEeecCCCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcCC--------------------------
Q 028629           97 SSVSRIFLIFEYVPNGTLRSWISEGHAWQSLTWTQRISAAIGVARGIQFLHTGI--------------------------  150 (206)
Q Consensus        97 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--------------------------  150 (206)
                        .+..+++|++++|.++.+.....     ...   ..++.+++..+..||+..                          
T Consensus        82 --~~~~~lv~~~l~G~~~~~~~~~~-----~~~---~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (263)
T d1j7la_          82 --DGWSNLLMSEADGVLCSEEYEDE-----QSP---EKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLA  151 (263)
T ss_dssp             --TTEEEEEEECCSSEEHHHHTTTC-----SCH---HHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCS
T ss_pred             --CCceEEEEEeccccccccccccc-----ccH---HHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhh
Confidence              46789999999987776543221     111   112233333333333210                          


Q ss_pred             ------------------------------CCceeccCCccccEEecCCCceeEccCCcccccc
Q 028629          151 ------------------------------VPGVFSNNLKITDILLDQNLVAKISSYNLPLLAE  184 (206)
Q Consensus       151 ------------------------------~~~i~h~dl~p~nil~~~~~~~kl~df~~a~~~~  184 (206)
                                                    ...++|+|+.|.||++++++.+-|.||+.+....
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~~g~  215 (263)
T d1j7la_         152 DVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRAD  215 (263)
T ss_dssp             CCCGGGGSTTCSCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEEEE
T ss_pred             hhhhhcccccccchHHHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhcccCC
Confidence                                          1237999999999999987767799999987543

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=98.29  E-value=1e-06  Score=64.07  Aligned_cols=73  Identities=15%  Similarity=0.164  Sum_probs=46.5

Q ss_pred             eccCcc-eeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCC--ceeeeccccccccccCCCCceEEEEEee
Q 028629           32 MGEGSK-GQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHC--HLVSALGHCFECYFDDSSVSRIFLIFEY  108 (206)
Q Consensus        32 lg~g~~-g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~--~i~~~~~~~~~~~~~~~~~~~~~lv~e~  108 (206)
                      +..|.. ..||+....++..+++|......   ...+..|...++.+...  .+.+++.+..+       .+..+++|++
T Consensus        18 ~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~---~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~-------~~~~~~v~~~   87 (255)
T d1nd4a_          18 QTIGCSDAAVFRLSAQGRPVLFVKTDLSGA---LNELQDEAARLSWLATTGVPCAAVLDVVTE-------AGRDWLLLGE   87 (255)
T ss_dssp             CSCTTSSCEEEEEECTTSCCEEEEEECSCT---TSCHHHHHHHHHHHHTTTCCBCCEEEEEEC-------SSCEEEEEEC
T ss_pred             cCCcccCCeEEEEEeCCCCEEEEEeCCccC---HhHHHHHHHHHHHHHhcCCCCCceeeeccc-------ccceEEEEEe
Confidence            344443 57898887667778888765332   33456678777777433  34555554433       4578999999


Q ss_pred             cCCCCH
Q 028629          109 VPNGTL  114 (206)
Q Consensus       109 ~~~~~L  114 (206)
                      ++|.++
T Consensus        88 i~G~~~   93 (255)
T d1nd4a_          88 VPGQDL   93 (255)
T ss_dssp             CSSEET
T ss_pred             eecccc
Confidence            987554

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=98.25  E-value=4.8e-06  Score=64.66  Aligned_cols=76  Identities=7%  Similarity=-0.020  Sum_probs=47.0

Q ss_pred             cceeccCcceeEEEEEEe-CCcEEEEEEeecC-------CCccHHHHHHHHHHHhccC-C--CceeeeccccccccccCC
Q 028629           29 SAFMGEGSKGQMYRGRLK-NGTFIAIRCLKMK-------KSHSTRNFMHHIELISKLR-H--CHLVSALGHCFECYFDDS   97 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~-~~~~vaiK~~~~~-------~~~~~~~~~~e~~~l~~l~-h--~~i~~~~~~~~~~~~~~~   97 (206)
                      .+.+|.|....||+.... +++.+++|.-...       ......+...|.+.|+.+. +  ..+++++.+.        
T Consensus        31 ~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~d--------  102 (392)
T d2pula1          31 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSD--------  102 (392)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEE--------
T ss_pred             EEEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEEc--------
Confidence            557899999999999865 5778999975321       1223345566888777663 2  3344554432        


Q ss_pred             CCceEEEEEeecCCCC
Q 028629           98 SVSRIFLIFEYVPNGT  113 (206)
Q Consensus        98 ~~~~~~lv~e~~~~~~  113 (206)
                       ....+++||++++..
T Consensus       103 -~~~~~lvmE~L~~~~  117 (392)
T d2pula1         103 -TEMAVTVMEDLSHLK  117 (392)
T ss_dssp             -TTTTEEEECCCTTSE
T ss_pred             -CCCCEEEEeccCCcc
Confidence             234578999997643

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=9e-05  Score=55.71  Aligned_cols=74  Identities=9%  Similarity=0.101  Sum_probs=45.8

Q ss_pred             ceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCceeeeccccccccccCCCCceEEEEEeecCC
Q 028629           37 KGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLVSALGHCFECYFDDSSVSRIFLIFEYVPN  111 (206)
Q Consensus        37 ~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~lv~e~~~~  111 (206)
                      -..||++...+|..+++|+.... ....+++..|+..+..+...++.-..-............+..+.++++++|
T Consensus        35 EN~vy~v~~~dg~~~VlK~~rp~-~~s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G  108 (325)
T d1zyla1          35 ENRVYQFQDEDRRRFVVKFYRPE-RWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGG  108 (325)
T ss_dssp             SSEEEEECCTTCCCEEEEEECTT-TSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCC
T ss_pred             cceeEEEEcCCCCEEEEEEeCCC-CCCHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecCC
Confidence            35899999888999999988643 334566788998888885443321111111101000124567888998876

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.63  E-value=0.00028  Score=54.41  Aligned_cols=72  Identities=15%  Similarity=0.210  Sum_probs=46.6

Q ss_pred             cceeccCcceeEEEEEEeC--------CcEEEEEEeecCCCccHHHHHHHHHHHhccCCCce-eeeccccccccccCCCC
Q 028629           29 SAFMGEGSKGQMYRGRLKN--------GTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHL-VSALGHCFECYFDDSSV   99 (206)
Q Consensus        29 ~~~lg~g~~g~v~~~~~~~--------~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i-~~~~~~~~~~~~~~~~~   99 (206)
                      ++.|+.|-...+|++...+        ...|++++.- .. .......+|..+++.+.-.++ .++++++..        
T Consensus        47 v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g-~~-~~~idr~~E~~i~~~ls~~gl~Pkll~~~~~--------  116 (395)
T d1nw1a_          47 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYF-NP-ETESHLVAESVIFTLLSERHLGPKLYGIFSG--------  116 (395)
T ss_dssp             EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEEC-SC-CCHHHHHHHHHHHHHHHHTTSSSCEEEEETT--------
T ss_pred             EEEcCCccccceEEEEeCCCCccccCCCCcEEEEecC-Cc-chhhHHHHHHHHHHHHHhCCCCCeEEEEcCC--------
Confidence            4567778888999998643        3457777664 32 233456679999888854444 455555421        


Q ss_pred             ceEEEEEeecCCCC
Q 028629          100 SRIFLIFEYVPNGT  113 (206)
Q Consensus       100 ~~~~lv~e~~~~~~  113 (206)
                         ..++||++|.+
T Consensus       117 ---g~I~efi~g~~  127 (395)
T d1nw1a_         117 ---GRLEEYIPSRP  127 (395)
T ss_dssp             ---EEEECCCCEEE
T ss_pred             ---ceEEEEecccc
Confidence               46889887643

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.62  E-value=0.00058  Score=50.70  Aligned_cols=165  Identities=9%  Similarity=0.063  Sum_probs=82.8

Q ss_pred             eeCHHHHHHHhcCCccccee-----ccCcceeEEEEEEeCCcEEEEEEeecCCCccHHHHHHHHHHHhccCCCcee--ee
Q 028629           13 TFSLEELEEATNNFDTSAFM-----GEGSKGQMYRGRLKNGTFIAIRCLKMKKSHSTRNFMHHIELISKLRHCHLV--SA   85 (206)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~l-----g~g~~g~v~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~--~~   85 (206)
                      .++-.++.....+|..++..     ..|--.+.|+....+| .+++|+.....  ..+.+..|+.++..+...++.  ..
T Consensus         2 ~ls~~el~~~l~~Y~lg~~~~~~~i~~G~~N~ny~v~t~~g-~yVLri~~~~~--~~~~l~~~~~~l~~L~~~g~pvp~p   78 (316)
T d2ppqa1           2 DITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRV--EKNDLPFFLGLMQHLAAKGLSCPLP   78 (316)
T ss_dssp             CCCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCB
T ss_pred             CCCHHHHHHHHHhCCCCCceEeecCCCCcccCeEEEEECCC-cEEEEEcCCCC--CHHHHHHHHHHHHhhhhcccccccc
Confidence            35667888888899776543     3455567898876544 58889875332  234455567777777433331  11


Q ss_pred             ccccccccccCCCCceEEEEEeecCCCCHH-----HHH---------h----cC--CCCc------------------cc
Q 028629           86 LGHCFECYFDDSSVSRIFLIFEYVPNGTLR-----SWI---------S----EG--HAWQ------------------SL  127 (206)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~-----~~~---------~----~~--~~~~------------------~~  127 (206)
                      .... +...-.........++.++.+....     ...         .    ..  ....                  ..
T Consensus        79 i~~~-~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (316)
T d2ppqa1          79 LPRK-DGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADE  157 (316)
T ss_dssp             CCBT-TCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGG
T ss_pred             ceec-CCCcceeeecccceeeeecccccccccchhHHHHHHHHHHhhhhhhhhcccccccccchhhcchhhhHHHHhhhh
Confidence            1100 0000000123455566666542211     100         0    00  0000                  00


Q ss_pred             CHHHHHHHHHHHHHHHHHHhc-CCCCceeccCCccccEEecCCCceeEccCCccc
Q 028629          128 TWTQRISAAIGVARGIQFLHT-GIVPGVFSNNLKITDILLDQNLVAKISSYNLPL  181 (206)
Q Consensus       128 ~~~~~~~~~~~i~~~l~~lH~-~~~~~i~h~dl~p~nil~~~~~~~kl~df~~a~  181 (206)
                      ........+......+..... ....+++|+|+.+.|++++.+...-|.||+.+.
T Consensus       158 ~~~~~~~~l~~~~~~~~~~~~~~L~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         158 VEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             TSTTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cchhHHHHHHHHHHhhhccCccccccccccCCcchhhhhcccccceeEecccccc
Confidence            000111112222222222221 233589999999999999988777899999985