BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028630
         (206 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HB0|A Chain A, Crystal Structure Of Cfae, The Adhesive Subunit Of CfaI
           Fimbria Of Enterotoxigenic Escherichia Coli
 pdb|2HB0|B Chain B, Crystal Structure Of Cfae, The Adhesive Subunit Of CfaI
           Fimbria Of Enterotoxigenic Escherichia Coli
          Length = 369

 Score = 29.6 bits (65), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 23/42 (54%)

Query: 39  KRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRI 80
           KR+   T+G++ ++  +   DK  I  W P+F  ++  D+ +
Sbjct: 158 KRRYDTTYGTYTINITVNLTDKGNIQIWLPQFKSNARVDLNL 199


>pdb|3F83|A Chain A, Structure Of Fusion Complex Of The Minor Pilin Cfae And
           Major Pilin Cfab Of CfaI PILI FROM ETEC E. COLI
          Length = 519

 Score = 29.6 bits (65), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 23/42 (54%)

Query: 39  KRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRI 80
           KR+   T+G++ ++  +   DK  I  W P+F  ++  D+ +
Sbjct: 158 KRRYDTTYGTYTINITVNLTDKGNIQIWLPQFKSNARVDLNL 199


>pdb|3VAC|A Chain A, Crystal Structure Of The Cfa/i Enterotoxigenic E. Coli
           Adhesin Cfae Mutant G168d
 pdb|3VAC|B Chain B, Crystal Structure Of The Cfa/i Enterotoxigenic E. Coli
           Adhesin Cfae Mutant G168d
          Length = 356

 Score = 29.6 bits (65), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 23/42 (54%)

Query: 39  KRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRI 80
           KR+   T+G++ ++  +   DK  I  W P+F  ++  D+ +
Sbjct: 158 KRRYDTTYGTYTINITVNLTDKGNIQIWLPQFKSNARVDLNL 199


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,574,825
Number of Sequences: 62578
Number of extensions: 212887
Number of successful extensions: 565
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 4
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)