Query 028630
Match_columns 206
No_of_seqs 116 out of 130
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 14:31:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11833 DUF3353: Protein of u 100.0 8.6E-49 1.9E-53 332.7 16.0 166 7-205 12-194 (194)
2 PF06570 DUF1129: Protein of u 90.4 7.8 0.00017 32.9 12.2 35 7-45 13-47 (206)
3 COG4858 Uncharacterized membra 89.9 13 0.00029 32.7 14.6 92 7-107 27-131 (226)
4 PHA03102 Small T antigen; Revi 64.2 17 0.00037 30.3 5.3 40 2-41 24-65 (153)
5 PRK11427 multidrug efflux syst 59.3 47 0.001 34.0 8.3 67 71-163 25-91 (683)
6 KOG0721 Molecular chaperone (D 54.1 16 0.00036 32.5 3.7 29 2-32 116-152 (230)
7 COG1055 ArsB Na+/H+ antiporter 48.9 1.1E+02 0.0025 29.3 8.7 75 108-203 190-264 (424)
8 COG4591 LolE ABC-type transpor 46.0 55 0.0012 31.2 6.1 57 146-205 325-391 (408)
9 PF04341 DUF485: Protein of un 43.1 71 0.0015 23.9 5.2 18 187-204 55-72 (91)
10 PF01102 Glycophorin_A: Glycop 42.7 42 0.00091 27.1 4.1 23 109-131 83-105 (122)
11 PF05251 UPF0197: Uncharacteri 41.9 81 0.0017 23.7 5.2 21 185-205 49-69 (77)
12 COG2851 CitM H+/citrate sympor 41.5 1.4E+02 0.0031 28.9 8.0 38 75-114 230-267 (433)
13 smart00271 DnaJ DnaJ molecular 41.4 48 0.001 21.7 3.6 30 2-33 18-56 (60)
14 PF10507 DUF2453: Protein of u 40.8 24 0.00052 28.2 2.4 45 110-159 58-102 (111)
15 PF11947 DUF3464: Protein of u 37.8 91 0.002 26.1 5.5 40 140-182 59-98 (153)
16 PF07787 DUF1625: Protein of u 37.2 1E+02 0.0022 26.9 6.0 43 137-180 179-221 (248)
17 PRK11677 hypothetical protein; 36.4 35 0.00075 27.9 2.7 18 146-163 4-21 (134)
18 cd06257 DnaJ DnaJ domain or J- 36.2 48 0.001 21.2 3.0 29 2-32 17-53 (55)
19 PF04226 Transgly_assoc: Trans 35.9 62 0.0013 21.7 3.5 17 188-204 29-46 (48)
20 PF11085 YqhR: Conserved membr 34.9 1.6E+02 0.0036 25.2 6.6 16 185-200 130-145 (173)
21 PF04050 Upf2: Up-frameshift s 33.8 46 0.00099 27.6 3.1 26 17-42 57-82 (170)
22 PRK06231 F0F1 ATP synthase sub 33.6 90 0.002 26.7 5.0 56 144-203 6-66 (205)
23 PRK14300 chaperone protein Dna 31.2 90 0.002 29.0 4.9 43 2-48 20-69 (372)
24 PF00226 DnaJ: DnaJ domain; I 30.8 1.6E+02 0.0034 19.6 5.0 35 2-36 17-58 (64)
25 KOG4452 Predicted membrane pro 30.6 93 0.002 23.2 3.9 52 146-205 20-71 (79)
26 PF06295 DUF1043: Protein of u 29.3 39 0.00085 26.9 1.9 16 148-163 2-17 (128)
27 PRK14276 chaperone protein Dna 28.7 86 0.0019 29.2 4.4 43 2-48 21-70 (380)
28 COG3105 Uncharacterized protei 28.1 59 0.0013 26.9 2.7 18 146-163 9-26 (138)
29 COG3162 Predicted membrane pro 28.0 1.8E+02 0.0039 23.0 5.3 50 146-203 28-79 (102)
30 TIGR02212 lolCE lipoprotein re 27.0 1.7E+02 0.0037 26.3 5.8 18 146-163 322-339 (411)
31 TIGR02349 DnaJ_bact chaperone 26.8 88 0.0019 28.6 4.0 43 2-48 17-66 (354)
32 COG4818 Predicted membrane pro 26.8 2E+02 0.0043 22.8 5.3 12 193-204 68-79 (105)
33 PF01864 DUF46: Putative integ 26.4 80 0.0017 26.9 3.4 12 137-148 34-45 (175)
34 PF09682 Holin_LLH: Phage holi 26.2 94 0.002 23.9 3.5 28 3-30 69-102 (108)
35 PF05814 DUF843: Baculovirus p 26.0 82 0.0018 24.0 3.0 18 17-34 61-78 (83)
36 PF12645 HTH_16: Helix-turn-he 25.4 1.8E+02 0.0039 20.6 4.6 43 11-56 4-50 (65)
37 PRK10814 outer membrane-specif 25.4 1.9E+02 0.0041 26.2 5.9 18 146-163 320-337 (399)
38 PF13807 GNVR: G-rich domain o 25.4 84 0.0018 22.6 3.0 18 146-163 60-77 (82)
39 COG3601 Predicted membrane pro 24.9 3.6E+02 0.0079 23.4 7.1 47 97-169 75-125 (186)
40 PRK11146 outer membrane-specif 24.6 1.6E+02 0.0035 26.9 5.3 18 146-163 323-340 (412)
41 TIGR00845 caca sodium/calcium 23.8 2.4E+02 0.0051 30.1 6.8 27 66-94 61-87 (928)
42 PF09514 SSXRD: SSXRD motif; 23.8 41 0.00089 21.6 0.9 18 32-49 9-26 (34)
43 COG1823 Predicted Na+/dicarbox 23.4 1.2E+02 0.0025 29.6 4.2 34 108-164 17-50 (458)
44 PF10190 Tmemb_170: Putative t 22.5 3.9E+02 0.0085 21.1 7.0 28 174-206 73-100 (105)
45 PRK10263 DNA translocase FtsK; 22.4 3.9E+02 0.0084 29.9 8.2 11 143-153 113-123 (1355)
46 PF12732 YtxH: YtxH-like prote 21.5 84 0.0018 22.3 2.3 15 149-163 2-16 (74)
47 PRK13279 arnT 4-amino-4-deoxy- 21.4 5E+02 0.011 25.8 8.3 16 137-152 342-357 (552)
48 TIGR02901 QoxD cytochrome aa3 21.1 2.9E+02 0.0063 21.2 5.3 12 110-121 53-64 (94)
49 COG4956 Integral membrane prot 21.0 2E+02 0.0044 27.2 5.1 18 146-163 82-99 (356)
50 TIGR01185 devC DevC protein. T 20.5 1.9E+02 0.0041 26.8 4.9 52 146-204 314-365 (380)
51 PF07709 SRR: Seven Residue Re 20.5 70 0.0015 16.2 1.2 11 22-32 3-13 (14)
52 PF11086 DUF2878: Protein of u 20.3 4.9E+02 0.011 21.3 7.2 34 147-182 48-81 (152)
53 PRK14291 chaperone protein Dna 20.1 1.6E+02 0.0035 27.4 4.5 32 2-35 20-58 (382)
No 1
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=100.00 E-value=8.6e-49 Score=332.70 Aligned_cols=166 Identities=33% Similarity=0.488 Sum_probs=148.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccchhcccc-----------CCCCCCCCC----cC
Q 028630 7 AKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADK-----------QPIFPWGPR----FA 71 (206)
Q Consensus 7 ar~~l~~~~~~d~~~~~~IEaAYD~IlM~~L~~R~~g~~~Gki~V~~~ir~ad~-----------~~~~PW~~r----~~ 71 (206)
|||++++||+||++++|+||+|||+|||+||++||+ ||||||++|||+|+ .+.+||++| ++
T Consensus 12 Arn~ll~~y~gd~~~~~~IEaAYD~ILM~rL~~Rq~----Gki~v~~~ir~ad~~~~~~~~~~~~~~~p~wl~~~~~~~~ 87 (194)
T PF11833_consen 12 ARNRLLAQYAGDEKSREAIEAAYDAILMERLRQRQK----GKIKVPERIRYADREEPKPPNPKPSNPSPPWLQRLLPSFD 87 (194)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHc----CCCCccHHHHHhhhccccccCCCCCCccchHHHhccccee
Confidence 699999999999999999999999999999999999 89999999999998 233469988 59
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHH--HHHHHHHHhhhccCCCCCCCCCCCCCCccchhhhhhhhHHHH
Q 028630 72 KSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLA--FAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRC 149 (206)
Q Consensus 72 ~Ps~~di~~~~ai~~~l~~w~~~~~~~~~~~lq~la--~a~iYfl~~K~k~~~p~~~~~~~~~~~~~gRa~~~~~rll~~ 149 (206)
+|+.+||.+++++|++|++|+++.+.+++|+||+++ ++||||+|+|++++ |||+ ++++
T Consensus 88 ~P~~~~l~~~~~~f~~L~~~~~~~~~~~~~~l~Lal~~~~~iyfl~~K~~~~---------------~rA~-----~~~~ 147 (194)
T PF11833_consen 88 TPSSQDLLIRAAAFGALGLWSLLFPAASGPGLQLALGLGACIYFLNRKERKL---------------GRAF-----LWTL 147 (194)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHhcchH---------------HHHH-----HHHH
Confidence 999999999999999999999996577999999444 88999999999999 9999 9999
Q ss_pred HHHHHHHHHHHhhhhcchhhhhhccCCcCCccccchhHHHHHHHHHHHHHHHhhcc
Q 028630 150 LALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYY 205 (206)
Q Consensus 150 ~~Lv~G~i~gs~l~~t~~l~~i~~~g~~~p~~~~~~~E~~vs~~~~v~L~l~ssfl 205 (206)
++|++||++|++|+ +|++. ..+|..+ +.|+++|++++++||++|+||
T Consensus 148 ~~L~~G~~lGs~l~--~~l~~-----~~~p~~~--s~~~~~sl~~~i~lwl~s~fL 194 (194)
T PF11833_consen 148 GGLVVGLILGSLLA--SWLPV-----DIVPGPW--SPEQLVSLFTYILLWLVSLFL 194 (194)
T ss_pred HHHHHHHHHHHHHH--hhccc-----ccCCCCC--CHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999998 78742 1122111 679999999999999999997
No 2
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=90.45 E-value=7.8 Score=32.90 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 028630 7 AKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVT 45 (206)
Q Consensus 7 ar~~l~~~~~~d~~~~~~IEaAYD~IlM~~L~~R~~g~~ 45 (206)
.++++.+.-..|++..+-+|...|.+ +..-++|+|
T Consensus 13 l~~~L~~~~~~e~~~e~~L~eil~~L----leaQk~G~t 47 (206)
T PF06570_consen 13 LRKYLRSSGVSEEEIEELLEEILPHL----LEAQKKGKT 47 (206)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHH----HHHHhCCCc
Confidence 45566544555555555555555555 455677665
No 3
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=89.86 E-value=13 Score=32.68 Aligned_cols=92 Identities=26% Similarity=0.326 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhhcCCC----CCC-------cccccchhccc-cCCCCCCCCCcCCCC
Q 028630 7 AKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVT----FGS-------FKVSKEIKFAD-KQPIFPWGPRFAKSS 74 (206)
Q Consensus 7 ar~~l~~~~~~d~~~~~~IEaAYD~IlM~~L~~R~~g~~----~Gk-------i~V~~~ir~ad-~~~~~PW~~r~~~Ps 74 (206)
+-|+++...+.||+...-+|.+..+||-+| +||.| ||. ++++...|.+. .+.-.||+=-+|.+
T Consensus 27 vtkqli~~gksdeeik~Il~e~ipqIleeQ----kkGitARkL~gtPTe~v~sf~~k~~~kaa~~ekNtdp~lm~lDss- 101 (226)
T COG4858 27 VTKQLIGDGKSDEEIKIILEEMIPQILEEQ----KKGITARKLLGTPTEWVVSFDPKVAVKAAPVEKNTDPWLMWLDSS- 101 (226)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhh----hccchHHHHcCCchHHHhhcCcchhcccCCcccCCCceEEEeccc-
Confidence 346788888999999999999999998765 44433 231 12222233332 12334888777763
Q ss_pred hHHHHHHHHHHHHHHHHhhh-cCCCCchHHHHHH
Q 028630 75 PQDIRINLAISAAFTAWIAI-KRYAEYKPLQFLA 107 (206)
Q Consensus 75 ~~di~~~~ai~~~l~~w~~~-~~~~~~~~lq~la 107 (206)
+. -.++++.+.+.+.+ +.++.+.+++.+.
T Consensus 102 ---Ll-~lg~~aLlsgitaff~~nA~~~GlItll 131 (226)
T COG4858 102 ---LL-FLGAMALLSGITAFFQKNAQVYGLITLL 131 (226)
T ss_pred ---HH-HHHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 22 33445555556655 6677777777644
No 4
>PHA03102 Small T antigen; Reviewed
Probab=64.22 E-value=17 Score=30.27 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHhhh
Q 028630 2 VKAVYAKKRKEAE--RNNDEATAARLEKAYDKLMMEQLSKRK 41 (206)
Q Consensus 2 i~~~yar~~l~~~--~~~d~~~~~~IEaAYD~IlM~~L~~R~ 41 (206)
||+||.|.-+.-- -+||++..++|..||+.+--...+.|-
T Consensus 24 IKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~y 65 (153)
T PHA03102 24 MRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRD 65 (153)
T ss_pred HHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhccc
Confidence 8999987655421 246778899999999998766665553
No 5
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=59.27 E-value=47 Score=33.97 Aligned_cols=67 Identities=10% Similarity=0.138 Sum_probs=41.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCccchhhhhhhhHHHHH
Q 028630 71 AKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCL 150 (206)
Q Consensus 71 ~~Ps~~di~~~~ai~~~l~~w~~~~~~~~~~~lq~la~a~iYfl~~K~k~~~p~~~~~~~~~~~~~gRa~~~~~rll~~~ 150 (206)
..|+..+..++..+-..+..++...- +.|-.- ++.+.||+..+....- -|.. .+
T Consensus 25 ~~P~r~~~~~r~~~a~~L~l~i~~~l--~~P~~a-~a~~~vfivsqp~~g~---------------t~~k--------ai 78 (683)
T PRK11427 25 RRPGRVPQTLQLWVGCLLVILISMTF--EIPFLA-LSLAVLFYGIQSNAFY---------------TKFV--------AI 78 (683)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHc--CCCHHH-HHHHHHHheeccchHH---------------HHHH--------HH
Confidence 34677888877777776665555421 223333 6688889988776644 3333 55
Q ss_pred HHHHHHHHHHhhh
Q 028630 151 ALVFGVIAVSSLA 163 (206)
Q Consensus 151 ~Lv~G~i~gs~l~ 163 (206)
..++|+++|..+.
T Consensus 79 ~r~vgt~lg~~~~ 91 (683)
T PRK11427 79 LFVVATVLEIGSL 91 (683)
T ss_pred HHHHHHHHHHHHH
Confidence 5666777766665
No 6
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=54.15 E-value=16 Score=32.50 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHH
Q 028630 2 VKAVYAKKRKEAER--------NNDEATAARLEKAYDKL 32 (206)
Q Consensus 2 i~~~yar~~l~~~~--------~~d~~~~~~IEaAYD~I 32 (206)
||+||.| |.-+| .+|++..++|+.||.++
T Consensus 116 IKkaYR~--LSik~HPDK~~~~~~~e~~~~~I~KAY~aL 152 (230)
T KOG0721|consen 116 IKKAYRR--LSIKYHPDKQPPEEGDEEFFEAIAKAYQAL 152 (230)
T ss_pred HHHHHHH--hhhhhCCCcCCCcchhHHHHHHHHHHHHHh
Confidence 8999964 44445 56778999999999775
No 7
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=48.91 E-value=1.1e+02 Score=29.28 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=42.9
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCCCccchhhhhhhhHHHHHHHHHHHHHHHhhhhcchhhhhhccCCcCCccccchhH
Q 028630 108 FAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQE 187 (206)
Q Consensus 108 ~a~iYfl~~K~k~~~p~~~~~~~~~~~~~gRa~~~~~rll~~~~Lv~G~i~gs~l~~t~~l~~i~~~g~~~p~~~~~~~E 187 (206)
+++.|++++ ++..|...+.. ++++ .|....+++++....++++.++.+.+. . | -..+|.
T Consensus 190 ~~vl~~~~~--~~~~~~~~~~~--~~~~-~~~ai~~~~l~~~~~~vl~~vli~f~~--~-----~--~~~i~~------- 248 (424)
T COG1055 190 LVVLYLLFR--RKVIPERYDDL--LLLD-PREAIRDRALFKLSLVVLALVLIAFLL--L-----P--FLGIPV------- 248 (424)
T ss_pred HHHHHHHHH--hhhccccchhh--cccC-hhcccccHHHHHHHHHHHHHHHHHHHh--h-----c--ccCCCH-------
Confidence 778888887 33334333222 2222 223334566777777777777665553 1 1 223444
Q ss_pred HHHHHHHHHHHHHHhh
Q 028630 188 LIVTGSSAVLLFIMAS 203 (206)
Q Consensus 188 ~~vs~~~~v~L~l~ss 203 (206)
.+++++...++|+.+.
T Consensus 249 ~~val~~a~ill~~~~ 264 (424)
T COG1055 249 SLVALVGAAILLLLAR 264 (424)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5677888888877653
No 8
>COG4591 LolE ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]
Probab=46.02 E-value=55 Score=31.21 Aligned_cols=57 Identities=30% Similarity=0.413 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhhhhcchhh----hhhc-cC-----CcCCccccchhHHHHHHHHHHHHHHHhhcc
Q 028630 146 LLRCLALVFGVIAVSSLAYTGILN----LIEY-AG-----GFIPAFLFDNQELIVTGSSAVLLFIMASYY 205 (206)
Q Consensus 146 ll~~~~Lv~G~i~gs~l~~t~~l~----~i~~-~g-----~~~p~~~~~~~E~~vs~~~~v~L~l~ssfl 205 (206)
++++.|.++|+++|..+.+ .++ .+|. .+ ..+|..+ .-++.+..++..+++-+++|+|
T Consensus 325 ~iG~iG~llG~iLG~~~~~--~i~~~~~~~~~~~~~~~~~~~lP~~~-~~~di~~v~~~al~ls~lAtly 391 (408)
T COG4591 325 IIGLIGALLGVILGVLLAL--NLNSIIIFIEPLLGHTFGISTLPIEL-SLLDVVLVLVFALLLSLLATLY 391 (408)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHhcccccccceeccccCCcee-eHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888888877763 333 2221 11 2466643 2235556666666667777654
No 9
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=43.09 E-value=71 Score=23.87 Aligned_cols=18 Identities=6% Similarity=0.227 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 028630 187 ELIVTGSSAVLLFIMASY 204 (206)
Q Consensus 187 E~~vs~~~~v~L~l~ssf 204 (206)
-....+..+++-|+++-.
T Consensus 55 g~~~g~~~~~~~~~l~~~ 72 (91)
T PF04341_consen 55 GIVLGLGQIVFAWVLTWL 72 (91)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467788888888877654
No 10
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=42.73 E-value=42 Score=27.06 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=5.3
Q ss_pred HHHHHHHhhhccCCCCCCCCCCC
Q 028630 109 AFVYRFFEKLKSFEPAVSPTYTE 131 (206)
Q Consensus 109 a~iYfl~~K~k~~~p~~~~~~~~ 131 (206)
...|++.|+.|+-.+.+.+..++
T Consensus 83 li~y~irR~~Kk~~~~~~p~P~~ 105 (122)
T PF01102_consen 83 LISYCIRRLRKKSSSDVQPLPEE 105 (122)
T ss_dssp HHHHHHHHHS-------------
T ss_pred HHHHHHHHHhccCCCCCCCCCCC
Confidence 34555555555544444443444
No 11
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=41.86 E-value=81 Score=23.69 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHhhcc
Q 028630 185 NQELIVTGSSAVLLFIMASYY 205 (206)
Q Consensus 185 ~~E~~vs~~~~v~L~l~ssfl 205 (206)
.+|+.++.++.++|=+.+.|+
T Consensus 49 ~kEl~~a~vAS~flGfG~lFL 69 (77)
T PF05251_consen 49 AKELLIALVASLFLGFGSLFL 69 (77)
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 579999999988887766654
No 12
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=41.53 E-value=1.4e+02 Score=28.93 Aligned_cols=38 Identities=13% Similarity=0.016 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHH
Q 028630 75 PQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRF 114 (206)
Q Consensus 75 ~~di~~~~ai~~~l~~w~~~~~~~~~~~lq~la~a~iYfl 114 (206)
++-...|+.+..++++|.+..- --+++.|.+++|+-..
T Consensus 230 pkl~W~N~lLtl~lm~~Lv~gi--~p~~~lFmig~~iAL~ 267 (433)
T COG2851 230 PKLFWFNLLLTLALMGLLVSGI--FPPGVLFMIGFAIALP 267 (433)
T ss_pred cHHHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHH
Confidence 4668889999999998888733 2355666666655543
No 13
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=41.38 E-value=48 Score=21.73 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHH
Q 028630 2 VKAVYAKKRKEAERNN---------DEATAARLEKAYDKLM 33 (206)
Q Consensus 2 i~~~yar~~l~~~~~~---------d~~~~~~IEaAYD~Il 33 (206)
||++|-|-.+. |.- .++....|..||+.|.
T Consensus 18 ik~ay~~l~~~--~HPD~~~~~~~~~~~~~~~l~~Ay~~L~ 56 (60)
T smart00271 18 IKKAYRKLALK--YHPDKNPGDKEEAEEKFKEINEAYEVLS 56 (60)
T ss_pred HHHHHHHHHHH--HCcCCCCCchHHHHHHHHHHHHHHHHHc
Confidence 78888765443 422 2356677889998763
No 14
>PF10507 DUF2453: Protein of unknown function (DUF2453); InterPro: IPR019537 The function of these transmembrane protein is not known.
Probab=40.84 E-value=24 Score=28.16 Aligned_cols=45 Identities=22% Similarity=0.379 Sum_probs=30.1
Q ss_pred HHHHHHhhhccCCCCCCCCCCCCCCccchhhhhhhhHHHHHHHHHHHHHH
Q 028630 110 FVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAV 159 (206)
Q Consensus 110 ~iYfl~~K~k~~~p~~~~~~~~~~~~~gRa~~~~~rll~~~~Lv~G~i~g 159 (206)
.|=.+.+|.. + |.|.++++--+ .|..|+.+.+=+..|+.+||++|
T Consensus 58 ~vE~~~~rlg-~---~~P~Lt~~Q~~-~~~~r~a~~~G~~~Gv~iGClLG 102 (111)
T PF10507_consen 58 YVERLAQRLG-L---KAPVLTPAQLN-SRSTRWASNLGRAIGVTIGCLLG 102 (111)
T ss_pred HHHHHHHHhC-C---CCCCCCHHHHh-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665 3 33455544333 67777777788888888888888
No 15
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=37.83 E-value=91 Score=26.13 Aligned_cols=40 Identities=13% Similarity=0.057 Sum_probs=21.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhcchhhhhhccCCcCCccc
Q 028630 140 LRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFL 182 (206)
Q Consensus 140 ~~~~~rll~~~~Lv~G~i~gs~l~~t~~l~~i~~~g~~~p~~~ 182 (206)
=||-+|..-+.|+-.+.-++.+..+ .+| +.-....+|+|.
T Consensus 59 ~RM~rRm~~~~GiP~~lG~~~f~~~-y~l--~~~~~~dvP~~~ 98 (153)
T PF11947_consen 59 NRMLRRMAVFVGIPTALGVAVFVVF-YYL--KSRQIVDVPPWA 98 (153)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHH-HHH--HhccccccCchH
Confidence 3666666666665555555544432 232 333456788874
No 16
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=37.24 E-value=1e+02 Score=26.90 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=24.1
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHhhhhcchhhhhhccCCcCCc
Q 028630 137 GRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPA 180 (206)
Q Consensus 137 gRa~~~~~rll~~~~Lv~G~i~gs~l~~t~~l~~i~~~g~~~p~ 180 (206)
-+...|.-|+++.+.+++|..+-..... .++..+|+.|.-.+.
T Consensus 179 n~~~tW~lR~~G~llmf~G~~~~~~~l~-~l~~~~P~lg~l~~~ 221 (248)
T PF07787_consen 179 NNTLTWILRFIGWLLMFIGFFLLFSPLY-TLVDWIPLLGNLVGF 221 (248)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhceeechhhh
Confidence 4456676777777777777654433321 222455666654443
No 17
>PRK11677 hypothetical protein; Provisional
Probab=36.36 E-value=35 Score=27.92 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 028630 146 LLRCLALVFGVIAVSSLA 163 (206)
Q Consensus 146 ll~~~~Lv~G~i~gs~l~ 163 (206)
++.++||++|.++|.+++
T Consensus 4 ~~a~i~livG~iiG~~~~ 21 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAM 21 (134)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678899999999997776
No 18
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=36.16 E-value=48 Score=21.23 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHH
Q 028630 2 VKAVYAKKRKEAERNND--------EATAARLEKAYDKL 32 (206)
Q Consensus 2 i~~~yar~~l~~~~~~d--------~~~~~~IEaAYD~I 32 (206)
||++|.|-.+ +|.-| ++....|..||+.+
T Consensus 17 ik~~y~~l~~--~~HPD~~~~~~~~~~~~~~l~~Ay~~L 53 (55)
T cd06257 17 IKKAYRKLAL--KYHPDKNPDDPEAEEKFKEINEAYEVL 53 (55)
T ss_pred HHHHHHHHHH--HHCcCCCCCcHHHHHHHHHHHHHHHHh
Confidence 6788865433 33332 34556777888765
No 19
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=35.86 E-value=62 Score=21.69 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=9.1
Q ss_pred HHHH-HHHHHHHHHHhhc
Q 028630 188 LIVT-GSSAVLLFIMASY 204 (206)
Q Consensus 188 ~~vs-~~~~v~L~l~ssf 204 (206)
.++| +-+.++||+...+
T Consensus 29 ~i~aviGAiill~i~~~i 46 (48)
T PF04226_consen 29 FIVAVIGAIILLFIYRLI 46 (48)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4444 4455666765543
No 20
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=34.86 E-value=1.6e+02 Score=25.23 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHH
Q 028630 185 NQELIVTGSSAVLLFI 200 (206)
Q Consensus 185 ~~E~~vs~~~~v~L~l 200 (206)
..+.++|.+|..+||-
T Consensus 130 ~~nTiiT~~CiyiLyG 145 (173)
T PF11085_consen 130 DWNTIITTLCIYILYG 145 (173)
T ss_pred chhHHHHHHHHHHHHH
Confidence 4489999999999984
No 21
>PF04050 Upf2: Up-frameshift suppressor 2 ; InterPro: IPR007193 This entry represents Up-frameshift suppressor 2 (also known as Nonsense-mediated mRNA decay protein 2). Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay [].; PDB: 2WJV_D.
Probab=33.82 E-value=46 Score=27.64 Aligned_cols=26 Identities=31% Similarity=0.583 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhc
Q 028630 17 NDEATAARLEKAYDKLMMEQLSKRKK 42 (206)
Q Consensus 17 ~d~~~~~~IEaAYD~IlM~~L~~R~~ 42 (206)
.+++.-+..|+.|+++|.+++..|+.
T Consensus 57 ~~~~~e~dFeref~kmm~eS~~srk~ 82 (170)
T PF04050_consen 57 EDPEEEEDFEREFQKMMAESLESRKN 82 (170)
T ss_dssp -S--HHHHHHHHHHHHHHHHHHCH--
T ss_pred cCcchHHHHHHHHHHHHHHHHHhhcc
Confidence 44555589999999999999999988
No 22
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=33.59 E-value=90 Score=26.73 Aligned_cols=56 Identities=18% Similarity=0.309 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHhh--hhcchh---hhhhccCCcCCccccchhHHHHHHHHHHHHHHHhh
Q 028630 144 KRLLRCLALVFGVIAVSSL--AYTGIL---NLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMAS 203 (206)
Q Consensus 144 ~rll~~~~Lv~G~i~gs~l--~~t~~l---~~i~~~g~~~p~~~~~~~E~~vs~~~~v~L~l~ss 203 (206)
+|++...-|++..++.+.+ .||.-+ ++-.+.+...|.|+ ..+..++.+++|+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~qlInFlIlv~lL~ 66 (205)
T PRK06231 6 TRVFKLLLLSFSFLIISLFLVSCTENVEELKSKSIINELFPNFW----VFIAHLIAFSILLLLGI 66 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCChhhcCHHHHHHHhcCcHH----HHHHHHHHHHHHHHHHH
Confidence 3455555555555444443 234432 23333444466543 56677777777766543
No 23
>PRK14300 chaperone protein DnaJ; Provisional
Probab=31.24 E-value=90 Score=29.00 Aligned_cols=43 Identities=35% Similarity=0.413 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 028630 2 VKAVYAKKRKEAERNND-------EATAARLEKAYDKLMMEQLSKRKKGVTFGS 48 (206)
Q Consensus 2 i~~~yar~~l~~~~~~d-------~~~~~~IEaAYD~IlM~~L~~R~~g~~~Gk 48 (206)
||+||.|-. .+|.-| ++..+.|+.|||.+.=.. .|+.-..||.
T Consensus 20 ik~ayr~la--~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~--~r~~yD~~G~ 69 (372)
T PRK14300 20 LKKAYLKLA--KQYHPDTTDAKDAEKKFKEINAAYDVLKDEQ--KRAAYDRFGH 69 (372)
T ss_pred HHHHHHHHH--HHHCcCCCCCcCHHHHHHHHHHHHHHhhhHh--HhhHHHhccc
Confidence 899997543 335433 457789999999655433 3444334554
No 24
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=30.79 E-value=1.6e+02 Score=19.59 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHH---HhcCCH----HHHHHHHHHHHHHHHHH
Q 028630 2 VKAVYAKKRKEA---ERNNDE----ATAARLEKAYDKLMMEQ 36 (206)
Q Consensus 2 i~~~yar~~l~~---~~~~d~----~~~~~IEaAYD~IlM~~ 36 (206)
||++|.+-.+.- ..++++ +..+.|..||+.+-=..
T Consensus 17 ik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~ 58 (64)
T PF00226_consen 17 IKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPE 58 (64)
T ss_dssp HHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHH
Confidence 688886544331 135555 78888999998775443
No 25
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=30.58 E-value=93 Score=23.19 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhhhhcchhhhhhccCCcCCccccchhHHHHHHHHHHHHHHHhhcc
Q 028630 146 LLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYY 205 (206)
Q Consensus 146 ll~~~~Lv~G~i~gs~l~~t~~l~~i~~~g~~~p~~~~~~~E~~vs~~~~v~L~l~ssfl 205 (206)
.++.+-+.+|.++- .|.-+++...-.-.+.+ -.|+++|+.+.++|=+.+-||
T Consensus 20 hLttvLl~iG~fft------AwFf~~~VtStKy~r~l--~KELlIsl~aSvFlGFG~vFL 71 (79)
T KOG4452|consen 20 HLTTVLLGIGLFFT------AWFFMIQVTSTKYNRNL--LKELLISLTASVFLGFGSVFL 71 (79)
T ss_pred HHHHHHHHHHHHHH------HHHHheeEecchhhHHH--HHHHHHHHHHHHHHhhhHHHH
Confidence 45555555666544 34323333321222222 358999999888877766654
No 26
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.31 E-value=39 Score=26.92 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhh
Q 028630 148 RCLALVFGVIAVSSLA 163 (206)
Q Consensus 148 ~~~~Lv~G~i~gs~l~ 163 (206)
.++|||+|.++|.+++
T Consensus 2 ~~i~lvvG~iiG~~~~ 17 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIG 17 (128)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4678888888886665
No 27
>PRK14276 chaperone protein DnaJ; Provisional
Probab=28.72 E-value=86 Score=29.21 Aligned_cols=43 Identities=26% Similarity=0.364 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 028630 2 VKAVYAKKRKEAERNND-------EATAARLEKAYDKLMMEQLSKRKKGVTFGS 48 (206)
Q Consensus 2 i~~~yar~~l~~~~~~d-------~~~~~~IEaAYD~IlM~~L~~R~~g~~~Gk 48 (206)
||+||.|-. .+|.-| ++..+.|..||+.+--..- |+.=..||.
T Consensus 21 ik~ayr~la--~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~k--R~~YD~~G~ 70 (380)
T PRK14276 21 IKKAYRKLS--KKYHPDINKEPGAEEKYKEVQEAYETLSDPQK--RAAYDQYGA 70 (380)
T ss_pred HHHHHHHHH--HHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhh--hhhHhhcCC
Confidence 899997543 335444 4677899999998666553 333334454
No 28
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.09 E-value=59 Score=26.93 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 028630 146 LLRCLALVFGVIAVSSLA 163 (206)
Q Consensus 146 ll~~~~Lv~G~i~gs~l~ 163 (206)
.+..+|||+|.++|.+++
T Consensus 9 ~~a~igLvvGi~IG~li~ 26 (138)
T COG3105 9 EYALIGLVVGIIIGALIA 26 (138)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678899999999997776
No 29
>COG3162 Predicted membrane protein [Function unknown]
Probab=28.04 E-value=1.8e+02 Score=22.98 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=26.4
Q ss_pred HHHHHHHHH--HHHHHHhhhhcchhhhhhccCCcCCccccchhHHHHHHHHHHHHHHHhh
Q 028630 146 LLRCLALVF--GVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMAS 203 (206)
Q Consensus 146 ll~~~~Lv~--G~i~gs~l~~t~~l~~i~~~g~~~p~~~~~~~E~~vs~~~~v~L~l~ss 203 (206)
.+++.-|++ |.++-.+.. ++||+ .|..|.++.. -......-+++=|+++.
T Consensus 28 ~ltl~flv~Y~~filLiaf~-~~~l~-tp~~~~~Vt~------Gip~gvg~fv~tfVlt~ 79 (102)
T COG3162 28 PLTLIFLVVYFGFILLIAFA-PGWLA-TPLFGASVTR------GIPFGVGVFVMTFVLTG 79 (102)
T ss_pred HHHHHHHHHHHHHHHHHHhh-HHHhc-CcccCCceeh------hHhHHHHHHHHHHHHHH
Confidence 666666665 555444433 45773 3444444433 34555566666666554
No 30
>TIGR02212 lolCE lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC.
Probab=27.03 E-value=1.7e+02 Score=26.29 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 028630 146 LLRCLALVFGVIAVSSLA 163 (206)
Q Consensus 146 ll~~~~Lv~G~i~gs~l~ 163 (206)
+++++|.++|+++|..+.
T Consensus 322 ~l~l~g~~~G~~lg~~~~ 339 (411)
T TIGR02212 322 LIGVIGTLLGVILGVLLA 339 (411)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677778888888876665
No 31
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=26.82 E-value=88 Score=28.65 Aligned_cols=43 Identities=23% Similarity=0.395 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 028630 2 VKAVYAKKRKEAERNN-------DEATAARLEKAYDKLMMEQLSKRKKGVTFGS 48 (206)
Q Consensus 2 i~~~yar~~l~~~~~~-------d~~~~~~IEaAYD~IlM~~L~~R~~g~~~Gk 48 (206)
||+||.|-.+. |.- +++..++|..||| +|.+..+ |+.=..||.
T Consensus 17 ik~ayr~la~~--~HPD~~~~~~~~~~f~~i~~Ay~-vL~d~~~-R~~yd~~g~ 66 (354)
T TIGR02349 17 IKKAYRKLAKK--YHPDRNKDKEAEEKFKEINEAYE-VLSDPEK-RAQYDQFGH 66 (354)
T ss_pred HHHHHHHHHHH--HCCCCCCCccHHHHHHHHHHHHH-HhhChHH-HHhhhhccc
Confidence 89999765443 322 2356778999999 4555544 443233444
No 32
>COG4818 Predicted membrane protein [Function unknown]
Probab=26.75 E-value=2e+02 Score=22.81 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=8.8
Q ss_pred HHHHHHHHHhhc
Q 028630 193 SSAVLLFIMASY 204 (206)
Q Consensus 193 ~~~v~L~l~ssf 204 (206)
.+.++||++|-|
T Consensus 68 l~a~iLwlv~my 79 (105)
T COG4818 68 LAAFILWLVCMY 79 (105)
T ss_pred HHHHHHHHHHHH
Confidence 566788998854
No 33
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=26.35 E-value=80 Score=26.86 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=8.4
Q ss_pred chhhhhhhhHHH
Q 028630 137 GRALRMGKRLLR 148 (206)
Q Consensus 137 gRa~~~~~rll~ 148 (206)
||.++-|||+++
T Consensus 34 G~~~~DGrRilG 45 (175)
T PF01864_consen 34 GKTFRDGRRILG 45 (175)
T ss_pred CCccCCCCEecC
Confidence 777777777764
No 34
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=26.15 E-value=94 Score=23.91 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHH------hcCCHHHHHHHHHHHH
Q 028630 3 KAVYAKKRKEAE------RNNDEATAARLEKAYD 30 (206)
Q Consensus 3 ~~~yar~~l~~~------~~~d~~~~~~IEaAYD 30 (206)
|+.+|++++.+. +-.|++....||+|+-
T Consensus 69 K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaAV~ 102 (108)
T PF09682_consen 69 KKAEAVQYVKERLKKKGIKVTDEQIEGAIEAAVK 102 (108)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 566666666555 4456666677777764
No 35
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=26.02 E-value=82 Score=24.04 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=14.2
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 028630 17 NDEATAARLEKAYDKLMM 34 (206)
Q Consensus 17 ~d~~~~~~IEaAYD~IlM 34 (206)
...+....+|.|+|+|+-
T Consensus 61 K~~KKK~~ln~afDAiLN 78 (83)
T PF05814_consen 61 KSIKKKRDLNDAFDAILN 78 (83)
T ss_pred hhHHHHHHHHHHHHHHHh
Confidence 345677889999999983
No 36
>PF12645 HTH_16: Helix-turn-helix domain; InterPro: IPR024760 This domain appears to be a helix-turn-helix domain, suggesting a transcriptional regulatory protein. Some proteins with this domain are annotated as conjugative transposon proteins.
Probab=25.43 E-value=1.8e+02 Score=20.57 Aligned_cols=43 Identities=26% Similarity=0.488 Sum_probs=30.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHhh----hcCCCCCCcccccchh
Q 028630 11 KEAERNNDEATAARLEKAYDKLMMEQLSKR----KKGVTFGSFKVSKEIK 56 (206)
Q Consensus 11 l~~~~~~d~~~~~~IEaAYD~IlM~~L~~R----~~g~~~Gki~V~~~ir 56 (206)
+.+...||++++++|=.-|+-.|. +|..| ..|.++|. |.++.|
T Consensus 4 I~~A~~GD~~A~~~IL~~y~~yI~-kls~r~~~d~~g~~~~~--vDedl~ 50 (65)
T PF12645_consen 4 IKAAKQGDPEAMEEILKHYEPYIS-KLSTRTLYDEYGNVYGY--VDEDLK 50 (65)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHH-HHHHhhcccccCCcCce--eCHHHH
Confidence 345578999999999999998765 45555 56554444 555544
No 37
>PRK10814 outer membrane-specific lipoprotein transporter subunit LolC; Provisional
Probab=25.42 E-value=1.9e+02 Score=26.24 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 028630 146 LLRCLALVFGVIAVSSLA 163 (206)
Q Consensus 146 ll~~~~Lv~G~i~gs~l~ 163 (206)
++++.|.++|+++|..+.
T Consensus 320 ~~~~~G~~~G~~lg~~l~ 337 (399)
T PRK10814 320 SAGIIGALLGALLGALLA 337 (399)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666677777776554
No 38
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=25.40 E-value=84 Score=22.64 Aligned_cols=18 Identities=39% Similarity=0.530 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 028630 146 LLRCLALVFGVIAVSSLA 163 (206)
Q Consensus 146 ll~~~~Lv~G~i~gs~l~ 163 (206)
++-.+|+++|+++|..+.
T Consensus 60 lil~l~~~~Gl~lgi~~~ 77 (82)
T PF13807_consen 60 LILALGLFLGLILGIGLA 77 (82)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677888889999886664
No 39
>COG3601 Predicted membrane protein [Function unknown]
Probab=24.85 E-value=3.6e+02 Score=23.44 Aligned_cols=47 Identities=26% Similarity=0.360 Sum_probs=30.5
Q ss_pred CCCchHHHHHH----HHHHHHHHhhhccCCCCCCCCCCCCCCccchhhhhhhhHHHHHHHHHHHHHHHhhhhcchhh
Q 028630 97 YAEYKPLQFLA----FAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILN 169 (206)
Q Consensus 97 ~~~~~~lq~la----~a~iYfl~~K~k~~~p~~~~~~~~~~~~~gRa~~~~~rll~~~~Lv~G~i~gs~l~~t~~l~ 169 (206)
.+-+++.-+.+ ....|++++|.|+. . --..|+++|+++-+.++ ..||
T Consensus 75 ~~iG~~mNfiag~~fv~~~~~~~k~~ks~---------------~---------~~i~~~llgti~~t~~m--~~LN 125 (186)
T COG3601 75 DPIGPPMNFIAGGSFVLIAALIYKKKKST---------------K---------NLIVGLLLGTIAMTVVM--SLLN 125 (186)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhHH---------------H---------HHHHHHHHHHHHHHHHH--HHHH
Confidence 45567777666 44678888888866 2 23566777777666666 4555
No 40
>PRK11146 outer membrane-specific lipoprotein transporter subunit LolE; Provisional
Probab=24.65 E-value=1.6e+02 Score=26.86 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 028630 146 LLRCLALVFGVIAVSSLA 163 (206)
Q Consensus 146 ll~~~~Lv~G~i~gs~l~ 163 (206)
+++++|.++|+++|..+.
T Consensus 323 ~~~~~g~~~G~~lg~~~~ 340 (412)
T PRK11146 323 LAGLKGSLIGVVIGVVVS 340 (412)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666667777765554
No 41
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=23.76 E-value=2.4e+02 Score=30.13 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=21.5
Q ss_pred CCCCcCCCChHHHHHHHHHHHHHHHHhhh
Q 028630 66 WGPRFAKSSPQDIRINLAISAAFTAWIAI 94 (206)
Q Consensus 66 W~~r~~~Ps~~di~~~~ai~~~l~~w~~~ 94 (206)
|.|. .||..|-..++.+|.+.+++.++
T Consensus 61 w~p~--~~s~~~~~~r~~~~~~~l~y~F~ 87 (928)
T TIGR00845 61 WEPQ--NPSVGDKIARATVYFVAMVYMFL 87 (928)
T ss_pred ecCC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 8665 46899999999998887777666
No 42
>PF09514 SSXRD: SSXRD motif; InterPro: IPR019041 Protein SSX1 can repress transcription, and this has been attributed to a putative Kruppel associated box (KRAB) repression domain at the N terminus. However, from the analysis of these deletion constructs further repression activity was found at the C terminus of SSX1. Which has been called the SSXRD (SSX Repression Domain). The potent repression exerted by full-length SSX1 appears to localise to this region []. ; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.75 E-value=41 Score=21.63 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=13.8
Q ss_pred HHHHHHHhhhcCCCCCCc
Q 028630 32 LMMEQLSKRKKGVTFGSF 49 (206)
Q Consensus 32 IlM~~L~~R~~g~~~Gki 49 (206)
+-|-|||+|+.++.|-.|
T Consensus 9 vw~~rLRERk~~~~YeEI 26 (34)
T PF09514_consen 9 VWMYRLRERKNPVAYEEI 26 (34)
T ss_pred hhhhhhhhhccccceeec
Confidence 458899999987766664
No 43
>COG1823 Predicted Na+/dicarboxylate symporter [General function prediction only]
Probab=23.43 E-value=1.2e+02 Score=29.57 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=27.1
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCCCccchhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 028630 108 FAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAY 164 (206)
Q Consensus 108 ~a~iYfl~~K~k~~~p~~~~~~~~~~~~~gRa~~~~~rll~~~~Lv~G~i~gs~l~~ 164 (206)
+..++.+++|.-+| ++.+ +.||++|.++|..|.+
T Consensus 17 ~~~l~~~~~k~~sl---------------skrV--------~~aL~lG~vfG~~Lq~ 50 (458)
T COG1823 17 LLALAQMRRKQISL---------------SKRV--------LIALVLGVVFGLALQY 50 (458)
T ss_pred HHHHHHHHHHHHHH---------------HHHH--------HHHHHHHHHHHHHHHH
Confidence 44667778888888 6666 7889999999988864
No 44
>PF10190 Tmemb_170: Putative transmembrane protein 170; InterPro: IPR019334 This entry represents a group of putative transmembrane proteins conserved from nematodes to humans. The protein is only approximately 130 amino acids in length. The function is unknown.
Probab=22.51 E-value=3.9e+02 Score=21.07 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=19.3
Q ss_pred cCCcCCccccchhHHHHHHHHHHHHHHHhhccC
Q 028630 174 AGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR 206 (206)
Q Consensus 174 ~g~~~p~~~~~~~E~~vs~~~~v~L~l~ssflR 206 (206)
.+..+|++ |-++--+.-.++-+..||.|
T Consensus 73 ~~~~M~~~-----~a~vwGvgqt~~~~i~sFtR 100 (105)
T PF10190_consen 73 AGFRMSTW-----EAMVWGVGQTILHLIISFTR 100 (105)
T ss_pred cCCcccHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 56667775 67766666666777777766
No 45
>PRK10263 DNA translocase FtsK; Provisional
Probab=22.35 E-value=3.9e+02 Score=29.85 Aligned_cols=11 Identities=36% Similarity=0.640 Sum_probs=5.0
Q ss_pred hhhHHHHHHHH
Q 028630 143 GKRLLRCLALV 153 (206)
Q Consensus 143 ~~rll~~~~Lv 153 (206)
.+|+++++.++
T Consensus 113 ~lRliGlLLLL 123 (1355)
T PRK10263 113 SLRIIGVLALI 123 (1355)
T ss_pred HHHHHHHHHHH
Confidence 34455444443
No 46
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=21.55 E-value=84 Score=22.34 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhh
Q 028630 149 CLALVFGVIAVSSLA 163 (206)
Q Consensus 149 ~~~Lv~G~i~gs~l~ 163 (206)
+.|+++|.++|+.++
T Consensus 2 ~~g~l~Ga~~Ga~~g 16 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAG 16 (74)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467888888887775
No 47
>PRK13279 arnT 4-amino-4-deoxy-L-arabinose transferase; Provisional
Probab=21.43 E-value=5e+02 Score=25.80 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=8.1
Q ss_pred chhhhhhhhHHHHHHH
Q 028630 137 GRALRMGKRLLRCLAL 152 (206)
Q Consensus 137 gRa~~~~~rll~~~~L 152 (206)
+|+.|.|..+..++|+
T Consensus 342 ~~~~~~~~~i~~~~~~ 357 (552)
T PRK13279 342 PRALRINGWINLAFGL 357 (552)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5666555444444443
No 48
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=21.05 E-value=2.9e+02 Score=21.16 Aligned_cols=12 Identities=0% Similarity=-0.133 Sum_probs=9.4
Q ss_pred HHHHHHhhhccC
Q 028630 110 FVYRFFEKLKSF 121 (206)
Q Consensus 110 ~iYfl~~K~k~~ 121 (206)
.+||++.++++-
T Consensus 53 L~~FLHm~~~~~ 64 (94)
T TIGR02901 53 LIMFMHAGESED 64 (94)
T ss_pred HHHheeecCCcc
Confidence 789999887654
No 49
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=20.96 E-value=2e+02 Score=27.23 Aligned_cols=18 Identities=22% Similarity=0.527 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 028630 146 LLRCLALVFGVIAVSSLA 163 (206)
Q Consensus 146 ll~~~~Lv~G~i~gs~l~ 163 (206)
+++.+||++|.+++.++.
T Consensus 82 lf~tiGLiiGLlia~l~~ 99 (356)
T COG4956 82 LFGTIGLIIGLLIAVLLS 99 (356)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 899999999999987765
No 50
>TIGR01185 devC DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids.
Probab=20.53 E-value=1.9e+02 Score=26.77 Aligned_cols=52 Identities=17% Similarity=0.255 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcchhhhhhccCCcCCccccchhHHHHHHHHHHHHHHHhhc
Q 028630 146 LLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASY 204 (206)
Q Consensus 146 ll~~~~Lv~G~i~gs~l~~t~~l~~i~~~g~~~p~~~~~~~E~~vs~~~~v~L~l~ssf 204 (206)
+++++|.++|+++|..+. ..+. ....+|..+ +.+..+.+.+..++..+++++
T Consensus 314 ll~~iG~~~G~~lg~~~~--~~~~----~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~ 365 (380)
T TIGR01185 314 LLACLGYLPGWGFAILLY--TTAR----QATLLPVFM-SYDRAITVLILTMIMCFVSGS 365 (380)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHH----hhcCCCEEe-cHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777775553 1111 112344321 223455555555555555543
No 51
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=20.46 E-value=70 Score=16.23 Aligned_cols=11 Identities=27% Similarity=0.685 Sum_probs=8.3
Q ss_pred HHHHHHHHHHH
Q 028630 22 AARLEKAYDKL 32 (206)
Q Consensus 22 ~~~IEaAYD~I 32 (206)
-++++.||+.+
T Consensus 3 ~~~V~~aY~~l 13 (14)
T PF07709_consen 3 FEKVKNAYEQL 13 (14)
T ss_pred HHHHHHHHHhc
Confidence 46788999864
No 52
>PF11086 DUF2878: Protein of unknown function (DUF2878); InterPro: IPR021306 This bacterial family of proteins has no known function. Some members annotate the proteins as the permease component of a Mn2+/Zn2+ transport system however this cannot be confirmed.
Probab=20.27 E-value=4.9e+02 Score=21.31 Aligned_cols=34 Identities=29% Similarity=0.558 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhhhhcchhhhhhccCCcCCccc
Q 028630 147 LRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFL 182 (206)
Q Consensus 147 l~~~~Lv~G~i~gs~l~~t~~l~~i~~~g~~~p~~~ 182 (206)
+-+...++|+++=+++.++++++. ......|.|+
T Consensus 48 ~~~~~~~~G~~~D~~l~~~Gv~~f--~~~~~~PlWL 81 (152)
T PF11086_consen 48 LLLLAALLGILLDSLLLYLGVFSF--PGSSLFPLWL 81 (152)
T ss_pred HHHHHHHHHHHHHHHHHHCCeeec--CCCCCccHHH
Confidence 346778889999999887777642 1334577764
No 53
>PRK14291 chaperone protein DnaJ; Provisional
Probab=20.12 E-value=1.6e+02 Score=27.40 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHH
Q 028630 2 VKAVYAKKRKEAERNND-------EATAARLEKAYDKLMME 35 (206)
Q Consensus 2 i~~~yar~~l~~~~~~d-------~~~~~~IEaAYD~IlM~ 35 (206)
||+||.|-.+. |.-| ++.-+.|..|||.+--.
T Consensus 20 ik~ayr~la~~--~HPD~~~~~~~~~~f~~i~~Ay~vLsd~ 58 (382)
T PRK14291 20 IKKAYRRLARK--YHPDFNKNPEAEEKFKEINEAYQVLSDP 58 (382)
T ss_pred HHHHHHHHHHH--HCCCCCCCccHHHHHHHHHHHHHHhcCH
Confidence 89999765443 5444 35667999999855443
Done!