Query 028630
Match_columns 206
No_of_seqs 116 out of 130
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 00:24:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2guz_A Mitochondrial import in 75.7 2.1 7.2E-05 29.4 3.0 33 2-36 32-68 (71)
2 1faf_A Large T antigen; J doma 65.0 15 0.0005 25.6 5.6 37 2-40 30-70 (79)
3 2o37_A Protein SIS1; HSP40, J- 51.9 21 0.00071 25.3 4.5 33 2-36 25-62 (92)
4 2gqb_A Conserved hypothetical 50.2 13 0.00043 29.4 3.3 43 7-56 85-129 (130)
5 2dn9_A DNAJ homolog subfamily 49.0 32 0.0011 23.2 5.0 36 2-39 24-67 (79)
6 2cug_A Mkiaa0962 protein; DNAJ 48.3 25 0.00085 24.6 4.4 36 2-39 34-76 (88)
7 2guz_B Mitochondrial import in 45.6 56 0.0019 22.2 5.7 32 2-35 24-59 (65)
8 2wjv_D Regulator of nonsense t 44.7 15 0.00051 27.1 2.8 25 18-42 5-29 (97)
9 2ctr_A DNAJ homolog subfamily 42.9 32 0.0011 24.0 4.3 33 2-36 24-63 (88)
10 2och_A Hypothetical protein DN 41.6 31 0.0011 23.1 3.9 32 2-35 25-61 (73)
11 2ys8_A RAB-related GTP-binding 39.3 30 0.001 24.4 3.7 32 2-35 44-82 (90)
12 2ctp_A DNAJ homolog subfamily 36.4 32 0.0011 23.2 3.4 34 2-37 24-64 (78)
13 2dmx_A DNAJ homolog subfamily 34.2 71 0.0024 22.2 5.0 35 2-38 26-69 (92)
14 2yua_A Williams-beuren syndrom 33.9 44 0.0015 23.8 3.9 36 2-39 34-77 (99)
15 2ej7_A HCG3 gene; HCG3 protein 31.3 47 0.0016 22.6 3.5 31 2-34 26-65 (82)
16 1hdj_A Human HSP40, HDJ-1; mol 27.9 55 0.0019 22.0 3.4 33 2-36 20-59 (77)
17 3zyq_A Hepatocyte growth facto 27.9 85 0.0029 25.8 5.1 46 14-69 119-164 (226)
18 2hba_A BL17, 50S ribosomal pro 22.9 15 0.00051 24.5 -0.4 13 2-14 21-33 (52)
19 2ctw_A DNAJ homolog subfamily 21.7 1.2E+02 0.0039 22.0 4.3 36 2-39 34-77 (109)
20 1wjz_A 1700030A21RIK protein; 21.2 36 0.0012 23.7 1.4 30 2-33 33-76 (94)
21 2qsa_A DNAJ homolog DNJ-2; J-d 21.1 1.2E+02 0.0042 21.6 4.4 35 2-38 33-78 (109)
22 2ctq_A DNAJ homolog subfamily 21.0 1.3E+02 0.0044 21.8 4.5 34 2-37 37-78 (112)
No 1
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=75.72 E-value=2.1 Score=29.35 Aligned_cols=33 Identities=21% Similarity=0.136 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHH
Q 028630 2 VKAVYAKKRKEAER----NNDEATAARLEKAYDKLMMEQ 36 (206)
Q Consensus 2 i~~~yar~~l~~~~----~~d~~~~~~IEaAYD~IlM~~ 36 (206)
||+||-| +..+| +|+++...+|..|||.+.-..
T Consensus 32 Ik~ayr~--l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~ 68 (71)
T 2guz_A 32 LKEVHRK--IMLANHPDKGGSPFLATKINEAKDFLEKRG 68 (71)
T ss_dssp HHHHHHH--HHHHHCGGGTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH--HHHHHCCCCCCCHHHHHHHHHHHHHHhhhh
Confidence 7899965 33344 688999999999999886543
No 2
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=65.00 E-value=15 Score=25.59 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHHhh
Q 028630 2 VKAVYAKKRKEAER----NNDEATAARLEKAYDKLMMEQLSKR 40 (206)
Q Consensus 2 i~~~yar~~l~~~~----~~d~~~~~~IEaAYD~IlM~~L~~R 40 (206)
||+||-| +..+| ++|++.-.+|-.||+.+.-...+.|
T Consensus 30 Ik~aYr~--la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~ 70 (79)
T 1faf_A 30 MQQAYKQ--QSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLR 70 (79)
T ss_dssp HHHHHHH--HHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH--HHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 7899965 33344 5778899999999997765444444
No 3
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=51.92 E-value=21 Score=25.27 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHH
Q 028630 2 VKAVYAKKRKEAER-----NNDEATAARLEKAYDKLMMEQ 36 (206)
Q Consensus 2 i~~~yar~~l~~~~-----~~d~~~~~~IEaAYD~IlM~~ 36 (206)
||+||-|-. .+| .++++...+|..||+.+.=..
T Consensus 25 Ik~ayr~l~--~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~ 62 (92)
T 2o37_A 25 LKKGYRKAA--LKYHPDKPTGDTEKFKEISEAFEILNDPQ 62 (92)
T ss_dssp HHHHHHHHH--HHHCTTSTTCCHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHHHHH--HHHCcCCCCChHHHHHHHHHHHHHHCCHH
Confidence 789996533 334 467788899999999765443
No 4
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=50.22 E-value=13 Score=29.43 Aligned_cols=43 Identities=30% Similarity=0.402 Sum_probs=35.1
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccchh
Q 028630 7 AKKRKEAE--RNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIK 56 (206)
Q Consensus 7 ar~~l~~~--~~~d~~~~~~IEaAYD~IlM~~L~~R~~g~~~Gki~V~~~ir 56 (206)
+|++|-++ |.+|..--+...-+.-+-+|++|. ..| || ||.+++
T Consensus 85 ~RkeLA~eL~~~~~~~dSA~mNiwLHk~vm~kLa--~NG---Gk--vP~~l~ 129 (130)
T 2gqb_A 85 ARKELAKELGYSGDMNDSASMNIWLHKQVMSKLV--ANG---GK--LPPEIK 129 (130)
T ss_dssp HHHHHHHHHTCCCSSCHHHHHHHHHHHHHHHHHG--GGS---EE--CCTTCC
T ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHH--HhC---CC--CChhhc
Confidence 68888777 778888888899999999999998 565 66 787654
No 5
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.96 E-value=32 Score=23.23 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHHHHHHh
Q 028630 2 VKAVYAKKRKEAERNND--------EATAARLEKAYDKLMMEQLSK 39 (206)
Q Consensus 2 i~~~yar~~l~~~~~~d--------~~~~~~IEaAYD~IlM~~L~~ 39 (206)
||+||-|-. .+|.-| ++....|..||+.+.-...|.
T Consensus 24 Ik~ayr~l~--~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 67 (79)
T 2dn9_A 24 IKKAYYQLA--KKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67 (79)
T ss_dssp HHHHHHHHH--HHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHH--HHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 789997543 345433 466789999999877655443
No 6
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=48.28 E-value=25 Score=24.58 Aligned_cols=36 Identities=31% Similarity=0.399 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHHHHh
Q 028630 2 VKAVYAKKRKEAERNND-------EATAARLEKAYDKLMMEQLSK 39 (206)
Q Consensus 2 i~~~yar~~l~~~~~~d-------~~~~~~IEaAYD~IlM~~L~~ 39 (206)
||+||-|- ..+|.-| ++.-.+|..||+.+.-...|.
T Consensus 34 Ik~ayr~l--~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 76 (88)
T 2cug_A 34 IKKAYKKL--AREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRT 76 (88)
T ss_dssp HHHHHHHH--HHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHH--HHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHH
Confidence 78999754 3345433 467889999999987665443
No 7
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=45.62 E-value=56 Score=22.23 Aligned_cols=32 Identities=9% Similarity=0.073 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHH
Q 028630 2 VKAVYAKKRKEAER----NNDEATAARLEKAYDKLMME 35 (206)
Q Consensus 2 i~~~yar~~l~~~~----~~d~~~~~~IEaAYD~IlM~ 35 (206)
|+++|-| |..++ +|.+-..++|..|+|.+..+
T Consensus 24 Ik~~yr~--Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 24 INNRFNY--LFEVNDKEKGGSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHHH--HHHHTCGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 6777754 33333 47788899999999886654
No 8
>2wjv_D Regulator of nonsense transcripts 2; hydrolase, zinc-finger, ATP-binding, RNA-binding, nonsense-M mRNA decay, nucleotide-binding, metal-binding; 2.85A {Homo sapiens}
Probab=44.72 E-value=15 Score=27.13 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhc
Q 028630 18 DEATAARLEKAYDKLMMEQLSKRKK 42 (206)
Q Consensus 18 d~~~~~~IEaAYD~IlM~~L~~R~~ 42 (206)
+.+--+..|.+||++|.+++..|+.
T Consensus 5 ~~~ed~eFdre~~kmm~eS~~sRk~ 29 (97)
T 2wjv_D 5 PCVEDEDFIQALDKMMLENLQQRSG 29 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CcHhHHHHHHHHHHHHHHHHHHhhc
Confidence 4455678999999999999999986
No 9
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.92 E-value=32 Score=23.97 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHH
Q 028630 2 VKAVYAKKRKEAERNND-------EATAARLEKAYDKLMMEQ 36 (206)
Q Consensus 2 i~~~yar~~l~~~~~~d-------~~~~~~IEaAYD~IlM~~ 36 (206)
||+||-|- ..+|.-| ++...+|..||+.+.=..
T Consensus 24 Ik~ayr~l--~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~ 63 (88)
T 2ctr_A 24 IKKAFHKL--AMKYHPDKNKSPDAEAKFREIAEAYETLSDAN 63 (88)
T ss_dssp HHHHHHHH--HHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSH
T ss_pred HHHHHHHH--HHHHCcCCCCChHHHHHHHHHHHHHHHHCCHH
Confidence 78999653 4446544 456778999999775443
No 10
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=41.56 E-value=31 Score=23.08 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHH
Q 028630 2 VKAVYAKKRKEAERN-----NDEATAARLEKAYDKLMME 35 (206)
Q Consensus 2 i~~~yar~~l~~~~~-----~d~~~~~~IEaAYD~IlM~ 35 (206)
||+||-+- ..+|. ++++...+|..||+.+.=.
T Consensus 25 Ik~ayr~l--~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~ 61 (73)
T 2och_A 25 LKKAYRKM--ALKFHPDKNPDGAEQFKQISQAYEVLSDE 61 (73)
T ss_dssp HHHHHHHH--HHHTCTTTCTTCHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHHH--HHHHCcCCCcCHHHHHHHHHHHHHHHCCH
Confidence 78999653 33343 3467888999999965433
No 11
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.32 E-value=30 Score=24.39 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHHH
Q 028630 2 VKAVYAKKRKEAERN-------NDEATAARLEKAYDKLMME 35 (206)
Q Consensus 2 i~~~yar~~l~~~~~-------~d~~~~~~IEaAYD~IlM~ 35 (206)
||+||-| +..+|. ++++.-.+|..||+.+.-.
T Consensus 44 Ik~aYr~--la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~ 82 (90)
T 2ys8_A 44 VNKAYRK--LAVLLHPDKCVAPGSEDAFKAVVNARTALLKN 82 (90)
T ss_dssp HHHHHHH--HHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHCcCCCCCccHHHHHHHHHHHHHHHCCc
Confidence 8999965 344454 3456788999999976544
No 12
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.43 E-value=32 Score=23.22 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHHH
Q 028630 2 VKAVYAKKRKEAERNND-------EATAARLEKAYDKLMMEQL 37 (206)
Q Consensus 2 i~~~yar~~l~~~~~~d-------~~~~~~IEaAYD~IlM~~L 37 (206)
||+||-+-. .+|.-| ++...+|..||+.+.-...
T Consensus 24 Ik~ayr~l~--~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~ 64 (78)
T 2ctp_A 24 LKKAYRRLA--LKFHPDKNHAPGATEAFKAIGTAYAVLSNPEK 64 (78)
T ss_dssp HHHHHHHHH--TTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHH--HHHCcCCCCCccHHHHHHHHHHHHHHHCCHHH
Confidence 788886543 345433 4677889999997655443
No 13
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.18 E-value=71 Score=22.19 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHHHHHHH
Q 028630 2 VKAVYAKKRKEAERNND---------EATAARLEKAYDKLMMEQLS 38 (206)
Q Consensus 2 i~~~yar~~l~~~~~~d---------~~~~~~IEaAYD~IlM~~L~ 38 (206)
||+||-|-. .+|.-| ++...+|..||+.+.-...|
T Consensus 26 Ik~ayr~l~--~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 69 (92)
T 2dmx_A 26 IKKAYRKLA--LRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69 (92)
T ss_dssp HHHHHHHHH--HHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHH--HHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 789997643 345333 34567899999988655443
No 14
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.89 E-value=44 Score=23.81 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHHHHHHh
Q 028630 2 VKAVYAKKRKEAERNND--------EATAARLEKAYDKLMMEQLSK 39 (206)
Q Consensus 2 i~~~yar~~l~~~~~~d--------~~~~~~IEaAYD~IlM~~L~~ 39 (206)
||+||-| +..+|.-| .+.-.+|..||+.+.-...|.
T Consensus 34 Ik~ayr~--l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 77 (99)
T 2yua_A 34 IKAAYYR--QCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77 (99)
T ss_dssp HHHHHHH--HHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHH--HHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 8899965 44445332 346678999999887665544
No 15
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.32 E-value=47 Score=22.55 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHHH
Q 028630 2 VKAVYAKKRKEAERNND---------EATAARLEKAYDKLMM 34 (206)
Q Consensus 2 i~~~yar~~l~~~~~~d---------~~~~~~IEaAYD~IlM 34 (206)
||+||-|- ..+|.-| ++...+|..||+.+.=
T Consensus 26 Ik~ayr~l--~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d 65 (82)
T 2ej7_A 26 IKKAYRKL--ALKWHPDKNPENKEEAERRFKQVAEAYEVLSD 65 (82)
T ss_dssp HHHHHHHH--HTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHH--HHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCC
Confidence 78999763 3344333 2356689999997653
No 16
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=27.92 E-value=55 Score=21.95 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHH
Q 028630 2 VKAVYAKKRKEAERNND-------EATAARLEKAYDKLMMEQ 36 (206)
Q Consensus 2 i~~~yar~~l~~~~~~d-------~~~~~~IEaAYD~IlM~~ 36 (206)
||+||-+ +..+|.-| ++.-..|..||+.+.=..
T Consensus 20 Ik~ayr~--l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~ 59 (77)
T 1hdj_A 20 IKRAYRR--QALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPR 59 (77)
T ss_dssp HHHHHHH--HHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHH--HHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHH
Confidence 7899965 44445433 467789999999765443
No 17
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.90 E-value=85 Score=25.82 Aligned_cols=46 Identities=22% Similarity=0.361 Sum_probs=28.9
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccchhccccCCCCCCCCC
Q 028630 14 ERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPR 69 (206)
Q Consensus 14 ~~~~d~~~~~~IEaAYD~IlM~~L~~R~~g~~~Gki~V~~~ir~ad~~~~~PW~~r 69 (206)
.+.+|++ ...|+.+|+.+ +++|+.|+.++-+ +.-+.+ +..+.|.+.
T Consensus 119 ~f~~~~~-l~~i~~~Y~~L-------k~~G~~FP~~~~~-damf~~-~~~p~W~~~ 164 (226)
T 3zyq_A 119 AFRNEPK-YKVVQDTYQIM-------KVEGHVFPEFKES-DAMFAA-ERAPDWVDA 164 (226)
T ss_dssp HTTTCGG-GHHHHHHHHHH-------HHHTCCCCCCCGG-GGCCCC-CCCCCCCCC
T ss_pred HhCCCcc-hHHHHHHHHHH-------HhcCCCcccchhH-HHhhhc-ccccccccC
Confidence 4667665 46799999875 6789999885432 333322 334458764
No 18
>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A
Probab=22.88 E-value=15 Score=24.48 Aligned_cols=13 Identities=23% Similarity=0.087 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHH
Q 028630 2 VKAVYAKKRKEAE 14 (206)
Q Consensus 2 i~~~yar~~l~~~ 14 (206)
|+.-||||+|+-+
T Consensus 21 V~~GYaRN~LiP~ 33 (52)
T 2hba_A 21 VADGYANNFLFKQ 33 (52)
T ss_dssp CCHHHHHHTTTTT
T ss_pred EcCCceehhhccC
Confidence 6778999999855
No 19
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.70 E-value=1.2e+02 Score=22.01 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHhc-----CC---HHHHHHHHHHHHHHHHHHHHh
Q 028630 2 VKAVYAKKRKEAERN-----ND---EATAARLEKAYDKLMMEQLSK 39 (206)
Q Consensus 2 i~~~yar~~l~~~~~-----~d---~~~~~~IEaAYD~IlM~~L~~ 39 (206)
||+||-|- ..+|. ++ ++.-.+|..||+.+.=...|.
T Consensus 34 Ik~aYr~l--a~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~ 77 (109)
T 2ctw_A 34 IKKSYRKL--ALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRN 77 (109)
T ss_dssp HHHHHHHH--HHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHH--HHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 88999654 33343 23 345568999999886554443
No 20
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=21.20 E-value=36 Score=23.69 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHhcCCH--------------HHHHHHHHHHHHHH
Q 028630 2 VKAVYAKKRKEAERNNDE--------------ATAARLEKAYDKLM 33 (206)
Q Consensus 2 i~~~yar~~l~~~~~~d~--------------~~~~~IEaAYD~Il 33 (206)
||+||-| +..+|.-|. +.-.+|..||+.+.
T Consensus 33 Ik~aYr~--l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~ 76 (94)
T 1wjz_A 33 LKQKYQK--LILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76 (94)
T ss_dssp HHHHHHH--TTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHH--HHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHC
Confidence 7888854 333344333 45668888998764
No 21
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=21.13 E-value=1.2e+02 Score=21.64 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHHHHHHH
Q 028630 2 VKAVYAKKRKEAERNND-----------EATAARLEKAYDKLMMEQLS 38 (206)
Q Consensus 2 i~~~yar~~l~~~~~~d-----------~~~~~~IEaAYD~IlM~~L~ 38 (206)
||+||-| +..+|.-| ++.-.+|..||+.+.=...|
T Consensus 33 Ik~aYr~--l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R 78 (109)
T 2qsa_A 33 LAKAYRA--LARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAK 78 (109)
T ss_dssp HHHHHHH--HHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHH--HHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHH
Confidence 7889965 33445444 35667889999887654433
No 22
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.01 E-value=1.3e+02 Score=21.81 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHhcC-----C---HHHHHHHHHHHHHHHHHHH
Q 028630 2 VKAVYAKKRKEAERNN-----D---EATAARLEKAYDKLMMEQL 37 (206)
Q Consensus 2 i~~~yar~~l~~~~~~-----d---~~~~~~IEaAYD~IlM~~L 37 (206)
||+||-| +..+|.- | ++.-.+|..||+.+.=...
T Consensus 37 Ik~ayr~--l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~ 78 (112)
T 2ctq_A 37 ILAEFKV--RALECHPDKHPENPKAVETFQKLQKAKEILTNEES 78 (112)
T ss_dssp HHHHHHH--HHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHH--HHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHH
Confidence 7899954 3333432 2 4567789999998865443
Done!