Query 028630
Match_columns 206
No_of_seqs 116 out of 130
Neff 4.7
Searched_HMMs 13730
Date Tue Mar 26 00:24:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028630.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028630hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fafa_ a.2.3.1 (A:) Large T a 62.5 6.1 0.00044 26.4 4.9 41 2-42 30-72 (79)
2 d2e74f1 f.23.25.1 (F:1-32) Pet 45.4 5.4 0.00039 22.6 1.8 18 146-163 10-27 (32)
3 d2gqba1 a.282.1.1 (A:1-130) Hy 39.8 12 0.0009 27.6 3.6 43 7-56 85-129 (130)
4 d2hbaa1 d.100.1.1 (A:1-52) Rib 27.9 4.9 0.00036 25.2 -0.4 14 2-15 21-34 (52)
5 d1nkzb_ f.3.1.1 (B:) Light-har 27.3 9.1 0.00066 23.0 0.8 32 134-168 9-40 (41)
6 d2j01i2 d.100.1.1 (I:1-55) Rib 25.2 5.9 0.00043 25.1 -0.4 13 2-14 21-33 (55)
7 d1hdja_ a.2.3.1 (A:) HSP40 {Hu 21.7 35 0.0026 21.7 3.1 32 2-35 20-58 (77)
8 d1wjza_ a.2.3.1 (A:) CSL-type 17.2 32 0.0024 22.9 2.1 11 22-32 65-75 (94)
9 d1dlwa_ a.1.1.1 (A:) Protozoan 15.0 53 0.0039 21.8 2.9 23 11-33 2-24 (116)
10 d1xbla_ a.2.3.1 (A:) DnaJ chap 14.6 94 0.0068 19.4 4.0 30 2-33 20-57 (75)
No 1
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}
Probab=62.51 E-value=6.1 Score=26.40 Aligned_cols=41 Identities=12% Similarity=0.210 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHhhhc
Q 028630 2 VKAVYAKKRKEAE--RNNDEATAARLEKAYDKLMMEQLSKRKK 42 (206)
Q Consensus 2 i~~~yar~~l~~~--~~~d~~~~~~IEaAYD~IlM~~L~~R~~ 42 (206)
||+||-|--+.-- -+||++...+|-.||+.+.=...+.|-.
T Consensus 30 IkkaYr~l~~~~HPDk~g~~e~~~~in~Ay~~L~d~~~r~~~~ 72 (79)
T d1fafa_ 30 MQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp HHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHCCHHHHHHHc
Confidence 7899975544411 2678999999999999887776666655
No 2
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=45.45 E-value=5.4 Score=22.62 Aligned_cols=18 Identities=22% Similarity=-0.014 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 028630 146 LLRCLALVFGVIAVSSLA 163 (206)
Q Consensus 146 ll~~~~Lv~G~i~gs~l~ 163 (206)
+++++-.++||-+|.+|-
T Consensus 10 ~lsfglifvgwglgalll 27 (32)
T d2e74f1 10 LLSFGLIFVGWGLGVLLL 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhHHHHHHh
Confidence 777777777999997764
No 3
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=39.81 E-value=12 Score=27.59 Aligned_cols=43 Identities=30% Similarity=0.402 Sum_probs=35.2
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccchh
Q 028630 7 AKKRKEAE--RNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIK 56 (206)
Q Consensus 7 ar~~l~~~--~~~d~~~~~~IEaAYD~IlM~~L~~R~~g~~~Gki~V~~~ir 56 (206)
+|+.|-+| |.+|..--+..--+.-+-+|++|. .+| || ||.++|
T Consensus 85 aRKeLA~EL~y~gd~~dSA~mNiwLhk~vm~kLa--~Ng---G~--vP~dLk 129 (130)
T d2gqba1 85 ARKELAKELGYSGDMNDSASMNIWLHKQVMSKLV--ANG---GK--LPPEIK 129 (130)
T ss_dssp HHHHHHHHHTCCCSSCHHHHHHHHHHHHHHHHHG--GGS---EE--CCTTCC
T ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHH--HhC---CC--CChhhc
Confidence 68888877 888988888999999999999994 344 66 788765
No 4
>d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=27.88 E-value=4.9 Score=25.23 Aligned_cols=14 Identities=21% Similarity=0.057 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHh
Q 028630 2 VKAVYAKKRKEAER 15 (206)
Q Consensus 2 i~~~yar~~l~~~~ 15 (206)
|+.-||||+|+-+-
T Consensus 21 Vk~GyarN~LiP~g 34 (52)
T d2hbaa1 21 VADGYANNFLFKQG 34 (52)
T ss_dssp CCHHHHHHTTTTTT
T ss_pred EcccchhHhhccCC
Confidence 67899999998653
No 5
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=27.32 E-value=9.1 Score=23.01 Aligned_cols=32 Identities=28% Similarity=0.266 Sum_probs=22.2
Q ss_pred CccchhhhhhhhHHHHHHHHHHHHHHHhhhhcchh
Q 028630 134 DDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGIL 168 (206)
Q Consensus 134 ~~~gRa~~~~~rll~~~~Lv~G~i~gs~l~~t~~l 168 (206)
|+.-+-+..|.|.++..+++.=.++. ++|+||
T Consensus 9 EElHk~vIdGtRvF~~iA~~AH~La~---~~tPWL 40 (41)
T d1nkzb_ 9 EELHKYVIDGTRVFLGLALVAHFLAF---SATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHSSTT
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHH---HhCccc
Confidence 33356677888999888888766643 456886
No 6
>d2j01i2 d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Thermus thermophilus [TaxId: 274]}
Probab=25.17 E-value=5.9 Score=25.13 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHH
Q 028630 2 VKAVYAKKRKEAE 14 (206)
Q Consensus 2 i~~~yar~~l~~~ 14 (206)
|+.-||||+|+-+
T Consensus 21 Vk~GyaRN~LiP~ 33 (55)
T d2j01i2 21 VKPGYARNYLLPR 33 (55)
T ss_dssp CCHHHHHHTTTTT
T ss_pred EChhhHHHHhccc
Confidence 6788999999865
No 7
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.66 E-value=35 Score=21.68 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHH
Q 028630 2 VKAVYAKKRKEAERNND-------EATAARLEKAYDKLMME 35 (206)
Q Consensus 2 i~~~yar~~l~~~~~~d-------~~~~~~IEaAYD~IlM~ 35 (206)
|++||-| +..++.-| .+....|+.||+.+-=.
T Consensus 20 Ik~ay~~--l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp 58 (77)
T d1hdja_ 20 IKRAYRR--QALRYHPDKNKEPGAEEKFKEIAEAYDVLSDP 58 (77)
T ss_dssp HHHHHHH--HHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH--HHHHhccccccchhHHHHHHHHHHHHHHhcCH
Confidence 7889954 44445443 24567888888866533
No 8
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.16 E-value=32 Score=22.91 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=7.3
Q ss_pred HHHHHHHHHHH
Q 028630 22 AARLEKAYDKL 32 (206)
Q Consensus 22 ~~~IEaAYD~I 32 (206)
...|..||+.+
T Consensus 65 f~~I~~Ay~vL 75 (94)
T d1wjza_ 65 FIEIDQAWKIL 75 (94)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 45677788755
No 9
>d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]}
Probab=15.03 E-value=53 Score=21.78 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=20.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHH
Q 028630 11 KEAERNNDEATAARLEKAYDKLM 33 (206)
Q Consensus 11 l~~~~~~d~~~~~~IEaAYD~Il 33 (206)
|.++.+|++...+-++.-||+|+
T Consensus 2 LyerlGG~~~I~~lv~~fY~~i~ 24 (116)
T d1dlwa_ 2 LFEQLGGQAAVQAVTAQFYANIQ 24 (116)
T ss_dssp HHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHH
Confidence 56789999999999999999885
No 10
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}
Probab=14.61 E-value=94 Score=19.41 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHhcC-----CH---HHHHHHHHHHHHHH
Q 028630 2 VKAVYAKKRKEAERNN-----DE---ATAARLEKAYDKLM 33 (206)
Q Consensus 2 i~~~yar~~l~~~~~~-----d~---~~~~~IEaAYD~Il 33 (206)
||+||-|-.+ +|.- |+ +.-..|..||+.+.
T Consensus 20 Ik~aYr~l~~--~~HPDk~~~~~~~~~~f~~i~~Ay~vL~ 57 (75)
T d1xbla_ 20 IRKAYKRLAM--KYHPDRNQGDKEAEAKFKEIKEAYEVLT 57 (75)
T ss_dssp HHHHHHHHHH--HTCCTTCTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh--hhhhhccCCChHHHHHHHHHHHHHHhcC
Confidence 8999964443 3443 22 34677889998764
Done!