BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028633
         (206 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4EV1|A Chain A, Anabaena Tic22 (Protein Transport)
          Length = 252

 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 104/219 (47%), Gaps = 36/219 (16%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVS--------GAKTGKSLGLMCFKKEDAEALLH 52
           +S + I+E+L  VP+Y ++  NE+ + +S        G K G S+      +++A+A ++
Sbjct: 2   LSEQQIKEKLDSVPIYLVT--NEKGLPLSRPLPNAPNGQKAGGSITGAYMSRQEAQAFIN 59

Query: 53  QM---KSMDPAMRK--EGSRVVPVPLNKVFQL------KVNGVAFRLIPESTQVKNALRE 101
           ++   K+ DP M++  +  +V  VPL  ++Q         N + F   P   ++K A+  
Sbjct: 60  ELRNAKNKDPKMQEIVKSLQVTAVPLGVIYQQLQQTKKDPNRLLFAFKPVDQEIKGAMDL 119

Query: 102 MEKAGFSDDAFAGVPVFQSR--------SLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQ 153
           + ++G   + F  VP+F  R         + + + N+   P+F  K+D +  L       
Sbjct: 120 LRQSGQQVNQFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVPLFLSKQDAQGLL------- 172

Query: 154 NKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIP 192
            ++ P     DIQV   + +++ +++   +  N VV +P
Sbjct: 173 GQVKPKHPKADIQVLDIDGVLQTLQDKNDTWLNQVVLVP 211


>pdb|4E6Z|A Chain A, Tic22 From Plasmodium Falciparum
          Length = 279

 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/186 (19%), Positives = 73/186 (39%), Gaps = 29/186 (15%)

Query: 6   IEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEG 65
           IEE+L  +PV+ ++N N    +    +       +C    DAE  L+     +       
Sbjct: 70  IEEKLEVIPVFLITNYNSSPYIFQENEKQVCYXFLC--PYDAENXLNDXIKYNGXKYNGN 127

Query: 66  SRVVPVPLNKVFQL------------------KVNGVAFRLIPESTQVKNALREMEKAGF 107
            ++  +   K ++L                  K   + ++LI    Q++NAL  +    F
Sbjct: 128 IKIHNITXKKAYELXKEFLQLEKXEVNKEDSKKKQNIYWKLISSKRQLQNALYYL---SF 184

Query: 108 SDDAFAGVPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQV 167
           +  +    PVF + +L ++    +  P+FF  EDL++++          N A    D ++
Sbjct: 185 TKKSELXYPVFYAENLYIQKDGSNIIPLFFDLEDLKEAIEEQK------NKALSKVDYKI 238

Query: 168 AVFEEI 173
            V   +
Sbjct: 239 KVLNXV 244


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,515,467
Number of Sequences: 62578
Number of extensions: 202227
Number of successful extensions: 458
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 4
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)