BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028633
(206 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4J469|TI22L_ARATH Protein TIC 22-like, chloroplastic OS=Arabidopsis thaliana
GN=TIC22L PE=3 SV=1
Length = 313
Score = 321 bits (822), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 156/203 (76%), Positives = 178/203 (87%)
Query: 1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
+SA+AIEERLAGVPVYALSN NEEFVLVSG +GKSLGL+ K+EDAE LL +MKSMDP
Sbjct: 110 LSADAIEERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKEEDAETLLKEMKSMDPR 169
Query: 61 MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQS 120
MRKEGS+VV + L+KVFQLKVNGVAFRLIPESTQVKNAL+E + AG DD F GVPVFQS
Sbjct: 170 MRKEGSKVVALALSKVFQLKVNGVAFRLIPESTQVKNALKERKTAGIDDDDFHGVPVFQS 229
Query: 121 RSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKES 180
+SL+LRS+N SYRPVFFRKEDLEKSL RASS QN+LNPA + GDIQVAVFE+I+KGM+ES
Sbjct: 230 KSLILRSENMSYRPVFFRKEDLEKSLIRASSQQNRLNPALKPGDIQVAVFEDIVKGMRES 289
Query: 181 TTSAWNDVVFIPPGFDVSTNPNQ 203
TTS W+D+VFIPPGF+VST Q
Sbjct: 290 TTSNWDDIVFIPPGFEVSTEQTQ 312
>sp|Q9ZST9|TIC22_PEA Protein TIC 22, chloroplastic OS=Pisum sativum GN=TIC22 PE=1 SV=1
Length = 252
Score = 164 bits (415), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 128/195 (65%), Gaps = 8/195 (4%)
Query: 1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
++ + + LAG VY +SN + EFVL+S A+ KS+GL+CF++EDAEA L Q++S
Sbjct: 53 LTPNHVAKSLAGTSVYTVSNSDNEFVLMSDAEGAKSIGLLCFRQEDAEAFLAQVRSRKKE 112
Query: 61 MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQS 120
R G++VVP+ L++V+ LKV G+AFR +P+ Q+KNAL E+ A + +F GVPVFQS
Sbjct: 113 FRG-GAKVVPITLDQVYMLKVEGIAFRFLPDPVQIKNAL-ELRAA--NRGSFDGVPVFQS 168
Query: 121 RSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKES 180
LV++ +NK Y PV+F KEDLE L + S + + I V FE+++K M+ S
Sbjct: 169 DLLVVKKKNKRYCPVYFSKEDLEYELSKVSRSSKGVGVS---QHIMVGSFEDVLKKMELS 225
Query: 181 -TTSAWNDVVFIPPG 194
+S W D+VFIPPG
Sbjct: 226 EKSSGWEDLVFIPPG 240
>sp|Q9SZB2|TIC22_ARATH Protein TIC 22, chloroplastic OS=Arabidopsis thaliana GN=TIC22 PE=1
SV=1
Length = 268
Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 129/197 (65%), Gaps = 14/197 (7%)
Query: 1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
+S + + LAG V+ +SN N EFVL+S GKS+GL+CF++EDAEA L Q +
Sbjct: 70 LSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLCFRQEDAEAFLAQARLRRRE 129
Query: 61 MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQS 120
+ K ++VVP+ L++V+ LKV G++FR +P+ Q+KNAL E++ +G + + F GVPVFQS
Sbjct: 130 L-KTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNAL-ELKSSG-NKNGFDGVPVFQS 186
Query: 121 RSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAV--FEEIIKGMK 178
LV+R +N+ Y PV+F KED+E+ L +K A R GD Q+ V E++++ M+
Sbjct: 187 ELLVVRKKNRRYCPVYFSKEDIEREL-------SKYTRASR-GDQQIMVGSLEDVLRKME 238
Query: 179 ES-TTSAWNDVVFIPPG 194
S S W DV+FIPPG
Sbjct: 239 MSEKNSGWEDVIFIPPG 255
>sp|O78449|YCF80_GUITH Uncharacterized protein ycf80 OS=Guillardia theta GN=ycf80 PE=3
SV=1
Length = 282
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 36/154 (23%)
Query: 1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGK------------------------S 36
++ + I E L VPVY + N E V+ S +
Sbjct: 95 LAQKHILESLKTVPVYTIVNDLNEIVIASPRDLTNFNSFNWVKRFYNDWFIWEKDEGNVN 154
Query: 37 LGLMCFKKEDAEALLHQMKSMDP-AMRKEGSRVVPVPLNKVFQLKVNG---VAFRLIPES 92
+GL +EDAE LHQ+ DP + G V + L+ ++L + F+LI +
Sbjct: 155 IGLFFMNREDAELYLHQICLKDPRGVENVGVNVKTISLDTFYKLNRLSPPRLQFKLIADL 214
Query: 93 TQVKNALRE--------MEKAGFSDDAFAGVPVF 118
++KN L K + + F G+P+F
Sbjct: 215 QEIKNILNVNSNSRVSFHPKQKYDKNWFKGIPIF 248
>sp|Q47JA6|EFG_DECAR Elongation factor G OS=Dechloromonas aromatica (strain RCB) GN=fusA
PE=3 SV=1
Length = 697
Score = 33.9 bits (76), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 110 DAFAGVPVF-QSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVA 168
D F G +F + S V+ S + Y PV RKE L + L+ ++ + ++ R GDI A
Sbjct: 325 DPFVGQLIFFRVYSGVINSGDTVYNPVKGRKERLGRILQMHANQREEIKEV-RAGDIAAA 383
Query: 169 VFEEIIKGMKESTTS 183
V G+KE+TT
Sbjct: 384 V------GLKEATTG 392
>sp|Q6B952|YCF46_GRATL Uncharacterized AAA domain-containing protein ycf46 OS=Gracilaria
tenuistipitata var. liui GN=ycf46 PE=3 SV=1
Length = 491
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 14/124 (11%)
Query: 88 LIPESTQVKNALREMEKAG-FSDDAFAGVPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSL 146
+I + QV + E+ + G F + F +P + R + + +RP+ +RK D++
Sbjct: 364 VIATANQVLSLPSELLRKGRFDEIFFLNLPSLEEREKIFQIHLMKFRPLSWRKYDIKY-- 421
Query: 147 RRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVV-----FIPPGFDVSTNP 201
+KL F +I+ A+ E + E + D++ F+P F + N
Sbjct: 422 ------LSKLTDQFSGAEIEQAIIEAMYNAFYEKREFSTQDIINAINNFVPLAFTDTCNI 475
Query: 202 NQAQ 205
+ Q
Sbjct: 476 SAIQ 479
>sp|A8FY36|DXR_SHESH 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella
sediminis (strain HAW-EB3) GN=dxr PE=3 SV=1
Length = 395
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 61 MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAG 114
MR+ G+RV+PV + ++ +PES Q E+EKAG S G
Sbjct: 138 MRRSGARVLPVD-------SEHNAIYQALPESLQSNIGYCELEKAGVSHILLTG 184
>sp|B1XSP8|EFG_POLNS Elongation factor G OS=Polynucleobacter necessarius subsp.
necessarius (strain STIR1) GN=fusA PE=3 SV=1
Length = 700
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 110 DAFAGVPVF-QSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVA 168
D F G +F + S V++S + Y P+ +KE + + L+ ++++ ++ F GDI A
Sbjct: 325 DPFVGQLIFFRVYSGVMKSGDTIYNPIKGKKERVGRLLQMHANEREEIKEVF-AGDIAAA 383
Query: 169 VFEEIIKGMKESTTS 183
V G+K++TT
Sbjct: 384 V------GLKDATTG 392
>sp|Q0AJI1|TIG_NITEC Trigger factor OS=Nitrosomonas eutropha (strain C91) GN=tig PE=3
SV=1
Length = 438
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 14/148 (9%)
Query: 40 MCFKKEDAEALLHQ-MKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNA 98
+ +E EA + Q +K + P ++ +G R VP+ V Q + + ++ E Q + +
Sbjct: 17 LSVSREKVEAEVGQRLKRLAPKIKIQGFRPGKVPMKIVAQQYGHQIEHEVLGELLQQQFS 76
Query: 99 LREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLN- 157
E + AGVP F+SR+ + N +R F ++E D N +
Sbjct: 77 ----ESINRENYRIAGVPNFESRNPGTDNSNYEFRATFEIYPNIE------LGDLNSITI 126
Query: 158 --PAFRMGDIQVAVFEEIIKGMKESTTS 183
P ++GD+++ E+++ + + S
Sbjct: 127 NKPVLQIGDVEIQKTLEVLRKQRTNYES 154
>sp|B0V3H4|CS054_DANRE UPF0692 protein C19orf54 homolog OS=Danio rerio GN=si:dkey-233h2.2
PE=2 SV=1
Length = 307
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 16 YALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNK 75
+ + + E FVL AK GKSL ++ E Q+K MDP +G+R V P
Sbjct: 231 WPIDDIEEVFVL---AKQGKSLRYQLWEFESVAQSNKQLKEMDPQRASDGTRYVLPPGG- 286
Query: 76 VFQLKVNGVAFRLIPESTQVKN 97
Q + G L + Q KN
Sbjct: 287 -VQDGLAGQVLLLHTNTEQTKN 307
>sp|Q83ES7|EFG_COXBU Elongation factor G OS=Coxiella burnetii (strain RSA 493 / Nine
Mile phase I) GN=fusA PE=3 SV=1
Length = 699
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 107 FSDDAFAG-VPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDI 165
+ D F G + F+ S +L+S + Y P+ +KE + + L+ S+ + ++ R GDI
Sbjct: 324 IASDPFVGTLTFFRVYSGILKSGDSVYNPIKGKKERIGRLLQMHSNSREEIK-EVRAGDI 382
Query: 166 QVAVFEEIIKGMKESTTS 183
AV G+K TT
Sbjct: 383 AAAV------GLKTVTTG 394
>sp|A9NAM1|EFG_COXBR Elongation factor G OS=Coxiella burnetii (strain RSA 331 /
Henzerling II) GN=fusA PE=3 SV=1
Length = 699
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 107 FSDDAFAG-VPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDI 165
+ D F G + F+ S +L+S + Y P+ +KE + + L+ S+ + ++ R GDI
Sbjct: 324 IASDPFVGTLTFFRVYSGILKSGDSVYNPIKGKKERIGRLLQMHSNSREEIK-EVRAGDI 382
Query: 166 QVAVFEEIIKGMKESTTS 183
AV G+K TT
Sbjct: 383 AAAV------GLKTVTTG 394
>sp|B6J5C9|EFG_COXB1 Elongation factor G OS=Coxiella burnetii (strain CbuK_Q154) GN=fusA
PE=3 SV=1
Length = 699
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 107 FSDDAFAG-VPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDI 165
+ D F G + F+ S +L+S + Y P+ +KE + + L+ S+ + ++ R GDI
Sbjct: 324 IASDPFVGTLTFFRVYSGILKSGDSVYNPIKGKKERIGRLLQMHSNSREEIK-EVRAGDI 382
Query: 166 QVAVFEEIIKGMKESTTS 183
AV G+K TT
Sbjct: 383 AAAV------GLKTVTTG 394
>sp|A9KD34|EFG_COXBN Elongation factor G OS=Coxiella burnetii (strain Dugway 5J108-111)
GN=fusA PE=3 SV=1
Length = 699
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 107 FSDDAFAG-VPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDI 165
+ D F G + F+ S +L+S + Y P+ +KE + + L+ S+ + ++ R GDI
Sbjct: 324 IASDPFVGTLTFFRVYSGILKSGDSVYNPIKGKKERIGRLLQMHSNSREEIK-EVRAGDI 382
Query: 166 QVAVFEEIIKGMKESTTS 183
AV G+K TT
Sbjct: 383 AAAV------GLKTVTTG 394
>sp|B6J266|EFG_COXB2 Elongation factor G OS=Coxiella burnetii (strain CbuG_Q212) GN=fusA
PE=3 SV=1
Length = 699
Score = 30.8 bits (68), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 107 FSDDAFAG-VPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDI 165
+ D F G + F+ S +L+S + Y P+ +KE + + L+ S+ + ++ R GDI
Sbjct: 324 IASDPFVGTLTFFRVYSGILKSGDSVYNPIKGKKERIGRLLQMHSNSREEIK-EVRAGDI 382
Query: 166 QVAVFEEIIKGMKESTTS 183
AV G+K TT
Sbjct: 383 AAAV------GLKTVTTG 394
>sp|Q9NHE5|CAPS_DROME Calcium-dependent secretion activator OS=Drosophila melanogaster
GN=Caps PE=1 SV=2
Length = 1436
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 130 KSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMG-DIQVAVFEEIIKGMKESTTSAWN-- 186
+SY VF + E + K ++ +S Q+ FR + +V EI KE+ ++W
Sbjct: 230 QSYHDVFLKSERVLKMVQSGASSQHDFREVFRNNIEKRVRSLPEIDGLSKETVLTSWMAK 289
Query: 187 -DVVFIPPGFDVSTNPNQAQQ 206
D++ G + S P++ QQ
Sbjct: 290 FDIILKGTGEEDSKRPSRMQQ 310
>sp|Q3BWY7|EFG_XANC5 Elongation factor G OS=Xanthomonas campestris pv. vesicatoria
(strain 85-10) GN=fusA PE=3 SV=1
Length = 705
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 110 DAFAG-VPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVA 168
D F G + F+ S L S ++ Y PV +KE + + L+ S+++ ++ R GDI A
Sbjct: 325 DPFVGSLTFFRVYSGTLNSGDQVYNPVKSKKERVGRILQMHSNNREEIKEV-RAGDIAAA 383
Query: 169 VFEEIIKGMKESTTS 183
V G+K+ TT
Sbjct: 384 V------GLKDVTTG 392
>sp|Q5GWS9|EFG_XANOR Elongation factor G OS=Xanthomonas oryzae pv. oryzae (strain
KACC10331 / KXO85) GN=fusA PE=3 SV=2
Length = 705
Score = 30.4 bits (67), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 110 DAFAG-VPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVA 168
D F G + F+ S L S ++ Y PV +KE + + L+ S+++ ++ R GDI A
Sbjct: 325 DPFVGSLTFFRVYSGTLNSGDQVYNPVKSKKERVGRILQMHSNNREEIKEV-RAGDIAAA 383
Query: 169 VFEEIIKGMKESTTS 183
V G+K+ TT
Sbjct: 384 V------GLKDVTTG 392
>sp|Q2NZY2|EFG_XANOM Elongation factor G OS=Xanthomonas oryzae pv. oryzae (strain MAFF
311018) GN=fusA PE=3 SV=1
Length = 705
Score = 30.4 bits (67), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 110 DAFAG-VPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVA 168
D F G + F+ S L S ++ Y PV +KE + + L+ S+++ ++ R GDI A
Sbjct: 325 DPFVGSLTFFRVYSGTLNSGDQVYNPVKSKKERVGRILQMHSNNREEIKEV-RAGDIAAA 383
Query: 169 VFEEIIKGMKESTTS 183
V G+K+ TT
Sbjct: 384 V------GLKDVTTG 392
>sp|Q8PNS6|EFG_XANAC Elongation factor G OS=Xanthomonas axonopodis pv. citri (strain
306) GN=fusA PE=3 SV=1
Length = 705
Score = 30.4 bits (67), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 110 DAFAG-VPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVA 168
D F G + F+ S L S ++ Y PV +KE + + L+ S+++ ++ R GDI A
Sbjct: 325 DPFVGSLTFFRVYSGTLNSGDQVYNPVKSKKERVGRILQMHSNNREEIKEV-RAGDIAAA 383
Query: 169 VFEEIIKGMKESTTS 183
V G+K+ TT
Sbjct: 384 V------GLKDVTTG 392
>sp|Q8PC52|EFG_XANCP Elongation factor G OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=fusA PE=3
SV=1
Length = 705
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 110 DAFAG-VPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVA 168
D F G + F+ S L S ++ Y PV +KE + + L+ S+++ ++ R GDI A
Sbjct: 325 DPFVGSLTFFRVYSGTLNSGDQVYNPVKSKKERVGRILQMHSNNREEIKEV-RAGDIAAA 383
Query: 169 VFEEIIKGMKESTTS 183
V G+K+ TT
Sbjct: 384 V------GLKDVTTG 392
>sp|B0RU85|EFG_XANCB Elongation factor G OS=Xanthomonas campestris pv. campestris
(strain B100) GN=fusA PE=3 SV=1
Length = 705
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 110 DAFAG-VPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVA 168
D F G + F+ S L S ++ Y PV +KE + + L+ S+++ ++ R GDI A
Sbjct: 325 DPFVGSLTFFRVYSGTLNSGDQVYNPVKSKKERVGRILQMHSNNREEIKEV-RAGDIAAA 383
Query: 169 VFEEIIKGMKESTTS 183
V G+K+ TT
Sbjct: 384 V------GLKDVTTG 392
>sp|Q4URD6|EFG_XANC8 Elongation factor G OS=Xanthomonas campestris pv. campestris
(strain 8004) GN=fusA PE=3 SV=1
Length = 705
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 110 DAFAG-VPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVA 168
D F G + F+ S L S ++ Y PV +KE + + L+ S+++ ++ R GDI A
Sbjct: 325 DPFVGSLTFFRVYSGTLNSGDQVYNPVKSKKERVGRILQMHSNNREEIKEV-RAGDIAAA 383
Query: 169 VFEEIIKGMKESTTS 183
V G+K+ TT
Sbjct: 384 V------GLKDVTTG 392
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,428,533
Number of Sequences: 539616
Number of extensions: 2700210
Number of successful extensions: 7472
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 7460
Number of HSP's gapped (non-prelim): 29
length of query: 206
length of database: 191,569,459
effective HSP length: 112
effective length of query: 94
effective length of database: 131,132,467
effective search space: 12326451898
effective search space used: 12326451898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)