Query 028633
Match_columns 206
No_of_seqs 132 out of 142
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 14:34:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04278 Tic22: Tic22-like fam 100.0 4.9E-59 1.1E-63 406.1 16.9 201 1-205 63-274 (274)
2 TIGR00995 3a0901s06TIC22 chlor 100.0 8.2E-57 1.8E-61 388.2 21.0 198 1-205 70-269 (270)
3 PF04278 Tic22: Tic22-like fam 99.2 5.3E-11 1.1E-15 104.3 8.0 90 8-101 178-272 (274)
4 TIGR00995 3a0901s06TIC22 chlor 99.0 2.2E-09 4.8E-14 93.5 9.9 85 11-103 178-269 (270)
5 PF11360 DUF3110: Protein of u 93.9 0.52 1.1E-05 34.5 8.0 73 15-92 1-77 (86)
6 PF11572 DUF3234: Protein of u 87.8 3.1 6.6E-05 31.1 6.7 56 13-77 7-65 (103)
7 PF07179 SseB: SseB protein N- 81.9 6.3 0.00014 29.1 6.4 58 123-196 54-112 (124)
8 COG1225 Bcp Peroxiredoxin [Pos 80.1 4.7 0.0001 32.7 5.4 79 12-95 9-98 (157)
9 PF11042 DUF2750: Protein of u 76.8 16 0.00035 27.1 7.2 73 10-92 10-87 (104)
10 PF00578 AhpC-TSA: AhpC/TSA fa 75.0 7.1 0.00015 28.6 4.8 79 12-91 4-89 (124)
11 cd02970 PRX_like2 Peroxiredoxi 70.9 4.7 0.0001 30.5 3.1 80 13-93 2-89 (149)
12 cd02971 PRX_family Peroxiredox 59.9 11 0.00024 28.2 3.2 77 13-94 2-90 (140)
13 PF10882 bPH_5: Bacterial PH d 56.1 22 0.00047 25.7 4.1 38 15-57 62-99 (100)
14 COG3691 Uncharacterized protei 56.1 34 0.00073 25.6 5.0 47 33-79 30-78 (98)
15 PRK09437 bcp thioredoxin-depen 55.8 14 0.0003 28.6 3.2 77 12-93 9-96 (154)
16 COG1999 Uncharacterized protei 54.5 60 0.0013 27.1 7.1 88 15-103 49-152 (207)
17 PRK00522 tpx lipid hydroperoxi 52.1 1.1E+02 0.0024 24.3 8.0 74 12-92 23-108 (167)
18 PF02829 3H: 3H domain; Inter 48.8 98 0.0021 23.1 6.7 51 42-107 44-96 (98)
19 cd06578 HemD Uroporphyrinogen- 46.7 1.3E+02 0.0027 24.3 7.8 67 37-104 51-117 (239)
20 cd03017 PRX_BCP Peroxiredoxin 46.6 19 0.0004 27.0 2.6 77 12-93 2-89 (140)
21 cd03016 PRX_1cys Peroxiredoxin 42.7 1.9E+02 0.0041 23.7 9.6 77 12-93 4-97 (203)
22 COG4669 EscJ Type III secretor 41.8 30 0.00066 30.1 3.3 93 42-149 28-121 (246)
23 PF02630 SCO1-SenC: SCO1/SenC; 40.6 73 0.0016 25.6 5.3 64 11-77 30-100 (174)
24 cd03018 PRX_AhpE_like Peroxire 40.0 48 0.001 25.0 4.0 81 11-92 5-93 (149)
25 PRK11611 enhanced serine sensi 39.5 25 0.00055 30.6 2.5 22 127-148 50-71 (246)
26 PF00837 T4_deiodinase: Iodoth 38.1 2.3E+02 0.005 24.6 8.2 118 12-149 81-236 (237)
27 PF11943 DUF3460: Protein of u 36.7 27 0.00059 23.9 1.8 19 44-62 4-22 (60)
28 TIGR00854 pts-sorbose PTS syst 36.7 70 0.0015 25.5 4.5 16 88-103 119-134 (151)
29 cd02968 SCO SCO (an acronym fo 35.3 53 0.0011 24.5 3.5 80 13-93 2-95 (142)
30 PF07179 SseB: SseB protein N- 35.1 1.7E+02 0.0038 21.1 8.1 65 3-79 16-95 (124)
31 PF07411 DUF1508: Domain of un 35.1 1.2E+02 0.0025 19.5 4.6 39 13-60 5-43 (49)
32 KOG0855 Alkyl hydroperoxide re 34.0 95 0.0021 25.9 4.9 98 11-117 67-175 (211)
33 cd02960 AGR Anterior Gradient 33.5 43 0.00092 26.3 2.7 45 11-57 78-122 (130)
34 smart00461 WH1 WASP homology r 33.3 58 0.0013 24.3 3.4 25 33-57 81-105 (106)
35 PF12164 SporV_AA: Stage V spo 32.6 37 0.0008 25.0 2.2 25 5-29 34-58 (93)
36 PF11360 DUF3110: Protein of u 32.1 2E+02 0.0043 20.9 7.9 61 124-194 17-77 (86)
37 cd03013 PRX5_like Peroxiredoxi 31.8 1.1E+02 0.0025 23.9 5.0 83 12-100 4-105 (155)
38 PRK11633 cell division protein 31.7 75 0.0016 27.3 4.2 46 4-57 164-213 (226)
39 cd00837 EVH1 EVH1 (Enabled, Va 31.1 1.6E+02 0.0035 21.7 5.5 23 34-56 80-102 (104)
40 PF13098 Thioredoxin_2: Thiore 31.0 90 0.0019 22.3 4.0 23 4-26 72-96 (112)
41 PF12368 DUF3650: Protein of u 30.3 33 0.00072 19.9 1.2 13 1-13 16-28 (28)
42 PF07429 Glyco_transf_56: 4-al 29.5 65 0.0014 29.7 3.6 40 113-152 288-328 (360)
43 cd02951 SoxW SoxW family; SoxW 28.4 2.2E+02 0.0048 20.9 5.9 46 3-57 73-121 (125)
44 cd00340 GSH_Peroxidase Glutath 28.3 87 0.0019 24.2 3.8 58 12-74 1-63 (152)
45 TIGR02544 III_secr_YscJ type I 28.1 2.3E+02 0.005 23.5 6.4 58 42-114 26-83 (193)
46 cd00001 PTS_IIB_man PTS_IIB, P 27.0 1.5E+02 0.0032 23.6 4.9 23 88-119 118-140 (151)
47 PRK03147 thiol-disulfide oxido 26.7 1.5E+02 0.0032 22.9 4.9 64 11-75 39-104 (173)
48 cd02122 PA_GRAIL_like PA _GRAI 26.7 2.6E+02 0.0056 21.8 6.2 49 8-56 81-130 (138)
49 TIGR00743 conserved hypothetic 26.4 2.1E+02 0.0045 21.4 5.2 54 35-88 29-92 (95)
50 PF13905 Thioredoxin_8: Thiore 26.3 1.4E+02 0.003 20.6 4.3 40 35-76 2-46 (95)
51 COG0157 NadC Nicotinate-nucleo 25.9 77 0.0017 28.2 3.3 38 141-182 173-210 (280)
52 PRK09756 PTS system N-acetylga 25.7 3.5E+02 0.0076 21.7 7.8 72 65-152 58-139 (158)
53 PF03243 MerB: Alkylmercury ly 25.3 63 0.0014 24.9 2.4 32 39-79 88-119 (127)
54 TIGR03137 AhpC peroxiredoxin. 24.7 3.3E+02 0.0071 21.9 6.7 76 12-92 7-100 (187)
55 PF12068 DUF3548: Domain of un 24.4 94 0.002 26.5 3.5 35 23-57 132-166 (213)
56 PF00568 WH1: WH1 domain; Int 24.0 2.5E+02 0.0053 20.8 5.4 24 34-57 87-110 (111)
57 PF11305 DUF3107: Protein of u 23.6 2.5E+02 0.0053 20.0 4.9 27 5-31 28-55 (74)
58 COG3603 Uncharacterized conser 22.6 84 0.0018 24.6 2.6 20 11-30 90-109 (128)
59 cd01207 Ena-Vasp Enabled-VASP- 22.6 1.9E+02 0.0042 22.0 4.6 25 33-57 82-106 (111)
60 PRK13599 putative peroxiredoxi 21.8 1.8E+02 0.0038 24.4 4.7 76 12-92 7-99 (215)
61 PRK12338 hypothetical protein; 21.4 3.5E+02 0.0075 24.5 6.7 60 42-111 254-315 (319)
62 PTZ00256 glutathione peroxidas 21.2 2.5E+02 0.0053 22.5 5.3 66 6-75 13-84 (183)
63 PF12483 GIDE: E3 Ubiquitin li 20.9 1.4E+02 0.003 23.5 3.7 43 12-57 96-142 (160)
64 PF10787 YfmQ: Uncharacterised 20.7 1.7E+02 0.0037 23.6 4.0 36 22-57 91-126 (149)
65 COG2984 ABC-type uncharacteriz 20.5 2E+02 0.0043 26.2 4.9 101 33-143 158-266 (322)
No 1
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=100.00 E-value=4.9e-59 Score=406.11 Aligned_cols=201 Identities=43% Similarity=0.720 Sum_probs=156.3
Q ss_pred CCHHHHHHhcCCCcEEEEEcCCCCeEEEeccCC-CceEEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh
Q 028633 1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKT-GKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL 79 (206)
Q Consensus 1 L~~~~I~ekL~~VPVF~vtn~~g~~~l~~~~~~-~~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l 79 (206)
||+++|++||++||||+|||++|+|++++.+++ ++++++||||++||++||+++++++|+++++ +||++|+|++||++
T Consensus 63 L~~~~V~~kL~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~s~~dA~~~L~~lk~~~p~~~~~-~kV~pvsL~~vY~l 141 (274)
T PF04278_consen 63 LPEEEVEEKLAGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFFSQQDAEAFLAQLKKSNPELASG-AKVVPVSLGKVYQL 141 (274)
T ss_dssp --HHHHHHHHTTSEEEEEE-TT--B-----TTS--SEEEEEES-HHHHHHHHHHHHH-SSHHHTT--EEEEEEHHHHHHH
T ss_pred CCHHHHHHHhcCceEEEEECCCCCEEEeccCCCCCceEEEEEecHHHHHHHHHHHhhhCccccCc-eEEEEecHHHHHHH
Confidence 789999999999999999999999999998874 7999999999999999999999999999888 99999999999999
Q ss_pred ------ccCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecc----eeEeeCCeeEeeeeecHHHHHHHHHHH
Q 028633 80 ------KVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRS----LVLRSQNKSYRPVFFRKEDLEKSLRRA 149 (206)
Q Consensus 80 ------~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~----Lti~~~~~~~~PlFF~kedl~~~l~~~ 149 (206)
+.+++.|+|+|+++||++|+++++++|+.+++|+|||||++++ ||++++|++++|+||+||||+++|+++
T Consensus 142 ~~~~~~k~~~~~F~~vP~~~qV~~A~~ll~~~g~~~~~f~GVPvF~~~~~~~~Lti~~~~~~~iPlFF~kedL~~~l~k~ 221 (274)
T PF04278_consen 142 AQENKKKPEGLQFRFVPDPKQVEAALELLKKQGQKVKQFQGVPVFYAEGGKGYLTIKQDNKRIIPLFFDKEDLQAALEKA 221 (274)
T ss_dssp HHHTTT-TT-EEEEEE--HHHHHHHHHHHHTTT---S---S-EEEEEESST-B-EETTTTEEEEEEESSHHHHHHHHHHH
T ss_pred HHHhhcCCcCceEEEcCCHHHHHHHHHHHHhcCCCcccCCCeEEEEEcCCCceEEEeeCCeEEEEEEecHHHHHHHHHHH
Confidence 5789999999999999999999999999888999999999999 999999999999999999999999999
Q ss_pred hhcccccCCCCccCcEEEEeHHHHHHhhhcCCCCCCceEEEecCcccccCCccccc
Q 028633 150 SSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFDVSTNPNQAQ 205 (206)
Q Consensus 150 ~~~~~~~~p~~~~~~I~V~~Le~vi~~m~~~~~~~~~~i~fiPp~~s~~~~~~~~~ 205 (206)
+++++++++ +++|+|++|+++|++|++++|++|++++||||++|++.+.+.+|
T Consensus 222 ~kq~p~~~~---~~~I~V~~Le~vI~~m~~~~d~~~~~i~fiP~~es~~~i~~~~~ 274 (274)
T PF04278_consen 222 KKQQPDLAK---EPKIQVVSLEDVIKTMEESDDSDLKKIVFIPPGESLEFIQSLKQ 274 (274)
T ss_dssp TTT-TT--------EEEEEEHHHHHHHHHH---GGGGGEEEE--HHHHHHHHTS--
T ss_pred HHhCCCCcC---CceEEEEcHHHHHHHHhcCCCCCcceEEEECCHHHHHHHHHhcC
Confidence 999865443 68899999999999999999999999999999999999866544
No 2
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=100.00 E-value=8.2e-57 Score=388.23 Aligned_cols=198 Identities=35% Similarity=0.631 Sum_probs=180.5
Q ss_pred CCHHHHHHhcCCCcEEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhc
Q 028633 1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLK 80 (206)
Q Consensus 1 L~~~~I~ekL~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~ 80 (206)
||++||+++|++||||+|+|++|+||+++.+++++++|+||++++||++||+++|++||+++++ +||++++||+||+++
T Consensus 70 L~e~eV~ekL~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~s~qedA~afL~~lk~~~p~l~~~-~kV~pvsL~~vYkl~ 148 (270)
T TIGR00995 70 LPPEEVAKILAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCFRQEDAEAFLAQLRKRKPEVGSQ-AKVVPITLDQVYKLK 148 (270)
T ss_pred CCHHHHHHHhcCCceEEEEcCCCCeEEEECCCCCceEEEEECCHHHHHHHHHHHHhhCccccCC-ceEEEEEHHHHHHHh
Confidence 7999999999999999999999999999999888999999888888999999999999999988 999999999999999
Q ss_pred cCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecceeEeeCCeeEeeeeecHHHHHHHHHHHhhcccccCCCC
Q 028633 81 VNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAF 160 (206)
Q Consensus 81 ~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~Lti~~~~~~~~PlFF~kedl~~~l~~~~~~~~~~~p~~ 160 (206)
.+++.|+|+|+++||++|++++ ++++ ++++|||||++++||++++|++|||+||+||||+++|+++++++|+++.
T Consensus 149 ~e~l~F~fiP~~~qV~~A~~ll-~~~~--~~~~GVPlF~~~~Lti~~~n~~~iP~FF~Kedlq~~L~~~kkq~p~l~~-- 223 (270)
T TIGR00995 149 VEGIGFRFLPDPAQIKNALELP-AANS--EYFDGVPVFQSGLLVVQKKNERYCPVYFSKEDIEQELSKFKRESPGMAD-- 223 (270)
T ss_pred hcCccEEEeCCHHHHHHHHHHH-hcCc--cCCCCccEEeecceEEEeCCeEEEeeEeeHHHHHHHHHHHhHhCcCcCC--
Confidence 8899999999999999999999 3344 5678999999999999999999999999999999999999999854333
Q ss_pred ccCcEEEEeHHHHHHhhhcC--CCCCCceEEEecCcccccCCccccc
Q 028633 161 RMGDIQVAVFEEIIKGMKES--TTSAWNDVVFIPPGFDVSTNPNQAQ 205 (206)
Q Consensus 161 ~~~~I~V~~Le~vi~~m~~~--~~~~~~~i~fiPp~~s~~~~~~~~~ 205 (206)
+.+|+|++||+||++|+++ +|.+.++|.|+|+.++++..++.++
T Consensus 224 -~~~I~V~~Le~vi~~m~~~~~~~~~~~~I~l~Ps~e~~~~iq~~~~ 269 (270)
T TIGR00995 224 -SQVIMVGSMEDVLSKMETSEKDSGWEDQIFIPPGQEAIQHMQSLIA 269 (270)
T ss_pred -CccEEEEeHHHHHHHHhccCCCCcccceEEECCCHHHHHHHHHHhc
Confidence 6889999999999999985 7778888888888888876655443
No 3
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=99.19 E-value=5.3e-11 Score=104.30 Aligned_cols=90 Identities=23% Similarity=0.343 Sum_probs=64.7
Q ss_pred HhcCCCcEEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh--ccCC--
Q 028633 8 ERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL--KVNG-- 83 (206)
Q Consensus 8 ekL~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l--~~~~-- 83 (206)
+.+.|||||.+.++. .+++... +++.+.+|||+++|+++.++++++++|+++.. .+|.+++|+.+++. .+++
T Consensus 178 ~~f~GVPvF~~~~~~--~~Lti~~-~~~~~iPlFF~kedL~~~l~k~~kq~p~~~~~-~~I~V~~Le~vI~~m~~~~d~~ 253 (274)
T PF04278_consen 178 KQFQGVPVFYAEGGK--GYLTIKQ-DNKRIIPLFFDKEDLQAALEKAKKQQPDLAKE-PKIQVVSLEDVIKTMEESDDSD 253 (274)
T ss_dssp S---S-EEEEEESST---B-EETT-TTEEEEEEESSHHHHHHHHHHHTTT-TT------EEEEEEHHHHHHHHHH---GG
T ss_pred ccCCCeEEEEEcCCC--ceEEEee-CCeEEEEEEecHHHHHHHHHHHHHhCCCCcCC-ceEEEEcHHHHHHHHhcCCCCC
Confidence 557899999999988 5555544 56888889999999999999999999999988 99999999999976 2222
Q ss_pred -eeEEEecCHHHHHHHHHH
Q 028633 84 -VAFRLIPESTQVKNALRE 101 (206)
Q Consensus 84 -~~f~~vP~~~qv~~A~~l 101 (206)
-.+.|||+.+.+++++++
T Consensus 254 ~~~i~fiP~~es~~~i~~~ 272 (274)
T PF04278_consen 254 LKKIVFIPPGESLEFIQSL 272 (274)
T ss_dssp GGGEEEE--HHHHHHHHTS
T ss_pred cceEEEECCHHHHHHHHHh
Confidence 689999999999999765
No 4
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=99.00 E-value=2.2e-09 Score=93.53 Aligned_cols=85 Identities=19% Similarity=0.328 Sum_probs=71.6
Q ss_pred CCCcEEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh-cc---CC---
Q 028633 11 AGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL-KV---NG--- 83 (206)
Q Consensus 11 ~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l-~~---~~--- 83 (206)
.|||||.+ +.+.+. . +++.+.+|||+++|+++.|+++|+++|+++.+ .+|.+++|+.+.+. .. ++
T Consensus 178 ~GVPlF~~-----~~Lti~-~-~n~~~iP~FF~Kedlq~~L~~~kkq~p~l~~~-~~I~V~~Le~vi~~m~~~~~~~~~~ 249 (270)
T TIGR00995 178 DGVPVFQS-----GLLVVQ-K-KNERYCPVYFSKEDIEQELSKFKRESPGMADS-QVIMVGSMEDVLSKMETSEKDSGWE 249 (270)
T ss_pred CCccEEee-----cceEEE-e-CCeEEEeeEeeHHHHHHHHHHHhHhCcCcCCC-ccEEEEeHHHHHHHHhccCCCCccc
Confidence 58999999 344443 3 56788889999999999999999999999999 99999999999976 22 22
Q ss_pred eeEEEecCHHHHHHHHHHHH
Q 028633 84 VAFRLIPESTQVKNALREME 103 (206)
Q Consensus 84 ~~f~~vP~~~qv~~A~~l~~ 103 (206)
-.+.|+|+.+.+++++++.+
T Consensus 250 ~~I~l~Ps~e~~~~iq~~~~ 269 (270)
T TIGR00995 250 DQIFIPPGQEAIQHMQSLIA 269 (270)
T ss_pred ceEEECCCHHHHHHHHHHhc
Confidence 67889999999999998753
No 5
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=93.93 E-value=0.52 Score=34.54 Aligned_cols=73 Identities=18% Similarity=0.284 Sum_probs=51.1
Q ss_pred EEEEE---cCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh-ccCCeeEEEec
Q 028633 15 VYALS---NCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL-KVNGVAFRLIP 90 (206)
Q Consensus 15 VF~vt---n~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l-~~~~~~f~~vP 90 (206)
||+++ +.+++++-+... +++.+.++|=+.+||+.|..-|..+.-.. ..|..+..+.+..+ ++.|..+++||
T Consensus 1 v~VL~f~~~~~~eGI~si~~-~~~~~Vl~FE~edDA~RYa~lLEAqd~~~----p~Ve~id~~~i~~fC~~~gy~~~iv~ 75 (86)
T PF11360_consen 1 VYVLLFNAGTETEGIYSIQN-KDRNVVLMFEDEDDAERYAGLLEAQDFPD----PTVEEIDPEEIEEFCRSAGYEYEIVP 75 (86)
T ss_pred CEEEEecCCCCCCcEEEEEe-CCCCEEEEEccHHHHHHHHHHHHhcCCCC----CCeEEECHHHHHHHHHHCCceEEEEC
Confidence 56666 334444433323 23556667789999999999997654322 46999999999888 67889999998
Q ss_pred CH
Q 028633 91 ES 92 (206)
Q Consensus 91 ~~ 92 (206)
.-
T Consensus 76 ~g 77 (86)
T PF11360_consen 76 PG 77 (86)
T ss_pred CC
Confidence 64
No 6
>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function. Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.
Probab=87.80 E-value=3.1 Score=31.07 Aligned_cols=56 Identities=29% Similarity=0.482 Sum_probs=42.7
Q ss_pred CcEEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEe---echhhh
Q 028633 13 VPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPV---PLNKVF 77 (206)
Q Consensus 13 VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v---~L~~vy 77 (206)
=|=|++.+.-|+-++.... |..+.....|.++|++|+++ +|.. |.+|.++ .|-.+|
T Consensus 7 g~WYVLe~~pGEHLvleal--gqrls~iWtS~~~A~~F~~~----~p~~---GM~V~~Le~~aLKeaf 65 (103)
T PF11572_consen 7 GTWYVLEDEPGEHLVLEAL--GQRLSGIWTSRELAQAFLAR----HPEL---GMRVSPLESWALKEAF 65 (103)
T ss_dssp SSEEEEESSTT-BEEEEET--TEEEEEEBSSHHHHHHHHHT----STSS-----EEEEE-SHHHHHHH
T ss_pred cceEEecCCCCceeeHHHH--hhhHHhheecHHHHHHHHHh----Cccc---CcEeecchhHHHHHHH
Confidence 4779999999999988875 45566677999999999987 7886 5999998 455555
No 7
>PF07179 SseB: SseB protein N-terminal domain; InterPro: IPR009839 This family consists of several SseB proteins, which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli [] and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon [].
Probab=81.95 E-value=6.3 Score=29.11 Aligned_cols=58 Identities=29% Similarity=0.403 Sum_probs=41.4
Q ss_pred eeEe-eCCeeEeeeeecHHHHHHHHHHHhhcccccCCCCccCcEEEEeHHHHHHhhhcCCCCCCceEEEecCccc
Q 028633 123 LVLR-SQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFD 196 (206)
Q Consensus 123 Lti~-~~~~~~~PlFF~kedl~~~l~~~~~~~~~~~p~~~~~~I~V~~Le~vi~~m~~~~~~~~~~i~fiPp~~s 196 (206)
+++. .+|++++|+|.+.+.+.+... . ...+.++++.++++.+.. +. ..-|++=|-+.+
T Consensus 54 ~~~~~~dg~~~lpvFTs~e~l~~~~~----~---------~~~~~~~~~~~l~~~~~~--~~-~~giviNP~~~~ 112 (124)
T PF07179_consen 54 LTLEDPDGERYLPVFTSWEELEKWYP----D---------ERPIIVVPFEDLLEMLLN--NE-GDGIVINPGTPS 112 (124)
T ss_pred EEEEcCCCCEEEEEECCHHHHHhhhc----c---------cCceecccHHHHHHHhhc--CC-CcEEEEECCCCc
Confidence 4444 778999999999999998865 1 233788999999999981 11 245666565553
No 8
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=80.09 E-value=4.7 Score=32.74 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=60.0
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhc----
Q 028633 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLK---- 80 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~---- 80 (206)
..|=|.+.|.+|+.+-.++-.|. .+-+||+ +-.+|.+|-+.+.+ ..+-|+.|.-||-|.+..++
T Consensus 9 ~aPdF~Lp~~~g~~v~Lsd~~Gk-~VVLyFYPk~~TpgCT~Ea~~Frd~~~e----f~~~~a~V~GIS~Ds~~~~~~F~~ 83 (157)
T COG1225 9 KAPDFELPDQDGETVSLSDLRGK-PVVLYFYPKDFTPGCTTEACDFRDLLEE----FEKLGAVVLGISPDSPKSHKKFAE 83 (157)
T ss_pred cCCCeEeecCCCCEEehHHhcCC-cEEEEECCCCCCCcchHHHHHHHHHHHH----HHhCCCEEEEEeCCCHHHHHHHHH
Confidence 47999999999999877777654 5555555 55678888777633 33336999999999999984
Q ss_pred cCCeeEEEecCHHHH
Q 028633 81 VNGVAFRLIPESTQV 95 (206)
Q Consensus 81 ~~~~~f~~vP~~~qv 95 (206)
..++.|.|..|...-
T Consensus 84 k~~L~f~LLSD~~~~ 98 (157)
T COG1225 84 KHGLTFPLLSDEDGE 98 (157)
T ss_pred HhCCCceeeECCcHH
Confidence 578999999998543
No 9
>PF11042 DUF2750: Protein of unknown function (DUF2750); InterPro: IPR021284 This family is conserved in Proteobacteria. The function is not known.
Probab=76.77 E-value=16 Score=27.08 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=49.7
Q ss_pred cCCCcEEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhh-----hccCCe
Q 028633 10 LAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQ-----LKVNGV 84 (206)
Q Consensus 10 L~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~-----l~~~~~ 84 (206)
...==||++.+.+| .++.... ++..+-+|+=+++-|++....- .+ +.++..++|+...+ |..+++
T Consensus 10 ~~~e~vw~L~~~~g-~~~~~~~-~~~~~~p~W~~~~~A~~~~~~e-------w~-~~~~~~I~L~~Fle~wl~~L~~d~~ 79 (104)
T PF11042_consen 10 ADSEEVWGLKDEDG-WVLCDSD-EGEDVLPFWPSKEFAEACATDE-------WA-DYKPKEISLDEFLEEWLPGLQEDGV 79 (104)
T ss_pred HhCCEEEEEEcCCc-EEEeecC-CCcEEEEeCCCHHHHHHHHhcc-------cc-cCeEEEEEHHHHHHHHhHhHHHCCC
Confidence 34455899999999 5555544 4555566777899999876652 22 38999999999976 355555
Q ss_pred eEEEecCH
Q 028633 85 AFRLIPES 92 (206)
Q Consensus 85 ~f~~vP~~ 92 (206)
..-+-|+.
T Consensus 80 ~vgv~~~~ 87 (104)
T PF11042_consen 80 LVGVFPNP 87 (104)
T ss_pred EEEEecCC
Confidence 55555543
No 10
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=75.03 E-value=7.1 Score=28.59 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=51.4
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEecH---HHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhc----cCCe
Q 028633 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK---EDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLK----VNGV 84 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~---~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~----~~~~ 84 (206)
.+|-|.++|.+|..+-.+.-. ++.+-++|++- ......+.++.+...+....|++|..|+.+...+++ ..++
T Consensus 4 ~~P~f~l~~~~g~~~~l~~l~-gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~ 82 (124)
T PF00578_consen 4 KAPDFTLTDSDGKTVSLSDLK-GKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGL 82 (124)
T ss_dssp BGGCEEEETTTSEEEEGGGGT-TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTC
T ss_pred CCCCcEeECCCCCEEEHHHHC-CCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhcc
Confidence 479999999999998777764 45555555544 334444444444433434336999999988887552 3456
Q ss_pred eEEEecC
Q 028633 85 AFRLIPE 91 (206)
Q Consensus 85 ~f~~vP~ 91 (206)
.|.++-+
T Consensus 83 ~~~~~~D 89 (124)
T PF00578_consen 83 PFPVLSD 89 (124)
T ss_dssp SSEEEEE
T ss_pred ccccccC
Confidence 6666666
No 11
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=70.95 E-value=4.7 Score=30.52 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=46.4
Q ss_pred CcEEEEEcCCCCeEEEeccCC-CceEEEEEe---cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh----ccCCe
Q 028633 13 VPVYALSNCNEEFVLVSGAKT-GKSLGLMCF---KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KVNGV 84 (206)
Q Consensus 13 VPVF~vtn~~g~~~l~~~~~~-~~~v~~fF~---~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l----~~~~~ 84 (206)
.|-|++++.+|+.+-.+...+ +..+.+||- ++- ....+..+.+...+....|++|..|+.+....+ +..++
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~-C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~ 80 (149)
T cd02970 2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPF-CREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL 80 (149)
T ss_pred CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChh-HHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC
Confidence 588999999998876654322 344444431 221 223333333333343333589999988876554 24556
Q ss_pred eEEEecCHH
Q 028633 85 AFRLIPEST 93 (206)
Q Consensus 85 ~f~~vP~~~ 93 (206)
.|.++-|+.
T Consensus 81 ~~p~~~D~~ 89 (149)
T cd02970 81 PFPVYADPD 89 (149)
T ss_pred CCeEEECCc
Confidence 677777653
No 12
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=59.89 E-value=11 Score=28.22 Aligned_cols=77 Identities=22% Similarity=0.339 Sum_probs=48.0
Q ss_pred CcEEEEEcCCCCeEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh----cc
Q 028633 13 VPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KV 81 (206)
Q Consensus 13 VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l----~~ 81 (206)
+|-|.+.|.+|..+-.+.-. ++.+.++|+ +..++..+.+-. ..+...|+.|..|+.+..-.+ +.
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~-gk~~ll~f~~~~~c~~C~~~~~~l~~~~----~~~~~~~~~~i~is~d~~~~~~~~~~~ 76 (140)
T cd02971 2 APDFTLPATDGGEVSLSDFK-GKWVVLFFYPKDFTPVCTTELCAFRDLA----EEFAKGGAEVLGVSVDSPFSHKAWAEK 76 (140)
T ss_pred CCCceeccCCCcEEehHHhC-CCeEEEEEeCCCCCCcCHHHHHHHHHHH----HHHHHCCCEEEEEeCCCHHHHHHHHhc
Confidence 58899999999988777654 444444444 344443333322 222222589999998876554 23
Q ss_pred C-CeeEEEecCHHH
Q 028633 82 N-GVAFRLIPESTQ 94 (206)
Q Consensus 82 ~-~~~f~~vP~~~q 94 (206)
. +..|.++-|...
T Consensus 77 ~~~~~~~~l~D~~~ 90 (140)
T cd02971 77 EGGLNFPLLSDPDG 90 (140)
T ss_pred ccCCCceEEECCCh
Confidence 3 677888887654
No 13
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=56.12 E-value=22 Score=25.70 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=25.4
Q ss_pred EEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhc
Q 028633 15 VYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSM 57 (206)
Q Consensus 15 VF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~ 57 (206)
+++.++.....+++...+ + .+.+|++|.+.|++.++++
T Consensus 62 ~~~y~t~~~~~i~I~t~~--~---~y~isp~~~~~fi~~l~~r 99 (100)
T PF10882_consen 62 VRLYATRNKNVILIKTKD--K---TYVISPEDPEEFIEALKKR 99 (100)
T ss_pred EEEEEECCCCEEEEEECC--c---eEEEcCCCHHHHHHHHHhc
Confidence 444444455566666432 2 3457999999999999875
No 14
>COG3691 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.09 E-value=34 Score=25.60 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=30.2
Q ss_pred CCceEEEEEecHHHHHHHHHHHHhcCccccCC--CeEEEEeechhhhhh
Q 028633 33 TGKSLGLMCFKKEDAEALLHQMKSMDPAMRKE--GSRVVPVPLNKVFQL 79 (206)
Q Consensus 33 ~~~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~--~~kV~~v~L~~vy~l 79 (206)
-...+..||=++.+|+++|+.+.+.-...-+. .+.-...+++..++|
T Consensus 30 ct~~~s~~~as~a~ae~~La~lt~kAr~veSepc~I~~ei~~vedgv~L 78 (98)
T COG3691 30 CTAEYSRFFATRAEAEEALAALTEKARAVESEPCEIEYEITDVEDGVEL 78 (98)
T ss_pred ceEEEEEEecCHHHHHHHHHHHHHHHHhhccCcceeeeeeEeccCcEEE
Confidence 34568888889999999999998654333331 133334455555555
No 15
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=55.77 E-value=14 Score=28.62 Aligned_cols=77 Identities=17% Similarity=0.248 Sum_probs=47.9
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh----c
Q 028633 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----K 80 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l----~ 80 (206)
..|-|.++|.+|+.+-...-.| +.+-++|+ +......+ +++. .+++..|++|..|+.+....+ +
T Consensus 9 ~~p~f~l~~~~G~~~~l~~~~g-k~~ll~f~~~~~~p~C~~~~~~l-~~~~---~~~~~~~v~vi~Is~d~~~~~~~~~~ 83 (154)
T PRK09437 9 IAPKFSLPDQDGEQVSLTDFQG-QRVLVYFYPKAMTPGCTVQACGL-RDNM---DELKKAGVVVLGISTDKPEKLSRFAE 83 (154)
T ss_pred cCCCcEeeCCCCCEEeHHHhCC-CCEEEEEECCCCCCchHHHHHHH-HHHH---HHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 4788999999999876665444 44444443 34433333 2222 223333589999999877665 3
Q ss_pred cCCeeEEEecCHH
Q 028633 81 VNGVAFRLIPEST 93 (206)
Q Consensus 81 ~~~~~f~~vP~~~ 93 (206)
..++.|.++-+..
T Consensus 84 ~~~~~~~~l~D~~ 96 (154)
T PRK09437 84 KELLNFTLLSDED 96 (154)
T ss_pred HhCCCCeEEECCC
Confidence 4567888887653
No 16
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=54.55 E-value=60 Score=27.15 Aligned_cols=88 Identities=13% Similarity=0.119 Sum_probs=49.6
Q ss_pred EEEEEcCCCCeEEEeccCCCceEEEEEe------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh----c---c
Q 028633 15 VYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----K---V 81 (206)
Q Consensus 15 VF~vtn~~g~~~l~~~~~~~~~v~~fF~------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l----~---~ 81 (206)
-|.++|.+|+++......|..++-.|.| ++..-..+.+-+++-....+. ++++..|++|=-.-. + .
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~-~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGD-DVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCC-CEEEEEEEECCCCCCHHHHHHHhc
Confidence 4899999999998887754444444432 444433333334433322233 388888888865433 1 1
Q ss_pred --CCeeE-EEecCHHHHHHHHHHHH
Q 028633 82 --NGVAF-RLIPESTQVKNALREME 103 (206)
Q Consensus 82 --~~~~f-~~vP~~~qv~~A~~l~~ 103 (206)
-...| -+-.+.++++.+.+-+.
T Consensus 128 ~~~~~~~~~ltg~~~~~~~~~k~~~ 152 (207)
T COG1999 128 LNFDPRWIGLTGTPEQIEEVAKAYG 152 (207)
T ss_pred ccCCCCeeeeeCCHHHHHHHHHHhc
Confidence 11222 24445777777666543
No 17
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=52.09 E-value=1.1e+02 Score=24.25 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=47.8
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhc----
Q 028633 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLK---- 80 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~---- 80 (206)
..|-|++.|.+|+.+-.+.-. |+.+-++|+ +..++-++.+..++ . . |++|..|+.+..+.++
T Consensus 23 ~~P~f~l~~~~g~~v~l~~~~-Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~----~-~-~~~vv~vs~D~~~~~~~f~~ 95 (167)
T PRK00522 23 KAPDFTLVANDLSDVSLADFA-GKRKVLNIFPSIDTGVCATSVRKFNQEAAE----L-D-NTVVLCISADLPFAQKRFCG 95 (167)
T ss_pred CCCCeEEEcCCCcEEehHHhC-CCEEEEEEEcCCCCCccHHHHHHHHHHHHH----c-C-CcEEEEEeCCCHHHHHHHHH
Confidence 479999999999887666544 444444444 45555554433222 2 2 4899999999887662
Q ss_pred cCCee-EEEecCH
Q 028633 81 VNGVA-FRLIPES 92 (206)
Q Consensus 81 ~~~~~-f~~vP~~ 92 (206)
..++. |.++.|.
T Consensus 96 ~~~~~~~~~lsD~ 108 (167)
T PRK00522 96 AEGLENVITLSDF 108 (167)
T ss_pred hCCCCCceEeecC
Confidence 44554 7888874
No 18
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=48.75 E-value=98 Score=23.06 Aligned_cols=51 Identities=14% Similarity=0.306 Sum_probs=33.5
Q ss_pred ecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhccCC--eeEEEecCHHHHHHHHHHHHHcCC
Q 028633 42 FKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNG--VAFRLIPESTQVKNALREMEKAGF 107 (206)
Q Consensus 42 ~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~~~~--~~f~~vP~~~qv~~A~~l~~~~g~ 107 (206)
-|+.|++.|++.+++.+... .+.+ ++| ...--.|+.+.++.+.+-|++.|.
T Consensus 44 ~sr~Dv~~Fi~~l~~~~~~~--------------Ls~L-T~GvH~HtI~a~~~e~l~~I~~~L~~~G~ 96 (98)
T PF02829_consen 44 SSRRDVDKFIEKLEKSKAKP--------------LSSL-TGGVHYHTIEAPDEEDLDKIEEALKKKGF 96 (98)
T ss_dssp -SHHHHHHHHHHHHH--S----------------STTG-GGGEEEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHhccCCcc--------------hHHh-cCCEeeEEEEECCHHHHHHHHHHHHHCCC
Confidence 49999999999998764221 1111 223 223358999999999999988775
No 19
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=46.72 E-value=1.3e+02 Score=24.32 Aligned_cols=67 Identities=15% Similarity=0.196 Sum_probs=45.0
Q ss_pred EEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhccCCeeEEEecCHHHHHHHHHHHHH
Q 028633 37 LGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEK 104 (206)
Q Consensus 37 v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~~~~~~f~~vP~~~qv~~A~~l~~~ 104 (206)
-+++|+|+.-++.+.+.++...+..... .++.+++=..+-.+...|..-.++|.....+...+++.+
T Consensus 51 ~~iiftS~~av~~~~~~~~~~~~~~~~~-~~~~avG~~Ta~~l~~~g~~~~~~~~~~~~~~L~~~i~~ 117 (239)
T cd06578 51 DWLIFTSPNAVEAFFEALEELGLRALAG-LKIAAVGPKTAEALREAGLTADFVPEEGDSEGLLELLEL 117 (239)
T ss_pred CEEEEECHHHHHHHHHHHHhhCCccccC-CEEEEECHHHHHHHHHcCCCceeCCCccCHHHHHHHHHh
Confidence 3456799999999999988655444444 788888777666666666555566555555555555443
No 20
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=46.55 E-value=19 Score=27.01 Aligned_cols=77 Identities=21% Similarity=0.338 Sum_probs=47.4
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh----c
Q 028633 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----K 80 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l----~ 80 (206)
..|=|.+++.+|..+-..... |+.+-++|+ +......+. ++. ..+...|+.|..|+.+..-.+ +
T Consensus 2 ~~p~f~l~~~~g~~~~l~~~~-gk~~ll~f~~~~~cp~C~~~~~~l~-~~~---~~~~~~~~~vv~is~d~~~~~~~~~~ 76 (140)
T cd03017 2 KAPDFTLPDQDGETVSLSDLR-GKPVVLYFYPKDDTPGCTKEACDFR-DLY---EEFKALGAVVIGVSPDSVESHAKFAE 76 (140)
T ss_pred CCCCccccCCCCCEEeHHHhC-CCcEEEEEeCCCCCCchHHHHHHHH-HHH---HHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 468899999999987776654 444444544 334333322 222 222223589999998877655 2
Q ss_pred cCCeeEEEecCHH
Q 028633 81 VNGVAFRLIPEST 93 (206)
Q Consensus 81 ~~~~~f~~vP~~~ 93 (206)
..++.|.++-+..
T Consensus 77 ~~~~~~~~l~D~~ 89 (140)
T cd03017 77 KYGLPFPLLSDPD 89 (140)
T ss_pred HhCCCceEEECCc
Confidence 4567777777654
No 21
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=42.66 E-value=1.9e+02 Score=23.71 Aligned_cols=77 Identities=10% Similarity=0.149 Sum_probs=47.1
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhc----
Q 028633 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLK---- 80 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~---- 80 (206)
..|-|.+.+..|. +-.+.-.+++.+.+||+ +..+..++-+. .++..+.|++|..|+.+.....+
T Consensus 4 ~aP~F~~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~----~~~f~~~gv~vigvS~D~~~~~~~~~~ 78 (203)
T cd03016 4 TAPNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKL----APEFKKRNVKLIGLSVDSVESHIKWIE 78 (203)
T ss_pred CCCCeEEecCCCc-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHH----HHHHHHcCCEEEEEECCCHHHHHHHHh
Confidence 4789999988884 33333334344444444 55554443332 23333336999999999876542
Q ss_pred ------cCCeeEEEecCHH
Q 028633 81 ------VNGVAFRLIPEST 93 (206)
Q Consensus 81 ------~~~~~f~~vP~~~ 93 (206)
..++.|.++.|+.
T Consensus 79 ~i~~~~~~~~~fpil~D~~ 97 (203)
T cd03016 79 DIEEYTGVEIPFPIIADPD 97 (203)
T ss_pred hHHHhcCCCCceeEEECch
Confidence 1478899998864
No 22
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=41.84 E-value=30 Score=30.10 Aligned_cols=93 Identities=17% Similarity=0.311 Sum_probs=61.5
Q ss_pred ecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhccCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCce-eeee
Q 028633 42 FKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVP-VFQS 120 (206)
Q Consensus 42 ~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVP-vF~~ 120 (206)
++++||..+|+-+..++=+. + |+ ...+-.+.+.=++.++.+|..+++..|.+.+.|..+= +|-.
T Consensus 28 L~e~eANemlAlL~~~gI~A--~--K~-----------~~~~g~~~l~Ve~~~fa~Av~iL~~~GlPr~~f~~l~d~Fp~ 92 (246)
T COG4669 28 LSEKEANEMLALLMSHGINA--E--KK-----------ADKDGGTSLLVEESDFAEAVEILNQNGLPRKKFTTLGDIFPK 92 (246)
T ss_pred CCHhHHHHHHHHHHHcCCcc--e--ee-----------ccCCCceEEEEcHHHHHHHHHHHHhcCCCCCCCCcHHHhCCc
Confidence 48899999999987763221 1 11 1122222344457899999999999999877666543 7888
Q ss_pred cceeEeeCCeeEeeeeecHHHHHHHHHHH
Q 028633 121 RSLVLRSQNKSYRPVFFRKEDLEKSLRRA 149 (206)
Q Consensus 121 ~~Lti~~~~~~~~PlFF~kedl~~~l~~~ 149 (206)
++|+-..-.++..=.|---++|+++|.++
T Consensus 93 dgLVsSP~eEkaR~~~~~eQ~le~tLs~m 121 (246)
T COG4669 93 DGLVSSPTEEKARLNYAKEQQLEQTLSKM 121 (246)
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 88876444444443455557788888764
No 23
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=40.62 E-value=73 Score=25.63 Aligned_cols=64 Identities=17% Similarity=0.140 Sum_probs=34.9
Q ss_pred CCCcEEEEEcCCCCeEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhh
Q 028633 11 AGVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVF 77 (206)
Q Consensus 11 ~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy 77 (206)
..+|-|.++|.+|..+-...-. |+.+-++|+ ++.-... +.++.++=++-+.. +++.-||+|=-+
T Consensus 30 ~~~~~f~L~d~~G~~~~~~~~~-Gk~~lv~F~yT~CpdvCp~~l~~-l~~~~~~l~~~~~~-v~~v~ISvDP~~ 100 (174)
T PF02630_consen 30 RIVPDFTLTDQDGKTVTLDDLK-GKWVLVFFGYTRCPDVCPTTLAN-LSQLQKQLGEEGKD-VQFVFISVDPER 100 (174)
T ss_dssp CSSST-EEEETTSSEEEGGGGT-TSEEEEEEE-TTSSSHHHHHHHH-HHHHHHHHHHTTTT-EEEEEEESSTTT
T ss_pred ccCCCcEEEcCCCCEecHHHhC-CCeEEEEEEEcCCCccCHHHHHH-HHHHHHHhhhccCc-eEEEEEEeCCCC
Confidence 3477899999999998766554 455444433 2332222 22222111111334 888888887554
No 24
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=40.03 E-value=48 Score=25.02 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=46.3
Q ss_pred CCCcEEEEEcCCCCeEEEeccCCCceEEEEEec----HHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh----ccC
Q 028633 11 AGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFK----KEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KVN 82 (206)
Q Consensus 11 ~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~----~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l----~~~ 82 (206)
..+|-|.+++.+|..+-.+.-.+.+.+-++|+. +- ....+.++++...+.++.|++|..|+.+..-.+ +..
T Consensus 5 ~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~-C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~ 83 (149)
T cd03018 5 DKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPV-CTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEEN 83 (149)
T ss_pred CcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCcc-HHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhc
Confidence 347889999999998776665442554444441 11 122222333222333333589999988765444 234
Q ss_pred CeeEEEecCH
Q 028633 83 GVAFRLIPES 92 (206)
Q Consensus 83 ~~~f~~vP~~ 92 (206)
++.|.++-|.
T Consensus 84 ~~~~~~~~D~ 93 (149)
T cd03018 84 GLTFPLLSDF 93 (149)
T ss_pred CCCceEecCC
Confidence 6777777664
No 25
>PRK11611 enhanced serine sensitivity protein SseB; Provisional
Probab=39.48 E-value=25 Score=30.59 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.1
Q ss_pred eCCeeEeeeeecHHHHHHHHHH
Q 028633 127 SQNKSYRPVFFRKEDLEKSLRR 148 (206)
Q Consensus 127 ~~~~~~~PlFF~kedl~~~l~~ 148 (206)
.+|..++|+|.+.+.++.++..
T Consensus 50 ~dG~~~iP~FTS~e~l~~a~~~ 71 (246)
T PRK11611 50 EDGTSVIPFFTSLEALQQAVED 71 (246)
T ss_pred CCCCEEEEEeCCHHHHHHhhhc
Confidence 5788999999999999987754
No 26
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=38.06 E-value=2.3e+02 Score=24.61 Aligned_cols=118 Identities=17% Similarity=0.166 Sum_probs=68.7
Q ss_pred CCcEEEEEcCC----------CCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh--
Q 028633 12 GVPVYALSNCN----------EEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL-- 79 (206)
Q Consensus 12 ~VPVF~vtn~~----------g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l-- 79 (206)
..||.++.+.. |-|++..= |.-.++.|+++-++= +++-.+..+. +....|-+.+|.--
T Consensus 81 ns~vv~l~g~~~~~ildf~~g~RPLVlnF---GS~TCPpF~~~l~~f---~~l~~~f~d~----adFl~VYI~EAHpsDg 150 (237)
T PF00837_consen 81 NSPVVTLDGQRSCRILDFAKGNRPLVLNF---GSCTCPPFMAKLDAF---KRLVEDFSDV----ADFLIVYIEEAHPSDG 150 (237)
T ss_pred CCceEeeCCCcceeHHHhccCCCCeEEEc---ccccchHHHHHHHHH---HHHHHHhhhh----hheehhhHhhhCcCCC
Confidence 36888887666 55666553 344566676655442 2222233332 56777777777543
Q ss_pred ---ccCCeeEEEecCHHHH----HHHHHHHHHcCCCCCCCCCceeeeec--------------ceeEeeCCee-----Ee
Q 028633 80 ---KVNGVAFRLIPESTQV----KNALREMEKAGFSDDAFAGVPVFQSR--------------SLVLRSQNKS-----YR 133 (206)
Q Consensus 80 ---~~~~~~f~~vP~~~qv----~~A~~l~~~~g~~~~~f~gVPvF~~~--------------~Lti~~~~~~-----~~ 133 (206)
..+... ||..+.+ .+|+.|+.+. .+.||+.=. .|.|=++|+- .-
T Consensus 151 W~~~~~~~~---i~qh~sledR~~aA~~l~~~~-------~~~pi~vD~mdN~~~~~YgA~PeRlyIi~~gkv~Y~Gg~G 220 (237)
T PF00837_consen 151 WAFGNNPYE---IPQHRSLEDRLRAAKLLKEEF-------PQCPIVVDTMDNNFNKAYGALPERLYIIQDGKVVYKGGPG 220 (237)
T ss_pred ccCCCCcee---ecCCCCHHHHHHHHHHHHhhC-------CCCCEEEEccCCHHHHHhCCCcceEEEEECCEEEEeCCCC
Confidence 222222 3444433 4666665432 567765433 3444445442 37
Q ss_pred eeeecHHHHHHHHHHH
Q 028633 134 PVFFRKEDLEKSLRRA 149 (206)
Q Consensus 134 PlFF~kedl~~~l~~~ 149 (206)
|..|+.+++...|+++
T Consensus 221 P~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 221 PFGYSPEELREWLEKY 236 (237)
T ss_pred CCcCCHHHHHHHHHhc
Confidence 9999999999999885
No 27
>PF11943 DUF3460: Protein of unknown function (DUF3460); InterPro: IPR021853 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 70 amino acids in length. This protein has a conserved WDK sequence motif.
Probab=36.71 E-value=27 Score=23.93 Aligned_cols=19 Identities=21% Similarity=0.529 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhcCcccc
Q 028633 44 KEDAEALLHQMKSMDPAMR 62 (206)
Q Consensus 44 ~~DA~~~l~~lk~~~p~~~ 62 (206)
..|+..||+++|..+|++.
T Consensus 4 ~Se~TqFl~~lk~~~Pele 22 (60)
T PF11943_consen 4 QSEITQFLNQLKAKHPELE 22 (60)
T ss_pred cCHHHHHHHHHHHhCCchH
Confidence 4688999999999999874
No 28
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters.
Probab=36.69 E-value=70 Score=25.52 Aligned_cols=16 Identities=0% Similarity=-0.101 Sum_probs=12.2
Q ss_pred EecCHHHHHHHHHHHH
Q 028633 88 LIPESTQVKNALREME 103 (206)
Q Consensus 88 ~vP~~~qv~~A~~l~~ 103 (206)
+.=++++++..++|..
T Consensus 119 v~l~~~e~~~l~~l~~ 134 (151)
T TIGR00854 119 VSVDDQDITAFRFLKQ 134 (151)
T ss_pred eeeCHHHHHHHHHHHH
Confidence 4557889999888864
No 29
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=35.30 E-value=53 Score=24.52 Aligned_cols=80 Identities=15% Similarity=0.141 Sum_probs=43.8
Q ss_pred CcEEEEEcCCCCeEEEeccCCCceEEEEEec---HHHHHHHHHHHHhcCccccCC---CeEEEEeechhh----hhh---
Q 028633 13 VPVYALSNCNEEFVLVSGAKTGKSLGLMCFK---KEDAEALLHQMKSMDPAMRKE---GSRVVPVPLNKV----FQL--- 79 (206)
Q Consensus 13 VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~---~~DA~~~l~~lk~~~p~~~~~---~~kV~~v~L~~v----y~l--- 79 (206)
.|-|++.+.+|..+-...- .++.+.++|+. ..-..+.+..+++...+++.. +++|..|+.+.- -.+
T Consensus 2 ~p~f~l~~~~g~~~~l~~~-~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~ 80 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSDL-KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAY 80 (142)
T ss_pred CCceEEEcCCCCEEchHHh-CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHH
Confidence 6889999999988765544 34555555531 111222233333222222221 288888887532 222
Q ss_pred -ccCCeeEEEecCHH
Q 028633 80 -KVNGVAFRLIPEST 93 (206)
Q Consensus 80 -~~~~~~f~~vP~~~ 93 (206)
+..+..|.++.+..
T Consensus 81 ~~~~~~~~~~l~~~~ 95 (142)
T cd02968 81 AKAFGPGWIGLTGTP 95 (142)
T ss_pred HHHhCCCcEEEECCH
Confidence 23457788888764
No 30
>PF07179 SseB: SseB protein N-terminal domain; InterPro: IPR009839 This family consists of several SseB proteins, which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli [] and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon [].
Probab=35.12 E-value=1.7e+02 Score=21.12 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=43.9
Q ss_pred HHHHHHhcCCCcEEEEEcCCCCe---------------EEEeccCCCceEEEEEecHHHHHHHHHHHHhcCccccCCCeE
Q 028633 3 AEAIEERLAGVPVYALSNCNEEF---------------VLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSR 67 (206)
Q Consensus 3 ~~~I~ekL~~VPVF~vtn~~g~~---------------~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~k 67 (206)
...+.+.|..-.+|+.+...+.. ..+... +|+.+-+.|.|.+.+.++.. .. ..
T Consensus 16 ~~~~~~~L~~a~~lvpv~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~~lpvFTs~e~l~~~~~----------~~-~~ 83 (124)
T PF07179_consen 16 EEAFLEALLKAEVLVPVDVDDDDEGGEIEFDDDSEIQFLTLEDP-DGERYLPVFTSWEELEKWYP----------DE-RP 83 (124)
T ss_pred HHHHHHHHhhCeEEEEEecccccccccccccCCCcceeEEEEcC-CCCEEEEEECCHHHHHhhhc----------cc-Cc
Confidence 35667777777777777655555 445545 46667777899998888777 11 45
Q ss_pred EEEeechhhhhh
Q 028633 68 VVPVPLNKVFQL 79 (206)
Q Consensus 68 V~~v~L~~vy~l 79 (206)
+..++...++++
T Consensus 84 ~~~~~~~~l~~~ 95 (124)
T PF07179_consen 84 IIVVPFEDLLEM 95 (124)
T ss_pred eecccHHHHHHH
Confidence 677777777666
No 31
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=35.12 E-value=1.2e+02 Score=19.50 Aligned_cols=39 Identities=26% Similarity=0.222 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhcCcc
Q 028633 13 VPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60 (206)
Q Consensus 13 VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~~p~ 60 (206)
-.-|.+..++|+.+. +.+ .|-++.+|+.-++.+|+.-|.
T Consensus 5 ~~~f~L~a~ng~via-sse--------~Y~sk~~a~~~I~~Vk~~a~~ 43 (49)
T PF07411_consen 5 QFRFRLKAGNGEVIA-SSE--------GYSSKADAEKGIESVKKNAPD 43 (49)
T ss_dssp EEEEEEE-TTS-EEE-EBE--------EBSSHHHHHHHHHHHHHHTTT
T ss_pred CEEEEEEcCCCCEEE-ecC--------CcCCHHHHHHHHHHHHHhCCC
Confidence 345778888887776 332 368999999999999988764
No 32
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=33.97 E-value=95 Score=25.95 Aligned_cols=98 Identities=15% Similarity=0.322 Sum_probs=61.9
Q ss_pred CCCcEEEEEcCCCCeEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhc---
Q 028633 11 AGVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLK--- 80 (206)
Q Consensus 11 ~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~--- 80 (206)
+.+|=|++.|.+|.++-...-.+.+.+-+||. +-.+|=+|-+.. +++.+.|+.|.-++-|..-..+
T Consensus 67 d~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY----~k~kka~aeV~GlS~D~s~sqKaF~ 142 (211)
T KOG0855|consen 67 DAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNY----EKFKKAGAEVIGLSGDDSASQKAFA 142 (211)
T ss_pred CcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccH----HHHhhcCceEEeeccCchHHHHHhh
Confidence 46899999999999987664333444444433 223455555443 3444435778777777665442
Q ss_pred -cCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCcee
Q 028633 81 -VNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPV 117 (206)
Q Consensus 81 -~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPv 117 (206)
...+-|.+..|++ .++++.-|-....|+|.|.
T Consensus 143 sKqnlPYhLLSDpk-----~e~ik~lGa~k~p~gg~~~ 175 (211)
T KOG0855|consen 143 SKQNLPYHLLSDPK-----NEVIKDLGAPKDPFGGLPG 175 (211)
T ss_pred hhccCCeeeecCcc-----hhHHHHhCCCCCCCCCccc
Confidence 3457888888874 4555566776667888773
No 33
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=33.50 E-value=43 Score=26.27 Aligned_cols=45 Identities=18% Similarity=0.096 Sum_probs=29.9
Q ss_pred CCCcEEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhc
Q 028633 11 AGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSM 57 (206)
Q Consensus 11 ~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~ 57 (206)
.++|.++.-|.+|..+.-.. |.-+-.-++..+.|++.+++.||+.
T Consensus 78 ~~vPtivFld~~g~vi~~i~--Gy~~~~~~~y~~~~~~~~~~~m~~a 122 (130)
T cd02960 78 QYVPRIMFVDPSLTVRADIT--GRYSNRLYTYEPADIPLLIENMKKA 122 (130)
T ss_pred cccCeEEEECCCCCCccccc--ccccCccceeCcCcHHHHHHHHHHH
Confidence 36888888888886654332 2222222334799999999999875
No 34
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=33.26 E-value=58 Score=24.28 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=21.4
Q ss_pred CCceEEEEEecHHHHHHHHHHHHhc
Q 028633 33 TGKSLGLMCFKKEDAEALLHQMKSM 57 (206)
Q Consensus 33 ~~~~v~~fF~~~~DA~~~l~~lk~~ 57 (206)
+...+|+-|-|.+||.+|.+.+...
T Consensus 81 ~~~~~GLnF~se~EA~~F~~~v~~~ 105 (106)
T smart00461 81 DKCVYGLNFASEEEAKKFRKKVLKA 105 (106)
T ss_pred CCeEEEeecCCHHHHHHHHHHHHhc
Confidence 4578999999999999999998653
No 35
>PF12164 SporV_AA: Stage V sporulation protein AA; InterPro: IPR021997 This domain family is found in bacteria - primarily Firmicutes, and is approximately 90 amino acids in length. There is a single completely conserved residue G that may be functionally important. Most annotation associated with this domain suggests that it is involved in the fifth stage of sporulation, however there is little publication to back this up. ; PDB: 3G74_B.
Probab=32.61 E-value=37 Score=24.99 Aligned_cols=25 Identities=24% Similarity=0.577 Sum_probs=17.7
Q ss_pred HHHHhcCCCcEEEEEcCCCCeEEEe
Q 028633 5 AIEERLAGVPVYALSNCNEEFVLVS 29 (206)
Q Consensus 5 ~I~ekL~~VPVF~vtn~~g~~~l~~ 29 (206)
++.++|...|+|.++..++.-++++
T Consensus 34 ~~~~klk~l~i~~~~~~d~~r~Vis 58 (93)
T PF12164_consen 34 EIENKLKALPIYKIKKKDKNRYVIS 58 (93)
T ss_dssp HHHHHHHTSEEEE-BTTT--EEEEE
T ss_pred HHHHHhhccEeeeecCCCCCEEEEE
Confidence 7899999999999987776554443
No 36
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=32.07 E-value=2e+02 Score=20.87 Aligned_cols=61 Identities=16% Similarity=0.252 Sum_probs=47.1
Q ss_pred eEeeCCeeEeeeeecHHHHHHHHHHHhhcccccCCCCccCcEEEEeHHHHHHhhhcCCCCCCceEEEecCc
Q 028633 124 VLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPG 194 (206)
Q Consensus 124 ti~~~~~~~~PlFF~kedl~~~l~~~~~~~~~~~p~~~~~~I~V~~Le~vi~~m~~~~~~~~~~i~fiPp~ 194 (206)
+++.+++..+.+|=+++|+++--..+..+. .| .|.|+-++-++|...-++.. =...+||++
T Consensus 17 si~~~~~~~Vl~FE~edDA~RYa~lLEAqd---~~---~p~Ve~id~~~i~~fC~~~g----y~~~iv~~g 77 (86)
T PF11360_consen 17 SIQNKDRNVVLMFEDEDDAERYAGLLEAQD---FP---DPTVEEIDPEEIEEFCRSAG----YEYEIVPPG 77 (86)
T ss_pred EEEeCCCCEEEEEccHHHHHHHHHHHHhcC---CC---CCCeEEECHHHHHHHHHHCC----ceEEEECCC
Confidence 466677889999999999999777765543 23 57899999999998877644 247788877
No 37
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=31.76 E-value=1.1e+02 Score=23.92 Aligned_cols=83 Identities=17% Similarity=0.212 Sum_probs=52.7
Q ss_pred CCcEEEEEcCC---CCeEEEec-cCCCceEEEEEe-------cHHH-HHHHHHHHHhcCccccCCCe-EEEEeechhhhh
Q 028633 12 GVPVYALSNCN---EEFVLVSG-AKTGKSLGLMCF-------KKED-AEALLHQMKSMDPAMRKEGS-RVVPVPLNKVFQ 78 (206)
Q Consensus 12 ~VPVF~vtn~~---g~~~l~~~-~~~~~~v~~fF~-------~~~D-A~~~l~~lk~~~p~~~~~~~-kV~~v~L~~vy~ 78 (206)
..|-|++.+.. |+.+-.+. ..++. +-+||+ +..+ +.+|-+.. +++.+.|+ .|..+|-+..+.
T Consensus 4 ~aPdF~l~~~~~~~g~~v~L~~~~~gk~-vvl~fyP~~~tp~Ct~e~~~~~~~~~----~~f~~~g~~~V~~iS~D~~~~ 78 (155)
T cd03013 4 KLPNVTLFEYVPGPPNPVNLSELFKGKK-VVIFGVPGAFTPTCSAQHLPGYVENA----DELKAKGVDEVICVSVNDPFV 78 (155)
T ss_pred cCCCeEeeeeccCCCceeeHHHHhCCCc-EEEEEeCCCCCCCCchhHHHHHHHhH----HHHHHCCCCEEEEEECCCHHH
Confidence 47889988774 77766565 23444 444444 4555 66665554 33333357 599999999998
Q ss_pred hc----cCCe--eEEEecCHHHHHHHHH
Q 028633 79 LK----VNGV--AFRLIPESTQVKNALR 100 (206)
Q Consensus 79 l~----~~~~--~f~~vP~~~qv~~A~~ 100 (206)
++ ..++ .|.++.|.. -+.|+.
T Consensus 79 ~~~~~~~~~~~~~f~lLsD~~-~~~~~~ 105 (155)
T cd03013 79 MKAWGKALGAKDKIRFLADGN-GEFTKA 105 (155)
T ss_pred HHHHHHhhCCCCcEEEEECCC-HHHHHH
Confidence 74 4455 799999863 344443
No 38
>PRK11633 cell division protein DedD; Provisional
Probab=31.72 E-value=75 Score=27.31 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=31.9
Q ss_pred HHHHHhcC--CCcEEEEE--cCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhc
Q 028633 4 EAIEERLA--GVPVYALS--NCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSM 57 (206)
Q Consensus 4 ~~I~ekL~--~VPVF~vt--n~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~ 57 (206)
+++..+|. |...|+.. ..+|... . -.+|+| .++++|++.+.+|++.
T Consensus 164 ~~l~~kL~~~G~~Ay~~~~~~~~G~~t--R-----V~VGP~-~sk~~ae~~~~~Lk~~ 213 (226)
T PRK11633 164 NEIVAKLRLSGYRVYTVPSTPVQGKIT--R-----IYVGPD-ASKDKLKGSLGELKQL 213 (226)
T ss_pred HHHHHHHHHCCCeeEEEeeecCCCcEE--E-----EEeCCC-CCHHHHHHHHHHHHHh
Confidence 34566664 89999975 3444321 1 237776 8999999999999875
No 39
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=31.08 E-value=1.6e+02 Score=21.67 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=20.4
Q ss_pred CceEEEEEecHHHHHHHHHHHHh
Q 028633 34 GKSLGLMCFKKEDAEALLHQMKS 56 (206)
Q Consensus 34 ~~~v~~fF~~~~DA~~~l~~lk~ 56 (206)
...+|+-|-|.+||.+|...++.
T Consensus 80 ~~~~GL~F~se~eA~~F~~~v~~ 102 (104)
T cd00837 80 NCVYGLNFASEEEAAQFRKKVLE 102 (104)
T ss_pred CcEEEEeeCCHHHHHHHHHHHHh
Confidence 46799999999999999999865
No 40
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=30.95 E-value=90 Score=22.26 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=17.3
Q ss_pred HHHHHhcC--CCcEEEEEcCCCCeE
Q 028633 4 EAIEERLA--GVPVYALSNCNEEFV 26 (206)
Q Consensus 4 ~~I~ekL~--~VPVF~vtn~~g~~~ 26 (206)
.++.++++ ++|.+++.|.+|..+
T Consensus 72 ~~l~~~~~v~gtPt~~~~d~~G~~v 96 (112)
T PF13098_consen 72 KELAQRYGVNGTPTIVFLDKDGKIV 96 (112)
T ss_dssp HHHHHHTT--SSSEEEECTTTSCEE
T ss_pred HHHHHHcCCCccCEEEEEcCCCCEE
Confidence 34555554 899999999999766
No 41
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=30.28 E-value=33 Score=19.93 Aligned_cols=13 Identities=46% Similarity=0.769 Sum_probs=11.0
Q ss_pred CCHHHHHHhcCCC
Q 028633 1 MSAEAIEERLAGV 13 (206)
Q Consensus 1 L~~~~I~ekL~~V 13 (206)
||++|+.++|..+
T Consensus 16 ls~ee~~~RL~~i 28 (28)
T PF12368_consen 16 LSEEEVAERLAAI 28 (28)
T ss_pred CCHHHHHHHHHcC
Confidence 7899999999753
No 42
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=29.46 E-value=65 Score=29.68 Aligned_cols=40 Identities=28% Similarity=0.426 Sum_probs=27.6
Q ss_pred CCceeeeecceeEeeC-CeeEeeeeecHHHHHHHHHHHhhc
Q 028633 113 AGVPVFQSRSLVLRSQ-NKSYRPVFFRKEDLEKSLRRASSD 152 (206)
Q Consensus 113 ~gVPvF~~~~Lti~~~-~~~~~PlFF~kedl~~~l~~~~~~ 152 (206)
-|+|||..+.-+.-++ .+.-+|+||.-++|+..+-+-.++
T Consensus 288 ~G~~v~L~~~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~r 328 (360)
T PF07429_consen 288 LGKKVFLSRDNPFWQDLKEQGIPVLFYGDELDEALVREAQR 328 (360)
T ss_pred cCCeEEEecCChHHHHHHhCCCeEEeccccCCHHHHHHHHH
Confidence 4999999995554222 344789999999998765444333
No 43
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=28.41 E-value=2.2e+02 Score=20.86 Aligned_cols=46 Identities=9% Similarity=0.097 Sum_probs=30.9
Q ss_pred HHHHHHhc--CCCcEEEEEcCC-CCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhc
Q 028633 3 AEAIEERL--AGVPVYALSNCN-EEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSM 57 (206)
Q Consensus 3 ~~~I~ekL--~~VPVF~vtn~~-g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~ 57 (206)
..++..++ .++|.+++-+.+ |+.+... .| +++.++-.++|+.+...
T Consensus 73 ~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~-------~G--~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 73 EKELARKYRVRFTPTVIFLDPEGGKEIARL-------PG--YLPPDEFLAYLEYVQEK 121 (125)
T ss_pred HHHHHHHcCCccccEEEEEcCCCCceeEEe-------cC--CCCHHHHHHHHHHHHhh
Confidence 35666665 579999988888 6654322 23 35778888888887654
No 44
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=28.26 E-value=87 Score=24.19 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=34.7
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe-----cHHHHHHHHHHHHhcCccccCCCeEEEEeech
Q 028633 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-----KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLN 74 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-----~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~ 74 (206)
.+|-|.+.|.+|+.+-.+.-. |+.+-++|+ +..+.. .|+++.++ .++.|+.|..|+.+
T Consensus 1 ~~~~f~l~d~~G~~v~l~~~~-Gk~vvl~fwatwC~C~~e~p-~l~~l~~~---~~~~~~~vv~v~~~ 63 (152)
T cd00340 1 SIYDFSVKDIDGEPVSLSKYK-GKVLLIVNVASKCGFTPQYE-GLEALYEK---YKDRGLVVLGFPCN 63 (152)
T ss_pred CcceeEEECCCCCEEeHHHhC-CCEEEEEEEcCCCCchHHHH-HHHHHHHH---hcCCCEEEEEeccC
Confidence 378899999999887766654 455444443 334333 34444333 33335888888754
No 45
>TIGR02544 III_secr_YscJ type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF.
Probab=28.09 E-value=2.3e+02 Score=23.52 Aligned_cols=58 Identities=12% Similarity=0.182 Sum_probs=34.6
Q ss_pred ecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhccCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCC
Q 028633 42 FKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAG 114 (206)
Q Consensus 42 ~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~g 114 (206)
++.+||.+.++.|..++=. +++... ..+| .--+||. +++..|+.++..+|....++.|
T Consensus 26 L~~~da~~I~~~L~~~gI~-----y~~~~~--------~~~g-~~I~Vp~-~~~~~ar~~La~~glp~~~~~~ 83 (193)
T TIGR02544 26 LSEREANEMLAVLMRHGID-----AEKEGS--------GKGG-YTISVEE-SDFARAVELLRQYGLPRQRFVN 83 (193)
T ss_pred CCHHHHHHHHHHHHHCCCC-----eEEeec--------CCCC-eEEEEcH-HHHHHHHHHHHHcCCCCCCCCC
Confidence 6899999999999876311 222100 1112 1125554 4777899999888875543333
No 46
>cd00001 PTS_IIB_man PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. The active site histidine receives a phosphate group from the IIA subunit and transfers it to the substrate.
Probab=26.97 E-value=1.5e+02 Score=23.63 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=16.7
Q ss_pred EecCHHHHHHHHHHHHHcCCCCCCCCCceeee
Q 028633 88 LIPESTQVKNALREMEKAGFSDDAFAGVPVFQ 119 (206)
Q Consensus 88 ~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~ 119 (206)
+.=++++++..++|.. .||+||+
T Consensus 118 v~l~~~e~~~lk~l~~---------~Gv~v~~ 140 (151)
T cd00001 118 VSLDEEDVAAFKELAQ---------KGVKVEI 140 (151)
T ss_pred eecCHHHHHHHHHHHH---------cCCEEEE
Confidence 4557889999888864 3777765
No 47
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=26.71 E-value=1.5e+02 Score=22.90 Aligned_cols=64 Identities=17% Similarity=0.352 Sum_probs=36.4
Q ss_pred CCCcEEEEEcCCCCeEEEeccCCCceEEEEEecH--HHHHHHHHHHHhcCccccCCCeEEEEeechh
Q 028633 11 AGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK--EDAEALLHQMKSMDPAMRKEGSRVVPVPLNK 75 (206)
Q Consensus 11 ~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~--~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~ 75 (206)
..+|=|++.+.+|+.+-.+... ++.+.++|++. ....+.+..+.+...+..+.+++|..++.+.
T Consensus 39 ~~~p~~~~~~~~g~~~~l~~~~-~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~ 104 (173)
T PRK03147 39 KEAPNFVLTDLEGKKIELKDLK-GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDE 104 (173)
T ss_pred CCCCCcEeecCCCCEEeHHHcC-CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 3578899999999987665543 45455555532 1233333333332222222247888888763
No 48
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=26.67 E-value=2.6e+02 Score=21.83 Aligned_cols=49 Identities=6% Similarity=0.016 Sum_probs=28.5
Q ss_pred HhcCCCcEEEEEcCC-CCeEEEeccCCCceEEEEEecHHHHHHHHHHHHh
Q 028633 8 ERLAGVPVYALSNCN-EEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKS 56 (206)
Q Consensus 8 ekL~~VPVF~vtn~~-g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~ 56 (206)
++....=|.+.-|.. +...+...-++...+..+++++.|++++++.++.
T Consensus 81 ~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~~l~~~l~~ 130 (138)
T cd02122 81 AERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGMEILELLER 130 (138)
T ss_pred HHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHHHHHHHHHc
Confidence 334445554545554 4434432222223455677999999999999853
No 49
>TIGR00743 conserved hypothetical protein. These small proteins are approximately 100 amino acids in length and appear to be found only in gamma proteobacteria. The function of this protein family is unknown.
Probab=26.36 E-value=2.1e+02 Score=21.38 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=31.5
Q ss_pred ceEEEEEecHHHHHHHHHHHHhcCccccCC--CeEEEEeechhhhhhc--------cCCeeEEE
Q 028633 35 KSLGLMCFKKEDAEALLHQMKSMDPAMRKE--GSRVVPVPLNKVFQLK--------VNGVAFRL 88 (206)
Q Consensus 35 ~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~--~~kV~~v~L~~vy~l~--------~~~~~f~~ 88 (206)
-.+..+|=++++|+++|+.+...-...-+. .++-...+.+.-++|+ .+.+.|++
T Consensus 29 a~~~~~~~~~~~Ae~~l~~l~ekAk~vesepc~I~~~i~~~e~g~~L~a~F~FsCqAEklIFQL 92 (95)
T TIGR00743 29 SKFSRFFATRAEAESFLAKLTEKARAVESEPCEIASEITDVEDGVELDADFTFSCQAEMIIFEL 92 (95)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHHHhhcCCceeEEEEEEcCCcEEEEEEEEEEEEeeeEEEEe
Confidence 446667779999999999876432222211 1333333446666662 45566654
No 50
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=26.33 E-value=1.4e+02 Score=20.56 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=21.4
Q ss_pred ceEEEEEecH-----HHHHHHHHHHHhcCccccCCCeEEEEeechhh
Q 028633 35 KSLGLMCFKK-----EDAEALLHQMKSMDPAMRKEGSRVVPVPLNKV 76 (206)
Q Consensus 35 ~~v~~fF~~~-----~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~v 76 (206)
+.+.++|.+. ......|.++.++.++ ... ++|..|+++.=
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~-v~~v~Vs~d~~ 46 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDD-VEFVFVSLDED 46 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTT-EEEEEEE-SSS
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCC-EEEEEEEeCCC
Confidence 4556666643 2233344444444443 344 99999999854
No 51
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=25.91 E-value=77 Score=28.19 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhcccccCCCCccCcEEEEeHHHHHHhhhcCCC
Q 028633 141 DLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTT 182 (206)
Q Consensus 141 dl~~~l~~~~~~~~~~~p~~~~~~I~V~~Le~vi~~m~~~~~ 182 (206)
++..++.++++.- |..++..|||-+|+++.+.++.+.|
T Consensus 173 ~i~~Av~~aR~~~----~~~~kIEVEvesle~~~eAl~agaD 210 (280)
T COG0157 173 SITEAVRRARAAA----PFTKKIEVEVESLEEAEEALEAGAD 210 (280)
T ss_pred cHHHHHHHHHHhC----CCCceEEEEcCCHHHHHHHHHcCCC
Confidence 6788888888773 6544568999999999999998653
No 52
>PRK09756 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=25.68 E-value=3.5e+02 Score=21.66 Aligned_cols=72 Identities=15% Similarity=0.258 Sum_probs=45.7
Q ss_pred CeEEEEeechhhhhh-c---cCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecceeE-----eeCCeeEee-
Q 028633 65 GSRVVPVPLNKVFQL-K---VNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVL-----RSQNKSYRP- 134 (206)
Q Consensus 65 ~~kV~~v~L~~vy~l-~---~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~Lti-----~~~~~~~~P- 134 (206)
|+++...+.+++.+. + .+.-.|-++.+++.+..+ .+ .|+| .+.|.+ ..|.+.+.+
T Consensus 58 gvk~~i~sv~~a~~~l~~~~~~~~vlvl~~~~~da~~l---~~---------~g~~---i~~iNiG~m~~~~g~~~i~~~ 122 (158)
T PRK09756 58 GFGIRFFTIEKTINVIGKAAPHQKIFLICRTPQTVRKL---VE---------GGID---LKDVNVGNMHFSEGKKQISSK 122 (158)
T ss_pred CCEEEEEEHHHHHHHHHhccCCceEEEEECCHHHHHHH---HH---------cCCC---CCEEEECCCcCCCCCEEEecc
Confidence 589999999999765 2 234678888888665553 32 2444 233333 345555655
Q ss_pred eeecHHHHHHHHHHHhhc
Q 028633 135 VFFRKEDLEKSLRRASSD 152 (206)
Q Consensus 135 lFF~kedl~~~l~~~~~~ 152 (206)
+|++.+|++.. .++..+
T Consensus 123 v~l~~ed~~~l-~~l~~~ 139 (158)
T PRK09756 123 VYVDDQDLADL-RFIKQR 139 (158)
T ss_pred eeeCHHHHHHH-HHHHHc
Confidence 99999999764 444333
No 53
>PF03243 MerB: Alkylmercury lyase; InterPro: IPR004927 Mercury is a highly toxic metal. Toxicity can result from three different mercurial forms: elemental, inorganic ion and organomercurial compounds. The ability of bacteria to detoxify mercurial compounds by reduction and volatilisation is conferred by the Mer genes, which are usually plasmid encoded (although chromosome resistance determinants have also occasionally been identified) []. Organomercurial lyase (MerB), also known as alkylmercury lyase, mediates the first of the two steps in the microbial detoxification of organomercurial salts (the other catalysed by mercuric reductase). Organomercurial lyase catalyses the protonolysis of the C-Hg bond in a wide range of organomercurial salts (primary, secondary, tertiary, alkyl, vinyl, allyl and aryl) to Hg(II) and the respective organic compound []: RHg(+) + H(+) = RH + Hg(2+) Hg(II) is subsequently detoxified by mercuric reductase. The enzyme has been purified to homogeneity in Escherichia coli and has been found to be a 22.4kDa monomer with no detectable cofactors or metal ions.; GO: 0018836 alkylmercury lyase activity, 0046413 organomercury catabolic process; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=25.32 E-value=63 Score=24.91 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=23.7
Q ss_pred EEEecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh
Q 028633 39 LMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL 79 (206)
Q Consensus 39 ~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l 79 (206)
.||-|.+.|++++++ +|+ ..-..++++++|++
T Consensus 88 ~fF~s~~~a~~W~~~----~p~-----~~g~il~v~ea~~l 119 (127)
T PF03243_consen 88 HFFASEEAAEAWLAE----HPD-----EGGQILSVEEAFEL 119 (127)
T ss_dssp EEESSHHHHHHHHHT----TTS-----TT-EEEEHHHHHHH
T ss_pred EecCCHHHHHHHHHH----CCC-----CCeEEEeHHHHHHH
Confidence 366799999999887 563 23466888888876
No 54
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=24.68 E-value=3.3e+02 Score=21.91 Aligned_cols=76 Identities=21% Similarity=0.363 Sum_probs=45.5
Q ss_pred CCcEEEEEc-CCCCeEEEe--ccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhc-
Q 028633 12 GVPVYALSN-CNEEFVLVS--GAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLK- 80 (206)
Q Consensus 12 ~VPVF~vtn-~~g~~~l~~--~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~- 80 (206)
..|-|.+.+ ..|+...++ .-. |+.+-++|+ +..++..+-+.. +++.+.|++|..|+.+..+.++
T Consensus 7 ~aP~f~l~~~~~g~~~~~sl~d~~-Gk~vvl~F~p~~~cp~C~~el~~l~~~~----~~~~~~gv~vi~VS~D~~~~~~~ 81 (187)
T TIGR03137 7 EIKPFKATAYHNGEFVEVTDEDVK-GKWSVFFFYPADFTFVCPTELEDLADKY----AELKKLGVEVYSVSTDTHFVHKA 81 (187)
T ss_pred cCCCcEeeeccCCceeEecHHHHC-CCEEEEEEECCCcCCcCHHHHHHHHHHH----HHHHhcCCcEEEEeCCCHHHHHH
Confidence 469999987 567643333 332 454555554 455555543332 2222235899999999876542
Q ss_pred -------cCCeeEEEecCH
Q 028633 81 -------VNGVAFRLIPES 92 (206)
Q Consensus 81 -------~~~~~f~~vP~~ 92 (206)
..++.|.++.|+
T Consensus 82 ~~~~~~~~~~l~fpllsD~ 100 (187)
T TIGR03137 82 WHDTSEAIGKITYPMLGDP 100 (187)
T ss_pred HHhhhhhccCcceeEEECC
Confidence 125788899886
No 55
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=24.42 E-value=94 Score=26.45 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=27.3
Q ss_pred CCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhc
Q 028633 23 EEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSM 57 (206)
Q Consensus 23 g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~ 57 (206)
|-++|+-...+|....++||+.....+||+.|++.
T Consensus 132 G~~~lv~~~kdG~~~p~L~Fh~gg~~~fl~~L~~~ 166 (213)
T PF12068_consen 132 GWWYLVFILKDGTSLPPLHFHDGGSKEFLKSLQRY 166 (213)
T ss_pred CceEEEEEecCCCccCceEEecCCHHHHHHHHHhh
Confidence 55655554446778888899999999999999864
No 56
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=24.01 E-value=2.5e+02 Score=20.83 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.7
Q ss_pred CceEEEEEecHHHHHHHHHHHHhc
Q 028633 34 GKSLGLMCFKKEDAEALLHQMKSM 57 (206)
Q Consensus 34 ~~~v~~fF~~~~DA~~~l~~lk~~ 57 (206)
...+|+-|-|.+||.+|.+.+.+.
T Consensus 87 ~~~~GLnF~se~eA~~F~~~v~~~ 110 (111)
T PF00568_consen 87 DCVYGLNFASEEEADQFYKKVQEA 110 (111)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCHHHHHHHHHHHhcc
Confidence 358999999999999999998653
No 57
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=23.57 E-value=2.5e+02 Score=19.99 Aligned_cols=27 Identities=33% Similarity=0.361 Sum_probs=21.2
Q ss_pred HHHHhcCCC-cEEEEEcCCCCeEEEecc
Q 028633 5 AIEERLAGV-PVYALSNCNEEFVLVSGA 31 (206)
Q Consensus 5 ~I~ekL~~V-PVF~vtn~~g~~~l~~~~ 31 (206)
.|.+.|.+= .++.++|.+|.-++++..
T Consensus 28 ~v~~Al~~~~~~l~LtD~kGr~~lVp~~ 55 (74)
T PF11305_consen 28 AVTDALADGSGVLTLTDEKGRRVLVPAA 55 (74)
T ss_pred HHHHHHhCCCceEEEEeCCCCEEEEECC
Confidence 445556655 999999999999998853
No 58
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=22.62 E-value=84 Score=24.63 Aligned_cols=20 Identities=25% Similarity=0.610 Sum_probs=14.9
Q ss_pred CCCcEEEEEcCCCCeEEEec
Q 028633 11 AGVPVYALSNCNEEFVLVSG 30 (206)
Q Consensus 11 ~~VPVF~vtn~~g~~~l~~~ 30 (206)
++|++|++.+-++..+++..
T Consensus 90 ~gigIFavStydtDhiLVr~ 109 (128)
T COG3603 90 NGIGIFAVSTYDTDHILVRE 109 (128)
T ss_pred CCccEEEEEeccCceEEEeh
Confidence 48999999988876555543
No 59
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=22.56 E-value=1.9e+02 Score=22.05 Aligned_cols=25 Identities=32% Similarity=0.266 Sum_probs=20.8
Q ss_pred CCceEEEEEecHHHHHHHHHHHHhc
Q 028633 33 TGKSLGLMCFKKEDAEALLHQMKSM 57 (206)
Q Consensus 33 ~~~~v~~fF~~~~DA~~~l~~lk~~ 57 (206)
+..++|+=|-|++||.+|...|...
T Consensus 82 ~~~v~GLnF~Se~eA~~F~~~v~~A 106 (111)
T cd01207 82 ARQVYGLNFGSKEDATMFASAMLSA 106 (111)
T ss_pred CCeEEeeccCCHHHHHHHHHHHHHH
Confidence 3478998899999999999988653
No 60
>PRK13599 putative peroxiredoxin; Provisional
Probab=21.81 E-value=1.8e+02 Score=24.41 Aligned_cols=76 Identities=12% Similarity=0.193 Sum_probs=48.1
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhc----
Q 028633 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLK---- 80 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~---- 80 (206)
..|-|++.+..|...+.+.-. |+.+.+||+ +..+.-++.+. .++..+.|++|..+|.+..+...
T Consensus 7 ~aPdF~l~t~~G~~~~~~~~~-Gk~vVL~~~pa~~tpvCt~El~~l~~~----~~~f~~~gv~vigIS~D~~~~~~~w~~ 81 (215)
T PRK13599 7 KFPSMEVVTTQGVKRLPEDYA-GKWFVLFSHPADFTPVCTTEFVEFARK----ANDFKELNTELIGLSVDQVFSHIKWVE 81 (215)
T ss_pred CCCCCEeECCCCcEecHHHHC-CCeEEEEEeCCCCCCcCHHHHHHHHHH----HHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 479999999999866544432 444444443 44444443322 23433336999999999987552
Q ss_pred ------cCCeeEEEecCH
Q 028633 81 ------VNGVAFRLIPES 92 (206)
Q Consensus 81 ------~~~~~f~~vP~~ 92 (206)
..++.|.++.|.
T Consensus 82 ~i~~~~~~~i~fPil~D~ 99 (215)
T PRK13599 82 WIKDNTNIAIPFPVIADD 99 (215)
T ss_pred hHHHhcCCCCceeEEECC
Confidence 236889999986
No 61
>PRK12338 hypothetical protein; Provisional
Probab=21.42 E-value=3.5e+02 Score=24.46 Aligned_cols=60 Identities=15% Similarity=0.376 Sum_probs=38.9
Q ss_pred ecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhccCC--eeEEEecCHHHHHHHHHHHHHcCCCCCC
Q 028633 42 FKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNG--VAFRLIPESTQVKNALREMEKAGFSDDA 111 (206)
Q Consensus 42 ~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~~~~--~~f~~vP~~~qv~~A~~l~~~~g~~~~~ 111 (206)
=|..|.+.|++.+++.+ +-... +.-.|.+. +| ...--.||.+.++.+.+-|++.|.-+++
T Consensus 254 ~s~~dv~~Fi~~~~~~~-~~~~~--------~~~L~~lT-~gvH~Hti~a~~~e~l~~i~~~L~~~G~L~~~ 315 (319)
T PRK12338 254 SDPDEAEKFIKRLNENP-KKKED--------LKRLYSLS-NNVHSHRICAPDEESLNRIIEELEEEGLLYEE 315 (319)
T ss_pred CCHHHHHHHHHHHhhCC-ccccc--------hhhHHHHh-CCeeEEEEEeCCHHHHHHHHHHHHHCCccccC
Confidence 38999999999997654 11000 11122222 23 2233579999999999999999986543
No 62
>PTZ00256 glutathione peroxidase; Provisional
Probab=21.20 E-value=2.5e+02 Score=22.53 Aligned_cols=66 Identities=14% Similarity=0.192 Sum_probs=37.5
Q ss_pred HHHhcCCCcEEEEEcCCCCeEEEeccCCCceEEEEEe------cHHHHHHHHHHHHhcCccccCCCeEEEEeechh
Q 028633 6 IEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNK 75 (206)
Q Consensus 6 I~ekL~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~ 75 (206)
|.-..+.+|-|+++|.+|+.+-.+.-.|...+.++++ +..+... |+++.+... +.|+.|..|+.+.
T Consensus 13 ~~~~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~-l~~l~~~~~---~~gv~vv~vs~~~ 84 (183)
T PTZ00256 13 IQPPTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQ-LVELYKQYK---SQGLEILAFPCNQ 84 (183)
T ss_pred ccCCCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHH-HHHHHHHHh---hCCcEEEEEeccc
Confidence 3334467999999999999887666544334333423 2333322 333333222 2258898888653
No 63
>PF12483 GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 150 and 163 amino acids in length. There is a single completely conserved residue E that may be functionally important. GIDE is an E3 ubiquitin ligase which is involved in inducing apoptosis. ; GO: 0016881 acid-amino acid ligase activity
Probab=20.92 E-value=1.4e+02 Score=23.53 Aligned_cols=43 Identities=16% Similarity=0.387 Sum_probs=31.0
Q ss_pred CCcEEEE----EcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhc
Q 028633 12 GVPVYAL----SNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSM 57 (206)
Q Consensus 12 ~VPVF~v----tn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~ 57 (206)
|-+||++ ++.+|.+.+..+.+++. .||++..+-++++++++..
T Consensus 96 G~~ltvvGe~~~~~~g~~~i~~p~~g~~---~f~iS~~s~~~l~~~~~~~ 142 (160)
T PF12483_consen 96 GTPLTVVGELVRDGDGNLVIQPPKDGGQ---PFFISTKSEEELIRSLRSS 142 (160)
T ss_pred CCEEEEEEEEEEcCCCcEEEeCCCCCCc---cEEEeCCCHHHHHHHHHHH
Confidence 5677776 46677676666554323 6889999999999998764
No 64
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=20.69 E-value=1.7e+02 Score=23.56 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=29.8
Q ss_pred CCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhc
Q 028633 22 NEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSM 57 (206)
Q Consensus 22 ~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~ 57 (206)
.|.|+++....|.+-+.++-.|++|--..+.|.|+.
T Consensus 91 ~gtPlvI~tKkGK~dv~f~vYsYdDHVDVVKQyKKK 126 (149)
T PF10787_consen 91 SGTPLVIDTKKGKKDVTFFVYSYDDHVDVVKQYKKK 126 (149)
T ss_pred CCCCEEEEeccCcceeEEEEEecccHHHHHHHhhhc
Confidence 488999998888888988888999988888887654
No 65
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=20.51 E-value=2e+02 Score=26.18 Aligned_cols=101 Identities=20% Similarity=0.308 Sum_probs=66.9
Q ss_pred CCceEEEEEecHHHH--HHHHHHHHhcCccccCCCeEEEEeechhhhhhc------cCCeeEEEecCHHHHHHHHHHHHH
Q 028633 33 TGKSLGLMCFKKEDA--EALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLK------VNGVAFRLIPESTQVKNALREMEK 104 (206)
Q Consensus 33 ~~~~v~~fF~~~~DA--~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~------~~~~~f~~vP~~~qv~~A~~l~~~ 104 (206)
+.+.+|++| ++.+| ...++++|+.-+ +.|++|...+-..+-++. ..+..--|+|.-..+..+-..+-+
T Consensus 158 nak~Igv~Y-~p~E~ns~~l~eelk~~A~---~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i~s~~~~l~~ 233 (322)
T COG2984 158 NAKSIGVLY-NPGEANSVSLVEELKKEAR---KAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLIVSAIESLLQ 233 (322)
T ss_pred CCeeEEEEe-CCCCcccHHHHHHHHHHHH---HCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchHHHHHHHHHHH
Confidence 348899886 55543 335556655422 226999988887776652 355666789999888888776544
Q ss_pred cCCCCCCCCCceeeeecceeEeeCCeeEeeeeecHHHHH
Q 028633 105 AGFSDDAFAGVPVFQSRSLVLRSQNKSYRPVFFRKEDLE 143 (206)
Q Consensus 105 ~g~~~~~f~gVPvF~~~~Lti~~~~~~~~PlFF~kedl~ 143 (206)
... ...+|||.++.=.+++|. ..-+.+++.|+=
T Consensus 234 ~a~----~~kiPli~sd~~~V~~Ga--~aA~gvdy~~~G 266 (322)
T COG2984 234 VAN----KAKIPLIASDTSSVKEGA--LAALGVDYKDLG 266 (322)
T ss_pred HHH----HhCCCeecCCHHHHhcCc--ceeeccCHHHHH
Confidence 322 358999999955554544 366888888843
Done!