BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028634
         (206 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P93788|REMO_SOLTU Remorin OS=Solanum tuberosum PE=1 SV=1
          Length = 198

 Score =  237 bits (604), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 145/211 (68%), Positives = 171/211 (81%), Gaps = 20/211 (9%)

Query: 1   MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDV-ADDKTVI-PS--PPAEDK--PE 54
           MAE E KK+E     +P PP      AP   E PK+V AD+K ++ P+  PPAE+K  P+
Sbjct: 1   MAELEAKKVEI---VDPAPP------APGPVEAPKEVVADEKAIVAPALPPPAEEKEKPD 51

Query: 55  ESKALAVVD-KAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENK 113
           +SKAL VV+ KAPE   PA EK  EGS++RDAVLARV TEKR+SLI+AWEESEKS+AENK
Sbjct: 52  DSKALVVVETKAPE---PADEKK-EGSIDRDAVLARVATEKRVSLIKAWEESEKSKAENK 107

Query: 114 AHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIE 173
           A KK+S+I +WENS+KA +EAELKK+EEQLEKKKAEY EKMKNK+AL+HKEAEEKRAMIE
Sbjct: 108 AQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIE 167

Query: 174 AKRGEDLLKAEELAAKYRATGSAPKKLLSCF 204
           AKRGEDLLKAEELAAKYRATG+APKK+L  F
Sbjct: 168 AKRGEDLLKAEELAAKYRATGTAPKKILGIF 198


>sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260 OS=Arabidopsis thaliana
           GN=At3g61260 PE=1 SV=1
          Length = 212

 Score =  199 bits (507), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 111/170 (65%), Positives = 133/170 (78%), Gaps = 4/170 (2%)

Query: 35  KDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEK 94
           KDVA++K  I +PP E   ++SKAL VV+K    E PA  K    S++RD  LA +  EK
Sbjct: 47  KDVAEEK--IQNPPPEQIFDDSKALTVVEKP--VEEPAPAKPASASLDRDVKLADLSKEK 102

Query: 95  RISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKM 154
           R+S +RAWEESEKS+AENKA KK++ + +WENS+KAAVEA+LKKIEEQLEKKKAEY E+M
Sbjct: 103 RLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERM 162

Query: 155 KNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 204
           KNK+A IHKEAEE+RAMIEAKRGED+LKAEE AAKYRATG  PK    CF
Sbjct: 163 KNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212


>sp|O80837|REMO_ARATH Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1
          Length = 190

 Score =  180 bits (457), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 118/205 (57%), Positives = 149/205 (72%), Gaps = 16/205 (7%)

Query: 1   MAEEE-PKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKAL 59
           MAEE+   K++ E+P    P     PA       P +VAD+K  I +PP    P ESKAL
Sbjct: 1   MAEEQKTSKVDVESPAVLAPAKEPTPA-------PVEVADEK--IHNPP----PVESKAL 47

Query: 60  AVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLS 119
           AVV+K  E   P  +K++ GS +RD +LA +E EK+ S I+AWEESEKS+AEN+A KK+S
Sbjct: 48  AVVEKPIEEHTP--KKASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKIS 105

Query: 120 SIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGED 179
            + +WENS+KAAVEA+L+KIEE+LEKKKA+Y EKMKNK+A IHK AEEKRAM+EAK+GE+
Sbjct: 106 DVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEE 165

Query: 180 LLKAEELAAKYRATGSAPKKLLSCF 204
           LLKAEE+ AKYRATG  PK    CF
Sbjct: 166 LLKAEEMGAKYRATGVVPKATCGCF 190


>sp|A0R006|WAG31_MYCS2 Cell wall synthesis protein Wag31 OS=Mycobacterium smegmatis
           (strain ATCC 700084 / mc(2)155) GN=wag31 PE=1 SV=1
          Length = 272

 Score = 33.9 bits (76), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 15/152 (9%)

Query: 12  ETPTEPPPPPSTEPAAPAA--AEPPKDVADDKTVIPSPPAEDKPEESKALA---VVDKAP 66
           E P +P  P S + A  AA      +D AD  T      A+    +++A A   V D   
Sbjct: 96  EAPAQPAAPQSEDTAVRAARVLSLAQDTADRLTSTAKAEADKLLSDARAQAEAMVSDARQ 155

Query: 67  EAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWEN 126
            AE    E         DA+LA  +T     L +A E+++  QA+  A +K S I+   N
Sbjct: 156 TAETTVSEARQRA----DAMLADAQTRSEAQLRQAQEKADALQAD--AERKHSEIMGTIN 209

Query: 127 SRKAAVEAELKKIEEQLEKKKAEYVEKMKNKM 158
            ++  +E  L    EQL   + EY  ++K  +
Sbjct: 210 QQRTVLEGRL----EQLRTFEREYRTRLKTYL 237


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.301    0.119    0.318 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,176,732
Number of Sequences: 539616
Number of extensions: 3619795
Number of successful extensions: 52818
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 2664
Number of HSP's that attempted gapping in prelim test: 34717
Number of HSP's gapped (non-prelim): 13797
length of query: 206
length of database: 191,569,459
effective HSP length: 112
effective length of query: 94
effective length of database: 131,132,467
effective search space: 12326451898
effective search space used: 12326451898
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 58 (26.9 bits)