Query 028634
Match_columns 206
No_of_seqs 138 out of 218
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 14:35:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03763 Remorin_C: Remorin, C 100.0 6.7E-38 1.4E-42 246.3 15.5 109 92-200 2-110 (111)
2 PF03766 Remorin_N: Remorin, N 99.3 4.3E-12 9.3E-17 90.2 3.8 52 35-90 5-57 (57)
3 PF03763 Remorin_C: Remorin, C 96.9 0.026 5.6E-07 44.8 11.6 81 90-170 22-102 (111)
4 KOG4661 Hsp27-ERE-TATA-binding 70.5 32 0.00069 35.3 9.3 84 90-173 609-705 (940)
5 PRK09174 F0F1 ATP synthase sub 69.9 73 0.0016 27.5 12.6 74 110-184 82-155 (204)
6 PRK13454 F0F1 ATP synthase sub 59.7 1E+02 0.0023 25.8 10.5 38 131-168 80-117 (181)
7 cd03404 Band_7_HflK Band_7_Hfl 49.7 1.4E+02 0.003 25.7 8.7 52 141-192 190-241 (266)
8 TIGR01933 hflK HflK protein. H 44.8 2E+02 0.0044 24.7 9.8 52 140-191 162-213 (261)
9 PF07352 Phage_Mu_Gam: Bacteri 41.4 1.6E+02 0.0034 23.9 7.3 41 102-142 14-54 (149)
10 KOG1103 Predicted coiled-coil 38.8 3.9E+02 0.0085 26.3 10.5 48 121-168 154-211 (561)
11 PRK13455 F0F1 ATP synthase sub 36.4 2.5E+02 0.0054 23.3 10.5 62 110-172 56-117 (184)
12 PF11559 ADIP: Afadin- and alp 35.7 1.2E+02 0.0027 24.1 5.8 16 112-127 80-95 (151)
13 PF10376 Mei5: Double-strand r 35.5 3.1E+02 0.0068 24.2 10.1 58 118-176 130-187 (221)
14 PRK14474 F0F1 ATP synthase sub 35.0 3.2E+02 0.007 24.2 10.2 26 136-161 77-102 (250)
15 PRK07353 F0F1 ATP synthase sub 34.6 2.2E+02 0.0048 22.2 10.2 12 136-147 59-70 (140)
16 KOG3654 Uncharacterized CH dom 34.6 1.2E+02 0.0027 30.8 6.6 42 124-176 397-440 (708)
17 PRK14475 F0F1 ATP synthase sub 33.3 2.7E+02 0.0059 22.8 10.5 13 138-150 66-78 (167)
18 PF11554 DUF3232: Protein of u 32.1 2.5E+02 0.0055 23.9 7.2 58 108-168 51-108 (152)
19 COG5269 ZUO1 Ribosome-associat 31.6 3.9E+02 0.0084 25.4 9.0 60 109-168 233-292 (379)
20 PRK14471 F0F1 ATP synthase sub 30.6 2.9E+02 0.0063 22.3 10.2 6 102-107 48-53 (164)
21 KOG0996 Structural maintenance 30.0 8.3E+02 0.018 27.4 12.8 90 109-204 532-622 (1293)
22 KOG0577 Serine/threonine prote 28.8 5.1E+02 0.011 27.4 9.9 81 100-180 816-900 (948)
23 PRK13428 F0F1 ATP synthase sub 28.0 5.5E+02 0.012 24.7 10.2 75 121-195 26-103 (445)
24 PRK13665 hypothetical protein; 26.9 1.7E+02 0.0036 27.5 5.7 25 127-151 234-258 (316)
25 PRK14475 F0F1 ATP synthase sub 26.9 3.5E+02 0.0077 22.1 10.2 28 154-181 104-131 (167)
26 PF12127 YdfA_immunity: SigmaW 26.5 1.6E+02 0.0035 27.7 5.6 24 127-150 229-252 (316)
27 PF09755 DUF2046: Uncharacteri 26.4 5.5E+02 0.012 24.2 11.5 65 105-169 91-155 (310)
28 PRK14472 F0F1 ATP synthase sub 26.3 3.7E+02 0.008 22.1 10.2 75 121-195 43-120 (175)
29 PF12856 Apc9: Anaphase-promot 23.9 59 0.0013 25.7 2.0 22 94-115 44-65 (100)
30 PF11875 DUF3395: Domain of un 23.8 3.8E+02 0.0082 22.0 6.9 39 141-179 9-47 (151)
31 CHL00118 atpG ATP synthase CF0 23.6 4E+02 0.0086 21.5 10.2 75 121-195 47-124 (156)
32 KOG4326 Mitochondrial F1F0-ATP 21.7 3.7E+02 0.0081 20.5 6.0 25 112-136 32-56 (81)
33 PRK00247 putative inner membra 21.0 7.9E+02 0.017 24.0 12.7 26 92-117 284-309 (429)
34 PRK10930 FtsH protease regulat 21.0 6.2E+02 0.013 24.4 8.6 56 135-190 253-308 (419)
35 cd07663 BAR_SNX5 The Bin/Amphi 20.7 6E+02 0.013 22.5 13.6 46 83-130 116-161 (218)
No 1
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=100.00 E-value=6.7e-38 Score=246.35 Aligned_cols=109 Identities=54% Similarity=0.746 Sum_probs=106.0
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028634 92 TEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAM 171 (206)
Q Consensus 92 ~ekr~s~a~AWEeaEkaK~~nR~~reeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~ 171 (206)
.+.+++++++||+++++|+++||+|++++|++|||+|+++|+++|+++|++||++|++++|||+|+|++||++|+++|++
T Consensus 2 ~~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~ 81 (111)
T PF03763_consen 2 KEEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAA 81 (111)
T ss_pred cHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhhcCCCCCCC
Q 028634 172 IEAKRGEDLLKAEELAAKYRATGSAPKKL 200 (206)
Q Consensus 172 aEAkr~ee~~Ka~EkA~k~R~TGk~P~~~ 200 (206)
++++|+++++++.++|++||+||++|++|
T Consensus 82 aea~r~~~~~k~~ekA~~~R~tG~~P~~~ 110 (111)
T PF03763_consen 82 AEARRGEEIAKAEEKAAKIRATGKVPSKC 110 (111)
T ss_pred HHHHHhhHHHhHHHHHHHHHhCCCCCccc
Confidence 99999999999999999999999999863
No 2
>PF03766 Remorin_N: Remorin, N-terminal region ; InterPro: IPR005518 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=99.26 E-value=4.3e-12 Score=90.22 Aligned_cols=52 Identities=67% Similarity=1.069 Sum_probs=44.5
Q ss_pred CCccccCCCCCCCCCCCCCccccceeeecCC-CCCCCCCCCCCCCCCchhHHHHHHH
Q 028634 35 KDVADDKTVIPSPPAEDKPEESKALAVVDKA-PEAEPPAGEKSTEGSVNRDAVLARV 90 (206)
Q Consensus 35 ~~~~~~~~~~p~p~~~~~~~~sk~l~~v~~~-~~~~~~~~~~~~~gs~~rd~~l~rv 90 (206)
+|++++++++|||. +...||||||+||++. ++ +..+++++||+|||++|++|
T Consensus 5 ~dva~ek~~~PpP~-~~k~ddSKAl~vVek~~~e---pa~eK~s~GS~dRDa~LA~v 57 (57)
T PF03766_consen 5 KDVAEEKSVIPPPA-EEKPDDSKALVVVEKKVPE---PAEEKPSEGSIDRDAALARV 57 (57)
T ss_pred hhhccccCCCCCCC-CCCCCccceEEEeeccCCC---ccccccCCCcchhhhhhhcC
Confidence 78999999988775 6778999999999985 45 46678889999999999985
No 3
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=96.89 E-value=0.026 Score=44.80 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=65.1
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028634 90 VETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKR 169 (206)
Q Consensus 90 v~~ekr~s~a~AWEeaEkaK~~nR~~reeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekR 169 (206)
-..++.++.|.+||..+++|+....++.+.++.-=-..---+..-.|..+..+.|.+|+.+..+-.+.+..+..+|.-.|
T Consensus 22 ~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~aea~r~~~~~k~~ekA~~~R 101 (111)
T PF03763_consen 22 NRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAAAEARRGEEIAKAEEKAAKIR 101 (111)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHH
Confidence 34566789999999999999999999999876432222233445566778899999999999999999999999998887
Q ss_pred H
Q 028634 170 A 170 (206)
Q Consensus 170 A 170 (206)
.
T Consensus 102 ~ 102 (111)
T PF03763_consen 102 A 102 (111)
T ss_pred h
Confidence 5
No 4
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=70.46 E-value=32 Score=35.34 Aligned_cols=84 Identities=24% Similarity=0.310 Sum_probs=52.2
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHhhhhHHhHHhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHH
Q 028634 90 VETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIE-------------EQLEKKKAEYVEKMKN 156 (206)
Q Consensus 90 v~~ekr~s~a~AWEeaEkaK~~nR~~reeakI~aWEn~qKAKAEA~mrKiE-------------~KLEkkRA~a~EKm~N 156 (206)
+.++++.-.-..-+--+...+..+-.+++..-.+||...+...++++-++| +.||++|.+.++--..
T Consensus 609 ~sfdk~kE~Rr~Re~eer~RirE~rerEqR~~a~~ERee~eRl~~erlrle~qRQrLERErmErERLEreRM~ve~eRr~ 688 (940)
T KOG4661|consen 609 RSFDKRKEERRRREAEERQRIREEREREQRRKAAVEREELERLKAERLRLERQRQRLERERMERERLERERMKVEEERRD 688 (940)
T ss_pred hhHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444333344455577788888888888889999999888887776666 3344445455554445
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028634 157 KMALIHKEAEEKRAMIE 173 (206)
Q Consensus 157 KiA~a~kkAEekRA~aE 173 (206)
.-.+||+.-++-|-+-+
T Consensus 689 eqeRihreReelRrqqe 705 (940)
T KOG4661|consen 689 EQERIHREREELRRQQE 705 (940)
T ss_pred hhhhhhhhHHHHhhccc
Confidence 55555555555544433
No 5
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=69.88 E-value=73 Score=27.52 Aligned_cols=74 Identities=22% Similarity=0.230 Sum_probs=41.0
Q ss_pred HHHHHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 028634 110 AENKAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAE 184 (206)
Q Consensus 110 ~~nR~~reeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEAkr~ee~~Ka~ 184 (206)
+..|.++-...|..=++ .+..++..+...|.+|..-|.++.+-+.+-...++..++..+..+++.-......+.
T Consensus 82 Le~R~~~I~~~L~~Ae~-~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae 155 (204)
T PRK09174 82 IETRRDRIAQDLDQAAR-LKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAE 155 (204)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554555544433 234566666667777777777766666666666666555555555544433333333
No 6
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=59.75 E-value=1e+02 Score=25.78 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028634 131 AVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEK 168 (206)
Q Consensus 131 KAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEek 168 (206)
.++..+...|.+|.+-|.++.+-+.+-...+.+..++.
T Consensus 80 eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~ 117 (181)
T PRK13454 80 KAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVA 117 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433333333333
No 7
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=49.67 E-value=1.4e+02 Score=25.74 Aligned_cols=52 Identities=19% Similarity=0.132 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 028634 141 EQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRA 192 (206)
Q Consensus 141 ~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEAkr~ee~~Ka~EkA~k~R~ 192 (206)
.+.++.++++...-...+..++..|+..+..+++.+.....+++-.+..|+.
T Consensus 190 q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~ 241 (266)
T cd03404 190 QDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFES 241 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3345555555443444668888888999999999999999988877777663
No 8
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=44.81 E-value=2e+02 Score=24.71 Aligned_cols=52 Identities=12% Similarity=0.074 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 028634 140 EEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYR 191 (206)
Q Consensus 140 E~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEAkr~ee~~Ka~EkA~k~R 191 (206)
+...++.++++...-...+..+...|+..+..+++.+..+..+++-.|..++
T Consensus 162 ~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~ 213 (261)
T TIGR01933 162 REDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFT 213 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3334666777755555556777777777777777777777777765555544
No 9
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=41.40 E-value=1.6e+02 Score=23.85 Aligned_cols=41 Identities=17% Similarity=0.308 Sum_probs=26.6
Q ss_pred HHHHHHhHHHHHHHHhhhhHHhHHhhHHHHHHHHHHHHHHH
Q 028634 102 WEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIEEQ 142 (206)
Q Consensus 102 WEeaEkaK~~nR~~reeakI~aWEn~qKAKAEA~mrKiE~K 142 (206)
.-..+...+.+.++.+.+.|..|-..+.+.....+..++.-
T Consensus 14 ~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~ 54 (149)
T PF07352_consen 14 ELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGL 54 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777777777766666666655533
No 10
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=38.80 E-value=3.9e+02 Score=26.26 Aligned_cols=48 Identities=31% Similarity=0.254 Sum_probs=38.0
Q ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Q 028634 121 IVSWENSRKAAVEAELKKIEEQLEKKKAEYV----------EKMKNKMALIHKEAEEK 168 (206)
Q Consensus 121 I~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~----------EKm~NKiA~a~kkAEek 168 (206)
-..+|-.++-|+|-.-+|+++.|+..|.+-- .++.||++....+|++-
T Consensus 154 QiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei 211 (561)
T KOG1103|consen 154 QIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEI 211 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3468889999999999999999987775532 46778888888888764
No 11
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=36.40 E-value=2.5e+02 Score=23.27 Aligned_cols=62 Identities=11% Similarity=0.077 Sum_probs=30.7
Q ss_pred HHHHHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028634 110 AENKAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMI 172 (206)
Q Consensus 110 ~~nR~~reeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~a 172 (206)
+.+|-++-...|..=+. .+..|+..+...+.+|..-|.++.+-+.+-...++...++.+..+
T Consensus 56 L~~R~~~I~~~l~~Ae~-~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a 117 (184)
T PRK13455 56 LDKRAEGIRSELEEARA-LREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADL 117 (184)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455554444444333 234455555555666666665555555554444444444444333
No 12
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=35.67 E-value=1.2e+02 Score=24.14 Aligned_cols=16 Identities=13% Similarity=0.086 Sum_probs=6.7
Q ss_pred HHHHHhhhhHHhHHhh
Q 028634 112 NKAHKKLSSIVSWENS 127 (206)
Q Consensus 112 nR~~reeakI~aWEn~ 127 (206)
.+....+..+.++++.
T Consensus 80 ~~~~~~ere~~~~~~~ 95 (151)
T PF11559_consen 80 EQLEELERELASAEEK 95 (151)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444443
No 13
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=35.51 E-value=3.1e+02 Score=24.20 Aligned_cols=58 Identities=17% Similarity=0.152 Sum_probs=47.1
Q ss_pred hhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028634 118 LSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKR 176 (206)
Q Consensus 118 eakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEAkr 176 (206)
+-.++.|+. .+++.+.+++..+..|.+...--+.+++|.+..++..-.++|...+..-
T Consensus 130 ~~~~~el~~-ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l 187 (221)
T PF10376_consen 130 ELKQQELEE-EKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEAL 187 (221)
T ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 445667766 5678888888899999999998999999999999999999987765543
No 14
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=35.01 E-value=3.2e+02 Score=24.17 Aligned_cols=26 Identities=8% Similarity=0.316 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028634 136 LKKIEEQLEKKKAEYVEKMKNKMALI 161 (206)
Q Consensus 136 mrKiE~KLEkkRA~a~EKm~NKiA~a 161 (206)
+.......++.|.+.++..+..+..+
T Consensus 77 i~~A~~eA~~~~~~il~~A~~ea~~~ 102 (250)
T PRK14474 77 MAQAQEAADEQRQHLLNEAREDVATA 102 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333
No 15
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=34.64 E-value=2.2e+02 Score=22.17 Aligned_cols=12 Identities=25% Similarity=0.335 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 028634 136 LKKIEEQLEKKK 147 (206)
Q Consensus 136 mrKiE~KLEkkR 147 (206)
+...+.+|..-|
T Consensus 59 ~~~~e~~L~~a~ 70 (140)
T PRK07353 59 EAQYEQQLASAR 70 (140)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 16
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=34.61 E-value=1.2e+02 Score=30.75 Aligned_cols=42 Identities=36% Similarity=0.466 Sum_probs=23.6
Q ss_pred HHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028634 124 WENSRKAAVEAELKK--IEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKR 176 (206)
Q Consensus 124 WEn~qKAKAEA~mrK--iE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEAkr 176 (206)
.|..|+-.-|+.+|| +|.+.|.+|-+ ++++|+|-|+..|..+
T Consensus 397 lekqqrraeear~rkqqleae~e~kree-----------arrkaeeer~~keee~ 440 (708)
T KOG3654|consen 397 LEKQQRRAEEARRRKQQLEAEKEQKREE-----------ARRKAEEERAPKEEEV 440 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhHhhhcchhhhh
Confidence 345555555666655 45566666644 4566666666555443
No 17
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=33.28 E-value=2.7e+02 Score=22.78 Aligned_cols=13 Identities=8% Similarity=0.228 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 028634 138 KIEEQLEKKKAEY 150 (206)
Q Consensus 138 KiE~KLEkkRA~a 150 (206)
..+.+|..-|.++
T Consensus 66 ~~e~~L~~A~~ea 78 (167)
T PRK14475 66 DVKAEREEAERQA 78 (167)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 18
>PF11554 DUF3232: Protein of unknown function (DUF3232); InterPro: IPR021618 This bacterial family of proteins has no known function. ; PDB: 2RDC_A.
Probab=32.07 E-value=2.5e+02 Score=23.88 Aligned_cols=58 Identities=10% Similarity=0.229 Sum_probs=49.4
Q ss_pred hHHHHHHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028634 108 SQAENKAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEK 168 (206)
Q Consensus 108 aK~~nR~~reeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEek 168 (206)
.++-.+.-+++..|+.|-+..-. .++|-+-++|++.|..+++-+-+.+..++|-|+-.
T Consensus 51 ~~Y~~~V~~mE~~l~t~rfrleg---eeYRd~vE~LDr~RtnaH~a~ISd~kIlNR~aek~ 108 (152)
T PF11554_consen 51 KEYVLIVYRMEDQLQTWRFRLEG---EEYRDLVEELDRTRTNAHNAAISDCKILNRMAEKE 108 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCCTS-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56777788999999999987654 57888999999999999999999999999988754
No 19
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=31.58 E-value=3.9e+02 Score=25.40 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=34.9
Q ss_pred HHHHHHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028634 109 QAENKAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEK 168 (206)
Q Consensus 109 K~~nR~~reeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEek 168 (206)
|...--.+++.+|..||-.--+.+++.+...-..-++.|+...-.-.--+..+.++|.|-
T Consensus 233 K~fkEqeK~~k~~rkWereagar~~a~aa~k~kae~k~kae~ea~a~asa~a~kkkaKE~ 292 (379)
T COG5269 233 KSFKEQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEV 292 (379)
T ss_pred hhHHHHHHHHHHHhccchhhhhhHHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHhHHHH
Confidence 444444577888999998877766655443322223555555555555555555555543
No 20
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=30.60 E-value=2.9e+02 Score=22.32 Aligned_cols=6 Identities=17% Similarity=0.302 Sum_probs=2.5
Q ss_pred HHHHHH
Q 028634 102 WEESEK 107 (206)
Q Consensus 102 WEeaEk 107 (206)
.++++.
T Consensus 48 l~~A~~ 53 (164)
T PRK14471 48 LASAEE 53 (164)
T ss_pred HHHHHH
Confidence 444443
No 21
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.97 E-value=8.3e+02 Score=27.37 Aligned_cols=90 Identities=17% Similarity=0.338 Sum_probs=54.7
Q ss_pred HHHHHHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHH
Q 028634 109 QAENKAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIE-AKRGEDLLKAEELA 187 (206)
Q Consensus 109 K~~nR~~reeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aE-Akr~ee~~Ka~EkA 187 (206)
...+.++.....|.+|...= -....+++.++.+|++.|..... ++..+...+.++++++.... .+-.++++.+ -
T Consensus 532 ~~~~~~~e~~~~l~~~k~~l-~~~k~e~~~~~k~l~~~~~e~~~-~~~~~~~~rqrveE~ks~~~~~~s~~kVl~a---l 606 (1293)
T KOG0996|consen 532 ASSESLKEKKTELDDLKEEL-PSLKQELKEKEKELPKLRKEERN-LKSQLNKLRQRVEEAKSSLSSSRSRNKVLDA---L 606 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH---H
Confidence 33445666666666665321 12334677778888888776555 44455667777888887444 4445555543 4
Q ss_pred HHHhhcCCCCCCCcCcc
Q 028634 188 AKYRATGSAPKKLLSCF 204 (206)
Q Consensus 188 ~k~R~TGk~P~~~~gCF 204 (206)
-.+...|++|+ |+|-.
T Consensus 607 ~r~kesG~i~G-f~GRL 622 (1293)
T KOG0996|consen 607 MRLKESGRIPG-FYGRL 622 (1293)
T ss_pred HHHHHcCCCCc-ccccc
Confidence 45568899987 45543
No 22
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.80 E-value=5.1e+02 Score=27.45 Aligned_cols=81 Identities=12% Similarity=0.238 Sum_probs=60.2
Q ss_pred HHHHHHHHhHHHHHHHHhhhhHHhHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028634 100 RAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIE----EQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAK 175 (206)
Q Consensus 100 ~AWEeaEkaK~~nR~~reeakI~aWEn~qKAKAEA~mrKiE----~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEAk 175 (206)
+.|.++|---+....+.+..-+.++.+.-|+.++.+..+.= ..+--.|+-.-+||-..++.++..--++--+...+
T Consensus 816 de~qe~E~q~l~~ql~qEle~l~ayq~k~k~~~e~q~~re~~ele~rvslrra~lEqkieeE~~~~~~~Rserir~l~er 895 (948)
T KOG0577|consen 816 DEAQEAECQVLREQLEQELELLNAYQSKIKMQAEEQHERELRELEQRVSLRRALLEQKIEEELAQLQTERSERIRSLLER 895 (948)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccchHHHHHHhhh
Confidence 67889998999999999999999999999998887765554 44445688888888888887765544443455555
Q ss_pred hhhhH
Q 028634 176 RGEDL 180 (206)
Q Consensus 176 r~ee~ 180 (206)
+..++
T Consensus 896 ~~~e~ 900 (948)
T KOG0577|consen 896 HAREI 900 (948)
T ss_pred hHHHH
Confidence 44443
No 23
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=28.04 E-value=5.5e+02 Score=24.67 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHhHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCC
Q 028634 121 IVSWENSRKAAVEAELKKIE---EQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGS 195 (206)
Q Consensus 121 I~aWEn~qKAKAEA~mrKiE---~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEAkr~ee~~Ka~EkA~k~R~TGk 195 (206)
|...=+..+.+....|...+ .+++..+..|.+++.+--..++.+-++.+..++..+.+-...+.+.+..+...++
T Consensus 26 i~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~ 103 (445)
T PRK13428 26 VRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGA 103 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 24
>PRK13665 hypothetical protein; Provisional
Probab=26.95 E-value=1.7e+02 Score=27.53 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 028634 127 SRKAAVEAELKKIEEQLEKKKAEYV 151 (206)
Q Consensus 127 ~qKAKAEA~mrKiE~KLEkkRA~a~ 151 (206)
+|-.+||+.++-.+.|.|.+|+-+.
T Consensus 234 Lq~dQAEADk~iAqAkAEeRRAmAv 258 (316)
T PRK13665 234 LQTDQAEADKRIAQAKAEERRAMAV 258 (316)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677766666666666665544
No 25
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=26.88 E-value=3.5e+02 Score=22.09 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028634 154 MKNKMALIHKEAEEKRAMIEAKRGEDLL 181 (206)
Q Consensus 154 m~NKiA~a~kkAEekRA~aEAkr~ee~~ 181 (206)
....+..++...+..|..+...-..++.
T Consensus 104 a~~~~~~A~~~I~~e~~~a~~el~~e~~ 131 (167)
T PRK14475 104 IKRRAEMAERKIAQAEAQAAADVKAAAV 131 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334333333333333
No 26
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=26.48 E-value=1.6e+02 Score=27.67 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 028634 127 SRKAAVEAELKKIEEQLEKKKAEY 150 (206)
Q Consensus 127 ~qKAKAEA~mrKiE~KLEkkRA~a 150 (206)
+|--+||+.++-.+.|.|.+|+-+
T Consensus 229 Lq~dQAeADk~iAqAkAEeRRA~A 252 (316)
T PF12127_consen 229 LQTDQAEADKRIAQAKAEERRAMA 252 (316)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556665555544444444433
No 27
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=26.38 E-value=5.5e+02 Score=24.16 Aligned_cols=65 Identities=22% Similarity=0.262 Sum_probs=43.2
Q ss_pred HHHhHHHHHHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028634 105 SEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKR 169 (206)
Q Consensus 105 aEkaK~~nR~~reeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekR 169 (206)
.++.-+...|++++..++-==..+-.+...+--.+|..|++.....+.+++.+|..+.+.-..+.
T Consensus 91 keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q 155 (310)
T PF09755_consen 91 KEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQ 155 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45556667888887777744444445555555566778888777778888888887765444333
No 28
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=26.25 E-value=3.7e+02 Score=22.07 Aligned_cols=75 Identities=21% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHhHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCC
Q 028634 121 IVSWENSRKAAVEAELKKIE---EQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGS 195 (206)
Q Consensus 121 I~aWEn~qKAKAEA~mrKiE---~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEAkr~ee~~Ka~EkA~k~R~TGk 195 (206)
|...=+..+.+....|...+ .+.+.....|-.++.+--..++.+-++.+..++..+.+....+.+.+..+....+
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~ 120 (175)
T PRK14472 43 ILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAK 120 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 29
>PF12856 Apc9: Anaphase-promoting complex subunit 9; InterPro: IPR024274 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. All APC subunits are members of the cullin family proteins, which bind to a ring-finger subunit via a conserved cullin domain [].The APC can be divided in four parts, the third of which is a tetratricopeptide repeat arm (TPR) that contains multiple subunits, including Apc9 []. This entry represents Apc9, one of the subunits of the anaphase-promoting complex.
Probab=23.95 E-value=59 Score=25.65 Aligned_cols=22 Identities=36% Similarity=0.379 Sum_probs=16.8
Q ss_pred HHHHhHHHHHHHHHhHHHHHHH
Q 028634 94 KRISLIRAWEESEKSQAENKAH 115 (206)
Q Consensus 94 kr~s~a~AWEeaEkaK~~nR~~ 115 (206)
-++|+|.+|+.+|++-.+-=|+
T Consensus 44 l~eSkI~~~l~sEra~h~liFh 65 (100)
T PF12856_consen 44 LRESKIKAWLSSERAAHCLIFH 65 (100)
T ss_pred HHHHHHHHHHHHHHHhcceecc
Confidence 5789999999999875544344
No 30
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=23.81 E-value=3.8e+02 Score=22.05 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028634 141 EQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGED 179 (206)
Q Consensus 141 ~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEAkr~ee 179 (206)
.++++.|....+.+..+.+.+...-+.|+..++.++..+
T Consensus 9 ~~~~~~r~~~~~~~~~~r~eA~~~~~lm~~~a~r~~~~E 47 (151)
T PF11875_consen 9 REIEEQREKNKEEIAEKRAEAESAIELMKETAERKQRKE 47 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555555555555554444
No 31
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=23.62 E-value=4e+02 Score=21.54 Aligned_cols=75 Identities=11% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHhHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCC
Q 028634 121 IVSWENSRKAAVEAELKKIE---EQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGS 195 (206)
Q Consensus 121 I~aWEn~qKAKAEA~mrKiE---~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEAkr~ee~~Ka~EkA~k~R~TGk 195 (206)
|...=+..+.+....+...+ .+.+..+..|.+++.+--..++.+-+..+..++..+.+-...+.+.+..+...++
T Consensus 47 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~ 124 (156)
T CHL00118 47 LLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEAT 124 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 32
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=21.67 E-value=3.7e+02 Score=20.52 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=20.0
Q ss_pred HHHHHhhhhHHhHHhhHHHHHHHHH
Q 028634 112 NKAHKKLSSIVSWENSRKAAVEAEL 136 (206)
Q Consensus 112 nR~~reeakI~aWEn~qKAKAEA~m 136 (206)
++......+|..|+.++|+.+.+++
T Consensus 32 ~~l~~~~e~~Rei~a~eKav~da~~ 56 (81)
T KOG4326|consen 32 RQLREYHEDIREIDAHEKAVADAEE 56 (81)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhHHH
Confidence 4556667899999999999888764
No 33
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=21.01 E-value=7.9e+02 Score=24.02 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=14.2
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHh
Q 028634 92 TEKRISLIRAWEESEKSQAENKAHKK 117 (206)
Q Consensus 92 ~ekr~s~a~AWEeaEkaK~~nR~~re 117 (206)
.+.+.-....|-+-++.|-..+..|.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (429)
T PRK00247 284 KEHHAEQRAQYREKQKEKKAFLWTLR 309 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677666655555544443
No 34
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=20.95 E-value=6.2e+02 Score=24.40 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 028634 135 ELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKY 190 (206)
Q Consensus 135 ~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEAkr~ee~~Ka~EkA~k~ 190 (206)
.+...+...++.+.++...-..-+..++..|+.....|++.+...+++++-.|+.|
T Consensus 253 ~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF 308 (419)
T PRK10930 253 DAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARF 308 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34444455556666665555566678888888888888999988888888666553
No 35
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=20.72 E-value=6e+02 Score=22.54 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHhhhhHHhHHhhHHH
Q 028634 83 RDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKA 130 (206)
Q Consensus 83 rd~~l~rv~~ekr~s~a~AWEeaEkaK~~nR~~reeakI~aWEn~qKA 130 (206)
||..-.+--.-.|..-...|+.++++-...|++ ..+|..||+.++.
T Consensus 116 r~~~A~K~ll~rR~ral~~~e~A~~~L~KaR~k--~kev~~aE~~~~e 161 (218)
T cd07663 116 LNIEAAKDLLYRRARALADYENSNKALDKARLK--SKDVKQAEAHQQE 161 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHH
Confidence 444444444445666667788888777766763 5557777777664
Done!