Query 028634
Match_columns 206
No_of_seqs 138 out of 218
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 00:31:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 73.8 39 0.0013 28.3 13.0 7 199-205 200-206 (256)
2 3oja_B Anopheles plasmodium-re 34.7 2.5E+02 0.0087 25.2 11.6 48 151-198 539-586 (597)
3 3ljm_A Coil Ser L9C; de novo d 29.1 70 0.0024 19.3 3.5 22 123-144 2-25 (31)
4 3pzp_A DNA polymerase kappa; D 22.5 1.7E+02 0.0058 27.2 6.6 16 76-91 15-30 (517)
5 3mq9_A Bone marrow stromal ant 17.4 5.1E+02 0.017 22.6 15.2 38 139-176 430-470 (471)
6 3lvh_D LCB, clathrin light cha 17.1 3E+02 0.01 23.3 6.3 49 99-147 102-150 (205)
7 2eqb_B RAB guanine nucleotide 16.6 3.4E+02 0.012 20.3 11.6 38 125-162 38-75 (97)
8 3sjd_D Golgi to ER traffic pro 16.2 1.8E+02 0.0062 19.2 3.7 24 78-101 10-33 (46)
9 3viq_A SWI5-dependent recombin 14.9 4E+02 0.014 20.3 7.9 61 127-187 7-67 (122)
10 2rdc_A Uncharacterized protein 14.3 4.9E+02 0.017 21.0 7.0 56 108-166 52-107 (153)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=73.84 E-value=39 Score=28.30 Aligned_cols=7 Identities=29% Similarity=0.387 Sum_probs=5.4
Q ss_pred CCcCccC
Q 028634 199 KLLSCFG 205 (206)
Q Consensus 199 ~~~gCF~ 205 (206)
.|.|||-
T Consensus 200 ~C~GC~~ 206 (256)
T 3na7_A 200 ACGGCFI 206 (256)
T ss_dssp BCTTTCC
T ss_pred ccCCCCe
Confidence 4899994
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.70 E-value=2.5e+02 Score=25.18 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCCCC
Q 028634 151 VEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPK 198 (206)
Q Consensus 151 ~EKm~NKiA~a~kkAEekRA~aEAkr~ee~~Ka~EkA~k~R~TGk~P~ 198 (206)
.+.+++++..+.+.-++++.....-+.+-.....+.-..+..+..-|.
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 345557777777777777766665555544444556666666665554
No 3
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=29.10 E-value=70 Score=19.28 Aligned_cols=22 Identities=45% Similarity=0.810 Sum_probs=13.4
Q ss_pred hHHhhHH--HHHHHHHHHHHHHHH
Q 028634 123 SWENSRK--AAVEAELKKIEEQLE 144 (206)
Q Consensus 123 aWEn~qK--AKAEA~mrKiE~KLE 144 (206)
.||.+.| +..+.+|+-+|.+||
T Consensus 2 ewealekkcaalesklqalekkle 25 (31)
T 3ljm_A 2 EWEALEKKCAALESKLQALEKKLE 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666554 455666666666665
No 4
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=22.54 E-value=1.7e+02 Score=27.15 Aligned_cols=16 Identities=0% Similarity=0.106 Sum_probs=9.6
Q ss_pred CCCCCchhHHHHHHHH
Q 028634 76 STEGSVNRDAVLARVE 91 (206)
Q Consensus 76 ~~~gs~~rd~~l~rv~ 91 (206)
.+-.++|++.+-.-+.
T Consensus 15 ag~~~~d~~~i~~ii~ 30 (517)
T 3pzp_A 15 AGMEGLDKEKINKIIM 30 (517)
T ss_dssp CSCCSCCHHHHHHHHH
T ss_pred ccccccCHHHHHHHHH
Confidence 3445677776655554
No 5
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=17.40 E-value=5.1e+02 Score=22.63 Aligned_cols=38 Identities=16% Similarity=0.331 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Q 028634 139 IEEQLEKKKAEYVE---KMKNKMALIHKEAEEKRAMIEAKR 176 (206)
Q Consensus 139 iE~KLEkkRA~a~E---Km~NKiA~a~kkAEekRA~aEAkr 176 (206)
+..-||++.+.... .+-+.|...+++-++.+|.++..|
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 430 LMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44667777766543 344667777777777777776654
No 6
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=17.14 E-value=3e+02 Score=23.34 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=27.8
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHHHHH
Q 028634 99 IRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKK 147 (206)
Q Consensus 99 a~AWEeaEkaK~~nR~~reeakI~aWEn~qKAKAEA~mrKiE~KLEkkR 147 (206)
|..|-+..+..+..|-...+.+-..|...-+.-.+-+......+|+|-+
T Consensus 102 IRkWREEq~kRLeekDa~sekkk~E~rekAkKeLddwY~~yneqlEK~k 150 (205)
T 3lvh_D 102 IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 150 (205)
T ss_dssp HHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567666666666665555556666655555555555555555555433
No 7
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=16.56 E-value=3.4e+02 Score=20.28 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=33.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028634 125 ENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIH 162 (206)
Q Consensus 125 En~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~ 162 (206)
|..++..||....+|+..||-.=+.+.+--.+=++.++
T Consensus 38 E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar 75 (97)
T 2eqb_B 38 ENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADAR 75 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999998777666663
No 8
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=16.18 E-value=1.8e+02 Score=19.22 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=15.5
Q ss_pred CCCchhHHHHHHHHHHHHHHhHHH
Q 028634 78 EGSVNRDAVLARVETEKRISLIRA 101 (206)
Q Consensus 78 ~gs~~rd~~l~rv~~ekr~s~a~A 101 (206)
-||.-++.--+|+-+|+|.+++.+
T Consensus 10 ~~~~lsa~EkaRLrRERR~aKi~~ 33 (46)
T 3sjd_D 10 MGSELTEAEKRRLLRERRQKKFSN 33 (46)
T ss_dssp -----CHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHc
Confidence 466667778888999999877765
No 9
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=14.95 E-value=4e+02 Score=20.34 Aligned_cols=61 Identities=16% Similarity=0.140 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 028634 127 SRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELA 187 (206)
Q Consensus 127 ~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEAkr~ee~~Ka~EkA 187 (206)
.++.....+|+.++.+|+.-+....=.-.|+...+...-..+|.....--.+=...+.++.
T Consensus 7 ~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~aaeeLf~~~~~rv 67 (122)
T 3viq_A 7 SRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAEVLFKPMAERI 67 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788899999999998888777777777777777777788766554444444444443
No 10
>2rdc_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Geobacter sulfurreducens pca}
Probab=14.29 E-value=4.9e+02 Score=20.97 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=48.4
Q ss_pred hHHHHHHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028634 108 SQAENKAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAE 166 (206)
Q Consensus 108 aK~~nR~~reeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAE 166 (206)
.++-++.-+++..|+.|--..- -.++|-+-++|++.|..+++-+-..+..++|-++
T Consensus 52 ~~Y~~~V~~mE~~i~t~RfrlE---geEYRd~ve~LDrtR~~aH~a~ISs~kIiNR~~~ 107 (153)
T 2rdc_A 52 TRYFSKVVEMEHRMASARFRLD---GEELRELTETLDRSRRLAHESLISSLHVFNRYIV 107 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888999999999976543 3578889999999999999999999999998876
Done!