Query 028634
Match_columns 206
No_of_seqs 138 out of 218
Neff 4.1
Searched_HMMs 13730
Date Tue Mar 26 00:31:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028634.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028634hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2d4ca1 a.238.1.1 (A:11-247) E 10.9 2.6E+02 0.019 19.6 8.5 50 109-158 150-199 (237)
2 d1dfup_ b.53.1.1 (P:) Ribosoma 8.6 26 0.0019 23.7 -0.7 18 185-202 15-32 (94)
3 d1oaoc_ e.26.1.3 (C:) Bifuncti 6.9 59 0.0043 29.9 0.7 10 55-64 380-389 (729)
4 d1k78a2 a.4.1.5 (A:82-142) Pax 4.3 1.6E+02 0.012 18.8 1.5 19 111-129 18-36 (61)
5 d1t92a_ d.24.1.3 (A:) Pullulan 4.2 5.1E+02 0.037 17.2 4.4 23 127-149 6-28 (108)
6 d1zl8a1 a.194.1.1 (A:4-53) Lin 4.1 3.4E+02 0.025 16.5 2.8 23 177-199 3-25 (50)
7 d6paxa2 a.4.1.5 (A:69-133) Pax 3.9 1.8E+02 0.013 18.7 1.5 19 111-129 16-34 (65)
8 d1gph11 c.61.1.1 (1:235-465) G 3.4 73 0.0053 25.1 -1.2 7 200-206 203-209 (231)
9 d2clyb1 f.53.1.1 (B:4-123) ATP 3.4 5.5E+02 0.04 17.5 3.9 12 135-146 107-118 (120)
10 d2c0sa1 a.30.7.1 (A:1-57) Hypo 3.2 4.6E+02 0.034 16.3 2.9 17 136-152 3-19 (57)
No 1
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.94 E-value=2.6e+02 Score=19.64 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=35.2
Q ss_pred HHHHHHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028634 109 QAENKAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKM 158 (206)
Q Consensus 109 K~~nR~~reeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKi 158 (206)
+....|........++.+.....++.+|+..+.+++..+..+...|.+=+
T Consensus 150 ~~rk~~d~~~~~~~~~~~k~~~~~~e~l~~a~~~~e~~~~~~~~~l~~l~ 199 (237)
T d2d4ca1 150 HHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLL 199 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666666666678888888999998888888887643
No 2
>d1dfup_ b.53.1.1 (P:) Ribosomal protein L25 {Escherichia coli [TaxId: 562]}
Probab=8.65 E-value=26 Score=23.74 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=14.2
Q ss_pred HHHHHHhhcCCCCCCCcC
Q 028634 185 ELAAKYRATGSAPKKLLS 202 (206)
Q Consensus 185 EkA~k~R~TGk~P~~~~g 202 (206)
-.+.++|+.|.+|.-++|
T Consensus 15 ~~~r~lRr~G~vPaViYG 32 (94)
T d1dfup_ 15 GASRRLRAANKFPAIIYG 32 (94)
T ss_dssp HHHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHHcCCccEEEEC
Confidence 357799999999986554
No 3
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit {Moorella thermoacetica [TaxId: 1525]}
Probab=6.86 E-value=59 Score=29.93 Aligned_cols=10 Identities=10% Similarity=0.185 Sum_probs=5.5
Q ss_pred cccceeeecC
Q 028634 55 ESKALAVVDK 64 (206)
Q Consensus 55 ~sk~l~~v~~ 64 (206)
.+-+|.|+-+
T Consensus 380 ~~~Plgi~v~ 389 (729)
T d1oaoc_ 380 SKLPLGILVD 389 (729)
T ss_dssp EECCEEEEEE
T ss_pred CccceEEEEE
Confidence 4556666544
No 4
>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.29 E-value=1.6e+02 Score=18.77 Aligned_cols=19 Identities=11% Similarity=0.363 Sum_probs=15.2
Q ss_pred HHHHHHhhhhHHhHHhhHH
Q 028634 111 ENKAHKKLSSIVSWENSRK 129 (206)
Q Consensus 111 ~nR~~reeakI~aWEn~qK 129 (206)
...|+++.--|-+||=..+
T Consensus 18 I~~yK~enP~iFaWEIRd~ 36 (61)
T d1k78a2 18 IAEYKRQNPTMFAWEIRDR 36 (61)
T ss_dssp HHHHHHHCTTCCHHHHHHH
T ss_pred HHHHHhcCCcccHHHHHHH
Confidence 4579999999999996543
No 5
>d1t92a_ d.24.1.3 (A:) Pullulanase secretion protein PulG {Klebsiella pneumoniae [TaxId: 573]}
Probab=4.21 E-value=5.1e+02 Score=17.17 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 028634 127 SRKAAVEAELKKIEEQLEKKKAE 149 (206)
Q Consensus 127 ~qKAKAEA~mrKiE~KLEkkRA~ 149 (206)
.+..++.++|+.|+.-|+.-|..
T Consensus 6 Ak~~~a~~di~~i~~aL~~Y~~d 28 (108)
T d1t92a_ 6 ADRQKVVSDLVALEGALDMYKLD 28 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567778888888777765543
No 6
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=4.07 E-value=3.4e+02 Score=16.53 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCC
Q 028634 177 GEDLLKAEELAAKYRATGSAPKK 199 (206)
Q Consensus 177 ~ee~~Ka~EkA~k~R~TGk~P~~ 199 (206)
..++.++-|--.++.++|.+|..
T Consensus 3 ~rDv~RaieLle~Lq~sgevp~~ 25 (50)
T d1zl8a1 3 ERDVQRILELMEHVQKTGEVNNA 25 (50)
T ss_dssp HHHHHHHHHHHHHHGGGSSSTHH
T ss_pred hhHHHHHHHHHHHHHHcCCCChH
Confidence 35677788899999999999863
No 7
>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.88 E-value=1.8e+02 Score=18.74 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=15.3
Q ss_pred HHHHHHhhhhHHhHHhhHH
Q 028634 111 ENKAHKKLSSIVSWENSRK 129 (206)
Q Consensus 111 ~nR~~reeakI~aWEn~qK 129 (206)
...|+++.-.|-+||=..+
T Consensus 16 I~~yK~enP~iFaWEIRd~ 34 (65)
T d6paxa2 16 IAQYKQECPSIFAWEIRDR 34 (65)
T ss_dssp HHHHHHHCTTCCHHHHHHH
T ss_pred HHHHHHhCCccchHHHHHH
Confidence 4579999999999996544
No 8
>d1gph11 c.61.1.1 (1:235-465) Glutamine PRPP amidotransferase, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=3.39 E-value=73 Score=25.06 Aligned_cols=7 Identities=43% Similarity=1.018 Sum_probs=4.6
Q ss_pred CcCccCC
Q 028634 200 LLSCFGS 206 (206)
Q Consensus 200 ~~gCF~~ 206 (206)
|++||+|
T Consensus 203 C~aCFtG 209 (231)
T d1gph11 203 CLACFTG 209 (231)
T ss_dssp ECHHHHS
T ss_pred CCeeeCC
Confidence 6677764
No 9
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.37 E-value=5.5e+02 Score=17.54 Aligned_cols=12 Identities=33% Similarity=0.587 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 028634 135 ELKKIEEQLEKK 146 (206)
Q Consensus 135 ~mrKiE~KLEkk 146 (206)
.|..++.+|+++
T Consensus 107 rI~~lekeLe~i 118 (120)
T d2clyb1 107 RIQEYEKELEKM 118 (120)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 344455555544
No 10
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=3.16 E-value=4.6e+02 Score=16.27 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028634 136 LKKIEEQLEKKKAEYVE 152 (206)
Q Consensus 136 mrKiE~KLEkkRA~a~E 152 (206)
|++++..+|.||-+..+
T Consensus 3 ~~~L~~~IE~KK~eLi~ 19 (57)
T d2c0sa1 3 VTKLNDRIEAKKKELIY 19 (57)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Done!