BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028637
         (206 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8IZQ8|MYCD_HUMAN Myocardin OS=Homo sapiens GN=MYOCD PE=1 SV=1
          Length = 938

 Score = 32.0 bits (71), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 2   AEEKESTSIPLSQAENGGEDPEDPVKSPPTSSASST 37
           A E++S+S  LS  +   EDP++   SPP + AS T
Sbjct: 152 AFEEDSSSDGLSPDQTRSEDPQNSAGSPPDAKASDT 187


>sp|Q255P5|LPXB_CHLFF Lipid-A-disaccharide synthase OS=Chlamydophila felis (strain
           Fe/C-56) GN=lpxB PE=3 SV=1
          Length = 625

 Score = 30.8 bits (68), Expect = 5.9,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 20/74 (27%)

Query: 54  MTGCVVLFPVAVTFFITW---------------WFVQFVDGFFSPLY-----EHLGFDIF 93
           + GC+ LF  +  FFI W               W V F+ GF + LY     + +    +
Sbjct: 142 IAGCIGLFTFSSRFFIQWCHLEINNRSTLPALFWLVSFIGGFLAFLYFIRTGDPVNIISY 201

Query: 94  GLGFITSLVFVFLV 107
           G G + SL  + ++
Sbjct: 202 GCGLLPSLANLLII 215


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.137    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,953,218
Number of Sequences: 539616
Number of extensions: 2741792
Number of successful extensions: 10114
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 10103
Number of HSP's gapped (non-prelim): 28
length of query: 206
length of database: 191,569,459
effective HSP length: 112
effective length of query: 94
effective length of database: 131,132,467
effective search space: 12326451898
effective search space used: 12326451898
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)