Query 028637
Match_columns 206
No_of_seqs 108 out of 612
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 00:36:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d31_C Sulfate/molybdate ABC t 56.9 47 0.0016 27.5 8.3 42 94-135 92-135 (295)
2 2gww_B IPAA; protein complex, 30.0 23 0.00079 20.2 1.4 15 134-148 9-23 (30)
3 2rdd_B UPF0092 membrane protei 24.8 42 0.0014 20.0 2.0 18 56-73 2-19 (37)
4 1q90_G Cytochrome B6F complex 22.3 95 0.0032 18.9 3.2 21 94-114 6-26 (37)
5 3qf4_B Uncharacterized ABC tra 18.8 5.4E+02 0.018 23.5 10.1 8 40-47 23-30 (598)
6 3tj6_B Protein PS 120; cytoske 16.8 85 0.0029 17.2 1.9 14 135-148 2-15 (23)
7 2kih_A Matrix protein 2; S31N, 16.6 1.3E+02 0.0045 18.6 3.0 18 119-141 22-39 (43)
8 2l8s_A Integrin alpha-1; trans 14.7 2E+02 0.0068 18.8 3.7 23 49-71 12-34 (54)
9 1vf5_G Protein PET G; photosyn 13.4 99 0.0034 18.8 1.8 20 95-114 7-26 (37)
10 2knc_A Integrin alpha-IIB; tra 13.2 2.3E+02 0.0079 18.4 3.7 23 49-71 15-37 (54)
No 1
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=56.95 E-value=47 Score=27.51 Aligned_cols=42 Identities=12% Similarity=0.010 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHhhcchhhH
Q 028637 94 GLGFITSLVFVFLVGVFVSS--WLGSTVFWVGEWFIKRMPFVRH 135 (206)
Q Consensus 94 glgili~l~li~~vG~la~~--~~g~~i~~~~e~ll~rIPvV~s 135 (206)
..+.++.+++-+.+|++..+ ..++++++.+=.+..-+|.+-.
T Consensus 92 ~~~~~l~~~lg~~~a~~l~~~~~~~~~~~~~~~~~~~~iP~~v~ 135 (295)
T 3d31_C 92 FLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVA 135 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHGGGTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566666544 3456666666666667886543
No 2
>2gww_B IPAA; protein complex, cell adhesion, structural protein; 2.72A {Shigella flexneri}
Probab=30.03 E-value=23 Score=20.24 Aligned_cols=15 Identities=27% Similarity=0.691 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHhC
Q 028637 134 RHLYSASKQISAAIS 148 (206)
Q Consensus 134 ~sIY~siKqi~~~~~ 148 (206)
+.||++.||+..+++
T Consensus 9 nniykaakdvttsls 23 (30)
T 2gww_B 9 NNIYKAAKDVTTSLS 23 (30)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 468999999998876
No 3
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=24.81 E-value=42 Score=19.99 Aligned_cols=18 Identities=11% Similarity=0.218 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028637 56 GCVVLFPVAVTFFITWWF 73 (206)
Q Consensus 56 GLlvllPl~lTi~Il~wl 73 (206)
|+..++|+++.+.++||+
T Consensus 2 ~~~~~l~~v~~~~ifYFl 19 (37)
T 2rdd_B 2 PMSLILMLVVFGLIFYFM 19 (37)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 345566776666666554
No 4
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=22.32 E-value=95 Score=18.90 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q 028637 94 GLGFITSLVFVFLVGVFVSSW 114 (206)
Q Consensus 94 glgili~l~li~~vG~la~~~ 114 (206)
..|+++-++-+.++|+++..+
T Consensus 6 L~GIVlGlipvtlaGLfv~Ay 26 (37)
T 1q90_G 6 LCGIVLGLVPVTIAGLFVTAY 26 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHHHHHHHHHHHHH
Confidence 356777888888999987654
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=18.81 E-value=5.4e+02 Score=23.54 Aligned_cols=8 Identities=25% Similarity=-0.022 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 028637 40 ACCYVLQS 47 (206)
Q Consensus 40 ~~~~rl~~ 47 (206)
..+.++.+
T Consensus 23 ~~~~~l~~ 30 (598)
T 3qf4_B 23 ATLRRLLG 30 (598)
T ss_dssp HHHHHHGG
T ss_pred HHHHHHHH
Confidence 34444443
No 6
>3tj6_B Protein PS 120; cytoskeleton, epidemic typhus, SCA4, spotted fever, alpha-HE bundle domain, protein-protein interactions, cell adhesion; 2.76A {Rickettsia rickettsii}
Probab=16.78 E-value=85 Score=17.18 Aligned_cols=14 Identities=14% Similarity=0.581 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhC
Q 028637 135 HLYSASKQISAAIS 148 (206)
Q Consensus 135 sIY~siKqi~~~~~ 148 (206)
-||+..|++.+++-
T Consensus 2 DIynkaqdv~~AL~ 15 (23)
T 3tj6_B 2 DIYNKAREVINAVN 15 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 48999999988763
No 7
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=16.59 E-value=1.3e+02 Score=18.62 Aligned_cols=18 Identities=17% Similarity=0.689 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhcchhhHHHHHHH
Q 028637 119 VFWVGEWFIKRMPFVRHLYSASK 141 (206)
Q Consensus 119 i~~~~e~ll~rIPvV~sIY~siK 141 (206)
+++.+|++ ++|-||+-.|
T Consensus 22 iLwildRl-----ffkciyrrfk 39 (43)
T 2kih_A 22 ILWILDRL-----FFKSIYRFFE 39 (43)
T ss_dssp HHHHHHHH-----HCCCHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHh
Confidence 34455554 4567777665
No 8
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=14.68 E-value=2e+02 Score=18.82 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028637 49 ISKKFMTGCVVLFPVAVTFFITW 71 (206)
Q Consensus 49 l~~~FltGLlvllPl~lTi~Il~ 71 (206)
+.-..+.||+.++.++..+|=+.
T Consensus 12 Ii~svl~GLLLL~Lii~~LwK~G 34 (54)
T 2l8s_A 12 ILLSAFAGLLLLMLLILALWKIG 34 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 34567788888777766665444
No 9
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=13.40 E-value=99 Score=18.82 Aligned_cols=20 Identities=35% Similarity=0.673 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 028637 95 LGFITSLVFVFLVGVFVSSW 114 (206)
Q Consensus 95 lgili~l~li~~vG~la~~~ 114 (206)
.|+++-++-+.++|+++..+
T Consensus 7 ~GIVlGlipvtl~GLfv~Ay 26 (37)
T 1vf5_G 7 DGLVLGLVFATLGGLFYAAY 26 (37)
T ss_dssp --CHHHHHHHHHHHHTHHHH
T ss_pred hhHHHhhHHHHHHHHHHHHH
Confidence 45666777788888887654
No 10
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=13.17 E-value=2.3e+02 Score=18.43 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028637 49 ISKKFMTGCVVLFPVAVTFFITW 71 (206)
Q Consensus 49 l~~~FltGLlvllPl~lTi~Il~ 71 (206)
+.-..+.||+.+..++..+|=+.
T Consensus 15 Ii~svl~GLllL~li~~~LwK~G 37 (54)
T 2knc_A 15 VLVGVLGGLLLLTILVLAMWKVG 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 44557778887777766665443
Done!