Query 028637
Match_columns 206
No_of_seqs 108 out of 612
Neff 5.6
Searched_HMMs 13730
Date Tue Mar 26 00:36:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028637.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028637hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90g_ f.23.26.1 (G:) PetG su 22.7 48 0.0035 17.8 3.2 20 95-114 7-26 (30)
2 d2axti1 f.23.37.1 (I:1-35) Pho 15.6 90 0.0065 17.2 3.4 17 63-79 10-26 (35)
3 d3buxb3 d.93.1.1 (B:264-351) C 14.7 37 0.0027 22.6 1.8 37 137-179 11-49 (88)
4 d1xmaa_ a.4.5.61 (A:) Predicte 11.8 1.6E+02 0.011 19.1 4.7 43 104-146 10-55 (103)
5 d2j43a1 b.3.1.3 (A:5-111) Pull 11.7 1.3E+02 0.0096 20.1 4.3 27 154-180 49-75 (107)
6 d2j44a2 b.3.1.3 (A:7-109) Pull 8.5 2.1E+02 0.016 18.7 4.3 27 154-180 47-73 (103)
7 d2vv5a3 f.34.1.1 (A:27-112) Me 8.5 2.3E+02 0.017 17.3 5.3 16 104-119 11-26 (86)
8 d2axtl1 f.23.31.1 (L:1-37) Pho 8.2 1.8E+02 0.013 16.0 3.2 17 99-115 19-35 (37)
9 d1pw4a_ f.38.1.1 (A:) Glycerol 7.6 4E+02 0.029 19.5 9.0 14 101-114 73-86 (447)
10 d1l0qa1 b.1.3.1 (A:302-391) Su 7.4 2.1E+02 0.015 17.8 3.7 52 148-200 39-90 (90)
No 1
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=22.67 E-value=48 Score=17.77 Aligned_cols=20 Identities=35% Similarity=0.692 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 028637 95 LGFITSLVFVFLVGVFVSSW 114 (206)
Q Consensus 95 lgili~l~li~~vG~la~~~ 114 (206)
.|+++-++=+.+.|+++..+
T Consensus 7 ~GivlGlipiTl~Glfv~Ay 26 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGLFVTAY 26 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHHHHHHH
Confidence 46677777788888887654
No 2
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.65 E-value=90 Score=17.24 Aligned_cols=17 Identities=35% Similarity=0.841 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 028637 63 VAVTFFITWWFVQFVDG 79 (206)
Q Consensus 63 l~lTi~Il~wl~~~vd~ 79 (206)
.++++++..++|+++++
T Consensus 10 ~vV~fFv~lFiFGFLSn 26 (35)
T d2axti1 10 IVVTFFVLLFVFGFLSG 26 (35)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhhccC
Confidence 34555555555555543
No 3
>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.67 E-value=37 Score=22.56 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCCCCCcCcCcEEEEE--eCCCCeeEEEEEeccc
Q 028637 137 YSASKQISAAISPDQNTTAFKEVAIIR--HPRVGEYAFGFITSTV 179 (206)
Q Consensus 137 Y~siKqi~~~~~~~~~~~~f~~VVlVe--~P~~g~~~iGFvT~~~ 179 (206)
|.-+|.-.+.+..+. .+ -+.+ --|-|-|+||+||.+.
T Consensus 11 YDevk~rL~~~~~kP--GS----YiFRlSCTrlGQWAIGyvt~dg 49 (88)
T d3buxb3 11 YDEVKARLQKFIHKP--GS----YIFRLSCTRLGQWAIGYVTADG 49 (88)
T ss_dssp HHHHHHHHGGGTTST--TE----EEEEECSSSTTSEEEEEECTTS
T ss_pred HHHHHHHHHHHhcCC--Cc----eEEeeccccccceeeeeeccCC
Confidence 777787777776432 11 1222 2377999999999874
No 4
>d1xmaa_ a.4.5.61 (A:) Predicted transcriptional regulator {Clostridium thermocellum [TaxId: 1515]}
Probab=11.79 E-value=1.6e+02 Score=19.07 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=28.1
Q ss_pred HHHHHHHHHh-hhhhHHHHHHHHHHhhc--chhhHHHHHHHHHHHH
Q 028637 104 VFLVGVFVSS-WLGSTVFWVGEWFIKRM--PFVRHLYSASKQISAA 146 (206)
Q Consensus 104 i~~vG~la~~-~~g~~i~~~~e~ll~rI--PvV~sIY~siKqi~~~ 146 (206)
++++|++... .-|-.+.+.++...... +-.++||.++|++.+.
T Consensus 10 ~~IL~lL~~~~~~GYei~~~l~~~~~~~~~is~gslY~~L~rLe~~ 55 (103)
T d1xmaa_ 10 TIILSLLIEGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKN 55 (103)
T ss_dssp HHHHHHHHHCCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCccHHHHHHHHHHHcCCeecCCCCchHHHHHHHHHC
Confidence 3445666553 45555777777655432 3449999999999875
No 5
>d2j43a1 b.3.1.3 (A:5-111) Pullulanase PulA {Streptococcus pyogenes [TaxId: 1314]}
Probab=11.73 E-value=1.3e+02 Score=20.14 Aligned_cols=27 Identities=0% Similarity=-0.017 Sum_probs=21.9
Q ss_pred cCcCcEEEEEeCCCCeeEEEEEecccc
Q 028637 154 TAFKEVAIIRHPRVGEYAFGFITSTVT 180 (206)
Q Consensus 154 ~~f~~VVlVe~P~~g~~~iGFvT~~~~ 180 (206)
..|..++-|+++.++...+|||.....
T Consensus 49 D~yGay~~v~L~~~~~~~igfIV~~~~ 75 (107)
T d2j43a1 49 DDYGYYLDVPLAAKHRQQVSYLINNKA 75 (107)
T ss_dssp CSSSEEEEEEBCSSCCCEEEEEEEETT
T ss_pred cCceEEEEEEecCCCCceEEEEEEcCC
Confidence 458888899987677899999998653
No 6
>d2j44a2 b.3.1.3 (A:7-109) Pullulanase PulA {Streptococcus pneumoniae [TaxId: 1313]}
Probab=8.51 E-value=2.1e+02 Score=18.70 Aligned_cols=27 Identities=4% Similarity=0.057 Sum_probs=22.1
Q ss_pred cCcCcEEEEEeCCCCeeEEEEEecccc
Q 028637 154 TAFKEVAIIRHPRVGEYAFGFITSTVT 180 (206)
Q Consensus 154 ~~f~~VVlVe~P~~g~~~iGFvT~~~~ 180 (206)
..|..++-|+...++...++||..+..
T Consensus 47 D~yGay~~V~L~~~~~~~i~fIi~k~~ 73 (103)
T d2j44a2 47 DDYGYYLDVKLKGEQAKKISFLINNTA 73 (103)
T ss_dssp CSSSEEEEEEBCCSSCCEEEEEEEESS
T ss_pred CCCeeEEEEEecCCCCceEEEEEeCCC
Confidence 358888899998778899999997653
No 7
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=8.48 E-value=2.3e+02 Score=17.31 Aligned_cols=16 Identities=19% Similarity=0.642 Sum_probs=8.0
Q ss_pred HHHHHHHHHhhhhhHH
Q 028637 104 VFLVGVFVSSWLGSTV 119 (206)
Q Consensus 104 i~~vG~la~~~~g~~i 119 (206)
++.+|+...+++.+.+
T Consensus 11 il~i~~~i~~~i~~~~ 26 (86)
T d2vv5a3 11 IIIVGLIIARMISNAV 26 (86)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455665554444433
No 8
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.16 E-value=1.8e+02 Score=15.98 Aligned_cols=17 Identities=18% Similarity=0.598 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhhh
Q 028637 99 TSLVFVFLVGVFVSSWL 115 (206)
Q Consensus 99 i~l~li~~vG~la~~~~ 115 (206)
..+++++++|.+.+++.
T Consensus 19 ~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 19 LGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34566777787776653
No 9
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=7.57 E-value=4e+02 Score=19.47 Aligned_cols=14 Identities=14% Similarity=0.104 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhh
Q 028637 101 LVFVFLVGVFVSSW 114 (206)
Q Consensus 101 l~li~~vG~la~~~ 114 (206)
.+...+.|.+++++
T Consensus 73 ~~~~~~~G~l~Dr~ 86 (447)
T d1pw4a_ 73 GFSKFIMGSVSDRS 86 (447)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHc
Confidence 34455667777653
No 10
>d1l0qa1 b.1.3.1 (A:302-391) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}
Probab=7.37 E-value=2.1e+02 Score=17.83 Aligned_cols=52 Identities=12% Similarity=0.042 Sum_probs=0.0
Q ss_pred CCCCCCcCcCcEEEEEeCCCCeeEEEEEeccccccccCCcEEEEEecCCCCcc
Q 028637 148 SPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVTLQIMEMKSYVVFLSQQTIYI 200 (206)
Q Consensus 148 ~~~~~~~~f~~VVlVe~P~~g~~~iGFvT~~~~~~~~~~~~v~VFvPtsPn~~ 200 (206)
+||++...-+.+. ..|...|.|.+-+...+............|.+...|.++
T Consensus 39 FGdG~~s~~~~p~-h~y~~~G~Y~VtL~v~~~~g~~~~~~~~~v~v~~~P~ps 90 (90)
T d1l0qa1 39 FGDGSSSKKQNPT-HTYSETGIYTVRLTVSNSNGTDSQISTVNVVLKGSPTPS 90 (90)
T ss_dssp CSSSCEECSSSCE-ECCSSCEEEEEEEEEEETTEEEEEEEEEEEECTTSCCCC
T ss_pred eCCCCcccCccEE-EEeCcCCcEEEEEEEEeCCCCeEEEEEEEEEECCCCCCC
Done!