Query 028638
Match_columns 206
No_of_seqs 136 out of 1352
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 00:37:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028638.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028638hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 92.2 0.049 1.7E-06 31.6 1.1 27 14-40 16-42 (56)
2 3j21_g 50S ribosomal protein L 90.4 0.036 1.2E-06 31.8 -0.6 29 12-40 9-37 (51)
3 2knc_B Integrin beta-3; transm 80.6 7.7 0.00026 24.1 6.4 40 105-144 13-52 (79)
4 2cr8_A MDM4 protein; ZF-ranbp 61.6 3 0.0001 23.6 1.0 20 19-38 13-32 (53)
5 1joc_A EEA1, early endosomal a 61.3 2.1 7.2E-05 29.2 0.5 25 16-40 68-94 (125)
6 1x4u_A Zinc finger, FYVE domai 60.9 2.3 7.9E-05 26.7 0.6 25 16-40 13-39 (84)
7 2yw8_A RUN and FYVE domain-con 60.9 2.1 7.2E-05 26.8 0.4 26 16-41 18-45 (82)
8 1z2q_A LM5-1; membrane protein 60.5 2.3 7.9E-05 26.8 0.5 25 16-40 20-46 (84)
9 2c6a_A Ubiquitin-protein ligas 57.9 4.1 0.00014 22.5 1.1 20 19-38 15-34 (46)
10 1jmu_A Protein MU-1; protein-p 57.7 6.2 0.00021 21.0 1.8 22 184-205 11-32 (41)
11 1wfk_A Zinc finger, FYVE domai 56.5 2.6 8.9E-05 26.9 0.2 29 13-41 5-35 (88)
12 3u5e_m 60S ribosomal protein L 53.3 4.9 0.00017 27.3 1.2 24 16-39 92-117 (128)
13 3j20_Y 30S ribosomal protein S 51.9 2.5 8.5E-05 23.9 -0.4 23 3-25 3-27 (50)
14 1vfy_A Phosphatidylinositol-3- 49.2 2.5 8.6E-05 25.8 -0.7 24 18-41 12-37 (73)
15 3t7l_A Zinc finger FYVE domain 48.3 4.7 0.00016 25.7 0.5 24 17-40 20-45 (90)
16 1dvp_A HRS, hepatocyte growth 47.3 3.9 0.00013 30.6 -0.0 24 18-41 162-187 (220)
17 2dkt_A Ring finger and CHY zin 47.1 2.7 9.2E-05 29.4 -0.9 45 12-56 78-126 (143)
18 2zjr_Z 50S ribosomal protein L 41.2 8.6 0.00029 22.6 0.8 21 16-38 29-50 (60)
19 1y02_A CARP2, FYVE-ring finger 39.8 4.9 0.00017 27.2 -0.5 23 17-39 19-43 (120)
20 3zyq_A Hepatocyte growth facto 38.8 6 0.00021 29.8 -0.2 24 18-41 165-190 (226)
21 2apo_B Ribosome biogenesis pro 38.4 8.6 0.00029 22.6 0.5 22 16-39 5-26 (60)
22 3gox_A Restriction endonucleas 37.8 9.3 0.00032 28.0 0.7 17 12-28 70-86 (200)
23 3gj3_B Nuclear pore complex pr 35.2 15 0.00051 18.7 1.0 19 20-38 10-28 (33)
24 3v2d_5 50S ribosomal protein L 34.3 11 0.00036 22.2 0.4 20 17-38 30-50 (60)
25 2pg3_A Queuosine biosynthesis 34.3 10 0.00035 28.2 0.5 17 27-43 191-207 (232)
26 2aus_D NOP10, ribosome biogene 31.0 16 0.00055 21.4 0.8 22 16-39 4-25 (60)
27 1h7d_A Aminolevulinic acid syn 29.8 20 0.0007 20.0 1.1 15 42-56 5-19 (49)
28 2k4x_A 30S ribosomal protein S 28.7 14 0.00048 21.2 0.3 9 17-25 18-26 (55)
29 3qt1_I DNA-directed RNA polyme 28.3 22 0.00074 24.4 1.3 27 13-39 20-54 (133)
30 3mpx_A FYVE, rhogef and PH dom 25.8 14 0.0005 30.2 0.0 24 18-41 376-401 (434)
31 1twf_L ABC10-alpha, DNA-direct 24.8 22 0.00074 21.5 0.6 25 18-42 29-56 (70)
32 2dj8_A Protein CBFA2T1; zinc f 23.8 22 0.00075 20.4 0.5 27 9-38 7-33 (60)
33 3gj5_B Nuclear pore complex pr 23.6 14 0.00048 18.9 -0.3 13 16-28 20-32 (34)
34 1wil_A KIAA1045 protein; ring 22.9 37 0.0012 21.4 1.4 27 14-40 12-38 (89)
35 1ffk_W Ribosomal protein L37AE 22.0 8.6 0.0003 23.5 -1.5 31 13-43 23-57 (73)
36 3p8b_A DNA-directed RNA polyme 21.7 33 0.0011 21.4 1.0 30 8-39 14-43 (81)
37 3jyw_9 60S ribosomal protein L 21.2 12 0.00041 22.8 -1.0 29 15-43 24-56 (72)
38 2xzm_5 Ribosomal protein S26E 20.7 16 0.00053 24.5 -0.6 19 32-50 21-39 (119)
39 2vrw_B P95VAV, VAV1, proto-onc 20.6 18 0.00061 29.5 -0.5 30 14-43 354-386 (406)
40 2k1p_A Zinc finger RAN-binding 20.6 45 0.0015 16.7 1.3 19 19-37 8-26 (33)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=92.19 E-value=0.049 Score=31.64 Aligned_cols=27 Identities=33% Similarity=0.656 Sum_probs=23.0
Q ss_pred ccccccccccccccCCCCCCChhhchh
Q 028638 14 GGDLRYCQKCSHYKPPRAHHCRVCKRC 40 (206)
Q Consensus 14 ~~~~~~C~~C~~~kP~Rs~hC~~c~~c 40 (206)
.-..+.|-+|..+-|+|+..|+.||.-
T Consensus 16 ~~~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 16 VFLKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp SCCCEEETTTCCEECTTCSSCTTTCCC
T ss_pred HhchhhhccccCcCCcccccccCCCCC
Confidence 445678999999999999999998753
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=90.38 E-value=0.036 Score=31.76 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=24.1
Q ss_pred cCccccccccccccccCCCCCCChhhchh
Q 028638 12 SSGGDLRYCQKCSHYKPPRAHHCRVCKRC 40 (206)
Q Consensus 12 ~~~~~~~~C~~C~~~kP~Rs~hC~~c~~c 40 (206)
+..-..+.|..|...-|++...|+.||.-
T Consensus 9 ~r~~~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 9 ARIFKKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp HHSSSEEECTTTCCEECTTCSSCSSSSSC
T ss_pred HHHhCCccCCCCCCcCCCCceecCCCCCc
Confidence 33445688999999999999999999864
No 3
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=80.58 E-value=7.7 Score=24.13 Aligned_cols=40 Identities=25% Similarity=0.458 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHhHHhhhhh
Q 028638 105 VISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRA 144 (206)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~li~~n~TT~E~~~~~r~ 144 (206)
++.++++.++++.+..++++-+..-.+..-.++..++++.
T Consensus 13 Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~ 52 (79)
T 2knc_B 13 VLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERA 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555555555555544443
No 4
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=61.56 E-value=3 Score=23.55 Aligned_cols=20 Identities=25% Similarity=0.820 Sum_probs=16.2
Q ss_pred cccccccccCCCCCCChhhc
Q 028638 19 YCQKCSHYKPPRAHHCRVCK 38 (206)
Q Consensus 19 ~C~~C~~~kP~Rs~hC~~c~ 38 (206)
-|..|+..-||-..||..|-
T Consensus 13 kC~~C~k~N~Pl~ryC~rCw 32 (53)
T 2cr8_A 13 QCTECKKFNSPSKRYCFRCW 32 (53)
T ss_dssp ECSSSCCEECSSCCBCTTTC
T ss_pred ecccccccCCCccchhHHHH
Confidence 48889888888888887774
No 5
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=61.28 E-value=2.1 Score=29.22 Aligned_cols=25 Identities=32% Similarity=0.802 Sum_probs=17.6
Q ss_pred ccccccccccc--cCCCCCCChhhchh
Q 028638 16 DLRYCQKCSHY--KPPRAHHCRVCKRC 40 (206)
Q Consensus 16 ~~~~C~~C~~~--kP~Rs~hC~~c~~c 40 (206)
+...|..|... -..|-|||+.||+-
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v 94 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNI 94 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeE
Confidence 34578888643 24588999999763
No 6
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.92 E-value=2.3 Score=26.75 Aligned_cols=25 Identities=20% Similarity=0.547 Sum_probs=17.6
Q ss_pred ccccccccccc--cCCCCCCChhhchh
Q 028638 16 DLRYCQKCSHY--KPPRAHHCRVCKRC 40 (206)
Q Consensus 16 ~~~~C~~C~~~--kP~Rs~hC~~c~~c 40 (206)
+...|..|... --.|-|||+.||+-
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcE
Confidence 44578888642 34588999999763
No 7
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=60.86 E-value=2.1 Score=26.82 Aligned_cols=26 Identities=31% Similarity=0.781 Sum_probs=17.8
Q ss_pred ccccccccccc--cCCCCCCChhhchhh
Q 028638 16 DLRYCQKCSHY--KPPRAHHCRVCKRCV 41 (206)
Q Consensus 16 ~~~~C~~C~~~--kP~Rs~hC~~c~~cv 41 (206)
+...|..|... --.|-|||+.||+-+
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEE
Confidence 34578888642 235889999997643
No 8
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=60.55 E-value=2.3 Score=26.78 Aligned_cols=25 Identities=36% Similarity=0.775 Sum_probs=17.4
Q ss_pred ccccccccccc--cCCCCCCChhhchh
Q 028638 16 DLRYCQKCSHY--KPPRAHHCRVCKRC 40 (206)
Q Consensus 16 ~~~~C~~C~~~--kP~Rs~hC~~c~~c 40 (206)
+...|..|... --.|-|||+.||+-
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v 46 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYV 46 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcE
Confidence 45678888643 23588999999763
No 9
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=57.92 E-value=4.1 Score=22.48 Aligned_cols=20 Identities=35% Similarity=0.996 Sum_probs=17.0
Q ss_pred cccccccccCCCCCCChhhc
Q 028638 19 YCQKCSHYKPPRAHHCRVCK 38 (206)
Q Consensus 19 ~C~~C~~~kP~Rs~hC~~c~ 38 (206)
.|..|+..-||-..||..|-
T Consensus 15 kC~~C~~~N~Pl~r~C~rCw 34 (46)
T 2c6a_A 15 KCTSCNEMNPPLPSHCNRCW 34 (46)
T ss_dssp ECTTTCCEECSSCSSCTTTC
T ss_pred ecccccccCCCccchhhHHH
Confidence 59999988899888988774
No 10
>1jmu_A Protein MU-1; protein-protein complex, jelly roll, zinc finger, viral protein; HET: BOG; 2.80A {Reovirus SP} SCOP: e.35.1.1
Probab=57.73 E-value=6.2 Score=20.97 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=18.8
Q ss_pred CCCCCCceeeeccccccCCCCC
Q 028638 184 RHIGSGLNFRTAYHNAVGASMS 205 (206)
Q Consensus 184 ~~~~dG~~f~~~~~~~~~~~~~ 205 (206)
.-.|||-.|..+.|+.+++.++
T Consensus 11 nI~GdGN~F~p~a~~~ssA~P~ 32 (41)
T 1jmu_A 11 NVTGDGNVFKPSAETSSTAVPS 32 (41)
T ss_dssp CTTSSSCEECCBGGGCCCCBCC
T ss_pred EEeCCCceeCcccccccccCcc
Confidence 3479999999999999988775
No 11
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=56.52 E-value=2.6 Score=26.86 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=19.9
Q ss_pred Cccccccccccccc--cCCCCCCChhhchhh
Q 028638 13 SGGDLRYCQKCSHY--KPPRAHHCRVCKRCV 41 (206)
Q Consensus 13 ~~~~~~~C~~C~~~--kP~Rs~hC~~c~~cv 41 (206)
...+...|..|... ---|-|||+.||+-+
T Consensus 5 ~~~~~~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 5 SSGMESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CCCCCSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred CCCcCCCCcCcCCcccCccccccCCCCCCEE
Confidence 34455679999742 345889999998733
No 12
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=53.30 E-value=4.9 Score=27.28 Aligned_cols=24 Identities=46% Similarity=0.987 Sum_probs=20.6
Q ss_pred ccccccccccccCCCCCCChh--hch
Q 028638 16 DLRYCQKCSHYKPPRAHHCRV--CKR 39 (206)
Q Consensus 16 ~~~~C~~C~~~kP~Rs~hC~~--c~~ 39 (206)
..+.|.+|..+-|+|+..|+. ||.
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~ 117 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGH 117 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTS
T ss_pred ceEeeccccccCCchhhccchhhCCC
Confidence 357899999999999999994 865
No 13
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=51.88 E-value=2.5 Score=23.89 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=12.6
Q ss_pred cccceeEeecC--cccccccccccc
Q 028638 3 KMTKTLCTRSS--GGDLRYCQKCSH 25 (206)
Q Consensus 3 ~~~~~~~~~~~--~~~~~~C~~C~~ 25 (206)
+.-+-..+.+. .-..++|+.|..
T Consensus 3 ~~l~~y~v~~~kv~~~~k~CP~CG~ 27 (50)
T 3j20_Y 3 QKWKLYEIKDGKVIRKNKFCPRCGP 27 (50)
T ss_dssp CCCCCCEECSSCEECSSEECSSSCS
T ss_pred cceeEEEEECCEEEEecccCCCCCC
Confidence 33344444433 224678999975
No 14
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=49.23 E-value=2.5 Score=25.81 Aligned_cols=24 Identities=38% Similarity=0.747 Sum_probs=17.1
Q ss_pred ccccccccc--cCCCCCCChhhchhh
Q 028638 18 RYCQKCSHY--KPPRAHHCRVCKRCV 41 (206)
Q Consensus 18 ~~C~~C~~~--kP~Rs~hC~~c~~cv 41 (206)
..|..|+.. --.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 468888642 235889999998743
No 15
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=48.34 E-value=4.7 Score=25.70 Aligned_cols=24 Identities=33% Similarity=0.793 Sum_probs=16.5
Q ss_pred cccccccccc--cCCCCCCChhhchh
Q 028638 17 LRYCQKCSHY--KPPRAHHCRVCKRC 40 (206)
Q Consensus 17 ~~~C~~C~~~--kP~Rs~hC~~c~~c 40 (206)
...|..|... --.|-|||+.||+-
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v 45 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKV 45 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCE
Confidence 4568888642 23478999999763
No 16
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=47.31 E-value=3.9 Score=30.64 Aligned_cols=24 Identities=38% Similarity=0.885 Sum_probs=16.6
Q ss_pred ccccccccc--cCCCCCCChhhchhh
Q 028638 18 RYCQKCSHY--KPPRAHHCRVCKRCV 41 (206)
Q Consensus 18 ~~C~~C~~~--kP~Rs~hC~~c~~cv 41 (206)
..|..|... ---|-|||+.||+.+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 578888632 235888999998744
No 17
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=47.07 E-value=2.7 Score=29.41 Aligned_cols=45 Identities=24% Similarity=0.563 Sum_probs=29.4
Q ss_pred cCccccccccccccccCCC-CCCChhhchhhhCC---cccCcccCcccc
Q 028638 12 SSGGDLRYCQKCSHYKPPR-AHHCRVCKRCVLRM---DHHCIWISNCVG 56 (206)
Q Consensus 12 ~~~~~~~~C~~C~~~kP~R-s~hC~~c~~cv~~~---DHhC~w~~~cIG 56 (206)
+.....-||..|+.+.+.+ ..||..||-|..+- --||.--|.|+.
T Consensus 78 g~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 78 STLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp CCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred CccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 4444556888888886654 46788888887762 226766666654
No 18
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=41.19 E-value=8.6 Score=22.55 Aligned_cols=21 Identities=38% Similarity=0.901 Sum_probs=13.8
Q ss_pred ccccccccccccCCCCCC-Chhhc
Q 028638 16 DLRYCQKCSHYKPPRAHH-CRVCK 38 (206)
Q Consensus 16 ~~~~C~~C~~~kP~Rs~h-C~~c~ 38 (206)
....|+.|+..+ +.|| |..||
T Consensus 29 ~l~~c~~cG~~~--~pH~vc~~CG 50 (60)
T 2zjr_Z 29 NLTECPQCHGKK--LSHHICPNCG 50 (60)
T ss_dssp CCEECTTTCCEE--CTTBCCTTTC
T ss_pred CceECCCCCCEe--CCceEcCCCC
Confidence 345688888664 5555 77776
No 19
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=39.79 E-value=4.9 Score=27.22 Aligned_cols=23 Identities=26% Similarity=0.676 Sum_probs=15.9
Q ss_pred ccccccccc--ccCCCCCCChhhch
Q 028638 17 LRYCQKCSH--YKPPRAHHCRVCKR 39 (206)
Q Consensus 17 ~~~C~~C~~--~kP~Rs~hC~~c~~ 39 (206)
...|..|.. .-.-|-|||+.||+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ 43 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKK 43 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCC
T ss_pred cCcccCcCCccccccccccCCCCCC
Confidence 356888863 23458899999976
No 20
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=38.76 E-value=6 Score=29.81 Aligned_cols=24 Identities=33% Similarity=0.804 Sum_probs=15.3
Q ss_pred cccccccc--ccCCCCCCChhhchhh
Q 028638 18 RYCQKCSH--YKPPRAHHCRVCKRCV 41 (206)
Q Consensus 18 ~~C~~C~~--~kP~Rs~hC~~c~~cv 41 (206)
..|..|.. .---|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 46888862 1224778888887643
No 21
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=38.43 E-value=8.6 Score=22.57 Aligned_cols=22 Identities=27% Similarity=0.768 Sum_probs=15.7
Q ss_pred ccccccccccccCCCCCCChhhch
Q 028638 16 DLRYCQKCSHYKPPRAHHCRVCKR 39 (206)
Q Consensus 16 ~~~~C~~C~~~kP~Rs~hC~~c~~ 39 (206)
..+.|..|+.+-- .+.|+.||.
T Consensus 5 ~mr~C~~CgvYTL--k~~CP~CG~ 26 (60)
T 2apo_B 5 RMKKCPKCGLYTL--KEICPKCGE 26 (60)
T ss_dssp CCEECTTTCCEES--SSBCSSSCS
T ss_pred hceeCCCCCCEec--cccCcCCCC
Confidence 3567888887776 666777765
No 22
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=37.77 E-value=9.3 Score=28.03 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=13.9
Q ss_pred cCccccccccccccccC
Q 028638 12 SSGGDLRYCQKCSHYKP 28 (206)
Q Consensus 12 ~~~~~~~~C~~C~~~kP 28 (206)
+.....+.|.+|..+||
T Consensus 70 ~~~~G~K~C~~Cg~~Kp 86 (200)
T 3gox_A 70 GKGYDKKICNICHILKN 86 (200)
T ss_dssp STTSSEEECTTTCBEEE
T ss_pred cccCCCeECCCCCCCcc
Confidence 44667789999999987
No 23
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=35.23 E-value=15 Score=18.67 Aligned_cols=19 Identities=32% Similarity=0.871 Sum_probs=12.5
Q ss_pred ccccccccCCCCCCChhhc
Q 028638 20 CQKCSHYKPPRAHHCRVCK 38 (206)
Q Consensus 20 C~~C~~~kP~Rs~hC~~c~ 38 (206)
|..|...-++.+..|..|+
T Consensus 10 C~~C~~~N~~~~~kC~aC~ 28 (33)
T 3gj3_B 10 CDTCLVQNKPEAVKCVACE 28 (33)
T ss_dssp CTTTCCEECTTCSBCTTTC
T ss_pred CCcccCCCccccCEEcccC
Confidence 6666666666666666664
No 24
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=34.30 E-value=11 Score=22.16 Aligned_cols=20 Identities=30% Similarity=0.760 Sum_probs=13.0
Q ss_pred cccccccccccCCCCCC-Chhhc
Q 028638 17 LRYCQKCSHYKPPRAHH-CRVCK 38 (206)
Q Consensus 17 ~~~C~~C~~~kP~Rs~h-C~~c~ 38 (206)
...|++|+.. -+.|| |..||
T Consensus 30 l~~c~~cGe~--~~~H~vc~~CG 50 (60)
T 3v2d_5 30 LVPCPECKAM--KPPHTVCPECG 50 (60)
T ss_dssp CEECTTTCCE--ECTTSCCTTTC
T ss_pred eeECCCCCCe--ecceEEcCCCC
Confidence 4568888753 34555 77776
No 25
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=34.29 E-value=10 Score=28.23 Aligned_cols=17 Identities=29% Similarity=0.716 Sum_probs=13.9
Q ss_pred cCCCCCCChhhchhhhC
Q 028638 27 KPPRAHHCRVCKRCVLR 43 (206)
Q Consensus 27 kP~Rs~hC~~c~~cv~~ 43 (206)
.+.|..||..|+.|+.|
T Consensus 191 ~~~~~~~CG~C~~C~~r 207 (232)
T 2pg3_A 191 NGIKGDGCGQCAACHLR 207 (232)
T ss_dssp TSCCTTTTSCSHHHHHH
T ss_pred CCCCCCcCCcCHhHHHH
Confidence 45556899999999987
No 26
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=30.98 E-value=16 Score=21.39 Aligned_cols=22 Identities=36% Similarity=0.942 Sum_probs=15.1
Q ss_pred ccccccccccccCCCCCCChhhch
Q 028638 16 DLRYCQKCSHYKPPRAHHCRVCKR 39 (206)
Q Consensus 16 ~~~~C~~C~~~kP~Rs~hC~~c~~ 39 (206)
.++.|..|..+-- ...|..||.
T Consensus 4 ~mr~C~~Cg~YTL--k~~CP~CG~ 25 (60)
T 2aus_D 4 RIRKCPKCGRYTL--KETCPVCGE 25 (60)
T ss_dssp CCEECTTTCCEES--SSBCTTTCS
T ss_pred cceECCCCCCEEc--cccCcCCCC
Confidence 3567888877766 556777764
No 27
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase, ALAS, presequence, structure; NMR {Mus musculus} SCOP: j.88.1.1 PDB: 1h7j_A
Probab=29.81 E-value=20 Score=19.99 Aligned_cols=15 Identities=13% Similarity=0.078 Sum_probs=11.4
Q ss_pred hCCcccCcccCcccc
Q 028638 42 LRMDHHCIWISNCVG 56 (206)
Q Consensus 42 ~~~DHhC~w~~~cIG 56 (206)
..++|+||+++.+=.
T Consensus 5 a~~l~~CPFL~R~p~ 19 (49)
T 1h7d_A 5 AMLLRSCPVLSQGPT 19 (49)
T ss_dssp SCSCCSCCCCSSCSC
T ss_pred hhhhccCCchhcCCH
Confidence 357899999987653
No 28
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=28.70 E-value=14 Score=21.16 Aligned_cols=9 Identities=33% Similarity=1.210 Sum_probs=7.2
Q ss_pred ccccccccc
Q 028638 17 LRYCQKCSH 25 (206)
Q Consensus 17 ~~~C~~C~~ 25 (206)
+++|++|..
T Consensus 18 ~~fCPkCG~ 26 (55)
T 2k4x_A 18 HRFCPRCGP 26 (55)
T ss_dssp SCCCTTTTT
T ss_pred cccCcCCCC
Confidence 678999975
No 29
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=28.27 E-value=22 Score=24.43 Aligned_cols=27 Identities=26% Similarity=0.801 Sum_probs=16.2
Q ss_pred Ccccccccccccccc-CCCC-------CCChhhch
Q 028638 13 SGGDLRYCQKCSHYK-PPRA-------HHCRVCKR 39 (206)
Q Consensus 13 ~~~~~~~C~~C~~~k-P~Rs-------~hC~~c~~ 39 (206)
+....+||++|+-.- |... ..|+.|+-
T Consensus 20 ~~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY 54 (133)
T 3qt1_I 20 HMTTFRFCRDCNNMLYPREDKENNRLLFECRTCSY 54 (133)
T ss_dssp --CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCC
T ss_pred cccCCeeCCCCCCEeeECccCCCceeEEECCCCCC
Confidence 456689999996443 4422 44777754
No 30
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=25.76 E-value=14 Score=30.25 Aligned_cols=24 Identities=33% Similarity=0.786 Sum_probs=0.0
Q ss_pred ccccccccc--cCCCCCCChhhchhh
Q 028638 18 RYCQKCSHY--KPPRAHHCRVCKRCV 41 (206)
Q Consensus 18 ~~C~~C~~~--kP~Rs~hC~~c~~cv 41 (206)
..|..|... --.|-|||+.||+.+
T Consensus 376 ~~c~~c~~~f~~~~r~h~Cr~Cg~~~ 401 (434)
T 3mpx_A 376 MMCMNCGCDFSLTLRRHHCHACGKIV 401 (434)
T ss_dssp --------------------------
T ss_pred CcCCCcCCCCCCcchhhhcccCcCEe
Confidence 458778632 224778898888733
No 31
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=24.79 E-value=22 Score=21.51 Aligned_cols=25 Identities=28% Similarity=0.648 Sum_probs=16.5
Q ss_pred ccccccccc---cCCCCCCChhhchhhh
Q 028638 18 RYCQKCSHY---KPPRAHHCRVCKRCVL 42 (206)
Q Consensus 18 ~~C~~C~~~---kP~Rs~hC~~c~~cv~ 42 (206)
-.|..|+.. ++.-+-+|+.||.-|+
T Consensus 29 Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 29 YICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp EECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred EECCCCCCcceeCCCCCccCCCCCceEe
Confidence 469999754 4444667888876444
No 32
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=23.77 E-value=22 Score=20.44 Aligned_cols=27 Identities=15% Similarity=0.438 Sum_probs=16.9
Q ss_pred EeecCccccccccccccccCCCCCCChhhc
Q 028638 9 CTRSSGGDLRYCQKCSHYKPPRAHHCRVCK 38 (206)
Q Consensus 9 ~~~~~~~~~~~C~~C~~~kP~Rs~hC~~c~ 38 (206)
++++..+....|..|.... .+.|+.|.
T Consensus 7 ~~~~~~~~~~~C~~C~~~~---~~~Cs~C~ 33 (60)
T 2dj8_A 7 GINQQEDSSESCWNCGRKA---SETCSGCN 33 (60)
T ss_dssp CCCCCCCCSCCCSSSCSCC---CEECTTTS
T ss_pred ccCcCCCCCcccccCCCCC---cccCCCCC
Confidence 4555666778999998733 34455443
No 33
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=23.60 E-value=14 Score=18.91 Aligned_cols=13 Identities=38% Similarity=0.759 Sum_probs=6.2
Q ss_pred ccccccccccccC
Q 028638 16 DLRYCQKCSHYKP 28 (206)
Q Consensus 16 ~~~~C~~C~~~kP 28 (206)
....|.-|+..||
T Consensus 20 ~~~kC~aCet~Kp 32 (34)
T 3gj5_B 20 DSTKCIACESAKP 32 (34)
T ss_dssp SCSBCTTTCCBC-
T ss_pred ccCEEcccCCcCC
Confidence 3345555555554
No 34
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=22.87 E-value=37 Score=21.38 Aligned_cols=27 Identities=26% Similarity=0.612 Sum_probs=20.3
Q ss_pred ccccccccccccccCCCCCCChhhchh
Q 028638 14 GGDLRYCQKCSHYKPPRAHHCRVCKRC 40 (206)
Q Consensus 14 ~~~~~~C~~C~~~kP~Rs~hC~~c~~c 40 (206)
......|..|..+-..--.-|++|+|+
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRvC~Rv 38 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRVCTRV 38 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSSSSSC
T ss_pred CCCCcccCccccccccceecccccccc
Confidence 334568999998887666779999874
No 35
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=22.02 E-value=8.6 Score=23.53 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=21.1
Q ss_pred CccccccccccccccCCCC----CCChhhchhhhC
Q 028638 13 SGGDLRYCQKCSHYKPPRA----HHCRVCKRCVLR 43 (206)
Q Consensus 13 ~~~~~~~C~~C~~~kP~Rs----~hC~~c~~cv~~ 43 (206)
+......|+.|...+--|. .+|+.|+.-++.
T Consensus 23 ~q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AG 57 (73)
T 1ffk_W 23 KHKKKYKCPVCGFPKLKRASTSIWVCGHCGYKIAG 57 (73)
T ss_pred hcccCccCCCCCCceeEEEEeEEEECCCCCcEEEC
Confidence 3445578999986555553 789998876553
No 36
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=21.70 E-value=33 Score=21.36 Aligned_cols=30 Identities=27% Similarity=0.569 Sum_probs=17.4
Q ss_pred eEeecCccccccccccccccCCCCCCChhhch
Q 028638 8 LCTRSSGGDLRYCQKCSHYKPPRAHHCRVCKR 39 (206)
Q Consensus 8 ~~~~~~~~~~~~C~~C~~~kP~Rs~hC~~c~~ 39 (206)
+.-.+.....+=|..|+...+.. -|+.|+.
T Consensus 14 ~~~~~~~m~~rAC~~C~~v~~~d--~CPnCgs 43 (81)
T 3p8b_A 14 LVPRGSHMSEKACRHCHYITSED--RCPVCGS 43 (81)
T ss_dssp --------CCEEETTTCBEESSS--SCTTTCC
T ss_pred cccCCcchhHHHHhhCCCccCCC--CCCCCCC
Confidence 44556667778899999888776 4777764
No 37
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=21.19 E-value=12 Score=22.80 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=19.9
Q ss_pred cccccccccccccCCC----CCCChhhchhhhC
Q 028638 15 GDLRYCQKCSHYKPPR----AHHCRVCKRCVLR 43 (206)
Q Consensus 15 ~~~~~C~~C~~~kP~R----s~hC~~c~~cv~~ 43 (206)
.....|+.|...+--| =+||..|+.-++.
T Consensus 24 ~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AG 56 (72)
T 3jyw_9 24 HARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAG 56 (72)
T ss_dssp HSCBCCSSCCSSCBSBCSSSCBCCSSSCCCCCC
T ss_pred ccCccCCCCCCceeEecCCCeEECCCCCCEEeC
Confidence 3456799997665555 3689999876553
No 38
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=20.75 E-value=16 Score=24.55 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=13.8
Q ss_pred CCChhhchhhhCCcccCcc
Q 028638 32 HHCRVCKRCVLRMDHHCIW 50 (206)
Q Consensus 32 ~hC~~c~~cv~~~DHhC~w 50 (206)
-+|..|++||++----+.+
T Consensus 21 V~C~nCgr~vPKDKAIKrf 39 (119)
T 2xzm_5 21 VPCTNCGRQVAKDKAVKRY 39 (119)
T ss_dssp EECTTTCCEEETTTSEECC
T ss_pred EeeCCccccCcccceeEEE
Confidence 3699999999985544433
No 39
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=20.64 E-value=18 Score=29.50 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=21.1
Q ss_pred cccccccccccccc---CCCCCCChhhchhhhC
Q 028638 14 GGDLRYCQKCSHYK---PPRAHHCRVCKRCVLR 43 (206)
Q Consensus 14 ~~~~~~C~~C~~~k---P~Rs~hC~~c~~cv~~ 43 (206)
.....+|..|+..- --|-+||..|+..+-+
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~ 386 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCRAPAHK 386 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECG
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCcCccch
Confidence 44567899997432 3477889999876654
No 40
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=20.59 E-value=45 Score=16.66 Aligned_cols=19 Identities=32% Similarity=0.885 Sum_probs=8.8
Q ss_pred cccccccccCCCCCCChhh
Q 028638 19 YCQKCSHYKPPRAHHCRVC 37 (206)
Q Consensus 19 ~C~~C~~~kP~Rs~hC~~c 37 (206)
.|..|...--+|-..|..|
T Consensus 8 ~C~~C~~~Nfa~R~~C~~C 26 (33)
T 2k1p_A 8 QCKTCSNVNWARRSECNMC 26 (33)
T ss_dssp BCSSSCCBCCTTCSBCSSS
T ss_pred ccCCCCCcccccccccccc
Confidence 3445544444444444444
Done!