Your job contains 1 sequence.
>028639
MEKGGGGKGGGVGGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSK
SDGKFETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAH
ILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEI
CVIANICPETVEEAYAIVPSLKVWLV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 028639
(206 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2178158 - symbol:NRPB4 species:3702 "Arabidops... 248 3.9e-21 1
DICTYBASE|DDB_G0282739 - symbol:rpb4 "DNA-directed RNA po... 130 1.2e-08 1
ZFIN|ZDB-GENE-040714-2 - symbol:polr2d "polymerase (RNA) ... 121 1.1e-07 1
UNIPROTKB|F1P2S1 - symbol:POLR2D "Uncharacterized protein... 118 2.3e-07 1
WB|WBGene00018391 - symbol:rpb-4 species:6239 "Caenorhabd... 117 2.9e-07 1
UNIPROTKB|Q1JQ91 - symbol:POLR2D "Polymerase (RNA) II (DN... 115 4.8e-07 1
UNIPROTKB|E2RPH1 - symbol:POLR2D "Uncharacterized protein... 115 4.8e-07 1
UNIPROTKB|O15514 - symbol:POLR2D "DNA-directed RNA polyme... 115 4.8e-07 1
MGI|MGI:1916491 - symbol:Polr2d "polymerase (RNA) II (DNA... 115 4.8e-07 1
RGD|1308565 - symbol:Polr2d "polymerase (RNA) II (DNA dir... 115 4.8e-07 1
UNIPROTKB|E9PB93 - symbol:POLR2D "DNA-directed RNA polyme... 103 1.0e-05 1
FB|FBgn0263757 - symbol:Rpb4 species:7227 "Drosophila mel... 102 1.3e-05 1
>TAIR|locus:2178158 [details] [associations]
symbol:NRPB4 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0032774 "RNA biosynthetic process" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA;IPI]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=RCA;TAS] InterPro:IPR005574
InterPro:IPR010997 Pfam:PF03874 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 EMBL:AB016893 GO:GO:0006366
SUPFAM:SSF47819 GO:GO:0003899 GO:GO:0005665 eggNOG:COG5250
KO:K03012 InterPro:IPR006590 SMART:SM00657 OMA:SQLVFPK
HOGENOM:HOG000195281 EMBL:AF016511 EMBL:AY086086 EMBL:BT025500
EMBL:AK317113 IPI:IPI00529292 RefSeq:NP_196554.1 UniGene:At.6949
ProteinModelPortal:O48890 SMR:O48890 STRING:O48890 PaxDb:O48890
PRIDE:O48890 EnsemblPlants:AT5G09920.1 GeneID:830853
KEGG:ath:AT5G09920 TAIR:At5g09920 InParanoid:O48890
PhylomeDB:O48890 ProtClustDB:CLSN2687520 Genevestigator:O48890
Uniprot:O48890
Length = 138
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 51/104 (49%), Positives = 70/104 (67%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ +S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
NP AV+ + + LS H +T+ E+CV+ N+CPETVEEA A+VPSLK
Sbjct: 70 NPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLK 113
>DICTYBASE|DDB_G0282739 [details] [associations]
symbol:rpb4 "DNA-directed RNA polymerase II subunit
4" species:44689 "Dictyostelium discoideum" [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IGI;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;IGI;ISS] [GO:0044237 "cellular metabolic
process" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISS]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR005574
InterPro:IPR010997 Pfam:PF03874 dictyBase:DDB_G0282739
GO:GO:0005737 GO:GO:0000166 EMBL:AAFI02000047
GenomeReviews:CM000152_GR GO:GO:0006366 SUPFAM:SSF47819
GO:GO:0003899 GO:GO:0005665 RefSeq:XP_640235.1 HSSP:O15514
ProteinModelPortal:Q54S04 STRING:Q54S04 EnsemblProtists:DDB0216294
GeneID:8623774 KEGG:ddi:DDB_G0282739 eggNOG:COG5250 KO:K03012
OMA:LCPETAD InterPro:IPR006590 SMART:SM00657 Uniprot:Q54S04
Length = 155
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 42/129 (32%), Positives = 69/129 (53%)
Query: 88 KVSVVKEALPLE-LRVEQELPKNAKCLMDCEAAHILE---GIQEQMALLSADPTIKIPV- 142
K S ++E L L+ ++L K+AK L++ E A +LE GI E T+ I +
Sbjct: 7 KRSGIQEEEDLTTLKFPRDL-KDAKFLLNSEVAILLEHRKGISESEGTEFPQNTLLIHLY 65
Query: 143 ---------SFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEE 193
+F K L YA+ S + N ++K + +LS+ + + EI +AN+CPE +E
Sbjct: 66 YNSINDIIRTFHKTLAYAEKFSRYKNKTSIKQVRTALSKQNLEEFEIASLANLCPEISDE 125
Query: 194 AYAIVPSLK 202
A +++PSLK
Sbjct: 126 AKSLIPSLK 134
>ZFIN|ZDB-GENE-040714-2 [details] [associations]
symbol:polr2d "polymerase (RNA) II (DNA directed)
polypeptide D" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
ZFIN:ZDB-GENE-040714-2 GO:GO:0000166 GO:GO:0006351 SUPFAM:SSF47819
GO:GO:0003899 InterPro:IPR006590 SMART:SM00657
GeneTree:ENSGT00390000004912 EMBL:CU638696 IPI:IPI00498358
Ensembl:ENSDART00000108718 Bgee:F1RDX0 Uniprot:F1RDX0
Length = 145
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 36/119 (30%), Positives = 61/119 (51%)
Query: 84 ANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVS 143
A +V V+E +L +E +NA+ L++ E +LE ++Q SA+ ++
Sbjct: 8 AGATQVGDVEEDAS-QLMFPKEF-ENAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEV 63
Query: 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
F K L Y S F N + + + L + + E+ +AN+CPE EEA A++PSL+
Sbjct: 64 FMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLE 122
>UNIPROTKB|F1P2S1 [details] [associations]
symbol:POLR2D "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
GO:GO:0000166 GO:GO:0004672 GO:GO:0006366 SUPFAM:SSF47819
GO:GO:0003899 GO:GO:0005665 InterPro:IPR006590 SMART:SM00657
GeneTree:ENSGT00390000004912 OMA:SQLVFPK EMBL:AADN02024422
IPI:IPI00592989 Ensembl:ENSGALT00000003200 Uniprot:F1P2S1
Length = 147
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 30/95 (31%), Positives = 51/95 (53%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 32 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 89
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EEA A++PSL+
Sbjct: 90 SLLLQKKLHKFELACLANLCPETAEEAKALIPSLE 124
>WB|WBGene00018391 [details] [associations]
symbol:rpb-4 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
GO:GO:0009792 GO:GO:0000166 GO:GO:0006351 SUPFAM:SSF47819
GO:GO:0003899 EMBL:FO080417 eggNOG:COG5250 KO:K03012
InterPro:IPR006590 SMART:SM00657 GeneTree:ENSGT00390000004912
OMA:SQLVFPK HOGENOM:HOG000195281 RefSeq:NP_495544.2
ProteinModelPortal:O02092 SMR:O02092 STRING:O02092 MEROPS:S16.A05
PaxDb:O02092 EnsemblMetazoa:F43E2.2 GeneID:174208
KEGG:cel:CELE_F43E2.2 UCSC:F43E2.2 CTD:174208 WormBase:F43E2.2
InParanoid:O02092 NextBio:883013 Uniprot:O02092
Length = 144
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 31/90 (34%), Positives = 47/90 (52%)
Query: 113 LMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSE 172
L+ E +LE + + S D ++ F K L YA+ S F N + ++ + SE
Sbjct: 35 LLTAEVYLLLE--HRRQSSESKDEIEEMSEVFIKTLNYARRMSRFKNRETIRAVRAIFSE 92
Query: 173 HGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ E+ IAN+CPE EEA A+VPSL+
Sbjct: 93 KHLHKFEVAQIANLCPENAEEAKALVPSLE 122
>UNIPROTKB|Q1JQ91 [details] [associations]
symbol:POLR2D "Polymerase (RNA) II (DNA directed)
polypeptide D" species:9913 "Bos taurus" [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR005574
InterPro:IPR010997 Pfam:PF03874 GO:GO:0000166 GO:GO:0004672
GO:GO:0006366 SUPFAM:SSF47819 GO:GO:0003899 GO:GO:0005665
eggNOG:COG5250 KO:K03012 InterPro:IPR006590 SMART:SM00657
GeneTree:ENSGT00390000004912 OMA:SQLVFPK CTD:5433
HOGENOM:HOG000195281 HOVERGEN:HBG002800 OrthoDB:EOG444KMN
EMBL:DAAA02003881 EMBL:BC116155 IPI:IPI00692541
RefSeq:NP_001069926.1 UniGene:Bt.4253 SMR:Q1JQ91 STRING:Q1JQ91
Ensembl:ENSBTAT00000013496 GeneID:617422 KEGG:bta:617422
InParanoid:Q1JQ91 NextBio:20900656 Uniprot:Q1JQ91
Length = 142
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EE+ A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLE 119
>UNIPROTKB|E2RPH1 [details] [associations]
symbol:POLR2D "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
GO:GO:0000166 GO:GO:0004672 GO:GO:0006366 SUPFAM:SSF47819
GO:GO:0003899 GO:GO:0005665 KO:K03012 InterPro:IPR006590
SMART:SM00657 GeneTree:ENSGT00390000004912 OMA:SQLVFPK CTD:5433
EMBL:AAEX03011834 RefSeq:XP_540983.2 ProteinModelPortal:E2RPH1
Ensembl:ENSCAFT00000006918 GeneID:483863 KEGG:cfa:483863
Uniprot:E2RPH1
Length = 142
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EE+ A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLE 119
>UNIPROTKB|O15514 [details] [associations]
symbol:POLR2D "DNA-directed RNA polymerase II subunit RPB4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IMP] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA;IMP;TAS] [GO:0004672 "protein
kinase activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR005574
InterPro:IPR010997 Pfam:PF03874 Reactome:REACT_116125 GO:GO:0016032
GO:GO:0000166 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0006368
GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788 SUPFAM:SSF47819
GO:GO:0006370 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
GO:GO:0003899 GO:GO:0005665 eggNOG:COG5250 KO:K03012
InterPro:IPR006590 SMART:SM00657 OMA:SQLVFPK EMBL:U89387
EMBL:U85510 EMBL:BC017205 EMBL:BC093795 EMBL:BC093797
IPI:IPI00007283 RefSeq:NP_004796.1 UniGene:Hs.715348 PDB:2C35
PDBsum:2C35 ProteinModelPortal:O15514 SMR:O15514 DIP:DIP-32912N
IntAct:O15514 STRING:O15514 PhosphoSite:O15514 PaxDb:O15514
PeptideAtlas:O15514 PRIDE:O15514 DNASU:5433 Ensembl:ENST00000272645
GeneID:5433 KEGG:hsa:5433 UCSC:uc002tpj.3 CTD:5433
GeneCards:GC02M128620 HGNC:HGNC:9191 HPA:HPA046092 MIM:606017
neXtProt:NX_O15514 PharmGKB:PA33511 HOGENOM:HOG000195281
HOVERGEN:HBG002800 InParanoid:O15514 OrthoDB:EOG444KMN
PhylomeDB:O15514 ChiTaRS:POLR2D EvolutionaryTrace:O15514
GenomeRNAi:5433 NextBio:21021 ArrayExpress:O15514 Bgee:O15514
CleanEx:HS_POLR2D Genevestigator:O15514 GermOnline:ENSG00000144231
Uniprot:O15514
Length = 142
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EE+ A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLE 119
>MGI|MGI:1916491 [details] [associations]
symbol:Polr2d "polymerase (RNA) II (DNA directed)
polypeptide D" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0044237 "cellular metabolic process" evidence=IEA]
InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874 MGI:MGI:1916491
GO:GO:0000166 GO:GO:0004672 GO:GO:0006366 SUPFAM:SSF47819
GO:GO:0003899 GO:GO:0005665 eggNOG:COG5250 KO:K03012
InterPro:IPR006590 SMART:SM00657 GeneTree:ENSGT00390000004912
OMA:SQLVFPK CTD:5433 HOGENOM:HOG000195281 HOVERGEN:HBG002800
OrthoDB:EOG444KMN EMBL:AK011600 EMBL:BC004810 IPI:IPI00268215
RefSeq:NP_081278.1 RefSeq:NP_081377.1 UniGene:Mm.279898
ProteinModelPortal:Q9D7M8 SMR:Q9D7M8 STRING:Q9D7M8
PhosphoSite:Q9D7M8 REPRODUCTION-2DPAGE:Q9D7M8 PaxDb:Q9D7M8
PRIDE:Q9D7M8 Ensembl:ENSMUST00000025106 GeneID:69241 KEGG:mmu:69241
UCSC:uc008eim.1 InParanoid:Q9D7M8 NextBio:328957 Bgee:Q9D7M8
CleanEx:MM_POLR2D Genevestigator:Q9D7M8
GermOnline:ENSMUSG00000024258 Uniprot:Q9D7M8
Length = 142
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EE+ A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLE 119
>RGD|1308565 [details] [associations]
symbol:Polr2d "polymerase (RNA) II (DNA directed) polypeptide D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISO] [GO:0004672 "protein kinase activity"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
RGD:1308565 GO:GO:0000166 GO:GO:0004672 GO:GO:0006366
SUPFAM:SSF47819 GO:GO:0003899 EMBL:CH473974 GO:GO:0005665 KO:K03012
InterPro:IPR006590 SMART:SM00657 GeneTree:ENSGT00390000004912
OMA:SQLVFPK CTD:5433 OrthoDB:EOG444KMN IPI:IPI00360244
RefSeq:NP_001102356.1 UniGene:Rn.128728 SMR:D4A259
Ensembl:ENSRNOT00000021738 GeneID:364834 KEGG:rno:364834
UCSC:RGD:1308565 NextBio:686138 Uniprot:D4A259
Length = 142
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EE+ A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLE 119
>UNIPROTKB|E9PB93 [details] [associations]
symbol:POLR2D "DNA-directed RNA polymerase II subunit RPB4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
GO:GO:0000166 GO:GO:0006351 SUPFAM:SSF47819 GO:GO:0003899
InterPro:IPR006590 SMART:SM00657 HGNC:HGNC:9191 ChiTaRS:POLR2D
EMBL:AC006011 EMBL:AC012306 IPI:IPI00915935
ProteinModelPortal:E9PB93 SMR:E9PB93 PRIDE:E9PB93
Ensembl:ENST00000409698 ArrayExpress:E9PB93 Bgee:E9PB93
Uniprot:E9PB93
Length = 104
Score = 103 (41.3 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 133 SADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVE 192
SA+ ++ F K L Y S F N + + + L + + E+ +AN+CPET E
Sbjct: 12 SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAE 71
Query: 193 EAYAIVPSLK 202
E+ A++PSL+
Sbjct: 72 ESKALIPSLE 81
>FB|FBgn0263757 [details] [associations]
symbol:Rpb4 species:7227 "Drosophila melanogaster"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;IDA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS;IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS;IDA] [GO:0016591 "DNA-directed
RNA polymerase II, holoenzyme" evidence=ISS] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IDA] [GO:0043966 "histone H3 acetylation" evidence=IDA]
[GO:0043967 "histone H4 acetylation" evidence=IDA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0005671 "Ada2/Gcn5/Ada3
transcription activator complex" evidence=IDA] [GO:0007095 "mitotic
G2 DNA damage checkpoint" evidence=IGI] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR005574 InterPro:IPR010997 Pfam:PF03874
EMBL:AE014297 GO:GO:0007095 GO:GO:0022008 GO:GO:0000166
GO:GO:0008283 GO:GO:0003682 GO:GO:0006366 GO:GO:0043967
eggNOG:COG5114 GO:GO:0005671 GO:GO:0005700 SUPFAM:SSF47819
GO:GO:0043966 GO:GO:0003899 GO:GO:0005665 HSSP:O15514 KO:K03012
InterPro:IPR006590 SMART:SM00657 EMBL:AF544019 EMBL:AF544020
EMBL:BT022168 EMBL:BT023308 EMBL:BT023309 RefSeq:NP_001014633.2
UniGene:Dm.13710 ProteinModelPortal:Q9VEA5 SMR:Q9VEA5 IntAct:Q9VEA5
MINT:MINT-764159 STRING:Q9VEA5 PRIDE:Q9VEA5
EnsemblMetazoa:FBtr0310379 GeneID:326128 KEGG:dme:Dmel_CG33520
UCSC:CG33520-RA CTD:326128 FlyBase:FBgn0263757
GeneTree:ENSGT00390000004912 InParanoid:Q9VEA5 OMA:SQLVFPK
OrthoDB:EOG4FXPPS GenomeRNAi:326128 NextBio:847197 Bgee:Q9VEA5
Uniprot:Q9VEA5
Length = 139
Score = 102 (41.0 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 29/104 (27%), Positives = 50/104 (48%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
+L+ +E +NA+ L+ E +L+ + Q SAD + F K Y + F
Sbjct: 16 DLQFPKEF-ENAETLLISEVHMLLDHRKRQNE--SADEEQEFSEVFMKTYAYTDSFRKFK 72
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
N + + L + + E+ + N+CPE EEA A++PSL+
Sbjct: 73 NKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLE 116
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.130 0.368 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 206 177 0.00084 109 3 11 23 0.47 32
31 0.50 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 597 (63 KB)
Total size of DFA: 147 KB (2089 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.79u 0.20s 15.99t Elapsed: 00:00:00
Total cpu time: 15.79u 0.20s 15.99t Elapsed: 00:00:00
Start: Sat May 11 05:09:12 2013 End: Sat May 11 05:09:12 2013