BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028639
(206 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225468957|ref|XP_002274855.1| PREDICTED: uncharacterized protein LOC100246461 isoform 1 [Vitis
vinifera]
gi|359495604|ref|XP_003635035.1| PREDICTED: uncharacterized protein LOC100246461 isoform 2 [Vitis
vinifera]
gi|297736694|emb|CBI25730.3| unnamed protein product [Vitis vinifera]
Length = 239
Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 122/199 (61%), Positives = 154/199 (77%), Gaps = 2/199 (1%)
Query: 6 GGKGGGVGGG-GKTSLKS-IPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDG 63
GGKG + GK+S KS + ASL GKDD++AKSKRGRKVQFN GL E + T S S G
Sbjct: 5 GGKGFSLNSNLGKSSTKSPLEASLTGKDDSAAKSKRGRKVQFNNGGLPEARLTSSLMSGG 64
Query: 64 KFETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILE 123
K + KG L+KGGKG +V NG K +V K PLELR+EQELPKNAKC+MDCEAA IL+
Sbjct: 65 KTDIPIAKGDLSKGGKGGRVLNGEKSAVPKPPAPLELRIEQELPKNAKCMMDCEAALILK 124
Query: 124 GIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVI 183
GIQEQM +LS DPTIKIP+SF+KGL YA++ + + +PQ+V+ + + LS++GV+DGEICVI
Sbjct: 125 GIQEQMVVLSEDPTIKIPLSFNKGLQYAQSSNCYASPQSVRLVLEPLSKYGVSDGEICVI 184
Query: 184 ANICPETVEEAYAIVPSLK 202
AN CPET++E +A+VPSLK
Sbjct: 185 ANTCPETIDEVFALVPSLK 203
>gi|255568114|ref|XP_002525033.1| conserved hypothetical protein [Ricinus communis]
gi|223535695|gb|EEF37360.1| conserved hypothetical protein [Ricinus communis]
Length = 203
Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 119/204 (58%), Positives = 150/204 (73%), Gaps = 27/204 (13%)
Query: 1 MEKGGGGKGGGVGGGG-KTSLKSI-PASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFS 58
MEKGG KG + G G K+SLKSI PAS GKDD SAKSKRG+KVQFN++G
Sbjct: 1 MEKGG--KGFSLPGKGLKSSLKSITPASTKGKDDTSAKSKRGKKVQFNSQG--------- 49
Query: 59 SKSDGKFETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEA 118
++KGGKGDKV+NG K+S KE PLEL++EQ+LPKNAKCLMDCEA
Sbjct: 50 --------------NMSKGGKGDKVSNGVKISSTKEPQPLELKIEQDLPKNAKCLMDCEA 95
Query: 119 AHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDG 178
A +L+GIQEQM LLS DPTIK+PVSFD+ L +A+T + FTNPQ+V+ + + L +HGV++G
Sbjct: 96 AQVLQGIQEQMVLLSRDPTIKLPVSFDRALQHARTGARFTNPQSVRRILEGLKKHGVSEG 155
Query: 179 EICVIANICPETVEEAYAIVPSLK 202
EIC IAN+CP+ V+E +A+VPSLK
Sbjct: 156 EICTIANVCPDGVDEVFALVPSLK 179
>gi|449491225|ref|XP_004158834.1| PREDICTED: DNA-directed RNA polymerase II subunit rpb4-like
[Cucumis sativus]
Length = 220
Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 107/192 (55%), Positives = 137/192 (71%), Gaps = 15/192 (7%)
Query: 16 GKTSLKSIP---ASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKG 72
K+SLKS ASL GKDD+ +K K+GRKVQF+ +G + TFS K GK G
Sbjct: 16 AKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDATNTFSMKYSGK------NG 69
Query: 73 GLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKC--LMDCEAAHILEGIQEQMA 130
L KGGKG AN K S+ KE LEL++EQELPKN KC LMDCEAA +L+GIQ+QM
Sbjct: 70 DLGKGGKG---AN-TKASIAKEPQALELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMV 125
Query: 131 LLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPET 190
LSADPTIKIP SFD+GL YAK +H+ N ++V+ + ++L ++GVTD EICVIAN+CP+T
Sbjct: 126 FLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGVTDSEICVIANVCPDT 185
Query: 191 VEEAYAIVPSLK 202
+E +A++PSLK
Sbjct: 186 TDEVFALLPSLK 197
>gi|449434414|ref|XP_004134991.1| PREDICTED: uncharacterized protein LOC101213971 [Cucumis sativus]
Length = 242
Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/192 (55%), Positives = 137/192 (71%), Gaps = 15/192 (7%)
Query: 16 GKTSLKSIP---ASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKG 72
K+SLKS ASL GKDD+ +K K+GRKVQF+ +G + TFS K GK G
Sbjct: 16 AKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDATNTFSMKYSGK------NG 69
Query: 73 GLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKC--LMDCEAAHILEGIQEQMA 130
L KGGKG AN K S+ KE LEL++EQELPKN KC LMDCEAA +L+GIQ+QM
Sbjct: 70 DLGKGGKG---AN-TKASIAKEPQALELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMV 125
Query: 131 LLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPET 190
LSADPTIKIP SFD+GL YAK +H+ N ++V+ + ++L ++GVTD EICVIAN+CP+T
Sbjct: 126 FLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGVTDSEICVIANVCPDT 185
Query: 191 VEEAYAIVPSLK 202
+E +A++PSLK
Sbjct: 186 TDEVFALLPSLK 197
>gi|356532865|ref|XP_003534990.1| PREDICTED: DNA-directed RNA polymerase II subunit rpb4-like
[Glycine max]
Length = 211
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/206 (48%), Positives = 135/206 (65%), Gaps = 23/206 (11%)
Query: 1 MEKGGGGKG----GGVGGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFT 56
MEKGG G GG+G SL GKDD + KS +GR+VQF+T+G
Sbjct: 1 MEKGGKGASLFSKGGLG------------SLKGKDDIATKSAKGRRVQFSTDGP-----L 43
Query: 57 FSSKSDGKFETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDC 116
F S T+ GG KGG GD VA G K S K++ P + RV+Q+LP+N KCLMDC
Sbjct: 44 FESGVSSNSATSLKSGG--KGGMGDNVAKGGKNSQSKDSHPSDYRVDQKLPENIKCLMDC 101
Query: 117 EAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVT 176
EA IL+GIQE+M +LS D T+K+P+SFDKGL YAK++S + + Q+++ + L++ GVT
Sbjct: 102 EAVDILQGIQERMVMLSRDSTVKMPISFDKGLQYAKSNSKYLDLQSIRHILDRLAKCGVT 161
Query: 177 DGEICVIANICPETVEEAYAIVPSLK 202
D EICVI N+CPET++E +A++PSLK
Sbjct: 162 DSEICVIGNVCPETIDEVFALLPSLK 187
>gi|224124738|ref|XP_002329936.1| predicted protein [Populus trichocarpa]
gi|222871958|gb|EEF09089.1| predicted protein [Populus trichocarpa]
Length = 197
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 91/166 (54%), Positives = 117/166 (70%), Gaps = 23/166 (13%)
Query: 37 SKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANGAKVSVVKEAL 96
S GRK+ F +EG L+KGGKG K+ANG K + KE
Sbjct: 31 SNNGRKIHFESEG-----------------------NLSKGGKGGKIANGGKSPMTKEPP 67
Query: 97 PLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSH 156
PLEL++E ELP+NAK LMDCEAA IL+GIQ+QM LLS DPTIK+PVSFDKGL YAK +H
Sbjct: 68 PLELKIESELPQNAKPLMDCEAAQILQGIQDQMVLLSQDPTIKLPVSFDKGLQYAKNGAH 127
Query: 157 FTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+TNPQ+V+ + ++L ++GV+DGEI +IAN+ PET +EA+A+VPSLK
Sbjct: 128 YTNPQSVRRVLEALRKYGVSDGEISLIANVFPETADEAFALVPSLK 173
>gi|388515433|gb|AFK45778.1| unknown [Medicago truncatula]
Length = 201
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/199 (49%), Positives = 129/199 (64%), Gaps = 28/199 (14%)
Query: 6 GGKGGGVGGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKF 65
GGKGG + G L GKDD++ KS + RKVQF +EGL F S+S+G
Sbjct: 5 GGKGGSLLSKG---------GLKGKDDSATKSAKARKVQF-SEGL------FESRSNGP- 47
Query: 66 ETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGI 125
T GGKGDKVANG K S K+ E RV+QELP+N KCLMDCEAA +L+GI
Sbjct: 48 ---------TSGGKGDKVANGGKSSAAKDPHQFEHRVDQELPENFKCLMDCEAAVMLQGI 98
Query: 126 QEQMALLSADPTIKIPVSFDKGL--LYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVI 183
Q+QM LS DP+IK+P SFDKGL + + S ++NP++V+ + L H +T+ EICVI
Sbjct: 99 QDQMVALSRDPSIKMPASFDKGLYYAKSSSSSKYSNPESVRHTLEPLMNHDLTESEICVI 158
Query: 184 ANICPETVEEAYAIVPSLK 202
AN+CPET +E +A++PSLK
Sbjct: 159 ANVCPETADEVFALLPSLK 177
>gi|357448135|ref|XP_003594343.1| DNA-directed RNA polymerase II subunit rpb4 [Medicago truncatula]
gi|124360902|gb|ABN08874.1| RNA polymerase Rpb4 [Medicago truncatula]
gi|355483391|gb|AES64594.1| DNA-directed RNA polymerase II subunit rpb4 [Medicago truncatula]
Length = 223
Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 119/174 (68%), Gaps = 19/174 (10%)
Query: 31 DDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANGAKVS 90
DD++ KS + RKVQF +EGL F S+S+G T GGKGDKVANG K S
Sbjct: 43 DDSATKSAKARKVQF-SEGL------FESRSNGP----------TSGGKGDKVANGGKSS 85
Query: 91 VVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGL-- 148
K+ E RV+QELP+N KCLMDCEAA +L+GIQ+QM LS DP+IK+P SFDKGL
Sbjct: 86 AAKDPHQFEHRVDQELPENFKCLMDCEAAVMLQGIQDQMVALSRDPSIKMPASFDKGLYY 145
Query: 149 LYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ + S ++NP++V+ + L H +T+ EICVIAN+CPET +E +A++PSLK
Sbjct: 146 AKSSSSSKYSNPESVRHTLEPLMNHDLTESEICVIANVCPETADEVFALLPSLK 199
>gi|297804626|ref|XP_002870197.1| At4g15950 [Arabidopsis lyrata subsp. lyrata]
gi|297316033|gb|EFH46456.1| At4g15950 [Arabidopsis lyrata subsp. lyrata]
Length = 210
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 85/192 (44%), Positives = 119/192 (61%), Gaps = 13/192 (6%)
Query: 13 GGGGKTSLKSIPASL--GGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYG 70
G G K+SLKS L GGKD NS K K+GRK+ F+ +G + +G +
Sbjct: 6 GKGLKSSLKSKDGFLVAGGKDGNSTKLKKGRKIHFD-QGTPPPNYKIL---NGSSDPLPF 61
Query: 71 KGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMA 130
+ K GKGDK +K S+ EL+ +LP+NA+C+MDCEA IL+GI+ +
Sbjct: 62 QSSAAKVGKGDKPTKSSKNSLQS----FELK---DLPENAECMMDCEAFQILDGIKGHLV 114
Query: 131 LLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPET 190
LS DP+IKIPVS+D+ L Y + H++NPQ+V+ + + L HGV+DGE+CVIAN P+T
Sbjct: 115 GLSEDPSIKIPVSYDRALAYVDSCVHYSNPQSVRKVLEPLKTHGVSDGEMCVIANASPDT 174
Query: 191 VEEAYAIVPSLK 202
V+E A +PSLK
Sbjct: 175 VDEVLAFIPSLK 186
>gi|334186572|ref|NP_193330.2| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
gi|332658269|gb|AEE83669.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
Length = 205
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/192 (42%), Positives = 119/192 (61%), Gaps = 16/192 (8%)
Query: 13 GGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGK-FETTYGK 71
G G K+SLKS GGKD +S K K+GRK+ F+ + SD + F+++ K
Sbjct: 6 GKGLKSSLKS---KDGGKDGSSTKLKKGRKIHFDQRTPPANYKILNVSSDQQPFQSSAAK 62
Query: 72 GGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMAL 131
G K DK +K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+
Sbjct: 63 CG-----KSDKPTKSSKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLVG 110
Query: 132 LSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETV 191
LS DP+IKIPVS+D+ L Y ++ H+TNPQ+V+ + + L +G++DGE+CVIAN E+V
Sbjct: 111 LSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEPLKTYGISDGEMCVIANASSESV 170
Query: 192 EEAYAIVPSLKV 203
+E A +PSLK
Sbjct: 171 DEVLAFIPSLKT 182
>gi|50253574|gb|AAT71989.1| At4g15950 [Arabidopsis thaliana]
gi|51971649|dbj|BAD44489.1| unnamed protein product [Arabidopsis thaliana]
Length = 205
Score = 142 bits (358), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 121/193 (62%), Gaps = 18/193 (9%)
Query: 13 GGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGK--FETTYG 70
G G K+SLKS GGKD +S K K+GRK+ F+ +G + + S + F+++
Sbjct: 6 GKGLKSSLKS---KDGGKDGSSTKLKKGRKIHFD-QGTPPANYKILNVSSDQQPFQSSAA 61
Query: 71 KGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMA 130
K G K DK +K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+
Sbjct: 62 KCG-----KSDKPTKSSKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLV 109
Query: 131 LLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPET 190
LS DP+IKIPVS+D+ L Y ++ H+TNPQ+V+ + + L +G++DGE+CVIAN E+
Sbjct: 110 GLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEPLKTYGISDGEMCVIANASSES 169
Query: 191 VEEAYAIVPSLKV 203
V+E A +PSLK
Sbjct: 170 VDEVLAFIPSLKT 182
>gi|212275294|ref|NP_001130236.1| uncharacterized protein LOC100191330 [Zea mays]
gi|194688634|gb|ACF78401.1| unknown [Zea mays]
gi|194692750|gb|ACF80459.1| unknown [Zea mays]
gi|195621576|gb|ACG32618.1| hypothetical protein [Zea mays]
gi|195623648|gb|ACG33654.1| hypothetical protein [Zea mays]
gi|238014082|gb|ACR38076.1| unknown [Zea mays]
gi|413923710|gb|AFW63642.1| alpha-6-galactosyltransferase, mRNA isoform 1 [Zea mays]
gi|413923711|gb|AFW63643.1| alpha-6-galactosyltransferase, mRNA isoform 2 [Zea mays]
gi|413923712|gb|AFW63644.1| alpha-6-galactosyltransferase, mRNA isoform 3 [Zea mays]
gi|413923713|gb|AFW63645.1| alpha-6-galactosyltransferase, mRNA isoform 4 [Zea mays]
gi|413923714|gb|AFW63646.1| hypothetical protein ZEAMMB73_143964 [Zea mays]
Length = 219
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 103/169 (60%), Gaps = 12/169 (7%)
Query: 46 NTEGLSEGKFTFSSKSDGKFETTYGKGG-----LTKG----GKG---DKVANGAKVSVVK 93
++EG E SKS+GK + K G L+KG GK DK G+ V
Sbjct: 27 DSEGFVEELTPVHSKSNGKASSASLKTGGKASALSKGEASKGKAYSSDKGGKGSSSHAVP 86
Query: 94 EALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKT 153
EL++E ++P N++ LM+CEAA +L+ I E MA+LS DP IKIP SFDK Y+K
Sbjct: 87 TKSDAELKLELDIPPNSRMLMNCEAAELLQEIHEHMAILSEDPKIKIPESFDKAFQYSKD 146
Query: 154 HSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+HFT +VK + L + GV+DGEIC+IANI PETVEE YA+VPSLK
Sbjct: 147 GNHFTTASSVKQAIEPLKKCGVSDGEICMIANIGPETVEEVYALVPSLK 195
>gi|326521954|dbj|BAK04105.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 231
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 99/160 (61%), Gaps = 3/160 (1%)
Query: 47 TEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANGAKVSV--VKEALP-LELRVE 103
T S GK + S G +++ G +KGGK G K S K A+ EL+++
Sbjct: 49 THSKSNGKASSDSLKTGGKGSSFSNGEGSKGGKAFSAGKGGKASASNAKPAMSDAELKLQ 108
Query: 104 QELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAV 163
++ N+K L +CE A +L+ I E MA+LS DP IKIP SFDK LYAK +HFT+ + V
Sbjct: 109 LDMSPNSKLLTNCEVAEMLQKIHEHMAILSEDPKIKIPESFDKAFLYAKEGNHFTSAKLV 168
Query: 164 KGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKV 203
K + L ++GV DGEIC+IANI PET+EE YA++PSLK
Sbjct: 169 KEILGPLKDYGVNDGEICMIANIGPETIEEVYALIPSLKA 208
>gi|215769042|dbj|BAH01271.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 239
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 118/216 (54%), Gaps = 18/216 (8%)
Query: 2 EKGGGGKGGGVGGGGKTSLKSIPASL--GGKDDNSAKSKRGRKVQFNT--EGLSEGKFTF 57
E+G G G S K +P ++ G NS+ + + ++ EG E
Sbjct: 3 ERGSRGFSAASKGKAIASKKDLPMNVFTGSLRQNSSANIPHVNIDSDSDSEGFVEELPRV 62
Query: 58 SSKSDGKFETTYGKGGLTKGGKGD-----------KVANGAKVSVVKEALPLELRVEQEL 106
+SK++GK + K G KG K + A+VS +A EL++E ++
Sbjct: 63 NSKTNGKAASESLKTGGKASSKGQTGKGGNAGKGGKGSASARVSAKSDA---ELKLELDM 119
Query: 107 PKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGL 166
P N+ LM+CE A +L+ I E MA+LS DP IKIP SFDK Y K + F+ Q+VK +
Sbjct: 120 PPNSCILMNCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYVKEGNQFSTAQSVKQV 179
Query: 167 FQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L ++GV+DGE+C+IAN+ PET+EE YA+VPSLK
Sbjct: 180 LDPLRKYGVSDGEMCLIANVGPETIEEVYALVPSLK 215
>gi|218191483|gb|EEC73910.1| hypothetical protein OsI_08747 [Oryza sativa Indica Group]
gi|222623580|gb|EEE57712.1| hypothetical protein OsJ_08195 [Oryza sativa Japonica Group]
Length = 231
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 101/168 (60%), Gaps = 14/168 (8%)
Query: 46 NTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGD-----------KVANGAKVSVVKE 94
++EG E +SK++GK + K G KG K + A+VS +
Sbjct: 43 DSEGFVEELPRVNSKTNGKAASESLKTGGKASSKGQTGKGGNAGKGGKGSASARVSAKSD 102
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
A EL++E ++P N+ LM+CE A +L+ I E MA+LS DP IKIP SFDK Y K
Sbjct: 103 A---ELKLELDMPPNSCILMNCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYVKEG 159
Query: 155 SHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ F+ Q+VK + L ++GV+DGE+C+IAN+ PET+EE YA+VPSLK
Sbjct: 160 NQFSTAQSVKQVLDPLRKYGVSDGEMCLIANVGPETIEEVYALVPSLK 207
>gi|45735999|dbj|BAD13027.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 238
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 103/175 (58%), Gaps = 21/175 (12%)
Query: 46 NTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGD-----------KVANGAKVSVVKE 94
++EG E +SK++GK + K G KG K + A+VS +
Sbjct: 43 DSEGFVEELPRVNSKTNGKAASESLKTGGKASSKGQTGKGGNAGKGGKGSASARVSAKSD 102
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
A EL++E ++P N+ LM+CE A +L+ I E MA+LS DP IKIP SFDK Y K
Sbjct: 103 A---ELKLELDMPPNSCILMNCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYVKEG 159
Query: 155 SHFTNPQAVKGLFQSLS-------EHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ F+ Q+VK + SL+ ++GV+DGE+C+IAN+ PET+EE YA+VPSLK
Sbjct: 160 NQFSTAQSVKQVLDSLTSIRSPLRKYGVSDGEMCLIANVGPETIEEVYALVPSLK 214
>gi|297599854|ref|NP_001047971.2| Os02g0723300 [Oryza sativa Japonica Group]
gi|255671217|dbj|BAF09885.2| Os02g0723300, partial [Oryza sativa Japonica Group]
Length = 128
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 71/98 (72%)
Query: 105 ELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVK 164
++P N+ LM+CE A +L+ I E MA+LS DP IKIP SFDK Y K + F+ Q+VK
Sbjct: 7 DMPPNSCILMNCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYVKEGNQFSTAQSVK 66
Query: 165 GLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ L ++GV+DGE+C+IAN+ PET+EE YA+VPSLK
Sbjct: 67 QVLDPLRKYGVSDGEMCLIANVGPETIEEVYALVPSLK 104
>gi|219888911|gb|ACL54830.1| unknown [Zea mays]
Length = 115
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 67/90 (74%)
Query: 113 LMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSE 172
LM+CEAA +L+ I E MA+LS DP IKIP SFDK Y+K +HFT +VK + L +
Sbjct: 2 LMNCEAAELLQEIHEHMAILSEDPKIKIPESFDKAFQYSKDGNHFTTASSVKQAIEPLKK 61
Query: 173 HGVTDGEICVIANICPETVEEAYAIVPSLK 202
GV+DGEIC+IANI PETVEE YA+VPSLK
Sbjct: 62 CGVSDGEICMIANIGPETVEEVYALVPSLK 91
>gi|28188685|gb|AAN46268.1| unknown protein [Arabidopsis thaliana]
gi|28188693|gb|AAN46272.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 96/162 (59%), Gaps = 21/162 (12%)
Query: 22 SIPASLGGKDDNSAKSKRGRK-VQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKG 80
S+ + GGKD +S K K+G + +S + F S + KGGKG
Sbjct: 1 SLKSKDGGKDGSSTKLKKGTPPANYKILNVSSDQQPFQSSA-------------AKGGKG 47
Query: 81 DKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKI 140
DK +K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+ LS DP+IKI
Sbjct: 48 DKPTKSSKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLVGLSEDPSIKI 100
Query: 141 PVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICV 182
PVS+D+ L Y ++ H+TNPQ+V+ + + L +G++DGE+CV
Sbjct: 101 PVSYDRALAYVESCVHYTNPQSVRKVLEPLKTYGISDGEMCV 142
>gi|28188691|gb|AAN46271.1| unknown protein [Arabidopsis thaliana]
gi|28188695|gb|AAN46273.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 96/162 (59%), Gaps = 21/162 (12%)
Query: 22 SIPASLGGKDDNSAKSKRGRK-VQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKG 80
S+ + GGKD +S K K+G + +S + F S + KGGKG
Sbjct: 1 SLKSKDGGKDGSSTKLKKGTPPANYKILNVSSDQQPFQSSA-------------AKGGKG 47
Query: 81 DKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKI 140
DK +K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+ LS DP+IKI
Sbjct: 48 DKPTKSSKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLVGLSEDPSIKI 100
Query: 141 PVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICV 182
PVS+D+ L Y ++ H+TNPQ+V+ + + L +G++DGE+CV
Sbjct: 101 PVSYDRSLAYVESCVHYTNPQSVRKVLEPLKTYGISDGEMCV 142
>gi|28188699|gb|AAN46275.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 19/161 (11%)
Query: 22 SIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGD 81
S+ + GGKD +S K K+G + K S F+++ KGGKGD
Sbjct: 1 SLKSKDGGKDGSSTKLKKGTPP-------ANYKILSGSSDQQPFQSS-----AAKGGKGD 48
Query: 82 KVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIP 141
K +K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+ LS DP+IKIP
Sbjct: 49 KPTKSSKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLVGLSEDPSIKIP 101
Query: 142 VSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICV 182
VS+D+ L Y ++ H+TNPQ+V+ + + L +G++DGE+CV
Sbjct: 102 VSYDRALAYVESCVHYTNPQSVRKVLEPLKTYGISDGEMCV 142
>gi|28188681|gb|AAN46266.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 19/161 (11%)
Query: 22 SIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGD 81
S+ + GGKD +S K K+G + K S F+++ KGGKGD
Sbjct: 1 SLKSKNGGKDGSSTKLKKGTPP-------ANYKILNGSSDQQPFQSS-----AAKGGKGD 48
Query: 82 KVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIP 141
K +K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+ LS DP+IKIP
Sbjct: 49 KPTKSSKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLVGLSEDPSIKIP 101
Query: 142 VSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICV 182
VS+D+ L Y ++ H+TNPQ+V+ + + L +G++DGE+CV
Sbjct: 102 VSYDRALAYVESCVHYTNPQSVRKVLEPLKTYGISDGEMCV 142
>gi|28188687|gb|AAN46269.1| unknown protein [Arabidopsis thaliana]
gi|28188689|gb|AAN46270.1| unknown protein [Arabidopsis thaliana]
gi|28188697|gb|AAN46274.1| unknown protein [Arabidopsis thaliana]
gi|28188701|gb|AAN46276.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 19/161 (11%)
Query: 22 SIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGD 81
S+ + GGKD +S K K+G + K S F+++ KGGKGD
Sbjct: 1 SLKSKDGGKDGSSTKLKKGTPP-------ANYKILNGSSDQQPFQSS-----AAKGGKGD 48
Query: 82 KVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIP 141
K +K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+ LS DP+IKIP
Sbjct: 49 KPTKSSKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLVGLSEDPSIKIP 101
Query: 142 VSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICV 182
VS+D+ L Y ++ H+TNPQ+V+ + + L +G++DGE+CV
Sbjct: 102 VSYDRALAYVESCVHYTNPQSVRKVLEPLKTYGISDGEMCV 142
>gi|28188703|gb|AAN46277.1| unknown protein [Arabidopsis lyrata]
gi|28188705|gb|AAN46278.1| unknown protein [Arabidopsis lyrata]
Length = 142
Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 89/156 (57%), Gaps = 21/156 (13%)
Query: 28 GGKDDNSAKSKRGRKV-QFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANG 86
GGKD NS K K+G + S F S + +K GKGDK
Sbjct: 7 GGKDGNSTKLKKGTPPPNYKILNGSSDPLPFQSSA-------------SKVGKGDKPTKS 53
Query: 87 AKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDK 146
+K S+ EL+ +LP+NA+C+MDCEA IL+GI+ + LS DP+IKIPVS+D+
Sbjct: 54 SKNSLQS----FELK---DLPENAECMMDCEAFQILDGIKGHLVGLSEDPSIKIPVSYDR 106
Query: 147 GLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICV 182
L Y + H++NPQ+V+ + + L HGV+DGE+CV
Sbjct: 107 ALAYVDSCVHYSNPQSVRKVLEPLKTHGVSDGEMCV 142
>gi|28188683|gb|AAN46267.1| unknown protein [Arabidopsis thaliana]
Length = 142
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 91/156 (58%), Gaps = 21/156 (13%)
Query: 28 GGKDDNSAKSKRGRK-VQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANG 86
GGKD +S K K+G + +S + F S + K GK DK
Sbjct: 7 GGKDGSSTKLKKGTPPANYKILNVSSDQQPFQSSA-------------AKCGKSDKPTKS 53
Query: 87 AKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDK 146
+K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+ LS DP+IKIPVS+D+
Sbjct: 54 SKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDR 106
Query: 147 GLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICV 182
L Y ++ H+TNPQ+V+ + + L +G++DGE+CV
Sbjct: 107 ALAYVESCVHYTNPQSVRKVLEPLKTYGISDGEMCV 142
>gi|217426791|gb|ACK44499.1| AT5G09920-like protein [Arabidopsis arenosa]
Length = 321
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 86/162 (53%), Gaps = 19/162 (11%)
Query: 49 GLSEGKFTF------SSKSDGKFETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRV 102
G E FTF +++ K + L G++ N A++ + E L
Sbjct: 113 GREEAIFTFVVSRKKKPEAEQKRTFRFRFPSLVIAMSGEEEENAAELKIGDEFL------ 166
Query: 103 EQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQA 162
AKCLM+CE + ILE EQ+ +S DP ++ F+K L Y K S + NP A
Sbjct: 167 ------KAKCLMNCEVSLILEHKFEQLQQVSEDPMNQVSQVFEKSLQYVKRFSRYKNPDA 220
Query: 163 VKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKVW 204
V+ + + LS H +T+ E+CV+ N+CPETVEEA A+VPSLK W
Sbjct: 221 VRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLK-W 261
>gi|15242547|ref|NP_196554.1| DNA-directed RNA polymerase II subunit D [Arabidopsis thaliana]
gi|2760362|gb|AAB95261.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]
gi|9758970|dbj|BAB09413.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]
gi|21554212|gb|AAM63291.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]
gi|98960869|gb|ABF58918.1| At5g09920 [Arabidopsis thaliana]
gi|222423668|dbj|BAH19801.1| AT5G09920 [Arabidopsis thaliana]
gi|332004084|gb|AED91467.1| DNA-directed RNA polymerase II subunit D [Arabidopsis thaliana]
Length = 138
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ +S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
NP AV+ + + LS H +T+ E+CV+ N+CPETVEEA A+VPSLK
Sbjct: 70 NPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLK 113
>gi|297807017|ref|XP_002871392.1| RPB15.9 [Arabidopsis lyrata subsp. lyrata]
gi|297317229|gb|EFH47651.1| RPB15.9 [Arabidopsis lyrata subsp. lyrata]
Length = 138
Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ +S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKFEQLQQVSEDPMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
NP AV+ + + LS H +T+ E+CV+ N+CPETVEEA A+VPSLK
Sbjct: 70 NPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLK 113
>gi|51970310|dbj|BAD43847.1| unnamed protein product [Arabidopsis thaliana]
Length = 158
Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 96/158 (60%), Gaps = 18/158 (11%)
Query: 13 GGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGK--FETTYG 70
G G K+SLKS GGKD +S K K+GRK+ F+ +G + + S + F+++
Sbjct: 6 GKGLKSSLKS---KDGGKDGSSTKLKKGRKIHFD-QGTPPANYKILNVSSDQQPFQSS-- 59
Query: 71 KGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMA 130
K GK DK +K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+
Sbjct: 60 ---AAKCGKSDKPTKSSKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLV 109
Query: 131 LLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
LS DP+IKIPVS+D+ L Y ++ H+TNPQ+V+ + +
Sbjct: 110 GLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLE 147
>gi|51971721|dbj|BAD44525.1| unnamed protein product [Arabidopsis thaliana]
Length = 155
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 96/158 (60%), Gaps = 18/158 (11%)
Query: 13 GGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGK--FETTYG 70
G G K+SLKS GGKD +S K K+GRK+ F+ +G + + S + F+++
Sbjct: 3 GKGLKSSLKS---KDGGKDGSSTKLKKGRKIHFD-QGTPPANYKILNVSSDQQPFQSS-- 56
Query: 71 KGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMA 130
K GK DK +K S+ EL+ +LP+NA+C+MDCEA IL+GI+ Q+
Sbjct: 57 ---AAKCGKSDKPTKSSKNSLHS----FELK---DLPENAECMMDCEAFQILDGIKGQLV 106
Query: 131 LLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
LS DP+IKIPVS+D+ L Y ++ H+TNPQ+V+ + +
Sbjct: 107 GLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLE 144
>gi|449441240|ref|XP_004138390.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
gi|449526195|ref|XP_004170099.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
Length = 138
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ +S DPT ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
NP AV+ + + LS + + + E+CV+ N+CPETVEEA A+VPSLK
Sbjct: 70 NPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLK 113
>gi|255562011|ref|XP_002522014.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223538818|gb|EEF40418.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 138
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE A ILE EQ+ +S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVALILEHKYEQLQQMSNDPMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
NP AV+ + + LS + + + E+CV+ N+CPETVEEA A+VPS+K
Sbjct: 70 NPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIK 113
>gi|146403790|gb|ABQ32301.1| putative 15.9 kDa subunit of RNA polymerase II [Artemisia annua]
Length = 138
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + IL+ EQ+ +S DP+ ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
NP AV+ + + LS H + + E+CV+ N+CPETVEEA A+VPS+K
Sbjct: 70 NPDAVRQVRELLSRHQLAEFELCVLGNLCPETVEEAIAMVPSIK 113
>gi|192910802|gb|ACF06509.1| RNA polymerase II 15.9 kDa subunit [Elaeis guineensis]
Length = 138
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ +E K AKCLM+CE A IL+ EQ+ LS DPT +I F+K + Y K S +
Sbjct: 11 ELKIGEEFLK-AKCLMNCEVALILDRKYEQLQQLSDDPTNQISQVFEKSMQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
N AV+ + + LS + + + E+CV+ N+CPETVEEA A+VPS+K
Sbjct: 70 NQDAVRQVREILSRYRLAEFELCVLGNLCPETVEEAIAMVPSIK 113
>gi|225446712|ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Vitis
vinifera]
gi|147856183|emb|CAN80281.1| hypothetical protein VITISV_017448 [Vitis vinifera]
gi|302143481|emb|CBI22042.3| unnamed protein product [Vitis vinifera]
Length = 138
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE A ILE EQ+ +S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVAVILEHKYEQLQQMSDDPLNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
NP AV+ + + LS + + + E+CV+ N+CPETVEEA A+VPS+K
Sbjct: 70 NPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIK 113
>gi|224083811|ref|XP_002307132.1| predicted protein [Populus trichocarpa]
gi|224096326|ref|XP_002310604.1| predicted protein [Populus trichocarpa]
gi|222853507|gb|EEE91054.1| predicted protein [Populus trichocarpa]
gi|222856581|gb|EEE94128.1| predicted protein [Populus trichocarpa]
Length = 138
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 63/93 (67%)
Query: 110 AKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQS 169
AKCLM+CE A ILE EQ+ +S DP ++ F+K L Y K S + NP AV+ + +
Sbjct: 21 AKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREI 80
Query: 170 LSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
LS + + + E+CV+ N+CPETVEEA A+VPS+K
Sbjct: 81 LSRYQLAEFELCVLGNLCPETVEEAIAMVPSIK 113
>gi|449482280|ref|XP_004156236.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
Length = 139
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ + DPT ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
NP AV+ + + LS + + + E+CV+ N+CPETVEEA +IVPSLK
Sbjct: 70 NPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEATSIVPSLK 113
>gi|449447482|ref|XP_004141497.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus]
Length = 138
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ + DPT ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
NP AV+ + + LS + + + E+CV+ N+CPETVEEA +IVPSLK
Sbjct: 70 NPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEATSIVPSLK 113
>gi|351727683|ref|NP_001237937.1| uncharacterized protein LOC100499661 [Glycine max]
gi|255625623|gb|ACU13156.1| unknown [Glycine max]
Length = 138
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ S DP +I F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQTSDDPMNQISQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
NP AV+ + + L+ + + + E+CV+ N+CPETVEEA A+VPS+K
Sbjct: 70 NPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIK 113
>gi|351724197|ref|NP_001238073.1| uncharacterized protein LOC100527316 [Glycine max]
gi|255632071|gb|ACU16388.1| unknown [Glycine max]
Length = 138
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
NP AV+ + + L+ + + + E+CV+ N+CPETVEEA A+VPS+K
Sbjct: 70 NPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAVVPSIK 113
>gi|351722549|ref|NP_001236224.1| uncharacterized protein LOC100527704 [Glycine max]
gi|255632992|gb|ACU16850.1| unknown [Glycine max]
Length = 195
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE A ILE EQ+ S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVALILEHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
NP AV+ + + L+ + + + E+CV+ N+CPETVEEA A+VPS+K
Sbjct: 70 NPDAVRQVREILARYELAEFELCVLGNLCPETVEEAIAMVPSIK 113
>gi|388495724|gb|AFK35928.1| unknown [Lotus japonicus]
Length = 138
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
NP AV+ + + L+ + + + E+CV+ N+CPETVEEA A+VPS+K
Sbjct: 70 NPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIK 113
>gi|115443807|ref|NP_001045683.1| Os02g0116900 [Oryza sativa Japonica Group]
gi|41052832|dbj|BAD07723.1| putative 15.9 kDa subunit of RNA polymerase II [Oryza sativa
Japonica Group]
gi|113535214|dbj|BAF07597.1| Os02g0116900 [Oryza sativa Japonica Group]
gi|125537811|gb|EAY84206.1| hypothetical protein OsI_05586 [Oryza sativa Indica Group]
gi|125580570|gb|EAZ21501.1| hypothetical protein OsJ_05124 [Oryza sativa Japonica Group]
gi|215768240|dbj|BAH00469.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 142
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 71/105 (67%), Gaps = 2/105 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLS-ADPTIKIPVSFDKGLLYAKTHSHF 157
EL++ +E K AKCLM+CE A ILE EQ+ +S DP+ ++ F+K L Y K S +
Sbjct: 11 ELKIGEEFLK-AKCLMNCEVAIILEHKYEQIQHMSDGDPSSQVSQVFEKSLQYVKRFSRY 69
Query: 158 TNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
NP AV+ + ++LS +G+ + E+C + N+CP+T +EA A+VPSL+
Sbjct: 70 KNPDAVRQVRETLSRYGLAEFELCTLGNLCPDTSDEASALVPSLR 114
>gi|168028875|ref|XP_001766952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681694|gb|EDQ68118.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 142
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 62/92 (67%)
Query: 110 AKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQS 169
AKCLM+ E A +L+ EQ+ L+ DP+ +I F++ L Y + S + NP AVK + +
Sbjct: 26 AKCLMNAEVALVLQRKYEQLQQLADDPSSQISQVFERSLQYVRRFSRYQNPDAVKQVREV 85
Query: 170 LSEHGVTDGEICVIANICPETVEEAYAIVPSL 201
L+ + + + E+CVI N+CPETVEEA A+VPS+
Sbjct: 86 LTRNQLHEFEVCVIGNLCPETVEEAKALVPSI 117
>gi|357513237|ref|XP_003626907.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
gi|355520929|gb|AET01383.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
gi|388497296|gb|AFK36714.1| unknown [Medicago truncatula]
Length = 138
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ S D ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQSSDDAMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
NP AV+ + + L+ + + + E+CV+ N+CPETVEEA A+VPS+K
Sbjct: 70 NPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIK 113
>gi|356558007|ref|XP_003547301.1| PREDICTED: uncharacterized protein LOC100775535 [Glycine max]
Length = 174
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 104/206 (50%), Gaps = 60/206 (29%)
Query: 1 MEKGGGGKG----GGVGGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFT 56
MEKGG G GG+G S GKDD++ KS + R VQF+++G S
Sbjct: 1 MEKGGKGASLFSKGGLG------------SQKGKDDSATKSAKKRMVQFSSDGPSFESGV 48
Query: 57 FSSKSDGKFETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDC 116
SS + + KGGKGD VANG K S K++ + RV+Q+LP+N KCL+DC
Sbjct: 49 SSS-------SLPSQKSGGKGGKGDNVANGGKSSQSKDSHSSDHRVDQKLPENIKCLIDC 101
Query: 117 EAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVT 176
EA IL+GIQE+M L++ G+T
Sbjct: 102 EAVDILQGIQERM-------------------------------------ISPLAKCGLT 124
Query: 177 DGEICVIANICPETVEEAYAIVPSLK 202
D EICVI N+CPET++E +A++PSLK
Sbjct: 125 DSEICVIGNVCPETIDEVFALLPSLK 150
>gi|242063790|ref|XP_002453184.1| hypothetical protein SORBIDRAFT_04g001250 [Sorghum bicolor]
gi|241933015|gb|EES06160.1| hypothetical protein SORBIDRAFT_04g001250 [Sorghum bicolor]
Length = 143
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 70/106 (66%), Gaps = 3/106 (2%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSA--DPTIKIPVSFDKGLLYAKTHSH 156
EL++ +E K AKCLM+CE A ILE EQ+ S+ DP+ ++ F+K L Y K S
Sbjct: 11 ELKIGEEFLK-AKCLMNCEVAIILEHKYEQIQQHSSESDPSSQVSQVFEKSLQYVKRFSR 69
Query: 157 FTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ NP AV+ + ++LS +G+ + E+C + N+CP+T EA A+VPSLK
Sbjct: 70 YKNPDAVRQVRETLSRYGLAEFELCTLGNLCPDTSGEATALVPSLK 115
>gi|301298709|gb|ADK66819.1| putative RNA polymerase II subunit [Saccharum hybrid cultivar
SP80-3280]
Length = 143
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 70/106 (66%), Gaps = 3/106 (2%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSA--DPTIKIPVSFDKGLLYAKTHSH 156
EL++ +E K AKCLM+CE A ILE EQ+ S+ DP+ ++ F+K L Y K S
Sbjct: 11 ELKIGEEFLK-AKCLMNCEVAIILEHKYEQILQHSSESDPSSQVSQVFEKSLQYVKRFSR 69
Query: 157 FTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ NP AV+ + ++LS +G+ + E+C + N+CP+T EA A+VPSLK
Sbjct: 70 YKNPDAVRQVRETLSRYGLAEFELCTLGNLCPDTSGEATALVPSLK 115
>gi|226497040|ref|NP_001148722.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|226958433|ref|NP_001152952.1| LOC100285981 [Zea mays]
gi|195607822|gb|ACG25741.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|195621652|gb|ACG32656.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|195655327|gb|ACG47131.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Zea mays]
gi|223946753|gb|ACN27460.1| unknown [Zea mays]
gi|413926837|gb|AFW66769.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 144
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 70/107 (65%), Gaps = 4/107 (3%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQM---ALLSADPTIKIPVSFDKGLLYAKTHS 155
EL++ +E K AKCLM+CE A ILE EQ+ A +DP+ ++ F+K L Y K S
Sbjct: 11 ELKIGEEFLK-AKCLMNCEVAIILEHKYEQIQQHASSESDPSSQVSQVFEKSLQYVKRFS 69
Query: 156 HFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ NP AV+ + ++LS +G+ + E+C + N+CP+T EA A+VPSLK
Sbjct: 70 RYKNPDAVRQVRETLSRYGLAEFELCTLGNLCPDTSGEATALVPSLK 116
>gi|357144504|ref|XP_003573316.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Brachypodium distachyon]
Length = 141
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLS---ADPTIKIPVSFDKGLLYAKTHS 155
EL++ +E K AK LM+CE A ILE EQ+ +S DP+ ++ F+K L Y K S
Sbjct: 11 ELKIGEEFLK-AKSLMNCEVAIILEHRYEQLQQMSDGGGDPSSQMSQVFEKSLGYVKRFS 69
Query: 156 HFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSL 201
+ NP AV+ + ++LS +G+ + E+C + N+CP+T +EA A+VPSL
Sbjct: 70 RYKNPDAVRQVRETLSRYGLHEFELCTLGNLCPDTADEAKALVPSL 115
>gi|302768831|ref|XP_002967835.1| hypothetical protein SELMODRAFT_144908 [Selaginella moellendorffii]
gi|302799846|ref|XP_002981681.1| hypothetical protein SELMODRAFT_115080 [Selaginella moellendorffii]
gi|300150513|gb|EFJ17163.1| hypothetical protein SELMODRAFT_115080 [Selaginella moellendorffii]
gi|300164573|gb|EFJ31182.1| hypothetical protein SELMODRAFT_144908 [Selaginella moellendorffii]
Length = 136
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 59/91 (64%)
Query: 111 KCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSL 170
KCLM+ E A IL+ + +S DP+ ++ F+K Y K S + NP+AV+ + + L
Sbjct: 21 KCLMNAEVAKILQHKYDTANQMSDDPSSQLSQVFEKSFAYVKRFSRYKNPEAVQQVREVL 80
Query: 171 SEHGVTDGEICVIANICPETVEEAYAIVPSL 201
S + + + E+CV+ N+CPETVEEA A+VPS+
Sbjct: 81 SRNQLAEFEVCVLGNLCPETVEEATALVPSI 111
>gi|357513239|ref|XP_003626908.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
gi|355520930|gb|AET01384.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
Length = 114
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 57/89 (64%)
Query: 114 MDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEH 173
M+CE + ILE EQ+ S D ++ F+K L Y K S + NP AV+ + + L+ +
Sbjct: 1 MNCEVSLILEHKYEQLQQSSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILARY 60
Query: 174 GVTDGEICVIANICPETVEEAYAIVPSLK 202
+ + E+CV+ N+CPETVEEA A+VPS+K
Sbjct: 61 QLAEFELCVLGNLCPETVEEAIAMVPSIK 89
>gi|356525584|ref|XP_003531404.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB4-like [Glycine max]
Length = 136
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Query: 89 VSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGL 148
+ V KE EL++ E K AKCLM+CE A I E Q+ +S DP ++ F+K
Sbjct: 1 MYVEKEENAAELKIGDEFLK-AKCLMNCEVALIPEHKYXQLQQISDDPMNQVSQVFEKSQ 59
Query: 149 LYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
Y K S + NP AV+ + L+ + + + E+CV+ N+C ETVEEA A+VPS++
Sbjct: 60 QYVKRFSRYKNPDAVRD--KILARYQLAEFELCVLGNLCLETVEEAIAMVPSIE 111
>gi|72255603|gb|AAZ66921.1| 117M18_2 [Brassica rapa]
Length = 329
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 64/116 (55%), Gaps = 27/116 (23%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADP-----TIKIPVS-------FDK 146
EL++ E K AKCLM+CE + ILE EQ+ +S DP T+K+ + F+K
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQVSEDPMNQRFTVKLAIKRYRSCWVFEK 69
Query: 147 GLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L Y K S + NP AV+ ++CV+ N+CPET EEA A+VPSLK
Sbjct: 70 SLQYVKRFSRYKNPDAVR--------------QLCVLGNLCPETAEEAVAMVPSLK 111
>gi|440804477|gb|ELR25354.1| DNAdirected RNA polymerase II subunit rpb4, putative [Acanthamoeba
castellanii str. Neff]
Length = 135
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA CL++ E A +LE Q Q A + + ++ F K L Y + S + AVK +
Sbjct: 20 QNANCLLNSEVAILLEHRQ-QTAAVQEEGEAELSNVFLKTLSYVQRFSRYKTKAAVKEVR 78
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSL 201
L+E + + EI ++N+CPET EEA +++PSL
Sbjct: 79 SLLTEKELEEFEIAALSNLCPETAEEAKSLIPSL 112
>gi|330790380|ref|XP_003283275.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325086822|gb|EGC40206.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 138
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
K+AK L++ E A +LE L S + ++ +F K L YA+ S + N ++K +
Sbjct: 27 KDAKFLLNSEVAILLE----HRKLGSENEGLEFTQTFHKTLAYAEKFSRYKNKTSIKQVR 82
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+LS+ + + +I +AN+CPET +EA +++PSLK
Sbjct: 83 AALSKQNLEEFQIASLANLCPETADEAKSLIPSLK 117
>gi|328873268|gb|EGG21635.1| DNA-directed RNA polymerase II subunit 4 [Dictyostelium
fasciculatum]
Length = 138
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 105 ELPKN---AKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQ 161
+ PK+ AK L++ E A LE +E ++ + P +F K L YA+ S + N
Sbjct: 21 QFPKDLQQAKFLLNSEVAIFLECRKE----FESENQTEFPQTFHKTLAYAERFSRYKNKT 76
Query: 162 AVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKVW 204
++K + +LS+ + + EI +AN+CPE +EA +++ SLK +
Sbjct: 77 SIKQVRAALSKQNLHEFEIASLANLCPENSDEAKSLIVSLKRF 119
>gi|395331653|gb|EJF64033.1| RNA polymerase II [Dichomitus squalens LYAD-421 SS1]
Length = 134
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 8/94 (8%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E ++LE + A + D + ++K L Y KT + F P+A + +
Sbjct: 25 NAGCLLISEVRYLLEHRPSEKA--APDTAV-----YNKTLEYVKTFAKFDKPEAAAAIRE 77
Query: 169 SLS-EHGVTDGEICVIANICPETVEEAYAIVPSL 201
+L E +T EI IAN+CP T EEA +IVPSL
Sbjct: 78 TLRRESALTQFEIAQIANLCPVTAEEAKSIVPSL 111
>gi|66812112|ref|XP_640235.1| DNA-directed RNA polymerase II subunit 4 [Dictyostelium discoideum
AX4]
gi|74854885|sp|Q54S04.1|RPB4_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb4;
Short=RNA polymerase II subunit B4; AltName:
Full=DNA-directed RNA polymerase II subunit D
gi|60468219|gb|EAL66229.1| DNA-directed RNA polymerase II subunit 4 [Dictyostelium discoideum
AX4]
Length = 155
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 13/108 (12%)
Query: 108 KNAKCLMDCEAAHILE---GIQEQ----------MALLSADPTIKIPVSFDKGLLYAKTH 154
K+AK L++ E A +LE GI E + L + I +F K L YA+
Sbjct: 27 KDAKFLLNSEVAILLEHRKGISESEGTEFPQNTLLIHLYYNSINDIIRTFHKTLAYAEKF 86
Query: 155 SHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
S + N ++K + +LS+ + + EI +AN+CPE +EA +++PSLK
Sbjct: 87 SRYKNKTSIKQVRTALSKQNLEEFEIASLANLCPEISDEAKSLIPSLK 134
>gi|126320937|ref|XP_001366148.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q S ++PV F K L YA S F N + + +
Sbjct: 27 ETAQTLLNSEVHMLLEHRKQQHE--SGQDARELPVVFWKTLDYAARFSRFQNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSL 201
L + + E+ +AN+CPET EEA A++PSL
Sbjct: 85 GLLLQKKLHKFELAALANLCPETAEEAKALIPSL 118
>gi|281202108|gb|EFA76313.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 747
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 91 VVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLY 150
V++E L L + KNAK L++ E A +LE +E A + P +F K L Y
Sbjct: 617 VIQEEEDLSLLKFPKDLKNAKFLLNSEVAILLECRKE-----FATEGTEFPQTFHKTLAY 671
Query: 151 AKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
A+ S + N ++K + LS+ + + E+ +AN+CPE +EA +++ SLK
Sbjct: 672 AERFSRYKNKASIKQVRGVLSKQDLDEFEVACLANLCPENSDEAKSLIVSLK 723
>gi|126320949|ref|XP_001366431.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q S ++PV F K L YA S F N + + +
Sbjct: 27 ETAQTLLNSEVHMLLEHRKQQHE--SGQDARELPVVFWKTLDYAARFSRFQNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSL 201
L + + E+ +AN+CPET EEA A++PSL
Sbjct: 85 GLLLQKKLHKFEVAALANLCPETAEEAKALIPSL 118
>gi|126320947|ref|XP_001366375.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320951|ref|XP_001366486.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320955|ref|XP_001366545.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320959|ref|XP_001366594.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q S ++PV F K L YA S F N + + +
Sbjct: 27 ETAQTLLNSEVHMLLEHRKQQHE--SGQDARELPVVFWKTLDYAARFSRFQNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSL 201
L + + E+ +AN+CPET EEA A++PSL
Sbjct: 85 GLLLQKKLHKFELAALANLCPETAEEAKALIPSL 118
>gi|126320933|ref|XP_001366024.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320939|ref|XP_001366209.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
gi|126320945|ref|XP_001366315.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q S ++PV F K L YA S F N + + +
Sbjct: 27 ETAQTLLNSEVHMLLEHRKQQHE--SGQDARELPVVFWKTLDYAARFSRFQNRETIARVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSL 201
L + + E+ +AN+CPET EEA A++PSL
Sbjct: 85 GLLLQKKLHKFELAALANLCPETAEEAKALIPSL 118
>gi|126320943|ref|XP_001366258.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 91 VVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLY 150
V +EAL L E E A+ L++ E +LE ++Q S +PV F K L Y
Sbjct: 13 VEEEALQLVFPREFE---TAQTLLNSEVHMLLEHRKQQHE--SGQDARGLPVVFWKTLDY 67
Query: 151 AKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSL 201
A S F N + + + L + + E+ +AN+CPET EEA A++PSL
Sbjct: 68 AARFSRFQNRETIASVRGLLLQKKLHKFELAALANLCPETAEEAKALIPSL 118
>gi|392565043|gb|EIW58220.1| RNA polymerase II [Trametes versicolor FP-101664 SS1]
Length = 134
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 8/94 (8%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E ++LE + A + D ++ + K L Y KT + F P+A + +
Sbjct: 25 NAGCLLISEVRYLLEHRPSEKA--APDTSV-----YKKTLEYVKTFAKFDKPEAAAAIRE 77
Query: 169 SLS-EHGVTDGEICVIANICPETVEEAYAIVPSL 201
+L E +T EI IAN+CP T EE+ +I+PSL
Sbjct: 78 TLRRESDLTQFEIAQIANLCPVTAEESKSIIPSL 111
>gi|388502530|gb|AFK39331.1| unknown [Lotus japonicus]
Length = 83
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL++ E K AKCLM+CE + ILE EQ+ S DP ++ F+K L Y K S +
Sbjct: 11 ELKIGDEFLK-AKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQYVKRFSRYK 69
Query: 159 NPQAVKGL 166
NP AV+ +
Sbjct: 70 NPDAVRQV 77
>gi|308503128|ref|XP_003113748.1| CRE-RPB-4 protein [Caenorhabditis remanei]
gi|308263707|gb|EFP07660.1| CRE-RPB-4 protein [Caenorhabditis remanei]
Length = 144
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 133 SADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVE 192
S D ++ F K L YA+ S F N + ++ + SE + E+ IAN+CPE E
Sbjct: 53 SKDEIEEMSEVFIKTLNYARRMSRFKNRETIRAVRAIFSEKHLHKFEVAQIANLCPENAE 112
Query: 193 EAYAIVPSLK 202
EA A+VPSL+
Sbjct: 113 EAKALVPSLE 122
>gi|193204561|ref|NP_495544.2| Protein RPB-4 [Caenorhabditis elegans]
gi|351021285|emb|CCD63552.1| Protein RPB-4 [Caenorhabditis elegans]
Length = 144
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 133 SADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVE 192
S D ++ F K L YA+ S F N + ++ + SE + E+ IAN+CPE E
Sbjct: 53 SKDEIEEMSEVFIKTLNYARRMSRFKNRETIRAVRAIFSEKHLHKFEVAQIANLCPENAE 112
Query: 193 EAYAIVPSLK 202
EA A+VPSL+
Sbjct: 113 EAKALVPSLE 122
>gi|341899791|gb|EGT55726.1| hypothetical protein CAEBREN_32834 [Caenorhabditis brenneri]
Length = 144
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%)
Query: 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
F K L YA+ S F N + ++ + SE + EI IAN+CPE EEA A+VPSL+
Sbjct: 64 FIKTLNYARRMSRFKNRETIRAVRAIFSEKHLHKFEIAQIANLCPENAEEAKALVPSLE 122
>gi|126320935|ref|XP_001366087.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQ---AVK 164
+ A+ L++ E +LE ++Q S ++PV F K L YA S F N + +V+
Sbjct: 27 ETAQTLLNSEVHMLLEHRKQQHE--SGQDARELPVVFWKTLDYAARFSRFQNRETIASVR 84
Query: 165 GLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSL 201
GL H + +AN+CPET EEA A++PSL
Sbjct: 85 GLLLQKKLHKFV---LAALANLCPETAEEAKALIPSL 118
>gi|268562714|ref|XP_002646754.1| C. briggsae CBR-RPB-4 protein [Caenorhabditis briggsae]
Length = 148
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
F K L YA+ S F N + ++ + SE + E+ IAN+CPE EEA A+VPSL+
Sbjct: 68 FIKTLNYARRMSRFKNRETIRAVRAIFSEKHLHKFEVAQIANLCPENAEEAKALVPSLE 126
>gi|260841580|ref|XP_002613990.1| hypothetical protein BRAFLDRAFT_113736 [Branchiostoma floridae]
gi|229299380|gb|EEN69999.1| hypothetical protein BRAFLDRAFT_113736 [Branchiostoma floridae]
Length = 142
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 105 ELPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQ 161
+ PK NA+ L++ E +LE ++Q SA+ ++ F K L Y S F N +
Sbjct: 21 QFPKEFENAETLLNSEVNMLLEHRKQQNE--SAEEEQELSEVFMKTLGYTSRFSRFKNRE 78
Query: 162 AVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ + L + + E+ +AN+CPE+ EEA +++PSL+
Sbjct: 79 TIAAVRSLLMQKKLHKFELAALANLCPESAEEAKSLIPSLE 119
>gi|225706322|gb|ACO09007.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Osmerus mordax]
Length = 144
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 29 ENAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 86
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPE EEA A++PSL+
Sbjct: 87 SLLLQKKLHKFELASLANLCPEAAEEAKALIPSLE 121
>gi|317593877|ref|NP_001187972.1| DNA-directed RNA polymerase II subunit rpb4 [Ictalurus punctatus]
gi|308322187|gb|ADO28231.1| DNA-directed RNA polymerase II subunit rpb4 [Ictalurus furcatus]
gi|308324485|gb|ADO29377.1| DNA-directed RNA polymerase II subunit rpb4 [Ictalurus punctatus]
Length = 141
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 26 ENAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 83
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPE EEA A++PSL+
Sbjct: 84 SLLLQKKLHKFELASLANLCPEAAEEAKALIPSLE 118
>gi|348540766|ref|XP_003457858.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Oreochromis niloticus]
Length = 144
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 29 ENAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETITAVR 86
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPE EEA A++PSL+
Sbjct: 87 SLLLQKKLHKFELASLANLCPEAAEEAKALIPSLE 121
>gi|50539702|ref|NP_001002317.1| DNA-directed RNA polymerase II subunit RPB4 [Danio rerio]
gi|49619057|gb|AAT68113.1| RNA polymerase II subunit D [Danio rerio]
gi|66267586|gb|AAH95261.1| Polymerase (RNA) II (DNA directed) polypeptide D [Danio rerio]
gi|182888836|gb|AAI64278.1| Polr2d protein [Danio rerio]
Length = 141
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 26 ENAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 83
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPE EEA A++PSL+
Sbjct: 84 SLLLQKKLHKFELASLANLCPEAAEEAKALIPSLE 118
>gi|410910710|ref|XP_003968833.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Takifugu rubripes]
Length = 142
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ENAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIAAVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPE EEA A++PSL+
Sbjct: 85 SLLLQKKLHKFELASLANLCPEAAEEAKALIPSLE 119
>gi|225716064|gb|ACO13878.1| DNA-directed RNA polymerase II subunit RPB4 [Esox lucius]
Length = 143
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 28 ENAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIGSVR 85
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPE EEA A++PSL+
Sbjct: 86 SLLLQKKLHKFELASLANLCPEAAEEAKALIPSLE 120
>gi|346469949|gb|AEO34819.1| hypothetical protein [Amblyomma maculatum]
Length = 144
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 103 EQELPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTN 159
E + PK NA+ L+ E +LE ++Q SA+ ++ F K L Y + S F N
Sbjct: 21 ELQFPKEFENAETLLISEVHMLLEHRKQQNE--SAEEEQELSEVFMKTLGYCQRFSRFKN 78
Query: 160 PQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ + + Q L++ + E+ +AN+CP+ EEA A+VPSL+
Sbjct: 79 RETISAVRQLLAQKKLHRFELAQLANLCPDNPEEARALVPSLE 121
>gi|427786429|gb|JAA58666.1| Putative dna-directed rna polymerase ii [Rhipicephalus pulchellus]
Length = 144
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 103 EQELPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTN 159
E + PK NA+ L+ E +LE ++Q SA+ ++ F K L Y + S F N
Sbjct: 21 ELQFPKEFENAETLLISEVHMLLEHRKQQNE--SAEEEQELSEVFMKTLGYCQRFSRFKN 78
Query: 160 PQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ + + Q L++ + E+ +AN+CP+ EEA A+VPSL+
Sbjct: 79 RETITAVRQLLAQKKLHRFELAQLANLCPDNPEEARALVPSLE 121
>gi|346469951|gb|AEO34820.1| hypothetical protein [Amblyomma maculatum]
Length = 144
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 103 EQELPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTN 159
E + PK NA+ L+ E +LE ++Q SA+ ++ F K L Y + S F N
Sbjct: 21 ELQFPKEFENAETLLISEVHMLLEHRKQQNE--SAEEEQELSEVFMKTLGYCQRFSRFKN 78
Query: 160 PQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ + + Q L++ + E+ +AN+CP+ EEA A+VPSL+
Sbjct: 79 RETISAVRQLLAQKKLHRFELAQLANLCPDNPEEARALVPSLE 121
>gi|198434387|ref|XP_002127588.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide D [Ciona intestinalis]
Length = 145
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
+L+ QE ++A+ L++ E +LE + Q +AD ++ F K L Y + S F
Sbjct: 22 QLQFPQEF-ESAETLLNSEVHMLLEHRKSQNE--NADDEQELSEVFMKTLNYTQRFSRFK 78
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
N + + + L + + E+ +AN+CPET EEA A+VPSL+
Sbjct: 79 NRETITSVRGLLLQKDLHKFELASLANLCPETAEEAKALVPSLE 122
>gi|383851643|ref|XP_003701341.1| PREDICTED: transcriptional adapter 2-alpha-like isoform 1
[Megachile rotundata]
Length = 569
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 100 LRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTN 159
LR+ Q +NA+ L+ E + +LE + Q SA+ + F K L Y F N
Sbjct: 446 LRLAQAEFENAETLLISEVSMLLEHRKAQNE--SAEEEQEFSEVFMKSLTYTNRFRRFKN 503
Query: 160 PQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ + + L + + E+ +AN+CPET EEA A++PSL+
Sbjct: 504 KETIAAVRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLE 546
>gi|358339513|dbj|GAA47564.1| DNA-directed RNA polymerase II subunit RPB4 [Clonorchis sinensis]
Length = 140
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL+ +E +NA LM E +LE +EQ + +++ +F K L YA S F
Sbjct: 15 ELKFPKEF-ENADTLMLSEVKLLLEHRKEQNESATVHE-LELSQAFTKTLNYATQLSRFN 72
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSL 201
N + ++ + LS+ E+ IAN+ P+T EEA A++PSL
Sbjct: 73 NRETIESVRSLLSQKRFHGFELAAIANLLPDTAEEAKALIPSL 115
>gi|395519329|ref|XP_003763803.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Sarcophilus
harrisii]
Length = 142
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EEA A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEEAKALIPSLE 119
>gi|126325917|ref|XP_001366384.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Monodelphis domestica]
Length = 142
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EEA A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEEAKALIPSLE 119
>gi|7503310|pir||T34046 hypothetical protein F43E2.1 - Caenorhabditis elegans
Length = 580
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
F K L YA+ S F N + ++ + SE + E+ IAN+CPE EEA A+VPSL+
Sbjct: 64 FIKTLNYARRMSRFKNRETIRAVRAIFSEKHLHKFEVAQIANLCPENAEEAKALVPSLE 122
>gi|449272625|gb|EMC82454.1| DNA-directed RNA polymerase II subunit RPB4, partial [Columba
livia]
Length = 118
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 3 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 60
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EEA A+VPSL+
Sbjct: 61 SLLLQKKLHKFELACLANLCPETAEEAKALVPSLE 95
>gi|197129913|gb|ACH46411.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
Length = 142
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDKQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EEA A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEEAKALIPSLE 119
>gi|350538413|ref|NP_001232096.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
gi|118094833|ref|XP_422576.2| PREDICTED: uncharacterized protein LOC424754 [Gallus gallus]
gi|326925590|ref|XP_003208995.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Meleagris gallopavo]
gi|197127794|gb|ACH44292.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
gi|197127795|gb|ACH44293.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
gi|197127796|gb|ACH44294.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
Length = 142
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EEA A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEEAKALIPSLE 119
>gi|327267294|ref|XP_003218437.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Anolis
carolinensis]
Length = 142
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EEA A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEEAKALIPSLE 119
>gi|83754528|pdb|2C35|A Chain A, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754530|pdb|2C35|C Chain C, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754532|pdb|2C35|E Chain E, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754534|pdb|2C35|G Chain G, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
Length = 152
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 37 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 94
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EE+ A++PSL+
Sbjct: 95 SLLLQKKLHKFELACLANLCPETAEESKALIPSLE 129
>gi|238231374|ref|NP_001154121.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Oncorhynchus
mykiss]
gi|225704188|gb|ACO07940.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Oncorhynchus
mykiss]
Length = 143
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 28 ENAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 85
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPE EEA A++PS++
Sbjct: 86 SLLLQKKLHKFELASLANLCPEAAEEAKALIPSVE 120
>gi|291387945|ref|XP_002710495.1| PREDICTED: DNA directed RNA polymerase II polypeptide D
[Oryctolagus cuniculus]
Length = 142
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLTYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EE+ A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLE 119
>gi|291226512|ref|XP_002733236.1| PREDICTED: DNA directed RNA polymerase II polypeptide D-like
[Saccoglossus kowalevskii]
Length = 141
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 11/116 (9%)
Query: 96 LPLELRVEQE------LPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDK 146
+P++L+ E+E PK A+ L++ E +LE + Q SA+ ++ F K
Sbjct: 5 MPVDLQHEEEDASELKFPKEFEQAETLLNSEVHMLLEHRKAQNE--SAEEEQELSEVFMK 62
Query: 147 GLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L Y + S F N + + + L + + E+ I+N+CPE+ EEA A++PSL+
Sbjct: 63 TLNYTQRFSRFKNRETITEVRSLLMQKKLHKFELSSISNLCPESAEEAKALIPSLE 118
>gi|241727036|ref|XP_002413767.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
gi|215507583|gb|EEC17075.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
gi|442756991|gb|JAA70654.1| Putative dna-directed rna polymerase ii [Ixodes ricinus]
Length = 144
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+CL+ E +LE ++Q SA+ ++ F K L Y + S F N + + +
Sbjct: 29 ENAECLLISEVNMLLEHRKQQNE--SAEEEQELSEVFMKTLSYCQRFSRFKNRETITAVR 86
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E +AN+CP+ EEA A++PSL+
Sbjct: 87 NLLKQKKLHKFEAAQLANLCPDNPEEAKALIPSLE 121
>gi|226443030|ref|NP_001140015.1| DNA-directed RNA polymerase II subunit RPB4 [Salmo salar]
gi|221221172|gb|ACM09247.1| DNA-directed RNA polymerase II subunit RPB4 [Salmo salar]
Length = 143
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 28 ENAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 85
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPE EEA A++PS++
Sbjct: 86 SLLLQKKLHKFELASLANLCPEAAEEAKALIPSVE 120
>gi|354497575|ref|XP_003510895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cricetulus griseus]
Length = 158
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Query: 81 DKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKI 140
D + + A++ +K L L E A+ L++ E +LE ++Q SA+ ++
Sbjct: 21 DHLVSAAQILELKFTLALLAEFE-----TAETLLNSEVHMLLEHRKQQNE--SAEDEQEL 73
Query: 141 PVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPS 200
F K L Y S F N + + + L + + E+ +AN+CPET EE+ A++PS
Sbjct: 74 SEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPS 133
Query: 201 LK 202
L+
Sbjct: 134 LE 135
>gi|340722607|ref|XP_003399695.1| PREDICTED: transcriptional adapter 2-alpha-like [Bombus terrestris]
Length = 569
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 100 LRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTN 159
LR+ Q +NA+ L+ E +LE + Q SA+ + F K L Y F N
Sbjct: 446 LRLAQAEFENAETLLISEVLMLLEHRKAQNE--SAEEEQEFSEVFMKSLTYTNRFRRFKN 503
Query: 160 PQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ + + L + + E+ +AN+CPET EEA A++PSL+
Sbjct: 504 KETIAAVRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLE 546
>gi|350418623|ref|XP_003491918.1| PREDICTED: transcriptional adapter 2-alpha-like [Bombus impatiens]
Length = 569
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 100 LRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTN 159
LR+ Q +NA+ L+ E +LE + Q SA+ + F K L Y F N
Sbjct: 446 LRLAQAEFENAETLLISEVLMLLEHRKAQNE--SAEEEQEFSEVFMKSLTYTNRFRRFKN 503
Query: 160 PQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ + + L + + E+ +AN+CPET EEA A++PSL+
Sbjct: 504 KETIAAVRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLE 546
>gi|328787524|ref|XP_391932.4| PREDICTED: transcriptional adapter 2-alpha-like [Apis mellifera]
Length = 569
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 100 LRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTN 159
LR+ Q +NA+ L+ E +LE + Q SA+ + F K L Y F N
Sbjct: 446 LRLAQAEFENAETLLISEVYMLLEHRKAQNE--SAEEEQEFSEVFMKSLTYTNRFRRFKN 503
Query: 160 PQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ + + L + + E+ +AN+CPET EEA A++PSL+
Sbjct: 504 KETIAAVRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLE 546
>gi|395855890|ref|XP_003800379.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Otolemur
garnettii]
Length = 142
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTSRFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EE+ A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLE 119
>gi|380027418|ref|XP_003697421.1| PREDICTED: transcriptional adapter 2-alpha-like [Apis florea]
Length = 569
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 100 LRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTN 159
LR+ Q +NA+ L+ E +LE + Q SA+ + F K L Y F N
Sbjct: 446 LRLAQAEFENAETLLISEVYMLLEHRKAQNE--SAEEEQEFSEVFMKSLTYTNRFRRFKN 503
Query: 160 PQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ + + L + + E+ +AN+CPET EEA A++PSL+
Sbjct: 504 KETIAAVRNLLMQKKLHKFELASLANLCPETPEEAKALIPSLE 546
>gi|344290054|ref|XP_003416754.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Loxodonta africana]
Length = 142
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EE+ A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLE 119
>gi|426220671|ref|XP_004004537.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Ovis aries]
Length = 142
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EE+ A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLE 119
>gi|392306987|ref|NP_001254716.1| DNA-directed RNA polymerase II subunit RPB4 [Macaca mulatta]
gi|402892232|ref|XP_003909323.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Papio
anubis]
gi|355566071|gb|EHH22500.1| hypothetical protein EGK_05780 [Macaca mulatta]
gi|355751666|gb|EHH55921.1| hypothetical protein EGM_05224 [Macaca fascicularis]
gi|380808166|gb|AFE75958.1| DNA-directed RNA polymerase II subunit RPB4 [Macaca mulatta]
gi|383410355|gb|AFH28391.1| DNA-directed RNA polymerase II subunit RPB4 [Macaca mulatta]
gi|384943808|gb|AFI35509.1| DNA-directed RNA polymerase II subunit RPB4 [Macaca mulatta]
Length = 142
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EE+ A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLE 119
>gi|148233814|ref|NP_001087315.1| polymerase (RNA) II (DNA directed) polypeptide D [Xenopus laevis]
gi|51873947|gb|AAH78547.1| MGC85403 protein [Xenopus laevis]
Length = 142
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
++A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ESAETLLNSEVHMLLEHRKQQNE--SAEEEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET +EA A++PSL+
Sbjct: 85 SLLLQKKLHRFELACLANLCPETADEAKALIPSLE 119
>gi|115497864|ref|NP_001069926.1| DNA-directed RNA polymerase II subunit RPB4 [Bos taurus]
gi|94574089|gb|AAI16156.1| Polymerase (RNA) II (DNA directed) polypeptide D [Bos taurus]
gi|296490760|tpg|DAA32873.1| TPA: RNA polymerase II polypeptide D [Bos taurus]
gi|440907193|gb|ELR57366.1| DNA-directed RNA polymerase II subunit RPB4 [Bos grunniens mutus]
Length = 142
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EE+ A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLE 119
>gi|4758574|ref|NP_004796.1| DNA-directed RNA polymerase II subunit RPB4 [Homo sapiens]
gi|21312246|ref|NP_081278.1| DNA-directed RNA polymerase II subunit RPB4 isoform 1 [Mus
musculus]
gi|157820569|ref|NP_001102356.1| DNA-directed RNA polymerase II subunit RPB4 [Rattus norvegicus]
gi|354459066|ref|NP_001238888.1| DNA-directed RNA polymerase II subunit RPB4 [Pan troglodytes]
gi|73984138|ref|XP_540983.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Canis lupus
familiaris]
gi|297668367|ref|XP_002812414.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Pongo
abelii]
gi|301784665|ref|XP_002927746.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Ailuropoda melanoleuca]
gi|332258210|ref|XP_003278192.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Nomascus
leucogenys]
gi|410968462|ref|XP_003990724.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Felis
catus]
gi|426337134|ref|XP_004032578.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Gorilla
gorilla gorilla]
gi|3024558|sp|O15514.1|RPB4_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB4;
Short=RNA polymerase II subunit B4; AltName:
Full=DNA-directed RNA polymerase II subunit D; AltName:
Full=RNA polymerase II 16 kDa subunit; Short=RPB16
gi|50401678|sp|Q9D7M8.2|RPB4_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB4;
Short=RNA polymerase II subunit B4; AltName:
Full=DNA-directed RNA polymerase II subunit D
gi|2253633|gb|AAC80226.1| RNA polymerase II subunit hsRPB4 [Homo sapiens]
gi|2253635|gb|AAC52056.1| RNA polymerase II subunit hsRPB4 [Homo sapiens]
gi|12847830|dbj|BAB27725.1| unnamed protein product [Mus musculus]
gi|16877972|gb|AAH17205.1| Polymerase (RNA) II (DNA directed) polypeptide D [Homo sapiens]
gi|62739523|gb|AAH93795.1| Polymerase (RNA) II (DNA directed) polypeptide D [Homo sapiens]
gi|62739756|gb|AAH93797.1| Polymerase (RNA) II (DNA directed) polypeptide D [Homo sapiens]
gi|119615750|gb|EAW95344.1| polymerase (RNA) II (DNA directed) polypeptide D, isoform CRA_a
[Homo sapiens]
gi|119615751|gb|EAW95345.1| polymerase (RNA) II (DNA directed) polypeptide D, isoform CRA_a
[Homo sapiens]
gi|148664625|gb|EDK97041.1| polymerase (RNA) II (DNA directed) polypeptide D [Mus musculus]
gi|149017124|gb|EDL76175.1| polymerase (RNA) II (DNA directed) polypeptide D (predicted)
[Rattus norvegicus]
gi|208967080|dbj|BAG73554.1| polymerase (RNA) II (DNA directed) polypeptide D [synthetic
construct]
gi|281342733|gb|EFB18317.1| hypothetical protein PANDA_017559 [Ailuropoda melanoleuca]
gi|410214932|gb|JAA04685.1| polymerase (RNA) II (DNA directed) polypeptide D [Pan troglodytes]
gi|410259190|gb|JAA17561.1| polymerase (RNA) II (DNA directed) polypeptide D [Pan troglodytes]
gi|410287726|gb|JAA22463.1| polymerase (RNA) II (DNA directed) polypeptide D [Pan troglodytes]
gi|410350453|gb|JAA41830.1| polymerase (RNA) II (DNA directed) polypeptide D [Pan troglodytes]
gi|444721464|gb|ELW62200.1| DNA-directed RNA polymerase II subunit RPB4 [Tupaia chinensis]
Length = 142
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EE+ A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLE 119
>gi|431907394|gb|ELK11340.1| DNA-directed RNA polymerase II subunit RPB4 [Pteropus alecto]
Length = 149
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 34 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 91
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EE+ A++PSL+
Sbjct: 92 SLLLQKKLHKFELACLANLCPETAEESKALIPSLE 126
>gi|226372342|gb|ACO51796.1| DNA-directed RNA polymerase II subunit RPB4 [Rana catesbeiana]
Length = 142
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
++A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ESAETLLNSEVHMLLEHRKQQNE--SAEEEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET +EA A++PSL+
Sbjct: 85 SLLLQKKLHRFELACLANLCPETADEAKALIPSLE 119
>gi|62858949|ref|NP_001016248.1| polymerase (RNA) II (DNA directed) polypeptide D [Xenopus
(Silurana) tropicalis]
gi|189441952|gb|AAI67274.1| polymerase (RNA) II (DNA directed) polypeptide D [Xenopus
(Silurana) tropicalis]
gi|189442580|gb|AAI67273.1| polymerase (RNA) II (DNA directed) polypeptide D [Xenopus
(Silurana) tropicalis]
Length = 142
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
++A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ESAETLLNSEVHMLLEHRKQQNE--SAEEEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET +EA A++PSL+
Sbjct: 85 SLLLQKKLHRFELACLANLCPETADEAKALIPSLE 119
>gi|405964873|gb|EKC30315.1| DNA-directed RNA polymerase II subunit RPB4 [Crassostrea gigas]
Length = 145
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 86 GAKVSVVKEALPLELRVEQELPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPV 142
A+ V EA P E E + PK NA+ L+ E +LE + Q SA+ ++
Sbjct: 6 SAQQQNVSEA-PEEDAAELQFPKEFENAETLLISEVQMLLEHRKTQNE--SAEEEQELSE 62
Query: 143 SFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
F K L Y S F N + + + L + + E+ +AN+CP+ EEA +++PSL+
Sbjct: 63 VFMKTLNYTSRFSKFKNRETISAIRSVLMQKKLHKFELAALANLCPDNAEEAKSLIPSLE 122
>gi|345497367|ref|XP_001599421.2| PREDICTED: transcriptional adapter 2-alpha [Nasonia vitripennis]
Length = 569
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA L+ E +LE + Q SA+ + F K L Y F N + + +
Sbjct: 454 ENADTLLISEVHMLLEHRKAQNE--SAEEEQEFSEVFMKSLTYTNRFRKFKNKETIAAVR 511
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
LS+ + E+ IAN+CPET EEA A++PSL+
Sbjct: 512 NLLSQKKLHKFELASIANLCPETPEEAKALIPSLE 546
>gi|91082085|ref|XP_966894.1| PREDICTED: similar to DNA-directed RNA polymerase II 16 kDa
polypeptide [Tribolium castaneum]
gi|270008323|gb|EFA04771.1| hypothetical protein TcasGA2_TC030678 [Tribolium castaneum]
Length = 138
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 105 ELPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQ 161
+ PK NA+ L+ E +LE + Q SA+ + F K L Y F N +
Sbjct: 17 QFPKEFENAETLLISEVHMLLEHRKAQNE--SAEDEQEFSDVFMKTLTYTDRFRKFKNKE 74
Query: 162 AVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ + L + + E+ IAN+CPET EEA +++PSL+
Sbjct: 75 TISAVRNLLMQKKLHKFELAAIANLCPETTEEAKSLIPSLE 115
>gi|432927321|ref|XP_004080968.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Oryzias latipes]
Length = 144
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+N++ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 29 ENSETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETITAVR 86
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPE EEA A+ PSL+
Sbjct: 87 SLLLQKKLHKFELASLANLCPEAAEEAKALTPSLE 121
>gi|355712725|gb|AES04445.1| polymerase II polypeptide D [Mustela putorius furo]
Length = 117
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 110 AKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQS 169
A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 5 AETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSL 62
Query: 170 LSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EE+ A++PSL+
Sbjct: 63 LLQKKLHKFELACLANLCPETAEESKALIPSLE 95
>gi|357619360|gb|EHJ71970.1| putative histone acetyltransferase [Danaus plexippus]
Length = 138
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQ---AVK 164
+NA+ L+ E +LE + Q SA+ + F K L Y F N + AV+
Sbjct: 23 ENAETLLISEVDMLLEHRKAQNE--SAEEEQEFSEVFMKTLTYTNMFKKFKNKETITAVR 80
Query: 165 GLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L QS H E+ +AN+CPET EEA A++PSL+
Sbjct: 81 NLLQSKKLHKF---EVASLANLCPETPEEAKALIPSLE 115
>gi|348586101|ref|XP_003478808.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Cavia
porcellus]
Length = 142
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSGVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EE+ A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLE 119
>gi|242009106|ref|XP_002425333.1| transcriptional adaptor, putative [Pediculus humanus corporis]
gi|212509118|gb|EEB12595.1| transcriptional adaptor, putative [Pediculus humanus corporis]
Length = 602
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E +LE + Q SA+ ++ F K L Y F N + + +
Sbjct: 487 ENAETLIISEVHMLLEHRKAQNE--SAEEELEFSDVFMKTLTYTNRFRKFKNKETISSVR 544
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EEA A++PSL+
Sbjct: 545 NLLMQKKLHKFELAALANLCPETPEEAKALIPSLE 579
>gi|156383638|ref|XP_001632940.1| predicted protein [Nematostella vectensis]
gi|156220003|gb|EDO40877.1| predicted protein [Nematostella vectensis]
Length = 138
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 102 VEQELPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
E + PK +A+ L++ E +LE + Q SA+ ++ F K L Y + S +
Sbjct: 14 TELQFPKEFESAESLLNSEVYMLLEHRKTQNE--SAEEEQELSEVFMKTLGYTQKFSRYK 71
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
N + + + L + + E+ +AN+CPET EEA A++PSL+
Sbjct: 72 NRETIAQVRSLLGKKKLHKFELACLANLCPETAEEAKALIPSLE 115
>gi|310756790|gb|ADP20536.1| DNA-directed RNA polymerase II subunit RPB4 [Heterocephalus glaber]
gi|351703153|gb|EHB06072.1| DNA-directed RNA polymerase II subunit RPB4 [Heterocephalus glaber]
Length = 142
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSGVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EE+ A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLE 119
>gi|169849315|ref|XP_001831361.1| hypothetical protein CC1G_00908 [Coprinopsis cinerea okayama7#130]
gi|116507629|gb|EAU90524.1| hypothetical protein CC1G_00908 [Coprinopsis cinerea okayama7#130]
Length = 134
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E ++LE ++ + D + ++K L Y KT + F + + +
Sbjct: 27 NAGCLLISEVKYLLENREKD----APDTAV-----YNKTLDYVKTFAKFNTTDSASAVRE 77
Query: 169 SLS-EHGVTDGEICVIANICPETVEEAYAIVPSL 201
+L E +T E IAN+CP + EEA +I+PSL
Sbjct: 78 TLRREPALTQFETAQIANLCPASAEEAKSIIPSL 111
>gi|116488104|gb|ABJ98634.1| RNA polymerase II subunit D [Scophthalmus maximus]
Length = 129
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+N++ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 29 ENSETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETITAVR 86
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPE EEA A+ PSL+
Sbjct: 87 SLLLQKKLHKFELASMANLCPEAAEEAKALTPSLE 121
>gi|310756788|gb|ADP20535.1| DNA-directed RNA polymerase II subunit RPB4 [Fukomys anselli]
Length = 142
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSGVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EE+ A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLE 119
>gi|383851645|ref|XP_003701342.1| PREDICTED: transcriptional adapter 2-alpha-like isoform 2
[Megachile rotundata]
Length = 580
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E + +LE + Q SA+ + F K L Y F N + + +
Sbjct: 465 ENAETLLISEVSMLLEHRKAQNE--SAEEEQEFSEVFMKSLTYTNRFRRFKNKETIAAVR 522
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EEA A++PSL+
Sbjct: 523 NLLMQKKLHKFELASLANLCPETPEEAKALIPSLE 557
>gi|313219963|emb|CBY43664.1| unnamed protein product [Oikopleura dioica]
gi|313232607|emb|CBY19277.1| unnamed protein product [Oikopleura dioica]
Length = 137
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 138 IKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAI 197
+++ F K L Y K S F N + + L+ + EI +AN+CPET +EA A+
Sbjct: 50 VELSEVFQKTLDYCKRFSKFKNQDVIVNVRTMLTSKRLHRFEIAALANLCPETADEAKAL 109
Query: 198 VPSLK 202
+PS++
Sbjct: 110 IPSME 114
>gi|170583187|ref|XP_001896469.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Brugia malayi]
gi|158596317|gb|EDP34682.1| DNA-directed RNA polymerase II 16 kDa polypeptide, putative [Brugia
malayi]
Length = 138
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
F K L Y + + F N + ++ + L+ + E+ IAN+CPET EEA A++PSL+
Sbjct: 58 FVKTLNYTRRMARFKNRETIRAVRTLLATKPLHKFEVAQIANLCPETSEEAKALIPSLE 116
>gi|47216495|emb|CAG02146.1| unnamed protein product [Tetraodon nigroviridis]
Length = 145
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ENAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETITAVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVP 199
L + + E+ +AN+CPE EEA A++P
Sbjct: 85 SLLLQKKLHKFELASLANLCPEAAEEAKALIP 116
>gi|312080440|ref|XP_003142600.1| DNA-directed RNA polymerase II polypeptide [Loa loa]
gi|307762235|gb|EFO21469.1| DNA-directed RNA polymerase II polypeptide [Loa loa]
Length = 138
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
F K L Y + + F N + ++ + L+ + E+ IAN+CPET EEA A++PSL+
Sbjct: 58 FVKTLNYTRRMARFKNRETIRAVRTLLATKPLHKFEVAQIANLCPETSEEAKALIPSLE 116
>gi|389609397|dbj|BAM18310.1| histone acetyltransferase rpb4 [Papilio xuthus]
Length = 151
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQ---AVK 164
+NA+ L+ E +LE + Q SA+ + F K L Y F N + AV+
Sbjct: 23 ENAETLLISEVDMLLEHRKAQNE--SAEEEQEFSEVFMKTLTYTNMFKKFKNKETIAAVR 80
Query: 165 GLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L QS H E+ +AN+CPET EEA A++PSL+
Sbjct: 81 NLLQSKKLHKF---EVASLANLCPETPEEAKALIPSLE 115
>gi|449679512|ref|XP_004209350.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Hydra
magnipapillata]
Length = 143
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 102 VEQELPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
E + PK +A+ L++ E +LE + Q S D ++ F K L Y + S F
Sbjct: 19 TELQFPKEFESAETLLNSEVFMLLEHRKAQNE--SVDDEQEMSDVFMKTLNYTQRFSRFK 76
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
N + + + LS+ + E+ IAN+CPE EEA ++PSL+
Sbjct: 77 NRETIAQVRGLLSKKKLHKFELACIANLCPENAEEARTLIPSLE 120
>gi|197127797|gb|ACH44295.1| putative DNA directed RNA polymerase II polypeptide D [Taeniopygia
guttata]
Length = 142
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFRGRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EEA A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEEAKALIPSLE 119
>gi|332022936|gb|EGI63202.1| Transcriptional adapter 2-alpha [Acromyrmex echinatior]
Length = 567
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 100 LRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTN 159
LR+ Q +NA+ L+ E +LE + Q SA+ + F K L Y N
Sbjct: 444 LRLAQAQFENAETLLISEVYMLLEHRKAQNE--SAEEEQEFSEVFMKSLTYTNRFGKLKN 501
Query: 160 PQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ + + L + + EI +AN+CPET EEA A++PSL+
Sbjct: 502 KETIAAVRSLLMQKKLHKFEIASLANLCPETPEEAKALIPSLE 544
>gi|196007958|ref|XP_002113845.1| hypothetical protein TRIADDRAFT_26370 [Trichoplax adhaerens]
gi|190584249|gb|EDV24319.1| hypothetical protein TRIADDRAFT_26370 [Trichoplax adhaerens]
Length = 106
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSL 201
F K L + K S F N + + + L++H E+ +AN+CPET +EA +++PSL
Sbjct: 25 FQKTLSHTKRFSKFKNKETIAAVRSLLNKHNFHKFELASLANLCPETSDEAKSLMPSL 82
>gi|345315614|ref|XP_001517684.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Ornithorhynchus anatinus]
Length = 104
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 133 SADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVE 192
SA+ ++ F K L Y S F N + + + L + + E+ +AN+CPET E
Sbjct: 12 SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAE 71
Query: 193 EAYAIVPSLK 202
EA A++PSL+
Sbjct: 72 EAKALIPSLE 81
>gi|393221841|gb|EJD07325.1| hypothetical protein FOMMEDRAFT_164324 [Fomitiporia mediterranea
MF3/22]
Length = 135
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E ++LE D V ++K L Y K + FT + + +
Sbjct: 28 NAGCLLISEVKYLLEN---------RDKDAPDTVVYNKTLEYVKQFAKFTTTDSASAVRE 78
Query: 169 SLS-EHGVTDGEICVIANICPETVEEAYAIVPSL 201
+L E +T E IAN+CP EEA +I+PSL
Sbjct: 79 TLRREPLLTQFETAQIANLCPADAEEAKSIIPSL 112
>gi|307196407|gb|EFN77996.1| Transcriptional adapter 2-alpha [Harpegnathos saltator]
Length = 570
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 100 LRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTN 159
L++ Q +NA+ L+ E +LE + Q SA+ + F K L Y N
Sbjct: 447 LKLAQAQFENAETLLISEVYMLLEHRKAQNE--SAEEEQEFSEVFMKSLTYTNRFGKLKN 504
Query: 160 PQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ + + L++ + E+ +AN+CPET EEA A++PSL+
Sbjct: 505 KETITAVRNLLAQKKLHKFELASLANLCPETPEEAKALIPSLE 547
>gi|225716192|gb|ACO13942.1| DNA-directed RNA polymerase II subunit RPB4 [Esox lucius]
Length = 143
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L++ E +LE ++Q SA+ ++ F K L S F N + + +
Sbjct: 28 ENAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNCTARFSRFKNRETIGSVR 85
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPE EEA A++PSL+
Sbjct: 86 SLLLQKKLHKFELASLANLCPEAAEEAKALIPSLE 120
>gi|256084764|ref|XP_002578596.1| DNA-directed RNA polymerase II [Schistosoma mansoni]
gi|353232909|emb|CCD80264.1| putative dna-directed RNA polymerase II [Schistosoma mansoni]
Length = 140
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIK----IPVSFDKGLLYAKTHSHFTNPQAV 163
+NA LM E +LE +EQ + + TI PV F K L Y S F N + +
Sbjct: 23 ENADTLMLAEVKILLEHRKEQ----NENATIHELELSPV-FTKTLNYVTQFSKFNNRETI 77
Query: 164 KGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSL 201
+ + L++ + E+ +AN+ P+T EE+ A++PSL
Sbjct: 78 ESVRNLLTQKRFHNFELASLANLLPDTAEESKALLPSL 115
>gi|307179587|gb|EFN67883.1| DNA-directed RNA polymerase II 16 kDa polypeptide [Camponotus
floridanus]
Length = 124
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E +LE + Q SA+ + F K L Y N + + +
Sbjct: 9 ENAETLLISEVYMLLEHRKAQNE--SAEEEQEFSEVFMKSLTYTNRFGKLKNKETIAAVR 66
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + EI +AN+CPET EEA A++PSL+
Sbjct: 67 SLLMQKKLHKFEIASLANLCPETPEEAKALIPSLE 101
>gi|170086716|ref|XP_001874581.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164649781|gb|EDR14022.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 134
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E ++LE + + D + ++K L Y KT + F + + +
Sbjct: 27 NAGCLLISEVKYLLENRDKD----APDTAV-----YNKTLEYVKTFAKFNTTDSASAVRE 77
Query: 169 SLS-EHGVTDGEICVIANICPETVEEAYAIVPSL 201
+L E +T E IAN+CP EEA +++PSL
Sbjct: 78 TLRREPALTQFETAQIANLCPADAEEAKSVIPSL 111
>gi|195343319|ref|XP_002038245.1| GM10729 [Drosophila sechellia]
gi|194133266|gb|EDW54782.1| GM10729 [Drosophila sechellia]
Length = 146
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 106 LPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKG 165
PK++K L+ E +L+ + Q SAD + F K Y + F N + +
Sbjct: 9 FPKSSKALLISEVHMLLDHRKRQNE--SADEEQEFSEVFMKTYAYTDSFRKFKNKETIMS 66
Query: 166 LFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ + N+CPE EEA A++PSL+
Sbjct: 67 ARSFLMQKKLHKFELAALGNLCPEAPEEAKALIPSLE 103
>gi|242216811|ref|XP_002474210.1| predicted protein [Postia placenta Mad-698-R]
gi|220726628|gb|EED80571.1| predicted protein [Postia placenta Mad-698-R]
Length = 134
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E ++LE + + D + ++K L Y KT + F + + +
Sbjct: 27 NAGCLLISEVKYLLENRDKD----APDTAV-----YNKTLEYVKTFAKFNTTDSASAVRE 77
Query: 169 SLS-EHGVTDGEICVIANICPETVEEAYAIVPSL 201
+L E +T E IAN+CP EEA ++VPSL
Sbjct: 78 TLRREPALTQFETAQIANLCPVDAEEAKSVVPSL 111
>gi|443714916|gb|ELU07114.1| hypothetical protein CAPTEDRAFT_220021 [Capitella teleta]
Length = 139
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E +L+ +Q +A+ ++ F K L + + F N + + +
Sbjct: 24 ENAETLLISEVYMLLQHRAQQNE--NAEDEQELSEVFKKTLTHTERFKKFKNRETIASVR 81
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EEA A++PSL+
Sbjct: 82 SLLMQKKLHKFELAALANLCPETAEEAKALIPSLE 116
>gi|28076931|ref|NP_081377.1| DNA-directed RNA polymerase II subunit RPB4 isoform 2 [Mus
musculus]
gi|338715739|ref|XP_001499044.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Equus
caballus]
gi|13435942|gb|AAH04810.1| Polymerase (RNA) II (DNA directed) polypeptide D [Mus musculus]
gi|344254896|gb|EGW11000.1| DNA-directed RNA polymerase II subunit RPB4 [Cricetulus griseus]
gi|432115789|gb|ELK36944.1| DNA-directed RNA polymerase II subunit RPB4 [Myotis davidii]
Length = 104
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 133 SADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVE 192
SA+ ++ F K L Y S F N + + + L + + E+ +AN+CPET E
Sbjct: 12 SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAE 71
Query: 193 EAYAIVPSLK 202
E+ A++PSL+
Sbjct: 72 ESKALIPSLE 81
>gi|328772120|gb|EGF82159.1| hypothetical protein BATDEDRAFT_86911 [Batrachochytrium
dendrobatidis JAM81]
Length = 138
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
++ +CL+ E +LE +++ S D +I + K + Y + S FTN Q VK +
Sbjct: 25 QDVQCLLISEVRVLLEVAKDRKRKESGDGSISDIMQ--KTIDYCQQFSRFTNKQTVKEIR 82
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSL 201
+ E+ +AN+C ET EEA ++PSL
Sbjct: 83 NLFPDDQFHQFEMAQLANLCCETAEEAKVLIPSL 116
>gi|321476639|gb|EFX87599.1| hypothetical protein DAPPUDRAFT_306425 [Daphnia pulex]
Length = 137
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E +L+ + Q SA+ ++ F K L Y + S F N + + +
Sbjct: 22 ENAETLLISEVHMLLDHRKLQNE--SAEDEQELSEVFMKTLNYTQRFSKFKNRETIAAIR 79
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPE+ EEA +++PSL+
Sbjct: 80 SLLMQKKLHKFELAALANLCPESPEEAKSLIPSLE 114
>gi|336368399|gb|EGN96742.1| hypothetical protein SERLA73DRAFT_140488 [Serpula lacrymans var.
lacrymans S7.3]
Length = 134
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E ++LE + + D + ++K L Y KT + F + + +
Sbjct: 27 NAGCLLISEVKYLLENRDKD----APDTAV-----YNKTLEYVKTFTKFNTTDSASAVRE 77
Query: 169 SLS-EHGVTDGEICVIANICPETVEEAYAIVPSL 201
+L E +T E IAN+CP EEA +++PSL
Sbjct: 78 TLRREPALTQFETAQIANLCPGDAEEAKSVIPSL 111
>gi|72150941|ref|XP_795859.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Strongylocentrotus purpuratus]
Length = 142
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 144 FDKGLLYAKTHSHFTNPQA---VKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPS 200
F K L Y S F N + V+GL Q + + E+ ++AN+CPET EEA A++PS
Sbjct: 59 FMKTLNYTGRFSRFKNRETIGDVRGLLQQ-QQPKLHKFELALLANLCPETAEEAKALIPS 117
Query: 201 LK 202
L+
Sbjct: 118 LE 119
>gi|390370008|ref|XP_003731750.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like,
partial [Strongylocentrotus purpuratus]
Length = 95
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 144 FDKGLLYAKTHSHFTNPQA---VKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPS 200
F K L Y S F N + V+GL Q + + E+ ++AN+CPET EEA A++PS
Sbjct: 12 FMKTLNYTGRFSRFKNRETIGDVRGLLQQ-QQPKLHKFELALLANLCPETAEEAKALIPS 70
Query: 201 LK 202
L+
Sbjct: 71 LE 72
>gi|322792882|gb|EFZ16715.1| hypothetical protein SINV_12361 [Solenopsis invicta]
Length = 589
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E +LE + Q SA+ + F K L Y N + + +
Sbjct: 474 ENAETLLISEVYMLLEHRKAQNE--SAEEEQEFSEVFMKSLTYTNRFGKLKNKETISAVR 531
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + EI +AN+CPET EEA A++PSL+
Sbjct: 532 SLLMQKKLHKFEIASLANLCPETPEEAKALIPSLE 566
>gi|226372134|gb|ACO51692.1| DNA-directed RNA polymerase II subunit RPB4 [Rana catesbeiana]
Length = 142
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
++A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ESAETLLNPEVHMLLEHRKQQNE--SAEEEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CP T +EA A++PSL+
Sbjct: 85 SLLLQKKLHRFELACLANLCPGTADEAKALIPSLE 119
>gi|403411898|emb|CCL98598.1| predicted protein [Fibroporia radiculosa]
Length = 153
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E ++LE + + D + ++K L Y KT + F + + +
Sbjct: 28 NAGCLLISEVKYLLENRDKD----APDTAV-----YNKTLEYVKTFAKFNTTDSASAVRE 78
Query: 169 SLS-EHGVTDGEICVIANICPETVEEAYAIVPSLKV 203
+L E +T E IAN+CP EEA ++VP V
Sbjct: 79 TLRREPALTQFETAQIANLCPANAEEAKSVVPRYMV 114
>gi|391330614|ref|XP_003739752.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Metaseiulus occidentalis]
Length = 144
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 87 AKVSVVKEALPLELRVEQELPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVS 143
A +VV EA+ E E PK NA+ L+ E +LE +Q SA+ ++
Sbjct: 6 ASAAVVLEAVE-EDACELSFPKDFENAETLLISEVHMLLEHRSKQNE--SAEEEQELSEF 62
Query: 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
F K Y S F N + + + L + + E+ +AN+CPET EEA A++PSL+
Sbjct: 63 FTKTHGYCTRFSKFKNRETIGEVRNLLQQKKLHKFELAQLANLCPETPEEAKALIPSLE 121
>gi|195152017|ref|XP_002016935.1| GL22027 [Drosophila persimilis]
gi|194111992|gb|EDW34035.1| GL22027 [Drosophila persimilis]
Length = 629
Score = 44.3 bits (103), Expect = 0.033, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 98 LELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHF 157
+++ V + +NA+ L+ E +L+ + Q SAD + F K Y + F
Sbjct: 504 IKIDVNKTQFENAETLLISEVHMLLDHRKRQNE--SADEEQEFSEVFMKTYAYTDSFRKF 561
Query: 158 TNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
N + + + L + + E+ + N+CPE EEA A++PSL+
Sbjct: 562 KNKETIMSVRSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLE 606
>gi|194764549|ref|XP_001964391.1| GF23150 [Drosophila ananassae]
gi|190614663|gb|EDV30187.1| GF23150 [Drosophila ananassae]
Length = 624
Score = 44.3 bits (103), Expect = 0.033, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 98 LELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHF 157
+++ V + +NA+ L+ E +L+ + Q SAD + F K Y + F
Sbjct: 499 IKIDVNKTQFENAETLLISEVHMLLDHRKRQNE--SADEEQEFSEVFMKTYAYTDSFRKF 556
Query: 158 TNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
N + + + L + + E+ + N+CPE EEA A++PSL+
Sbjct: 557 KNKETIMSVRSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLE 601
>gi|390178627|ref|XP_003736694.1| GA30251 [Drosophila pseudoobscura pseudoobscura]
gi|388859523|gb|EIM52767.1| GA30251 [Drosophila pseudoobscura pseudoobscura]
Length = 139
Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E +L+ + Q SAD + F K Y + F N + + +
Sbjct: 24 ENAETLLISEVHMLLDHRKRQNE--SADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSVR 81
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ + N+CPE EEA A++PSL+
Sbjct: 82 SLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLE 116
>gi|387018222|gb|AFJ51229.1| DNA-directed RNA polymerase II subunit RPB4-like [Crotalus
adamanteus]
Length = 142
Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q S + ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SVEDEQELSELFMKTLNYTGRFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+ PET EEA A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLGPETAEEAKALIPSLE 119
>gi|195569945|ref|XP_002102969.1| GD20190 [Drosophila simulans]
gi|194198896|gb|EDX12472.1| GD20190 [Drosophila simulans]
Length = 782
Score = 43.1 bits (100), Expect = 0.063, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 98 LELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHF 157
+++ V + +NA+ L+ E +L+ + Q SAD + F K Y + F
Sbjct: 657 IKIDVNKTQFENAETLLISEVHMLLDHRKRQNE--SADEEQEFSEVFMKTYAYTDSFRKF 714
Query: 158 TNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
N + + L + + E+ + N+CPE EEA A++PSL+
Sbjct: 715 KNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLE 759
>gi|27263229|gb|AAN88031.1| RNA polymerase II accessory factor rpb4 [Drosophila melanogaster]
gi|27263231|gb|AAN88032.1| RNA polymerase II accessory factor rpb4 [Drosophila melanogaster]
Length = 139
Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E +L+ + Q SAD + F K Y + F N + +
Sbjct: 24 ENAETLLISEVHMLLDHRKRQNE--SADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSAR 81
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ + N+CPE EEA A++PSL+
Sbjct: 82 SLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLE 116
>gi|326434249|gb|EGD79819.1| hypothetical protein PTSG_10802 [Salpingoeca sp. ATCC 50818]
Length = 153
Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 86 GAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFD 145
AK SVV++A LE + E L+ E ILE ++ L DP + F
Sbjct: 9 DAKKSVVEDANSLEFFEDFEQVSTVPLLL-SEVEKILEARKDLQ--LREDPDAAMSAEFT 65
Query: 146 KGLLYAKTHSH---FTNPQAVKGLFQSLS------EHGVTDGEICVIANICPETVEEAYA 196
K L YA+ H + +A++ + + L E + E + N+ PETVEEA A
Sbjct: 66 KTLDYAQRFGHSRSYEADEALRSIMEELRTQTPDMEKRLHKFEEVQLINLAPETVEEAKA 125
Query: 197 IVPSL 201
++P+L
Sbjct: 126 LIPTL 130
>gi|225713530|gb|ACO12611.1| DNA-directed RNA polymerase II subunit RPB4 [Lepeophtheirus
salmonis]
gi|290462181|gb|ADD24138.1| DNA-directed RNA polymerase II subunit RPB4 [Lepeophtheirus
salmonis]
gi|290562964|gb|ADD38876.1| DNA-directed RNA polymerase II subunit RPB4 [Lepeophtheirus
salmonis]
Length = 139
Score = 42.7 bits (99), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 91 VVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLY 150
+ ++A L+ E E P+ K L+ E +LE Q+Q +A+ + F K L Y
Sbjct: 8 IEEDASDLQFPTEFEDPE-TKTLLISEVHILLEHRQKQND--AAEEEQEFSEVFMKTLNY 64
Query: 151 AKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ + F N + + L++ + E+ +AN+CP++ EEA +++PSL+
Sbjct: 65 TQRFAKFRNLDNIASIRSVLTQKKLHKFELAALANLCPDSPEEARSLIPSLE 116
>gi|281362019|ref|NP_001014633.2| Rpb4 [Drosophila melanogaster]
gi|143459115|sp|Q9VEA5.5|RPB4_DROME RecName: Full=DNA-directed RNA polymerase II 16 kDa polypeptide;
AltName: Full=RNA polymerase II accessory factor rpb4
gi|66571194|gb|AAY51562.1| IP01323p [Drosophila melanogaster]
gi|66772825|gb|AAY55724.1| IP02337p [Drosophila melanogaster]
gi|66772827|gb|AAY55725.1| IP02340p [Drosophila melanogaster]
gi|220943406|gb|ACL84246.1| Rpb4-PF [synthetic construct]
gi|220955702|gb|ACL90394.1| Rpb4-PF [synthetic construct]
gi|272477037|gb|AAF55522.5| Rpb4 [Drosophila melanogaster]
Length = 139
Score = 42.7 bits (99), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E +L+ + Q SAD + F K Y + F N + +
Sbjct: 24 ENAETLLISEVHMLLDHRKRQNE--SADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSAR 81
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ + N+CPE EEA A++PSL+
Sbjct: 82 SLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLE 116
>gi|336381198|gb|EGO22350.1| hypothetical protein SERLADRAFT_339075 [Serpula lacrymans var.
lacrymans S7.9]
Length = 116
Score = 42.7 bits (99), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E ++LE + + D + ++K L Y KT + F + + +
Sbjct: 33 NAGCLLISEVKYLLENRDKD----APDTAV-----YNKTLEYVKTFTKFNTTDSASAVRE 83
Query: 169 SLS-EHGVTDGEICVIANICPETVEEAYAIVP 199
+L E +T E IAN+CP EEA +++P
Sbjct: 84 TLRREPALTQFETAQIANLCPGDAEEAKSVIP 115
>gi|409040527|gb|EKM50014.1| hypothetical protein PHACADRAFT_105721 [Phanerochaete carnosa
HHB-10118-sp]
Length = 126
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E ++LE ++ P + ++K L Y KT F A + +
Sbjct: 35 NAGCLLISEVKYLLENRDKE------PPDTAV---YNKTLEYVKTFGKFNTTDAASAVRE 85
Query: 169 SLS-EHGVTDGEICVIANICPETVEEAYAIVP 199
+L E +T E IAN+CP EE+ +I+P
Sbjct: 86 TLRREPALTQFETAQIANLCPADSEESKSIIP 117
>gi|195348909|ref|XP_002040989.1| GM15313 [Drosophila sechellia]
gi|194122594|gb|EDW44637.1| GM15313 [Drosophila sechellia]
Length = 137
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E +L+ + Q SAD + F K Y + F N + +
Sbjct: 22 ENAETLLISEVHMLLDHRKRQNE--SADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSAR 79
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ + N+CPE EEA A++PSL+
Sbjct: 80 SLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLE 114
>gi|353242845|emb|CCA74453.1| hypothetical protein PIIN_08406 [Piriformospora indica DSM 11827]
Length = 135
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E +L+ + P + PV F+K + Y S F+ + +
Sbjct: 27 NAGCLLISEVKILLKEKE-------GKPGVDSPV-FNKTVEYVNMFSKFSTEDTIGLVRA 78
Query: 169 SLSEHG-VTDGEICVIANICPETVEEAYAIVPSLKVW 204
+L +T E +AN+CP T EEA +I+PSL +
Sbjct: 79 TLRRQANLTQFETAQLANLCPSTAEEAKSIIPSLAKY 115
>gi|194900250|ref|XP_001979670.1| GG16596 [Drosophila erecta]
gi|195036818|ref|XP_001989865.1| GH19030 [Drosophila grimshawi]
gi|195110591|ref|XP_001999863.1| GI22842 [Drosophila mojavensis]
gi|195392503|ref|XP_002054897.1| GJ24701 [Drosophila virilis]
gi|195497583|ref|XP_002096162.1| GE25223 [Drosophila yakuba]
gi|190651373|gb|EDV48628.1| GG16596 [Drosophila erecta]
gi|193894061|gb|EDV92927.1| GH19030 [Drosophila grimshawi]
gi|193916457|gb|EDW15324.1| GI22842 [Drosophila mojavensis]
gi|194152983|gb|EDW68417.1| GJ24701 [Drosophila virilis]
gi|194182263|gb|EDW95874.1| GE25223 [Drosophila yakuba]
Length = 104
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 133 SADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVE 192
SAD + F K Y + F N + + + L + + E+ + N+CPE E
Sbjct: 12 SADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSVRSLLMQKKLHKFELAALGNLCPEAPE 71
Query: 193 EAYAIVPSLK 202
EA A++PSL+
Sbjct: 72 EAKALIPSLE 81
>gi|393233961|gb|EJD41528.1| hypothetical protein AURDEDRAFT_115438 [Auricularia delicata
TFB-10046 SS5]
Length = 135
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Query: 109 NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQ 168
NA CL+ E +L+ ++ + D + ++K L Y KT + F+ ++ + +
Sbjct: 28 NAGCLLISEVKLLLDHRRDN----APDTAV-----YNKTLEYVKTFAKFSTAESASAVRE 78
Query: 169 SLS-EHGVTDGEICVIANICPETVEEAYAIVPSL 201
+L E +T E +AN+ P V+EA +IVPSL
Sbjct: 79 TLRREPQLTQFETAQLANLVPADVDEAKSIVPSL 112
>gi|358055256|dbj|GAA98764.1| hypothetical protein E5Q_05452 [Mixia osmundae IAM 14324]
Length = 477
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
+L++ +E K A CLM E +++ E +S +P ++ V+ K Y + S
Sbjct: 20 QLKLGKEFEK-ASCLMINEVKMLIDNQGEDAKRVSREPG-QLNVT-KKMWEYVERFSPGL 76
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
P + L +L + D E C +AN+ P+TVEEA AI+PS++
Sbjct: 77 EPSDIARLRSALLRESLADFEACSLANLRPKTVEEAKAILPSIQ 120
>gi|240849411|ref|NP_001155406.1| histone acetyltransferase-like [Acyrthosiphon pisum]
gi|328700946|ref|XP_003241435.1| PREDICTED: DNA-directed RNA polymerase II 16 kDa polypeptide-like
[Acyrthosiphon pisum]
gi|239793466|dbj|BAH72847.1| ACYPI000946 [Acyrthosiphon pisum]
Length = 138
Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 105 ELPK---NAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQ 161
+ PK NA+ L+ E +L+ + Q SA+ + F+K L Y + S F N +
Sbjct: 17 QFPKEFENAETLLISEVNMLLKFRKNQNE--SAEEEQEFSEVFNKTLTYTEQCSKFKNKE 74
Query: 162 AVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
+ + L+ + E+ I N+CP+ +EA +++PSL+
Sbjct: 75 TIVAVRNLLAGKKLHKFELASIGNLCPQLADEAKSLIPSLE 115
>gi|452987725|gb|EME87480.1| hypothetical protein MYCFIDRAFT_27879 [Pseudocercospora fijiensis
CIRAD86]
Length = 152
Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 150 YAKTHSHFTNPQAVKGLFQSLSEH-----GVTDGEICVIANICPETVEEAYAIVPSLK 202
Y KT S F + QA+ + Q S G+ + E C +A +C ++VEEA ++PSL+
Sbjct: 73 YCKTFSRFRDNQAITQVNQITSNLTARGLGIVEFERCQLATLCCDSVEEARTLIPSLE 130
>gi|302845327|ref|XP_002954202.1| hypothetical protein VOLCADRAFT_106291 [Volvox carteri f.
nagariensis]
gi|300260407|gb|EFJ44626.1| hypothetical protein VOLCADRAFT_106291 [Volvox carteri f.
nagariensis]
Length = 140
Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
++A + + E A IL Q P+ + K L Y + + TNP+AV+ +
Sbjct: 17 EHAAVISNSEVATILSEYMRQRR--EEKPSFQPQPLVQKTLEYVQKFNCGTNPEAVQAMR 74
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSL 201
+ G+ E +IAN+ PE +EA ++PSL
Sbjct: 75 NYMENFGLKPFEWGLIANLMPEDTDEANKLIPSL 108
>gi|392512812|emb|CAD26382.2| DNA-DIRECTED RNA POLYMERASE II 16KDA POLYPEPTIDE [Encephalitozoon
cuniculi GB-M1]
Length = 120
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
K++ +M EA ++LEG +E+ AD F L Y + + L
Sbjct: 11 KDSHPIMLAEARYLLEGQKER---FRADFRSNASKVFRSTLGYLDDFCRIKDKSVAEDLR 67
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSL 201
+LS G + EI + ++ P++VEEA ++VPSL
Sbjct: 68 TTLSGLGFGEVEIALFGSLFPQSVEEAKSLVPSL 101
>gi|390371162|dbj|GAB65043.1| DNA-directed RNA polymerase II 16 kDa subunit [Plasmodium cynomolgi
strain B]
Length = 132
Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLS---ADPTIKIPVSFDKGLLYAKTHSHFTNPQAVK 164
KN KCL CE IL +Q+ L S + I SFD YA + N ++
Sbjct: 19 KNCKCLNLCELQLIL---GDQLRLTSKRNEEAQTLIKSSFD----YANKFATIKNRSSIV 71
Query: 165 GLFQSLSEHG-VTDGEICVIANICPETVEEAYAIVPSL 201
+ +L G + + EI ++ N+ P+TV+EA +PSL
Sbjct: 72 DVRTNLERIGELHEYEIAMLVNLLPKTVQEARYFIPSL 109
>gi|340376921|ref|XP_003386979.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Amphimedon queenslandica]
Length = 139
Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 110 AKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQS 169
A L+ E +LE + Q S D + F K L Y +T S + + + + + +
Sbjct: 26 ADALLVSEVKMLLEHRKAQHE--SQDDDQDLSEVFTKTLDYCQTFSKYNSRETISAIRGA 83
Query: 170 LSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L +H + E+ +AN+ P +EA ++PSL+
Sbjct: 84 LQKHKLHKFEVACLANLAPADADEAKTLLPSLQ 116
>gi|345310581|ref|XP_001518993.2| PREDICTED: mitochondrial import receptor subunit TOM70-like
[Ornithorhynchus anatinus]
Length = 626
Score = 39.3 bits (90), Expect = 0.88, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 94 EALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKT 153
+AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 206 KALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKDKYKNR 265
Query: 154 HSHFTNPQAVKGLFQSLSE 172
+PQ +K F S ++
Sbjct: 266 EPLMPSPQFIKSYFSSFTD 284
>gi|402586662|gb|EJW80599.1| RNA polymerase II subunit protein 4, partial [Wuchereria bancrofti]
Length = 129
Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 99 ELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFT 158
EL+ +E + A L+ E +LE ++Q + ++ F K L Y + + F
Sbjct: 31 ELKFPKEF-EQADTLLTSEVYLLLEHRRQQSE--QKEEIDEMSDVFVKTLNYTRRMARFK 87
Query: 159 NPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEA 194
N + ++ + L+ + E+ IAN+CPET EEA
Sbjct: 88 NRETIRAVRTLLATKPLHKFEVAQIANLCPETSEEA 123
>gi|156093884|ref|XP_001612980.1| DNA-directed RNA polymerase II 16 kDa subunit [Plasmodium vivax
Sal-1]
gi|148801854|gb|EDL43253.1| DNA-directed RNA polymerase II 16 kDa subunit, putative [Plasmodium
vivax]
Length = 132
Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLS---ADPTIKIPVSFDKGLLYAKTHSHFTNPQAVK 164
KN KCL CE IL +Q+ L S + I SFD YA + N ++
Sbjct: 19 KNCKCLNLCELQLIL---GDQLRLTSKRNEEAQALIKSSFD----YANKFATIKNRSSIV 71
Query: 165 GLFQSLSEHG-VTDGEICVIANICPETVEEAYAIVPSL 201
+ +L G + + EI ++ N+ P+TV+EA +PSL
Sbjct: 72 DVRTNLERIGELHEYEIAMLVNLLPKTVQEARYFIPSL 109
>gi|334349213|ref|XP_001369289.2| PREDICTED: hypothetical protein LOC100015134 [Monodelphis
domestica]
Length = 186
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 157 FTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSL 201
F N + + + L + + E+ +AN+CPET EEA A++PSL
Sbjct: 118 FQNRETIASVRGLLLQKKLHKFELAALANLCPETAEEAKALIPSL 162
>gi|301104431|ref|XP_002901300.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262100775|gb|EEY58827.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 538
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 139 KIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANIC-PETVEEAYAI 197
++P S + ++ H T+ + V + + L EHG + I +++ I PE VE+ YA+
Sbjct: 421 RLPSSLNYHNVFIMDHV-VTSAEVVIAVVRRLQEHGAVEAMISLVSLITTPEAVEKIYAV 479
Query: 198 VPSLKV 203
P+LK+
Sbjct: 480 FPALKI 485
>gi|195450000|ref|XP_002072320.1| GK22783 [Drosophila willistoni]
gi|194168405|gb|EDW83306.1| GK22783 [Drosophila willistoni]
Length = 116
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
++A+ L+ E +L+ + Q SAD + F K Y + F N + + L
Sbjct: 5 ESAETLLISEVHMLLDHRKRQNE--SADEEQEFSEVFMKTYAYTDSFRKFKNKETIILLM 62
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
Q + E+ + N+CPE EEA A++PSL+
Sbjct: 63 QK----KLHKFELAALGNLCPEAPEEAKALIPSLE 93
>gi|83314554|ref|XP_730410.1| RNA polymerase Rpb4 [Plasmodium yoelii yoelii 17XNL]
gi|23490125|gb|EAA21975.1| RNA polymerase Rpb4 [Plasmodium yoelii yoelii]
Length = 152
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLS---ADPTIKIPVSFDKGLLYAKTHSHFTNPQAVK 164
+N KCL CE IL +Q+ L S D I SFD YA + N ++
Sbjct: 20 QNCKCLNLCELQLIL---GDQLRLTSKRNEDAQALIRSSFD----YANRFATIKNRSSIV 72
Query: 165 GLFQSLSEHG-VTDGEICVIANICPETVEEAYAIVPSL 201
+ +L G + + EI ++ N+ P+T+ EA +PSL
Sbjct: 73 DIRTNLERIGELYEYEIAMLVNLLPKTILEARYFIPSL 110
>gi|291545061|emb|CBL18170.1| yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF
N-terminal region [Ruminococcus champanellensis 18P13]
Length = 509
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 25/112 (22%)
Query: 52 EGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAK 111
+G T + +G F + G G++KGG GD +A G S+V + +P P NA
Sbjct: 414 KGAGTIVATPEGAFVNSTGNSGMSKGGSGDVLA-GMLASLVAQGIP---------PTNAA 463
Query: 112 CLM--------DCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHS 155
C+ DC A H+ E A+L D ++P F K L + HS
Sbjct: 464 CMAVFLHGKAGDCAAEHLSE-----QAMLPTDLIGELPGLFLK--LEQRRHS 508
>gi|401827328|ref|XP_003887756.1| RNA polymerase II subunit Rpb4 [Encephalitozoon hellem ATCC 50504]
gi|392998763|gb|AFM98775.1| RNA polymerase II subunit Rpb4 [Encephalitozoon hellem ATCC 50504]
Length = 121
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 117 EAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVT 176
EA ++LEG +E+ AD F L Y + + L +LS G +
Sbjct: 20 EARYLLEGQKER---FRADFRSNASKIFRSTLGYLDEFCRIKDKSVAEDLRTTLSALGFS 76
Query: 177 DGEICVIANICPETVEEAYAIVPSLK 202
+ EI + ++ P++VEEA ++VPSL+
Sbjct: 77 ELEIALFGSLFPQSVEEAKSLVPSLE 102
>gi|40788338|dbj|BAA34439.2| KIAA0719 protein [Homo sapiens]
Length = 624
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 94 EALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKT 153
+AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 204 KALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNR 263
Query: 154 HSHFTNPQAVKGLFQSLSE 172
+PQ +K F S ++
Sbjct: 264 EPLMPSPQFIKSYFSSFTD 282
>gi|432115603|gb|ELK36875.1| Mitochondrial import receptor subunit TOM70 [Myotis davidii]
Length = 649
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 94 EALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKT 153
+AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 229 KALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNR 288
Query: 154 HSHFTNPQAVKGLFQSLSE 172
+PQ +K F S ++
Sbjct: 289 EPLMPSPQFIKSYFSSFTD 307
>gi|291400784|ref|XP_002716658.1| PREDICTED: translocase of outer mitochondrial membrane 70 homolog
A, partial [Oryctolagus cuniculus]
Length = 623
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 94 EALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKT 153
+AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 203 KALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNR 262
Query: 154 HSHFTNPQAVKGLFQSLSE 172
+PQ +K F S ++
Sbjct: 263 EPLMPSPQFIKSYFSSFTD 281
>gi|19173403|ref|NP_597206.1| DNA-DIRECTED RNA POLYMERASE II 16KDA POLYPEPTIDE [Encephalitozoon
cuniculi GB-M1]
gi|449328913|gb|AGE95189.1| DNA-directed RNA polymerase II 16kDa polypeptide [Encephalitozoon
cuniculi]
Length = 104
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 114 MDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEH 173
M EA ++LEG +E+ AD F L Y + + L +LS
Sbjct: 1 MLAEARYLLEGQKER---FRADFRSNASKVFRSTLGYLDDFCRIKDKSVAEDLRTTLSGL 57
Query: 174 GVTDGEICVIANICPETVEEAYAIVPSL 201
G + EI + ++ P++VEEA ++VPSL
Sbjct: 58 GFGEVEIALFGSLFPQSVEEAKSLVPSL 85
>gi|301763419|ref|XP_002917136.1| PREDICTED: mitochondrial import receptor subunit TOM70-like
[Ailuropoda melanoleuca]
Length = 725
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 94 EALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKT 153
+AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 305 KALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNR 364
Query: 154 HSHFTNPQAVKGLFQSLSE 172
+PQ +K F S ++
Sbjct: 365 EPLMPSPQFIKSYFSSFTD 383
>gi|302687374|ref|XP_003033367.1| hypothetical protein SCHCODRAFT_54491 [Schizophyllum commune H4-8]
gi|300107061|gb|EFI98464.1| hypothetical protein SCHCODRAFT_54491 [Schizophyllum commune H4-8]
Length = 135
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 112 CLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLS 171
CL+ E ++LE +E+ A +A + K L Y KT + + + + + L
Sbjct: 30 CLLISEVKYLLEN-REKTAPDNA--------VYAKTLDYVKTFAKWHTTDSASAVREILR 80
Query: 172 -EHGVTDGEICVIANICPETVEEAYAIVPSLK 202
E +T E +AN+CP EEA +I+PSL+
Sbjct: 81 REPQLTQFETAQLANLCPAEAEEAKSIIPSLE 112
>gi|70923994|ref|XP_734917.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|70926439|ref|XP_735759.1| DNA-directed RNA polymerase II 16 kDa subunit [Plasmodium chabaudi
chabaudi]
gi|56508101|emb|CAH76309.1| hypothetical protein PC000412.01.0 [Plasmodium chabaudi chabaudi]
gi|56509703|emb|CAH86732.1| DNA-directed RNA polymerase II 16 kDa subunit, putative [Plasmodium
chabaudi chabaudi]
Length = 133
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLS---ADPTIKIPVSFDKGLLYAKTHSHFTNPQAVK 164
+N KCL CE IL +Q+ L S D I SFD YA + N ++
Sbjct: 20 QNCKCLNLCELQLIL---GDQLRLTSKRNEDAQALIRSSFD----YANRFATIKNRSSIV 72
Query: 165 GLFQSLSEHG-VTDGEICVIANICPETVEEAYAIVPSL 201
+ +L G + + EI ++ N+ P+T+ EA +PSL
Sbjct: 73 DIRTNLERIGELYEYEIAMLVNLLPKTILEARYFIPSL 110
>gi|28972369|dbj|BAC65638.1| mKIAA0719 protein [Mus musculus]
Length = 626
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 37/79 (46%)
Query: 94 EALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKT 153
+AL + ++L +CL D A ILEG Q + ++L AD +K+ + Y
Sbjct: 206 KALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNEQSMLLADKVLKLLGKENAKEKYKNR 265
Query: 154 HSHFTNPQAVKGLFQSLSE 172
+PQ +K F S ++
Sbjct: 266 EPLMPSPQFIKSYFSSFTD 284
>gi|449020090|dbj|BAM83492.1| RNA polymerase II subunit [Cyanidioschyzon merolae strain 10D]
Length = 136
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 109 NAKC--LMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGL 166
N C L+ CE A +L +++ A L A+ + F K Y + + F + + K +
Sbjct: 23 NEHCQPLLICEVAELL---RQKRAELPAELQSSLGPIFVKSEAYVERFNQFRSAEVAKVV 79
Query: 167 FQSLSEHG-VTDGEICVIANICPETVEEAYAIVPSLK 202
L H + E +AN+ PET EA AI+PSLK
Sbjct: 80 RVRLERHPELHPFERAQLANLLPETPAEAKAIIPSLK 116
>gi|126325626|ref|XP_001363876.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Monodelphis
domestica]
Length = 612
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 193 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 252
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 253 PLMPSPQFIKSYFSSFTDDIIS 274
>gi|70950532|ref|XP_744582.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56524593|emb|CAH80182.1| hypothetical protein PC000766.03.0 [Plasmodium chabaudi chabaudi]
Length = 116
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLS---ADPTIKIPVSFDKGLLYAKTHSHFTNPQAVK 164
+N KCL CE IL +Q+ L S D I SFD YA + N ++
Sbjct: 3 QNCKCLNLCELQLIL---GDQLRLTSKRNEDAQALIRSSFD----YANRFATIKNRSSIV 55
Query: 165 GLFQSLSEHG-VTDGEICVIANICPETVEEAYAIVPSL 201
+ +L G + + EI ++ N+ P+T+ EA +PSL
Sbjct: 56 DIRTNLERIGELYEYEIAMLVNLLPKTILEARYFIPSL 93
>gi|68061507|ref|XP_672753.1| DNA-directed RNA polymerase II 16 kDa subunit [Plasmodium berghei
strain ANKA]
gi|68069061|ref|XP_676441.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56490075|emb|CAI01817.1| DNA-directed RNA polymerase II 16 kDa subunit, putative [Plasmodium
berghei]
gi|56496141|emb|CAI00460.1| hypothetical protein PB000968.03.0 [Plasmodium berghei]
Length = 133
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLS---ADPTIKIPVSFDKGLLYAKTHSHFTNPQAVK 164
+N KCL CE IL +Q+ L S D I SFD YA + N ++
Sbjct: 20 QNCKCLNLCELQLIL---GDQLRLTSKRNEDAQALIRSSFD----YANRFATIKNRSSIV 72
Query: 165 GLFQSLSEHG-VTDGEICVIANICPETVEEAYAIVPSL 201
+ +L G + + EI ++ N+ P+T+ EA +PSL
Sbjct: 73 DIRTNLERIGELYEYEIAMLVNLLPKTILEARYFIPSL 110
>gi|338716112|ref|XP_001917360.2| PREDICTED: LOW QUALITY PROTEIN: mitochondrial import receptor
subunit TOM70-like [Equus caballus]
Length = 662
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 243 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 302
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 303 PLMPSPQFIKSYFSSFTDDIIS 324
>gi|281354728|gb|EFB30312.1| hypothetical protein PANDA_005313 [Ailuropoda melanoleuca]
Length = 573
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 154 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 213
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 214 PLMPSPQFIKSYFSSFTDDIIS 235
>gi|221053207|ref|XP_002257978.1| DNA-directed RNA polymerase I subunit [Plasmodium knowlesi strain
H]
gi|193807810|emb|CAQ38515.1| DNA-directed RNA polymerase I subunit, putative [Plasmodium
knowlesi strain H]
Length = 132
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLS---ADPTIKIPVSFDKGLLYAKTHSHFTNPQAVK 164
KN KCL CE IL +Q+ L S + I SFD YA + N ++
Sbjct: 19 KNCKCLNLCELQLIL---GDQLRLTSKRNEEAQTLIKSSFD----YANKFATIKNRSSIV 71
Query: 165 GLFQSLSEHG-VTDGEICVIANICPETVEEAYAIVPSL 201
+ +L G + + EI ++ N+ P+T +EA +PSL
Sbjct: 72 DVRTNLERIGELHEYEIAMLVNLLPKTAQEARYFIPSL 109
>gi|426217373|ref|XP_004002928.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Ovis aries]
Length = 609
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 190 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 249
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 250 PLMPSPQFIKSYFSSFTDDIIS 271
>gi|115496634|ref|NP_001068796.1| mitochondrial import receptor subunit TOM70 [Bos taurus]
gi|115305042|gb|AAI23445.1| Translocase of outer mitochondrial membrane 70 homolog A (S.
cerevisiae) [Bos taurus]
gi|296491553|tpg|DAA33596.1| TPA: translocase of outer mitochondrial membrane 70 homolog A [Bos
taurus]
gi|300675571|gb|ADK26451.1| translocase of outer mitochondrial membrane 70 [Bos taurus]
Length = 609
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 190 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 249
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 250 PLMPSPQFIKSYFSSFTDDIIS 271
>gi|387019333|gb|AFJ51784.1| Mitochondrial import receptor subunit TOM70 [Crotalus adamanteus]
Length = 588
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 169 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 228
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 229 PLMPSPQFIKSYFSSFTDDIIS 250
>gi|440910700|gb|ELR60464.1| Mitochondrial import receptor subunit TOM70 [Bos grunniens mutus]
Length = 609
Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 190 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 249
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 250 PLMPSPQFIKSYFSSFTDDIIS 271
>gi|355725598|gb|AES08607.1| translocase of outer mitochondrial membrane 70-like protein A
[Mustela putorius furo]
Length = 581
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 205 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 264
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 265 PLMPSPQFIKSYFSSFTDDIIS 286
>gi|303390270|ref|XP_003073366.1| DNA-directed RNA polymerase II fourth largest subunit
[Encephalitozoon intestinalis ATCC 50506]
gi|303302512|gb|ADM12006.1| DNA-directed RNA polymerase II fourth largest subunit
[Encephalitozoon intestinalis ATCC 50506]
Length = 104
Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 114 MDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEH 173
M EA ++LEG +E+ AD F L Y + + L + S
Sbjct: 1 MLAEARYLLEGQKER---FRADFRSNASKIFRSTLGYLDEFCRIKDKSVAEDLRTTFSGL 57
Query: 174 GVTDGEICVIANICPETVEEAYAIVPSL 201
G ++ EI ++ ++ P++VEEA +++PSL
Sbjct: 58 GFSEVEIALLGSLFPQSVEEAKSLIPSL 85
>gi|296226401|ref|XP_002758910.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Callithrix
jacchus]
Length = 608
Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 189 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 248
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 249 PLMPSPQFIKSYFSSFTDDIIS 270
>gi|114588180|ref|XP_526255.2| PREDICTED: mitochondrial import receptor subunit TOM70 isoform 3
[Pan troglodytes]
gi|397502644|ref|XP_003821960.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Pan
paniscus]
gi|410227150|gb|JAA10794.1| translocase of outer mitochondrial membrane 70 homolog A [Pan
troglodytes]
gi|410262170|gb|JAA19051.1| translocase of outer mitochondrial membrane 70 homolog A [Pan
troglodytes]
gi|410297936|gb|JAA27568.1| translocase of outer mitochondrial membrane 70 homolog A [Pan
troglodytes]
gi|410349763|gb|JAA41485.1| translocase of outer mitochondrial membrane 70 homolog A [Pan
troglodytes]
Length = 608
Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 189 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 248
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 249 PLMPSPQFIKSYFSSFTDDIIS 270
>gi|158302373|ref|XP_321930.4| AGAP001228-PA [Anopheles gambiae str. PEST]
gi|157012920|gb|EAA01792.4| AGAP001228-PA [Anopheles gambiae str. PEST]
Length = 161
Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
F K Y F N + + + L + + E+ + N+CP + EEA A++PSL+
Sbjct: 80 FHKTYTYTNEFRKFRNKETIASVRSLLMQKKLHKFELAALGNLCPASPEEAKALIPSLE 138
>gi|403306109|ref|XP_003943587.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Saimiri
boliviensis boliviensis]
Length = 608
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 189 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 248
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 249 PLMPSPQFIKSYFSSFTDDIIS 270
>gi|332225229|ref|XP_003261782.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Nomascus
leucogenys]
Length = 608
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 189 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 248
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 249 PLMPSPQFIKSYFSSFTDDIIS 270
>gi|54607135|ref|NP_055635.3| mitochondrial import receptor subunit TOM70 [Homo sapiens]
gi|426341399|ref|XP_004036025.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Gorilla
gorilla gorilla]
gi|14285643|sp|O94826.1|TOM70_HUMAN RecName: Full=Mitochondrial import receptor subunit TOM70; AltName:
Full=Mitochondrial precursor proteins import receptor;
AltName: Full=Translocase of outer membrane 70 kDa
subunit
gi|13177706|gb|AAH03633.1| Translocase of outer mitochondrial membrane 70 homolog A (S.
cerevisiae) [Homo sapiens]
gi|31419793|gb|AAH52994.1| Translocase of outer mitochondrial membrane 70 homolog A (S.
cerevisiae) [Homo sapiens]
gi|119600228|gb|EAW79822.1| translocase of outer mitochondrial membrane 70 homolog A (yeast),
isoform CRA_a [Homo sapiens]
gi|119600229|gb|EAW79823.1| translocase of outer mitochondrial membrane 70 homolog A (yeast),
isoform CRA_a [Homo sapiens]
gi|123999829|gb|ABM87423.1| translocase of outer mitochondrial membrane 70 homolog A (S.
cerevisiae) [synthetic construct]
gi|168267528|dbj|BAG09820.1| translocase of outer mitochondrial membrane 70 homolog A [synthetic
construct]
Length = 608
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 189 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 248
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 249 PLMPSPQFIKSYFSSFTDDIIS 270
>gi|297670504|ref|XP_002813404.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Pongo
abelii]
Length = 608
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 189 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 248
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 249 PLMPSPQFIKSYFSSFTDDIIS 270
>gi|145350124|ref|XP_001419467.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|145357498|ref|XP_001422955.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579699|gb|ABO97760.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583199|gb|ABP01314.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 147
Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
F+K L YAK S T+ A + + + G+ D E I+N+ P+ +EA +VPSL+
Sbjct: 64 FEKTLAYAKRFSGNTSSTAAAAIRELHNNSGLHDFEGAAISNLKPQDWDEAKTLVPSLE 122
>gi|410970316|ref|XP_003991631.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Felis
catus]
Length = 609
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 190 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 249
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 250 PLMPSPQFIKSYFSSFTDDIIS 271
>gi|345795927|ref|XP_535719.3| PREDICTED: mitochondrial import receptor subunit TOM70 [Canis lupus
familiaris]
Length = 609
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 190 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 249
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 250 PLMPSPQFIKSYFSSFTDDIIS 271
>gi|348567011|ref|XP_003469295.1| PREDICTED: mitochondrial import receptor subunit TOM70-like [Cavia
porcellus]
Length = 609
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 190 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 249
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 250 PLMPSPQFIKSYFSSFTDDIIS 271
>gi|351710135|gb|EHB13054.1| Mitochondrial import receptor subunit TOM70 [Heterocephalus glaber]
Length = 609
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 190 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 249
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 250 PLMPSPQFIKSYFSSFTDDIIS 271
>gi|347965542|ref|XP_003435782.1| AGAP001228-PB [Anopheles gambiae str. PEST]
gi|333470463|gb|EGK97631.1| AGAP001228-PB [Anopheles gambiae str. PEST]
Length = 139
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 144 FDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
F K Y F N + + + L + + E+ + N+CP + EEA A++PSL+
Sbjct: 58 FHKTYTYTNEFRKFRNKETIASVRSLLMQKKLHKFELAALGNLCPASPEEAKALIPSLE 116
>gi|388454166|ref|NP_001253082.1| mitochondrial import receptor subunit TOM70 [Macaca mulatta]
gi|355559283|gb|EHH16011.1| hypothetical protein EGK_11235 [Macaca mulatta]
gi|380787847|gb|AFE65799.1| mitochondrial import receptor subunit TOM70 [Macaca mulatta]
gi|383408917|gb|AFH27672.1| mitochondrial import receptor subunit TOM70 [Macaca mulatta]
Length = 608
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 189 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 248
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 249 PLMPSPQFIKSYFSSFTDDIIS 270
>gi|333984640|ref|YP_004513850.1| UvrABC system protein B [Methylomonas methanica MC09]
gi|333808681|gb|AEG01351.1| UvrABC system protein B [Methylomonas methanica MC09]
Length = 697
Score = 37.4 bits (85), Expect = 4.1, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 33 NSAKSKRGRKVQFNTEGLSEGKFTFSSKSDGKFETTYGKGGLTKGGKGDKVANGA---KV 89
+ + +R +++ FN E + K F S +D + G GG G + KVA A K
Sbjct: 594 DETERRRAKQIAFNKEHHIQPKTIFKSVTDILEISIPGSGGSIAGARA-KVAEPASEYKA 652
Query: 90 SVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTI 138
K+A ++E+++ ++AK L EAAH +++Q+ LL A+ +
Sbjct: 653 MTPKQAAKTLKQLEEKMYRHAKNLEFEEAAH----VRDQIKLLQAEMVV 697
>gi|344294611|ref|XP_003419010.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Loxodonta
africana]
Length = 610
Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 190 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 249
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 250 PLMPSPQFIKSYFSSFTDDIIS 271
>gi|355746369|gb|EHH50983.1| hypothetical protein EGM_10294, partial [Macaca fascicularis]
Length = 600
Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 181 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 240
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 241 PLMPSPQFIKSYFSSFTDDIIS 262
>gi|402858878|ref|XP_003893908.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Papio
anubis]
Length = 608
Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 189 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 248
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 249 PLMPSPQFIKSYFSSFTDDIIS 270
>gi|67972314|dbj|BAE02499.1| unnamed protein product [Macaca fascicularis]
Length = 590
Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 171 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 230
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 231 PLMPSPQFIKSYFSSFTDDIIS 252
>gi|431901666|gb|ELK08543.1| Mitochondrial import receptor subunit TOM70 [Pteropus alecto]
Length = 609
Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 190 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 249
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 250 PLMPSPQFIKSYFSSFTDDIIS 271
>gi|395821344|ref|XP_003784004.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Otolemur
garnettii]
Length = 609
Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 190 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 249
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 250 PLMPSPQFIKSYFSSFTDDIIS 271
>gi|47058988|ref|NP_997684.1| mitochondrial import receptor subunit TOM70 [Rattus norvegicus]
gi|81911805|sp|Q75Q39.1|TOM70_RAT RecName: Full=Mitochondrial import receptor subunit TOM70; AltName:
Full=Mitochondrial precursor proteins import receptor;
AltName: Full=Translocase of outer membrane 70 kDa
subunit
gi|42733539|dbj|BAD11366.1| TOM70 [Rattus norvegicus]
gi|68534716|gb|AAH98640.1| Translocase of outer mitochondrial membrane 70 homolog A (S.
cerevisiae) [Rattus norvegicus]
Length = 610
Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q + ++L AD +K+ + Y
Sbjct: 191 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNEQSMLLADKVLKLLGKENAKEKYKNRE 250
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 251 PLMPSPQFIKSYFSSFTDDIIS 272
>gi|417411224|gb|JAA52057.1| Putative translocase of outer mitochondrial membrane complex
subunit, partial [Desmodus rotundus]
Length = 500
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 81 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 140
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 141 PLMPSPQFIKSYFSSFTDDIIS 162
>gi|194380862|dbj|BAG63999.1| unnamed protein product [Homo sapiens]
Length = 501
Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 82 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 141
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 142 PLMPSPQFIKSYFSSFTDDIIS 163
>gi|395518911|ref|XP_003763599.1| PREDICTED: mitochondrial import receptor subunit TOM70 [Sarcophilus
harrisii]
Length = 554
Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 135 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 194
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 195 PLMPSPQFIKSYFSSFTDDIIS 216
>gi|12848607|dbj|BAB28018.1| unnamed protein product [Mus musculus]
Length = 611
Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 14/180 (7%)
Query: 7 GKGGGVGGGGKTSLKSIPASLGGKDDNSAKSKRGR---KVQFNTEGLSEGKFTFSSKSDG 63
G G G G + S+ ++ K+ + K G+ +Q TE +S ++ +
Sbjct: 98 GSGHHDGSGDSLEMSSLDSAQAAKNKGNKYFKAGKYEQAIQCYTEAIS----LCPTEKNV 153
Query: 64 KFETTYGK--GGLTKGGKGDKVANGAKVSV-----VKEALPLELRVEQELPKNAKCLMDC 116
T Y + K +VA +V +AL + ++L +CL D
Sbjct: 154 DLSTFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRRAKAHEKLDNKKECLEDV 213
Query: 117 EAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVT 176
A ILEG Q + ++L AD +K+ + Y +PQ +K F S ++ ++
Sbjct: 214 TAVCILEGFQNEQSMLLADKVLKLLGKENAKEKYKNREPLMPSPQFIKSYFSSFTDDIIS 273
>gi|449277464|gb|EMC85620.1| Mitochondrial import receptor subunit TOM70, partial [Columba
livia]
Length = 501
Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 82 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 141
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 142 PLMPSPQFIKSYFSSFTDDIIS 163
>gi|74180003|dbj|BAE36547.1| unnamed protein product [Mus musculus]
Length = 611
Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q + ++L AD +K+ + Y
Sbjct: 192 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNEQSMLLADKVLKLLGKENAKEKYKNRE 251
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 252 PLMPSPQFIKSYFSSFTDDIIS 273
>gi|27552760|ref|NP_613065.2| mitochondrial import receptor subunit TOM70 [Mus musculus]
gi|342187059|sp|Q9CZW5.2|TOM70_MOUSE RecName: Full=Mitochondrial import receptor subunit TOM70; AltName:
Full=Mitochondrial precursor proteins import receptor;
AltName: Full=Translocase of outer membrane 70 kDa
subunit
gi|26350647|dbj|BAC38960.1| unnamed protein product [Mus musculus]
gi|34785646|gb|AAH57096.1| Translocase of outer mitochondrial membrane 70 homolog A (yeast)
[Mus musculus]
gi|74211396|dbj|BAE26448.1| unnamed protein product [Mus musculus]
gi|74219563|dbj|BAE29552.1| unnamed protein product [Mus musculus]
gi|187951439|gb|AAI39421.1| Translocase of outer mitochondrial membrane 70 homolog A (yeast)
[Mus musculus]
gi|187957596|gb|AAI39422.1| Translocase of outer mitochondrial membrane 70 homolog A (yeast)
[Mus musculus]
Length = 611
Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q + ++L AD +K+ + Y
Sbjct: 192 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNEQSMLLADKVLKLLGKENAKEKYKNRE 251
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 252 PLMPSPQFIKSYFSSFTDDIIS 273
>gi|327268894|ref|XP_003219230.1| PREDICTED: mitochondrial import receptor subunit TOM70-like [Anolis
carolinensis]
Length = 548
Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%)
Query: 94 EALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKT 153
+AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 128 KALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNR 187
Query: 154 HSHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 188 EPLMPSPQFIKSYFSSFTDDIIS 210
>gi|290996786|ref|XP_002680963.1| predicted protein [Naegleria gruberi]
gi|284094585|gb|EFC48219.1| predicted protein [Naegleria gruberi]
Length = 141
Score = 36.2 bits (82), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 14/108 (12%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHS---HFTNPQAVK 164
K+ +CL E A +L +E+ + + T I FDK L YA+ A+K
Sbjct: 19 KDRQCLTISEVAQMLSKKKEE---VEQEQTDYINDVFDKSLTYARRFGGGLSVETTMAIK 75
Query: 165 G--------LFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKVW 204
L S + +I +AN+ P EEA ++PSLK +
Sbjct: 76 SALGRATVTLKDSQERRKLQPFQIAQLANLMPGDAEEAATLIPSLKAF 123
>gi|335775041|gb|AEH58439.1| mitochondrial import receptor subunit TOM7-like protein, partial
[Equus caballus]
Length = 416
Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 101 RVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNP 160
+ ++L +CL D A ILEG Q Q ++L AD +K+ Y +P
Sbjct: 3 KAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNREPLMPSP 62
Query: 161 QAVKGLFQSLSEHGVT 176
Q +K F S ++ ++
Sbjct: 63 QFIKSYFSSFTDDIIS 78
>gi|124800957|ref|XP_001349565.1| DNA-directed RNA polymerase II 16 kDa subunit, putative [Plasmodium
falciparum 3D7]
gi|3845133|gb|AAC71838.1| DNA-directed RNA polymerase II 16 kDa subunit, putative [Plasmodium
falciparum 3D7]
Length = 132
Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLS---ADPTIKIPVSFDKGLLYAKTHSHFTNPQAVK 164
KN KCL CE IL +Q+ L S + I S+D YA + N ++
Sbjct: 19 KNCKCLNLCELQLIL---GDQLRLTSKRNEEAQALIKSSYD----YANKFAAIKNRSSIV 71
Query: 165 GLFQSLSEHG-VTDGEICVIANICPETVEEAYAIVPSL 201
+ +L G + + EI ++ N+ P+T+ EA ++PSL
Sbjct: 72 DIRTNLERIGDLHEYEIAMLVNLLPKTILEARYLIPSL 109
>gi|354485509|ref|XP_003504926.1| PREDICTED: mitochondrial import receptor subunit TOM70-like
[Cricetulus griseus]
Length = 506
Score = 36.2 bits (82), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q + ++L AD +K+ + Y
Sbjct: 87 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNEQSMLLADKVLKLLGKENAKEKYKNRE 146
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 147 PLMPSPQFIKSYFSSFTDDIIS 168
>gi|116206310|ref|XP_001228964.1| hypothetical protein CHGG_02448 [Chaetomium globosum CBS 148.51]
gi|88183045|gb|EAQ90513.1| hypothetical protein CHGG_02448 [Chaetomium globosum CBS 148.51]
Length = 3887
Score = 36.2 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 20/182 (10%)
Query: 2 EKGGGGKGGGVGGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSKS 61
EK G+ G G L A+ GG D A + Q TE +EG S+ +
Sbjct: 3258 EKARRGQAAGNKPAGSPQLTKKDAAAGGSDSRPATANGDAAGQAKTEPKAEGDVA-STPT 3316
Query: 62 DGKFETTYGKGGLTKGGKGDKVANGAK--VSVVKEALPL-----ELRVEQELPKNAKCLM 114
TT G GG K + +SV+K A PL E V+Q + K+ KC
Sbjct: 3317 GPPSATTGPAQGEQTGGSQKKPWELTEEIMSVLKTAFPLLALSMETMVDQ-IQKHFKCPP 3375
Query: 115 DCEAAHILEG-IQEQMALLSADPT-----IKIPVSFDKGLL-YAKTHSHFTNPQAVKGLF 167
D +A ++ + + +A +S PT +K+P + + + +A+T P ++G F
Sbjct: 3376 DEDAYRLIVALLNDGLAYVSRMPTSYARDVKLPPATENNITRFAET----ILPSHIRGTF 3431
Query: 168 QS 169
++
Sbjct: 3432 EA 3433
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,552,263,721
Number of Sequences: 23463169
Number of extensions: 150352032
Number of successful extensions: 1016294
Number of sequences better than 100.0: 924
Number of HSP's better than 100.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 696
Number of HSP's that attempted gapping in prelim test: 997224
Number of HSP's gapped (non-prelim): 17006
length of query: 206
length of database: 8,064,228,071
effective HSP length: 136
effective length of query: 70
effective length of database: 9,168,204,383
effective search space: 641774306810
effective search space used: 641774306810
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 73 (32.7 bits)