BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028639
(206 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54S04|RPB4_DICDI DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium
discoideum GN=polr2d PE=3 SV=1
Length = 155
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 13/108 (12%)
Query: 108 KNAKCLMDCEAAHILE---GIQEQ----------MALLSADPTIKIPVSFDKGLLYAKTH 154
K+AK L++ E A +LE GI E + L + I +F K L YA+
Sbjct: 27 KDAKFLLNSEVAILLEHRKGISESEGTEFPQNTLLIHLYYNSINDIIRTFHKTLAYAEKF 86
Query: 155 SHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
S + N ++K + +LS+ + + EI +AN+CPE +EA +++PSLK
Sbjct: 87 SRYKNKTSIKQVRTALSKQNLEEFEIASLANLCPEISDEAKSLIPSLK 134
>sp|Q9D7M8|RPB4_MOUSE DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus
GN=Polr2d PE=2 SV=2
Length = 142
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EE+ A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLE 119
>sp|O15514|RPB4_HUMAN DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens
GN=POLR2D PE=1 SV=1
Length = 142
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+ A+ L++ E +LE ++Q SA+ ++ F K L Y S F N + + +
Sbjct: 27 ETAETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ +AN+CPET EE+ A++PSL+
Sbjct: 85 SLLLQKKLHKFELACLANLCPETAEESKALIPSLE 119
>sp|Q9VEA5|RPB4_DROME DNA-directed RNA polymerase II 16 kDa polypeptide OS=Drosophila
melanogaster GN=Rpb4 PE=2 SV=5
Length = 139
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 108 KNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLF 167
+NA+ L+ E +L+ + Q SAD + F K Y + F N + +
Sbjct: 24 ENAETLLISEVHMLLDHRKRQNE--SADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSAR 81
Query: 168 QSLSEHGVTDGEICVIANICPETVEEAYAIVPSLK 202
L + + E+ + N+CPE EEA A++PSL+
Sbjct: 82 SLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLE 116
>sp|O94826|TOM70_HUMAN Mitochondrial import receptor subunit TOM70 OS=Homo sapiens
GN=TOMM70A PE=1 SV=1
Length = 608
Score = 37.4 bits (85), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q Q ++L AD +K+ Y
Sbjct: 189 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLLADKVLKLLGKEKAKEKYKNRE 248
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 249 PLMPSPQFIKSYFSSFTDDIIS 270
>sp|Q75Q39|TOM70_RAT Mitochondrial import receptor subunit TOM70 OS=Rattus norvegicus
GN=Tomm70a PE=1 SV=1
Length = 610
Score = 37.0 bits (84), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q + ++L AD +K+ + Y
Sbjct: 191 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNEQSMLLADKVLKLLGKENAKEKYKNRE 250
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 251 PLMPSPQFIKSYFSSFTDDIIS 272
>sp|Q9CZW5|TOM70_MOUSE Mitochondrial import receptor subunit TOM70 OS=Mus musculus
GN=Tomm70a PE=1 SV=2
Length = 611
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 95 ALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTH 154
AL + ++L +CL D A ILEG Q + ++L AD +K+ + Y
Sbjct: 192 ALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNEQSMLLADKVLKLLGKENAKEKYKNRE 251
Query: 155 SHFTNPQAVKGLFQSLSEHGVT 176
+PQ +K F S ++ ++
Sbjct: 252 PLMPSPQFIKSYFSSFTDDIIS 273
>sp|Q18B27|OBG_CLOD6 GTPase obg OS=Clostridium difficile (strain 630) GN=obg PE=3 SV=1
Length = 425
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 13/162 (8%)
Query: 33 NSAKSKRGRKVQFNTEGL--SEGKFT-FSSKSDGKFETTYGKGGLTKGGKGDKVANGAKV 89
N SKR + V N + E KF F S+ +G+ T + T+ G + +A +K+
Sbjct: 269 NEKLSKRPQVVVANKFDILEDESKFEKFKSELEGRGYTVFKMSAATRQGIDEVIAYVSKM 328
Query: 90 SVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLS--ADPTIKIPVSFDKG 147
+KE +EL E+E+ + + E I I++ + +++ A I V+FD
Sbjct: 329 --LKEVEDVELVSEEEMYRPELDIGTEEELSI--DIEDGVYVVTGKALRRIMYSVNFDD- 383
Query: 148 LLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPE 189
++ +F +G+F L E G+ DG++ I + E
Sbjct: 384 ---MESLQYFQKAMESQGVFDRLREMGIEDGDVVKIYELEFE 422
>sp|O86487|SDRC_STAAE Serine-aspartate repeat-containing protein C OS=Staphylococcus
aureus (strain Newman) GN=sdrC PE=3 SV=2
Length = 947
Score = 31.6 bits (70), Expect = 4.1, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%)
Query: 29 GKDDNSAKSKRGRKVQFNTE-----GLSE----GKFTFSSKSDGKFETTYGK-GGLTKGG 78
GK D++ K +G KV E G +E GK+ F + GK++ + K GLT+ G
Sbjct: 622 GKQDSTEKGIKGVKVTLQNEKGEVIGTTETDENGKYRFDNLDSGKYKVIFEKPAGLTQTG 681
Query: 79 ----KGDKVANGAKVSV 91
+ DK A+G +V V
Sbjct: 682 TNTTEDDKDADGGEVDV 698
>sp|Q5HIB4|SDRC_STAAC Serine-aspartate repeat-containing protein C OS=Staphylococcus
aureus (strain COL) GN=sdrC PE=3 SV=1
Length = 947
Score = 31.6 bits (70), Expect = 4.1, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%)
Query: 29 GKDDNSAKSKRGRKVQFNTE-----GLSE----GKFTFSSKSDGKFETTYGK-GGLTKGG 78
GK D++ K +G KV E G +E GK+ F + GK++ + K GLT+ G
Sbjct: 622 GKQDSTEKGIKGVKVTLQNEKGEVIGTTETDENGKYRFDNLDSGKYKVIFEKPAGLTQTG 681
Query: 79 ----KGDKVANGAKVSV 91
+ DK A+G +V V
Sbjct: 682 TNTTEDDKDADGGEVDV 698
>sp|Q2G0L5|SDRC_STAA8 Serine-aspartate repeat-containing protein C OS=Staphylococcus
aureus (strain NCTC 8325) GN=sdrC PE=3 SV=1
Length = 995
Score = 31.6 bits (70), Expect = 4.1, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%)
Query: 29 GKDDNSAKSKRGRKVQFNTE-----GLSE----GKFTFSSKSDGKFETTYGK-GGLTKGG 78
GK D++ K +G KV E G +E GK+ F + GK++ + K GLT+ G
Sbjct: 622 GKQDSTEKGIKGVKVTLQNEKGEVIGTTETDENGKYRFDNLDSGKYKVIFEKPAGLTQTG 681
Query: 79 ----KGDKVANGAKVSV 91
+ DK A+G +V V
Sbjct: 682 TNTTEDDKDADGGEVDV 698
>sp|Q2FJ79|SDRC_STAA3 Serine-aspartate repeat-containing protein C OS=Staphylococcus
aureus (strain USA300) GN=sdrC PE=3 SV=1
Length = 947
Score = 31.6 bits (70), Expect = 4.2, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%)
Query: 29 GKDDNSAKSKRGRKVQFNTE-----GLSE----GKFTFSSKSDGKFETTYGK-GGLTKGG 78
GK D++ K +G KV E G +E GK+ F + GK++ + K GLT+ G
Sbjct: 622 GKQDSTEKGIKGVKVTLQNEKGEVIGTTETDENGKYRFDNLDSGKYKVIFEKPAGLTQTG 681
Query: 79 ----KGDKVANGAKVSV 91
+ DK A+G +V V
Sbjct: 682 TNTTEDDKDADGGEVDV 698
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,365,992
Number of Sequences: 539616
Number of extensions: 3689952
Number of successful extensions: 25022
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 165
Number of HSP's that attempted gapping in prelim test: 21446
Number of HSP's gapped (non-prelim): 2714
length of query: 206
length of database: 191,569,459
effective HSP length: 112
effective length of query: 94
effective length of database: 131,132,467
effective search space: 12326451898
effective search space used: 12326451898
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)