Query 028640
Match_columns 206
No_of_seqs 132 out of 142
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 00:41:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev1_A Anabena TIC22; TIC22 fo 100.0 2E-58 7E-63 395.5 21.3 196 1-204 2-223 (252)
2 4e6z_A Apicoplast TIC22, putat 100.0 1.3E-49 4.5E-54 346.0 16.0 185 2-202 66-269 (279)
3 4ev1_A Anabena TIC22; TIC22 fo 99.2 4E-11 1.4E-15 102.6 7.3 94 9-107 129-228 (252)
4 4e6z_A Apicoplast TIC22, putat 98.7 6.4E-08 2.2E-12 83.9 9.6 85 11-107 190-274 (279)
5 2lrn_A Thiol:disulfide interch 85.2 4.2 0.00014 29.6 7.9 125 12-153 8-143 (152)
6 2z0r_A Putative uncharacterize 82.1 3.8 0.00013 29.9 6.1 50 13-71 7-56 (103)
7 3or5_A Thiol:disulfide interch 80.4 9.3 0.00032 27.8 8.2 129 12-153 13-153 (165)
8 4eo3_A Bacterioferritin comigr 70.8 5.5 0.00019 34.1 5.2 75 10-93 1-86 (322)
9 3fw2_A Thiol-disulfide oxidore 70.3 4.4 0.00015 29.4 3.9 124 12-151 10-148 (150)
10 2yzh_A Probable thiol peroxida 67.1 20 0.0007 26.6 7.2 76 12-91 26-110 (171)
11 1xvw_A Hypothetical protein RV 64.8 16 0.00055 26.6 6.1 79 12-91 14-100 (160)
12 3drn_A Peroxiredoxin, bacterio 63.8 9.4 0.00032 28.2 4.7 77 12-92 7-94 (161)
13 3erw_A Sporulation thiol-disul 58.7 42 0.0015 23.2 7.3 58 12-75 14-77 (145)
14 3fk8_A Disulphide isomerase; A 58.2 8.3 0.00028 27.3 3.3 43 11-55 90-132 (133)
15 4gqc_A Thiol peroxidase, perox 57.1 5.7 0.0002 30.1 2.4 77 12-93 10-99 (164)
16 1q98_A Thiol peroxidase, TPX; 55.9 34 0.0012 25.2 6.7 74 12-92 22-107 (165)
17 3p7x_A Probable thiol peroxida 55.5 18 0.00063 26.7 5.1 77 12-92 25-109 (166)
18 2wfc_A Peroxiredoxin 5, PRDX5; 53.3 11 0.00038 28.6 3.5 77 12-92 8-100 (167)
19 3zrd_A Thiol peroxidase; oxido 53.3 36 0.0012 26.4 6.6 74 12-92 57-142 (200)
20 4hde_A SCO1/SENC family lipopr 52.9 14 0.00049 27.9 4.1 60 12-74 11-77 (170)
21 4g2e_A Peroxiredoxin; redox pr 52.1 4.4 0.00015 30.4 0.9 77 12-93 9-96 (157)
22 1psq_A Probable thiol peroxida 48.4 35 0.0012 25.1 5.6 77 12-91 21-105 (163)
23 3gkn_A Bacterioferritin comigr 47.6 6.5 0.00022 28.9 1.3 80 12-92 12-100 (163)
24 3fkf_A Thiol-disulfide oxidore 46.8 70 0.0024 22.2 8.5 123 12-151 10-146 (148)
25 3bid_A UPF0339 protein NMB1088 46.8 41 0.0014 22.2 5.0 40 12-60 11-50 (64)
26 3ixr_A Bacterioferritin comigr 45.0 3.3 0.00011 31.7 -0.8 79 13-92 31-116 (179)
27 3kij_A Probable glutathione pe 44.0 24 0.00081 26.5 4.1 59 12-75 17-81 (180)
28 3mng_A Peroxiredoxin-5, mitoch 43.1 13 0.00045 28.6 2.4 78 12-93 20-113 (173)
29 3kcm_A Thioredoxin family prot 39.3 62 0.0021 22.9 5.6 122 12-153 7-145 (154)
30 3gl3_A Putative thiol:disulfid 36.4 43 0.0015 23.7 4.3 120 12-152 8-143 (152)
31 2jsy_A Probable thiol peroxida 35.2 31 0.0011 25.2 3.4 77 12-91 23-107 (167)
32 1yj7_A ESCJ; mixed alpha/beta, 35.0 79 0.0027 24.6 5.8 61 41-116 8-68 (171)
33 3g74_A Protein of unknown func 34.8 16 0.00056 26.2 1.7 42 2-60 34-75 (100)
34 3ewl_A Uncharacterized conserv 34.6 55 0.0019 22.8 4.6 123 12-149 6-139 (142)
35 2v1m_A Glutathione peroxidase; 34.0 37 0.0013 24.5 3.6 58 12-74 10-73 (169)
36 3ph9_A Anterior gradient prote 33.8 7.8 0.00027 29.5 -0.3 40 11-57 99-143 (151)
37 1jfu_A Thiol:disulfide interch 33.5 69 0.0024 23.7 5.2 59 12-75 39-103 (186)
38 2p5q_A Glutathione peroxidase 33.5 38 0.0013 24.5 3.6 58 12-74 11-74 (170)
39 3raz_A Thioredoxin-related pro 33.0 1.1E+02 0.0039 21.5 6.2 47 5-60 94-144 (151)
40 2fc8_A NCL protein; structure 33.0 1.1E+02 0.0037 20.4 6.5 48 1-57 27-77 (102)
41 3uma_A Hypothetical peroxiredo 32.8 16 0.00053 28.5 1.4 78 12-93 31-126 (184)
42 2f9s_A Thiol-disulfide oxidore 32.8 65 0.0022 22.7 4.8 123 12-153 5-140 (151)
43 2obi_A PHGPX, GPX-4, phospholi 31.5 41 0.0014 25.1 3.6 58 12-74 26-89 (183)
44 3u5r_E Uncharacterized protein 31.1 35 0.0012 26.7 3.2 127 12-153 37-189 (218)
45 1xvq_A Thiol peroxidase; thior 31.0 1.2E+02 0.0041 22.4 6.2 74 12-93 23-108 (175)
46 3eur_A Uncharacterized protein 30.9 59 0.002 22.9 4.2 64 12-76 10-78 (142)
47 3hdc_A Thioredoxin family prot 30.7 1E+02 0.0035 22.0 5.6 76 12-92 20-103 (158)
48 3keb_A Probable thiol peroxida 30.7 45 0.0015 27.1 3.9 123 12-153 27-178 (224)
49 3me7_A Putative uncharacterize 30.5 50 0.0017 24.6 3.9 131 12-153 6-164 (170)
50 2y9j_Y Lipoprotein PRGK, prote 30.5 86 0.0029 24.4 5.4 64 41-119 6-70 (170)
51 2lrt_A Uncharacterized protein 30.3 36 0.0012 24.7 3.0 129 11-152 13-146 (152)
52 3ztl_A Thioredoxin peroxidase; 29.7 23 0.0008 27.9 1.9 81 12-93 45-142 (222)
53 2p31_A CL683, glutathione pero 29.4 47 0.0016 24.9 3.6 58 12-74 28-91 (181)
54 4fo5_A Thioredoxin-like protei 28.8 50 0.0017 23.3 3.5 61 12-75 12-75 (143)
55 1lu4_A Soluble secreted antige 28.6 1.1E+02 0.0036 20.8 5.2 58 12-75 3-65 (136)
56 2gs3_A PHGPX, GPX-4, phospholi 28.6 49 0.0017 24.8 3.6 59 12-75 28-92 (185)
57 2a4v_A Peroxiredoxin DOT5; yea 28.2 29 0.00099 25.3 2.1 79 12-92 12-99 (159)
58 2ggt_A SCO1 protein homolog, m 26.2 35 0.0012 24.6 2.2 131 13-152 3-162 (164)
59 2l5o_A Putative thioredoxin; s 25.6 65 0.0022 22.7 3.7 124 12-154 7-144 (153)
60 1tp9_A Peroxiredoxin, PRX D (t 25.4 52 0.0018 24.2 3.1 77 12-93 9-105 (162)
61 2lja_A Putative thiol-disulfid 25.3 79 0.0027 22.2 4.1 123 12-153 8-145 (152)
62 1zzo_A RV1677; thioredoxin fol 24.4 1.6E+02 0.0056 19.7 5.6 57 12-74 4-65 (136)
63 2rem_A Disulfide oxidoreductas 24.1 1.7E+02 0.0058 21.6 6.0 34 111-152 152-185 (193)
64 2b7k_A SCO1 protein; metalloch 24.1 89 0.003 23.8 4.4 76 13-91 21-112 (200)
65 1vsq_C Mannose-specific phosph 23.8 2.5E+02 0.0085 21.5 7.8 72 65-152 57-139 (165)
66 1nrz_A PTS system, sorbose-spe 23.5 2.5E+02 0.0086 21.5 8.2 72 65-152 54-136 (164)
67 1xzo_A BSSCO, hypothetical pro 23.3 62 0.0021 23.4 3.2 60 12-74 12-78 (174)
68 1ble_A Fructose permease; phos 22.9 2.3E+02 0.0077 21.7 6.5 72 65-152 55-137 (163)
69 2i81_A 2-Cys peroxiredoxin; st 22.6 65 0.0022 25.2 3.3 76 12-92 26-124 (213)
70 1we0_A Alkyl hydroperoxide red 22.4 29 0.00099 26.1 1.2 127 12-153 6-159 (187)
71 4a2c_A Galactitol-1-phosphate 22.1 1.3E+02 0.0045 24.8 5.4 49 139-192 296-346 (346)
72 3syx_A Sprouty-related, EVH1 d 21.9 87 0.003 23.6 3.7 24 34-57 95-118 (130)
73 2v2g_A Peroxiredoxin 6; oxidor 21.8 56 0.0019 26.3 2.8 79 12-92 8-102 (233)
74 2rli_A SCO2 protein homolog, m 21.6 1.5E+02 0.0052 21.1 5.1 130 14-153 7-166 (171)
75 1qmv_A Human thioredoxin perox 21.1 79 0.0027 23.9 3.5 79 12-92 10-106 (197)
76 2c0d_A Thioredoxin peroxidase 21.0 96 0.0033 24.4 4.1 76 12-92 30-128 (221)
77 3lwa_A Secreted thiol-disulfid 20.7 1.2E+02 0.0041 22.2 4.4 31 11-42 35-67 (183)
78 3gyk_A 27KDA outer membrane pr 20.4 2.5E+02 0.0085 20.3 12.0 32 112-151 142-173 (175)
79 2pju_A Propionate catabolism o 20.2 3.4E+02 0.012 21.7 7.6 58 35-100 131-189 (225)
80 1x60_A Sporulation-specific N- 20.2 1.8E+02 0.0063 18.7 7.1 59 36-107 13-71 (79)
81 2l5l_A Thioredoxin; structural 20.1 2.3E+02 0.0077 19.7 5.8 46 5-60 83-130 (136)
No 1
>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}
Probab=100.00 E-value=2e-58 Score=395.54 Aligned_cols=196 Identities=23% Similarity=0.432 Sum_probs=184.9
Q ss_pred CCHHHHHHhcCCCcEEEEEcCCCCeEEEeccCC------CceEEEEEecHHHHHHHHHHHHh---cCc---cccCCCeEE
Q 028640 1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKT------GKSLGLMCFKKEDAEALLHQMKS---MDP---AMRKEGSRV 68 (206)
Q Consensus 1 L~~~~I~ekL~~VPVF~vtn~~g~~~l~~~~~~------~~~v~~fF~~~~DA~~~l~~lk~---~~p---~~~~~~~kV 68 (206)
||+++|+++|++||||+|||++|+||+++.+++ ++++++||||++||++||+++|+ +|| +++++ +||
T Consensus 2 L~e~eV~ekL~~VPVF~Itn~~G~Pll~~~~~~~~~~~~~~~V~~~F~s~~dA~~~L~~lk~~~~~np~~~~~~~~-~kV 80 (252)
T 4ev1_A 2 LSEQQIKEKLDSVPIYLVTNEKGLPLSRPLPNAPNGQKAGGSITGAYMSRQEAQAFINELRNAKNKDPKMQEIVKS-LQV 80 (252)
T ss_dssp CCHHHHHHHHTTSEEEEEECTTCCBCEEECCCCTTSCCSCSEEEEEESCHHHHHHHHHHHHHCSSCCHHHHHHHTT-CEE
T ss_pred CCHHHHHHHhcCCcEEEEECCCCCeEEEecCCccccccCCCeEEEEEecHHHHHHHHHHHHhccccCchhhhhccC-ceE
Confidence 899999999999999999999999999998762 57899999999999999999999 999 99988 999
Q ss_pred EEeechhhhhh------ccCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeec------ceeEeeC--CeeEee
Q 028640 69 VPVPLNKVFQL------KVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSR------SLVLRSQ--NKSYRP 134 (206)
Q Consensus 69 ~~v~L~~vy~l------~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~------~Lti~~~--~~~~~P 134 (206)
++|+|++||++ +.+++.|+|+|+++||++|+.|++++|+.+++|.|||||+++ +||++++ |++|+|
T Consensus 81 ~~vsL~~vyql~~~~~~k~~~l~F~fvP~~~qV~~A~~Ll~~~Gq~~~~f~gVPvF~~~~~~~~~~Lti~~~~~~~~~iP 160 (252)
T 4ev1_A 81 TAVPLGVIYQQLQQTKKDPNRLLFAFKPVDQEIKGAMDLLRQSGQQVNQFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVP 160 (252)
T ss_dssp EEEEHHHHHHHHHHTTTCTTCEEEEEECCHHHHHHHHHHHHTTTCCCSCCCSCEEEEEESSTTSCBCCEEETTTTEEEEE
T ss_pred EEeeHHHHHHHHHhhccCCcCceEEEcCCHHHHHHHHHHHHHcCCCcccCCCccEEEEecCCCCccEEEEeCCCCCEEEe
Confidence 99999999999 467899999999999999999999999999999999999999 6999999 999999
Q ss_pred eeecHHHHHHHHHHHhhcccccCCCCccCcEEEEeHHHHHHhhhcCCCCCCceEEEecCcccccCCcccc
Q 028640 135 VFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFDVSTNPNQA 204 (206)
Q Consensus 135 lFF~kedl~~~l~~~~~~~~~~~p~~~~~~I~V~~Le~vi~~m~~~~~~~~~~i~fiPp~~s~~~~~~~~ 204 (206)
|||+|+||+++|+++++++ |+ ++|+|++|++||++|++++|++|++++||||++|++...+.+
T Consensus 161 lFF~KedL~~~l~~~kkq~----P~---~~I~V~~Le~vI~~m~~~~d~~~~~ivfiPs~es~e~i~~~~ 223 (252)
T 4ev1_A 161 LFLSKQDAQGLLGQVKPKH----PK---ADIQVLDIDGVLQTLQDKNDTWLNQVVLVPSPESREYIRTLP 223 (252)
T ss_dssp EESSHHHHHHHHHHHTTTC----TT---CEEEEEEHHHHHHHHHHCCCGGGGGEEEECCHHHHHHHHTSC
T ss_pred eEecHHHHHHHHHHHHHhC----CC---CcEEEeeHHHHHHHHhcCcccccceEEEECCHHHHHHHHhcc
Confidence 9999999999999999986 54 779999999999999999999999999999999998776654
No 2
>4e6z_A Apicoplast TIC22, putative; TIC complex, import protein, transport protein; 2.15A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.3e-49 Score=345.97 Aligned_cols=185 Identities=22% Similarity=0.315 Sum_probs=163.2
Q ss_pred CHHHHHHhcCCCcEEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHh-cCccccCCCeEEEEeechhhhhh-
Q 028640 2 SAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKS-MDPAMRKEGSRVVPVPLNKVFQL- 79 (206)
Q Consensus 2 ~~~~I~ekL~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~-~~p~~~~~~~kV~~v~L~~vy~l- 79 (206)
++++|+|||++||||+|||++|+|+++++. ++++++||||++||+++|+++++ ++|+++++ +||+++||++||++
T Consensus 66 ~e~~I~EKL~~VPVF~Itn~~G~Pll~~~~--~~~V~~fF~s~~DA~a~L~el~k~~~~~~~~~-~kV~pvsL~kvy~l~ 142 (279)
T 4e6z_A 66 DERPIEEKLEVIPVFLITNYNSSPYIFQEN--EKQVCYMFLCPYDAENMLNDMIKYNGMKYNGN-IKIHNITMKKAYELM 142 (279)
T ss_dssp --CCHHHHSTTSEEEEEECTTCCBCCEEET--TEEEEEEESSHHHHHHHHHHHHHHCHHHHTTS-CEEEEEEHHHHHHHH
T ss_pred cHHhHHHHhcCCCEEEEEcCCCCEEEecCC--CCeEEEEECCHHHHHHHHHHHHhccCcccccC-ceEEEecHHHHHHHH
Confidence 689999999999999999999999999864 47899999999999999999865 55788888 99999999999987
Q ss_pred -----------------ccCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecceeEeeCCeeEeeeeecHHHH
Q 028640 80 -----------------KVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSYRPVFFRKEDL 142 (206)
Q Consensus 80 -----------------~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~Lti~~~~~~~~PlFF~kedl 142 (206)
+.+++.|+|+|+++||++|+.++++.|+ +++|||||++++||+++++++++|+||+||||
T Consensus 143 ~~~~~~~~~~i~~~~~~k~~~l~fr~vP~~~qV~~A~~ll~~~gq---~~~gVPVF~~~~Lti~k~~k~iiPlFF~keDL 219 (279)
T 4e6z_A 143 KEFLQLEKMEVNKEDSKKKQNIYWKLISSKRQLQNALYYLSFTKK---SELMYPVFYAENLYIQKDGSNIIPLFFDLEDL 219 (279)
T ss_dssp HHHHHHHHC----------CCEEEEEECCHHHHHHHHTTSCTTTS---TTCCSEEEEETTCCEECSSSEEEEEESSHHHH
T ss_pred hhcccccchhcccccccCCcceeeEecCCHHHHHHHHHHHHhcCC---cCCCccEEEEeeEEEeeCCeEEEeeEecHHHH
Confidence 2467999999999999999999988776 47899999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCCccCcEEEEeHHHHHHhhhcCCCCCCceEEEecCcccccCCcc
Q 028640 143 EKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFDVSTNPN 202 (206)
Q Consensus 143 ~~~l~~~~~~~~~~~p~~~~~~I~V~~Le~vi~~m~~~~~~~~~~i~fiPp~~s~~~~~~ 202 (206)
+++|++++++. |...+++|+|++|+++|..|+ +++++||||++|++...+
T Consensus 220 ~~~l~q~~~~~----p~~~~~~I~V~~L~~ll~~~d------~~kivFIPs~eSlefi~~ 269 (279)
T 4e6z_A 220 KEAIEEQKNKA----LSKVDYKIKVLNMVDLIFTED------HKKFGFVPSTQSVKYLDK 269 (279)
T ss_dssp HHHHHHHHTTC----SSCCCCCEEEEEHHHHHTCSC------CTTEEEECCHHHHHHHHH
T ss_pred HHHHHHhhhcC----CCCCCCceEEEhHHHHHhhCC------cCeEEEECCHHHHHHHHH
Confidence 99999998875 443378999999999998763 568999999999976543
No 3
>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}
Probab=99.17 E-value=4e-11 Score=102.58 Aligned_cols=94 Identities=18% Similarity=0.254 Sum_probs=75.8
Q ss_pred hcCCCcEEEEEcCCCCeEEEeccCC-CceEEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh-c-cCC--
Q 028640 9 RLAGVPVYALSNCNEEFVLVSGAKT-GKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL-K-VNG-- 83 (206)
Q Consensus 9 kL~~VPVF~vtn~~g~~~l~~~~~~-~~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l-~-~~~-- 83 (206)
.+.|||||.+..+.+..+|+...++ ++.+.+|||+++|++++|+++++++|+ .+|.+++|+.++.. . +++
T Consensus 129 ~f~gVPvF~~~~~~~~~~Lti~~~~~~~~~iPlFF~KedL~~~l~~~kkq~P~-----~~I~V~~Le~vI~~m~~~~d~~ 203 (252)
T 4ev1_A 129 QFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVPLFLSKQDAQGLLGQVKPKHPK-----ADIQVLDIDGVLQTLQDKNDTW 203 (252)
T ss_dssp CCCSCEEEEEESSTTSCBCCEEETTTTEEEEEEESSHHHHHHHHHHHTTTCTT-----CEEEEEEHHHHHHHHHHCCCGG
T ss_pred cCCCccEEEEecCCCCccEEEEeCCCCCEEEeeEecHHHHHHHHHHHHHhCCC-----CcEEEeeHHHHHHHHhcCcccc
Confidence 4568999999987777777664432 788999999999999999999999997 68999999999976 2 222
Q ss_pred -eeEEEecCHHHHHHHHHHHHHcCC
Q 028640 84 -VAFRLIPESTQVKNALREMEKAGF 107 (206)
Q Consensus 84 -~~f~~vP~~~qv~~A~~l~~~~g~ 107 (206)
-.+.|||+.+.+++++++.+..|+
T Consensus 204 ~~~ivfiPs~es~e~i~~~~~~~~~ 228 (252)
T 4ev1_A 204 LNQVVLVPSPESREYIRTLPKPPNT 228 (252)
T ss_dssp GGGEEEECCHHHHHHHHTSCCCC--
T ss_pred cceEEEECCHHHHHHHHhccccCCC
Confidence 478999999999999998654433
No 4
>4e6z_A Apicoplast TIC22, putative; TIC complex, import protein, transport protein; 2.15A {Plasmodium falciparum 3D7}
Probab=98.69 E-value=6.4e-08 Score=83.88 Aligned_cols=85 Identities=15% Similarity=0.223 Sum_probs=67.3
Q ss_pred CCCcEEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhccCCeeEEEec
Q 028640 11 AGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIP 90 (206)
Q Consensus 11 ~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~~~~~~f~~vP 90 (206)
.|||||.+.+ +.+. . +++.+.+|||+++|+++.+++.++++|.. .. .+|.+++|..+..-.. .-.|.|||
T Consensus 190 ~gVPVF~~~~-----Lti~-k-~~k~iiPlFF~keDL~~~l~q~~~~~p~~-~~-~~I~V~~L~~ll~~~d-~~kivFIP 259 (279)
T 4e6z_A 190 LMYPVFYAEN-----LYIQ-K-DGSNIIPLFFDLEDLKEAIEEQKNKALSK-VD-YKIKVLNMVDLIFTED-HKKFGFVP 259 (279)
T ss_dssp CCSEEEEETT-----CCEE-C-SSSEEEEEESSHHHHHHHHHHHHTTCSSC-CC-CCEEEEEHHHHHTCSC-CTTEEEEC
T ss_pred CCccEEEEee-----EEEe-e-CCeEEEeeEecHHHHHHHHHHhhhcCCCC-CC-CceEEEhHHHHHhhCC-cCeEEEEC
Confidence 5799999853 3333 3 46778889999999999999999999974 34 6899999988886433 23689999
Q ss_pred CHHHHHHHHHHHHHcCC
Q 028640 91 ESTQVKNALREMEKAGF 107 (206)
Q Consensus 91 ~~~qv~~A~~l~~~~g~ 107 (206)
+.+.+++++++. .|.
T Consensus 260 s~eSlefi~~l~--~g~ 274 (279)
T 4e6z_A 260 STQSVKYLDKLN--IGT 274 (279)
T ss_dssp CHHHHHHHHHHH--HSC
T ss_pred CHHHHHHHHHHh--cCC
Confidence 999999999983 454
No 5
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=85.16 E-value=4.2 Score=29.63 Aligned_cols=125 Identities=12% Similarity=0.111 Sum_probs=72.0
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhh-h----c
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQ-L----K 80 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~-l----~ 80 (206)
.+|-|.++|.+|..+-...-. ++.+.++|+ ++.. ...+.++.+..++ .|++|..|+.+.--+ + .
T Consensus 8 ~~p~f~l~~~~G~~~~l~~~~-gk~vll~F~a~~C~~C~~~-~~~l~~l~~~~~~---~~~~vv~v~~d~~~~~~~~~~~ 82 (152)
T 2lrn_A 8 VAPAITGIDLKGNSVSLNDFK-GKYVLVDFWFAGCSWCRKE-TPYLLKTYNAFKD---KGFTIYGVSTDRREEDWKKAIE 82 (152)
T ss_dssp ECCCCEEECSSSCEEESGGGT-TSEEEEEEECTTCTTHHHH-HHHHHHHHHHHTT---TTEEEEEEECCSCHHHHHHHHH
T ss_pred cCCCceeEcCCCCEEeHHHcC-CCEEEEEEECCCChhHHHH-HHHHHHHHHHhcc---CCeEEEEEEccCCHHHHHHHHH
Confidence 378899999999988777654 455555555 2222 2233444333222 248999998874211 1 2
Q ss_pred cCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecceeEeeCCeeEeeeeecHHHHHHHHHHHhhcc
Q 028640 81 VNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQ 153 (206)
Q Consensus 81 ~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~Lti~~~~~~~~PlFF~kedl~~~l~~~~~~~ 153 (206)
..++.|.++.+..... ..+.+.-| ..++|-++ .+.++|+ ++-.+.+.+++++.++++.+..
T Consensus 83 ~~~~~~~~~~d~~~~~--~~~~~~~~-----v~~~P~~~----lid~~G~-i~~~~~~~~~l~~~l~~l~~~~ 143 (152)
T 2lrn_A 83 EDKSYWNQVLLQKDDV--KDVLESYC-----IVGFPHII----LVDPEGK-IVAKELRGDDLYNTVEKFVNGA 143 (152)
T ss_dssp HHTCCSEEEEECHHHH--HHHHHHTT-----CCSSCEEE----EECTTSE-EEEECCCTTHHHHHHHHHHTSS
T ss_pred HhCCCCeEEecccchh--HHHHHHhC-----CCcCCeEE----EECCCCe-EEEeeCCHHHHHHHHHHHHhhc
Confidence 3456667776653221 12222212 34788532 2333443 5555678899999999987764
No 6
>2z0r_A Putative uncharacterized protein TTHA0547; alpha/beta protein, structural genomics, unknown function; 2.30A {Thermus thermophilus}
Probab=82.15 E-value=3.8 Score=29.94 Aligned_cols=50 Identities=30% Similarity=0.359 Sum_probs=40.6
Q ss_pred CcEEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEe
Q 028640 13 VPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPV 71 (206)
Q Consensus 13 VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v 71 (206)
=|.|.+.+..|+.++.... +....+.|.|.+.|++|+... |. . |++|.+.
T Consensus 7 g~wY~L~~~~gEhl~L~~l--g~rlAliwTs~~~A~~f~~~~----p~-~--Gm~V~~l 56 (103)
T 2z0r_A 7 GTWYVLEGDPGEHLVVEAL--GERLSGIWTSRELAEAFLAHH----PH-L--GMRVSAL 56 (103)
T ss_dssp SCEEEEESSTTCCCEEEET--TEEEEEEBSCHHHHHHHHHTS----CS-S--CCEEEEE
T ss_pred CCEEEecCCcCceeEEecc--CCceEEEEechHHHHHHHhhC----Cc-c--ccEEeec
Confidence 4899999999999998875 345666789999999999875 77 2 5888876
No 7
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=80.43 E-value=9.3 Score=27.77 Aligned_cols=129 Identities=14% Similarity=0.200 Sum_probs=69.1
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEecH--HHHHH---HHHHHHhcCccccCCCeEEEEeechhhhhh-----cc
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK--EDAEA---LLHQMKSMDPAMRKEGSRVVPVPLNKVFQL-----KV 81 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~--~DA~~---~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l-----~~ 81 (206)
..|-|.++|.+|+.+-..... ++.+-++|+.. ..-.. .+.++....++ .|+.|..|+.+.--+. +.
T Consensus 13 ~~p~~~l~~~~g~~~~l~~~~-gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~---~~v~~v~v~~d~~~~~~~~~~~~ 88 (165)
T 3or5_A 13 PAPSFSGVTVDGKPFSSASLK-GKAYIVNFFATWCPPCRSEIPDMVQVQKTWAS---RGFTFVGIAVNEQLPNVKNYMKT 88 (165)
T ss_dssp BCCCCEEECTTSCEEEGGGGT-TCEEEEEEECTTSHHHHHHHHHHHHHHHHHTT---TTEEEEEEECSCCHHHHHHHHHH
T ss_pred CCCCceeeCCCCCEechhHcC-CCEEEEEEEcCcCHHHHHHHHHHHHHHHHhcc---CCeEEEEEECCCCHHHHHHHHHH
Confidence 478999999999998777654 45555555521 01222 33344333222 2488988887753221 23
Q ss_pred CCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecceeEeeCCeeE--eeeeecHHHHHHHHHHHhhcc
Q 028640 82 NGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSY--RPVFFRKEDLEKSLRRASSDQ 153 (206)
Q Consensus 82 ~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~Lti~~~~~~~--~PlFF~kedl~~~l~~~~~~~ 153 (206)
.++.|.++-+..++..+..... ..+..++|-++. +.++|+-+ ..=+.+.+++.+.++++.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~P~~~l----id~~G~i~~~~~g~~~~~~l~~~l~~~l~~~ 153 (165)
T 3or5_A 89 QGIIYPVMMATPELIRAFNGYI-----DGGITGIPTSFV----IDASGNVSGVIVGPRSKADFDRIVKMALGAK 153 (165)
T ss_dssp HTCCSCEEECCHHHHHHHHTTS-----TTCSCSSSEEEE----ECTTSBEEEEECSCCCHHHHHHHHHHHHC--
T ss_pred cCCCCceEecCHHHHHHHhhhh-----ccCCCCCCeEEE----ECCCCcEEEEEcCCCCHHHHHHHHHHHHhhh
Confidence 4556666666554333222110 013468885332 22333321 111357899999999887654
No 8
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=70.76 E-value=5.5 Score=34.12 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=53.6
Q ss_pred cCCCcEEEEEcCCCCeEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhc--
Q 028640 10 LAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLK-- 80 (206)
Q Consensus 10 L~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~-- 80 (206)
++-+|=|++.|.+|+.+-.++-.| +.+-++|. +..++..|- +.+. . |+.|..||.|....++
T Consensus 1 ~ak~p~F~l~~~~G~~~~Lsd~~G-k~vvl~F~p~~~tp~C~~e~~~~~----~~~~---~-~~~v~gis~D~~~~~~~f 71 (322)
T 4eo3_A 1 MARVKHFELLTDEGKTFTHVDLYG-KYTILFFFPKAGTSGSTREAVEFS----RENF---E-KAQVVGISRDSVEALKRF 71 (322)
T ss_dssp -CBCCCCEEEETTSCEEEGGGTTT-SEEEEEECSSTTSHHHHHHHHHHH----HSCC---T-TEEEEEEESCCHHHHHHH
T ss_pred CCCCCCcEEECCCcCEEeHHHhCC-CeEEEEEECCCCCCCCHHHHHHHH----HHhh---C-CCEEEEEeCCCHHHHHHH
Confidence 356899999999999998887754 55555654 566666553 2222 2 4899999999887663
Q ss_pred --cCCeeEEEecCHH
Q 028640 81 --VNGVAFRLIPEST 93 (206)
Q Consensus 81 --~~~~~f~~vP~~~ 93 (206)
..++.|.++.|+.
T Consensus 72 ~~~~~l~fp~l~D~~ 86 (322)
T 4eo3_A 72 KEKNDLKVTLLSDPE 86 (322)
T ss_dssp HHHHTCCSEEEECTT
T ss_pred HHhhCCceEEEEcCc
Confidence 5678899988853
No 9
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=70.35 E-value=4.4 Score=29.45 Aligned_cols=124 Identities=18% Similarity=0.199 Sum_probs=68.6
Q ss_pred CCcEEEEEcCCCCeEEEe--ccCCCceEEEEEe--------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhh-h-
Q 028640 12 GVPVYALSNCNEEFVLVS--GAKTGKSLGLMCF--------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQ-L- 79 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~--~~~~~~~v~~fF~--------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~-l- 79 (206)
..|-|.++|.+|..+-.+ .-. |+.+.++|+ ++.... .|.++.+... ...|+.|..|+++.--+ +
T Consensus 10 ~~p~f~l~~~~g~~~~l~~~~~~-gk~vll~F~a~~C~~v~C~~~~~-~l~~l~~~~~--~~~~~~~v~v~~d~~~~~~~ 85 (150)
T 3fw2_A 10 YAPFFSLPNAKGEKITRSSDAFK-QKSLLINFWASWNDSISQKQSNS-ELREIYKKYK--KNKYIGMLGISLDVDKQQWK 85 (150)
T ss_dssp BCCCCCEEBTTCCEECTTSTTTT-TSEEEEEEECTTCCCHHHHHHHH-HHHHHHHHHT--TCSSEEEEEEECCSCHHHHH
T ss_pred cCCccEeECCCCCEEecchhhhC-CCEEEEEEEeCCCCchHHHHHHH-HHHHHHHHhc--cCCCeEEEEEEcCCCHHHHH
Confidence 478899999999988766 543 455555544 333332 3333333210 22258999998885321 1
Q ss_pred ---ccCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecceeEeeCCeeEeeeeecHHHHHHHHHHHhh
Q 028640 80 ---KVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASS 151 (206)
Q Consensus 80 ---~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~Lti~~~~~~~~PlFF~kedl~~~l~~~~~ 151 (206)
+..++.|.++.+..... ..+.+.-| ..++|-++ .+.++|+ ++-.+.+.+++++.++++.+
T Consensus 86 ~~~~~~~~~~~~~~d~~~~~--~~~~~~~~-----v~~~P~~~----lid~~G~-i~~~~~~~~~l~~~l~~ll~ 148 (150)
T 3fw2_A 86 DAIKRDTLDWEQVCDFGGLN--SEVAKQYS-----IYKIPANI----LLSSDGK-ILAKNLRGEELKKKIENIVE 148 (150)
T ss_dssp HHHHHTTCCSEEECCSCGGG--CHHHHHTT-----CCSSSEEE----EECTTSB-EEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCceEEEcCcccc--hHHHHHcC-----CCccCeEE----EECCCCE-EEEccCCHHHHHHHHHHHHh
Confidence 34566677766642110 01111111 24778432 3334443 44455599999999988764
No 10
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=67.06 E-value=20 Score=26.58 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=49.3
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe----cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh----ccCC
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF----KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KVNG 83 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~----~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l----~~~~ 83 (206)
..|-|.++|.+|+.+-.+.-.| +.+-++|+ ++ -....+..+.+...++ .+ ++|..|+.+..-.+ +..+
T Consensus 26 ~~P~f~l~~~~G~~~~l~~~~g-k~vvl~f~~~~~C~-~C~~~~~~l~~~~~~~-~~-v~vv~Is~d~~~~~~~~~~~~~ 101 (171)
T 2yzh_A 26 RAPEAVVVTKDLQEKIVGGAKD-VVQVIITVPSLDTP-VCETETKKFNEIMAGM-EG-VDVTVVSMDLPFAQKRFCESFN 101 (171)
T ss_dssp BCCCEEEEETTSCEEEESSCCS-SEEEEEECSCTTSH-HHHHHHHHHHHHTTTC-TT-EEEEEEESSCHHHHHHHHHHTT
T ss_pred cCCceEEECCCCCEeeHHHhCC-CeEEEEEECCCCCC-chHHHHHHHHHHHHHc-CC-ceEEEEeCCCHHHHHHHHHHcC
Confidence 4789999999999988876654 44444544 22 2334445554444445 44 99999998865444 2445
Q ss_pred e-eEEEecC
Q 028640 84 V-AFRLIPE 91 (206)
Q Consensus 84 ~-~f~~vP~ 91 (206)
+ .|.++.+
T Consensus 102 ~~~~~~l~D 110 (171)
T 2yzh_A 102 IQNVTVASD 110 (171)
T ss_dssp CCSSEEEEC
T ss_pred CCCeEEeec
Confidence 6 6777777
No 11
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=64.82 E-value=16 Score=26.55 Aligned_cols=79 Identities=19% Similarity=0.364 Sum_probs=49.1
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe----cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh----ccCC
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF----KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KVNG 83 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~----~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l----~~~~ 83 (206)
.+|-|.++|.+|..+-...-.|.+.+-++|+ +. .....+..+.+...++...|+.|..|+.+..-.+ +..+
T Consensus 14 ~~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~-~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 92 (160)
T 1xvw_A 14 TAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTG-ICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSG 92 (160)
T ss_dssp BCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSS-HHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHT
T ss_pred CCCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCC-chHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcC
Confidence 4788999999999887776654425555555 22 2344444454444444433599999998765433 2345
Q ss_pred eeEEEecC
Q 028640 84 VAFRLIPE 91 (206)
Q Consensus 84 ~~f~~vP~ 91 (206)
+.|.++.+
T Consensus 93 ~~~~~~~d 100 (160)
T 1xvw_A 93 FTFPLLSD 100 (160)
T ss_dssp CCSCEEEC
T ss_pred CCceEEec
Confidence 56666666
No 12
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=63.76 E-value=9.4 Score=28.22 Aligned_cols=77 Identities=14% Similarity=0.186 Sum_probs=47.9
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh----c
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----K 80 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l----~ 80 (206)
..|-|.++|.+|..+-...-.|...+.++|+ +......+ .++.. +....|+.|..|+.+..-.+ +
T Consensus 7 ~~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l-~~~~~---~~~~~~v~vv~vs~d~~~~~~~~~~ 82 (161)
T 3drn_A 7 KAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAF-RDNWD---LLKDYDVVVIGVSSDDINSHKRFKE 82 (161)
T ss_dssp BCCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHH-HHTHH---HHHTTCEEEEEEESCCHHHHHHHHH
T ss_pred cCCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHH-HHHHH---HHHHcCCEEEEEeCCCHHHHHHHHH
Confidence 4789999999999987776544431555555 34433332 22222 22223589999999866544 2
Q ss_pred cCCeeEEEecCH
Q 028640 81 VNGVAFRLIPES 92 (206)
Q Consensus 81 ~~~~~f~~vP~~ 92 (206)
..++.|.++.+.
T Consensus 83 ~~~~~~~~~~d~ 94 (161)
T 3drn_A 83 KYKLPFILVSDP 94 (161)
T ss_dssp HTTCCSEEEECT
T ss_pred HhCCCceEEECC
Confidence 456778887763
No 13
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=58.67 E-value=42 Score=23.23 Aligned_cols=58 Identities=17% Similarity=0.274 Sum_probs=37.1
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEec------HHHHHHHHHHHHhcCccccCCCeEEEEeechh
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFK------KEDAEALLHQMKSMDPAMRKEGSRVVPVPLNK 75 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~------~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~ 75 (206)
..|-|.+++.+|..+-... . ++.+.++|++ +. ....+.++.+..++ .++.|..|+.+.
T Consensus 14 ~~p~~~l~~~~g~~~~l~~-~-gk~~ll~f~~~~C~~C~~-~~~~l~~~~~~~~~---~~~~~v~v~~d~ 77 (145)
T 3erw_A 14 VPAVFLMKTIEGEDISIPN-K-GQKTILHFWTSWCPPCKK-ELPQFQSFYDAHPS---DSVKLVTVNLVN 77 (145)
T ss_dssp SCCEEEEECTTSCEEEESC-T-TSEEEEEEECSSCHHHHH-HHHHHHHHHHHCCC---SSEEEEEEECGG
T ss_pred cCCCceeecCCCCEEeHHH-C-CCEEEEEEECCCCHHHHH-HHHHHHHHHHHcCC---CCEEEEEEEccC
Confidence 5899999999999887776 4 4555555552 22 22344455444432 248888888764
No 14
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=58.23 E-value=8.3 Score=27.34 Aligned_cols=43 Identities=9% Similarity=0.215 Sum_probs=30.5
Q ss_pred CCCcEEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHH
Q 028640 11 AGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMK 55 (206)
Q Consensus 11 ~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk 55 (206)
.++|.+++-|.+|..+-... |+.....-+++.++..++|+++.
T Consensus 90 ~~~Pt~~~~d~~G~~~~~~~--g~~~~~~~~~~~~~l~~~l~~l~ 132 (133)
T 3fk8_A 90 DGIPAVVVVNSDGKVRYTTK--GGELANARKMSDQGIYDFFAKIT 132 (133)
T ss_dssp GCSSEEEEECTTSCEEEECC--SCTTTTGGGSCHHHHHHHHHHHH
T ss_pred CccceEEEECCCCCEEEEec--CCcccccccCCHHHHHHHHHHhc
Confidence 57999999999998765543 22222222478999999999875
No 15
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=57.11 E-value=5.7 Score=30.10 Aligned_cols=77 Identities=22% Similarity=0.377 Sum_probs=48.6
Q ss_pred CCcEEEEEcCCCCeEEEecc--CCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhc--
Q 028640 12 GVPVYALSNCNEEFVLVSGA--KTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLK-- 80 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~--~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~-- 80 (206)
..|=|++.|.+|+.+-.++- + |+.+-++|+ +..+ +..+.+...+..+.|+.|..|+.+....++
T Consensus 10 ~aPdF~l~~~~G~~v~Lsd~~~~-Gk~vvl~f~~~~~cp~C~~e----~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~ 84 (164)
T 4gqc_A 10 KAPDFTLPNQDFEPVNLYEVLKR-GRPAVLIFFPAAFSPVCTKE----LCTFRDKMAQLEKANAEVLAISVDSPWCLKKF 84 (164)
T ss_dssp BCCCCEEEBTTSCEEEHHHHHHT-SSCEEEEECSCTTCCEECSS----CEESCCCGGGGGGSSSEEEEEESSCHHHHHHH
T ss_pred CCcCcEeECCCCCEEEHHHHhcC-CCEEEEEEeCCCCCCCcccc----hhhhhhhHHHhhccCceEEEecCCCHHHHHHH
Confidence 47999999999999876653 3 344444444 2222 122223333444446899999988877662
Q ss_pred --cCCeeEEEecCHH
Q 028640 81 --VNGVAFRLIPEST 93 (206)
Q Consensus 81 --~~~~~f~~vP~~~ 93 (206)
..++.|.++.|+.
T Consensus 85 ~~~~~~~fp~l~D~~ 99 (164)
T 4gqc_A 85 KDENRLAFNLLSDYN 99 (164)
T ss_dssp HHHTTCCSEEEECTT
T ss_pred HHhcCcccceeecCc
Confidence 5678888887763
No 16
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=55.89 E-value=34 Score=25.22 Aligned_cols=74 Identities=14% Similarity=0.074 Sum_probs=48.4
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh----c
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----K 80 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l----~ 80 (206)
..|-|.++|.+|+.+-.+.-.| +.+-++|+ +..++..+- ++..+. . |++|..|+.+....+ +
T Consensus 22 ~~P~f~l~~~~G~~v~l~~~~g-k~vvl~f~~~~~c~~C~~e~~~l~-~~~~~~----~-~v~vv~Is~d~~~~~~~~~~ 94 (165)
T 1q98_A 22 IVENFILVGNDLADVALNDFAS-KRKVLNIFPSIDTGVCATSVRKFN-QQAAKL----S-NTIVLCISADLPFAQARFCG 94 (165)
T ss_dssp BCCCCEEECTTSCEEEGGGGTT-SEEEEEECSCSCSSCCCHHHHHHH-HHHHHS----T-TEEEEEEESSCHHHHTTCTT
T ss_pred CCCCeEEECCCCCEEehHHhCC-CeEEEEEECCCCCCccHHHHHHHH-HHHHHc----C-CCEEEEEeCCCHHHHHHHHH
Confidence 4789999999999987776644 44444443 344444433 333322 2 499999999876555 2
Q ss_pred cCCe-eEEEecCH
Q 028640 81 VNGV-AFRLIPES 92 (206)
Q Consensus 81 ~~~~-~f~~vP~~ 92 (206)
..++ .|.++-+.
T Consensus 95 ~~~~~~~~~l~D~ 107 (165)
T 1q98_A 95 AEGIENAKTVSTF 107 (165)
T ss_dssp TTTCTTEEEEECT
T ss_pred HcCCCceEEeecc
Confidence 4567 68888875
No 17
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=55.51 E-value=18 Score=26.75 Aligned_cols=77 Identities=9% Similarity=0.092 Sum_probs=47.3
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe-c--HHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh----ccCCe
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-K--KEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KVNGV 84 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-~--~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l----~~~~~ 84 (206)
..|=|.++|.+|+.+-.+.-.| +.+-++|+ + -.-....+..+.+...+ . |+.|..|+.+....+ +..++
T Consensus 25 ~aP~f~l~~~~G~~~~l~~~~G-k~vvl~f~~~~~c~~C~~~~~~l~~~~~~--~-~~~vv~is~d~~~~~~~~~~~~~~ 100 (166)
T 3p7x_A 25 FAPDFTVLDNDLNQVTLADYAG-KKKLISVVPSIDTGVCDQQTRKFNSDASK--E-EGIVLTISADLPFAQKRWCASAGL 100 (166)
T ss_dssp BCCCCEEECTTSCEEEGGGGTT-SCEEEEECSCTTSHHHHHHHHHHHHHSCT--T-TSEEEEEESSCHHHHHHHHHHHTC
T ss_pred CCCCeEEEcCCCCEEeHHHhCC-CcEEEEEECCCCCCccHHHHHHHHHHhhc--C-CCEEEEEECCCHHHHHHHHHHcCC
Confidence 4788999999999987776654 44444444 1 11122222333322222 2 489999999876655 24566
Q ss_pred -eEEEecCH
Q 028640 85 -AFRLIPES 92 (206)
Q Consensus 85 -~f~~vP~~ 92 (206)
.|.++-|.
T Consensus 101 ~~~~~l~D~ 109 (166)
T 3p7x_A 101 DNVITLSDH 109 (166)
T ss_dssp SSCEEEECT
T ss_pred CceEEccCC
Confidence 68888776
No 18
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=53.35 E-value=11 Score=28.63 Aligned_cols=77 Identities=14% Similarity=0.279 Sum_probs=47.7
Q ss_pred CCcEEEEE-cCCCCeEEEecc-CCCceEEEEE---e---cHH-HHHHHHHHHHhcCccccCCCe-EEEEeechhhhhh--
Q 028640 12 GVPVYALS-NCNEEFVLVSGA-KTGKSLGLMC---F---KKE-DAEALLHQMKSMDPAMRKEGS-RVVPVPLNKVFQL-- 79 (206)
Q Consensus 12 ~VPVF~vt-n~~g~~~l~~~~-~~~~~v~~fF---~---~~~-DA~~~l~~lk~~~p~~~~~~~-kV~~v~L~~vy~l-- 79 (206)
..|-|.+. |.+|+.+-.+.- .|...+-.|| + +.. ++-.+.+.. .++...|+ +|..|+.+....+
T Consensus 8 ~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~----~~~~~~gv~~vv~Is~d~~~~~~~ 83 (167)
T 2wfc_A 8 KLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQA----AAIHGKGVDIIACMAVNDSFVMDA 83 (167)
T ss_dssp BCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTH----HHHHHTTCCEEEEEESSCHHHHHH
T ss_pred cCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHH----HHHHHCCCCEEEEEeCCCHHHHHH
Confidence 47999999 999998877664 4444444443 1 344 444443322 22222258 9999999876654
Q ss_pred --ccCCee--EEEecCH
Q 028640 80 --KVNGVA--FRLIPES 92 (206)
Q Consensus 80 --~~~~~~--f~~vP~~ 92 (206)
+..++. |.++.|.
T Consensus 84 ~~~~~~~~~~fp~l~D~ 100 (167)
T 2wfc_A 84 WGKAHGADDKVQMLADP 100 (167)
T ss_dssp HHHHTTCTTTSEEEECT
T ss_pred HHHhcCCCcceEEEECC
Confidence 245565 8888775
No 19
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=53.31 E-value=36 Score=26.39 Aligned_cols=74 Identities=14% Similarity=0.083 Sum_probs=50.3
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh----c
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----K 80 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l----~ 80 (206)
..|=|.++|.+|+.+-.+.-.| +.+-++|+ +..+...+ +++.... . |+.|..|+.+....+ +
T Consensus 57 ~aPdf~l~d~~G~~v~L~d~~G-k~vvl~F~~~~~c~~C~~e~~~l-~~l~~~~----~-~v~vv~Is~D~~~~~~~~~~ 129 (200)
T 3zrd_A 57 KAKDFTLVAKDLSDVALSSFAG-KRKVLNIFPSIDTGVCAASVRKF-NQLAGEL----E-NTVVLCISSDLPFAQSRFCG 129 (200)
T ss_dssp BCCCCEEECTTSCEEEGGGGTT-SEEEEEECSCCCCSCCCHHHHHH-HHHHHTS----T-TEEEEEEESSCHHHHTTCTT
T ss_pred CCCCeEEECCCCCEEcHHHhCC-CcEEEEEECCCCCchhHHHHHHH-HHHHHHh----C-CCEEEEEECCCHHHHHHHHH
Confidence 4788999999999988776654 44444444 34544443 3333332 2 499999999987665 2
Q ss_pred cCCe-eEEEecCH
Q 028640 81 VNGV-AFRLIPES 92 (206)
Q Consensus 81 ~~~~-~f~~vP~~ 92 (206)
..++ .|.++.|.
T Consensus 130 ~~~~~~f~~l~D~ 142 (200)
T 3zrd_A 130 AEGLSNVITLSTL 142 (200)
T ss_dssp TTTCTTEEEEETT
T ss_pred HcCCCCceEEecC
Confidence 4578 89999886
No 20
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=52.89 E-value=14 Score=27.87 Aligned_cols=60 Identities=8% Similarity=0.094 Sum_probs=35.1
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeech
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLN 74 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~ 74 (206)
.+|=|+++|.+|+.+-.+.-.| +.+-++|+ ++.....+ .++.+.-.+-+.. +++..|++|
T Consensus 11 ~~PdF~L~d~~G~~v~l~d~~G-k~vll~F~~t~Cp~~Cp~~~~~l-~~l~~~~~~~~~~-v~~v~isvD 77 (170)
T 4hde_A 11 DLETFQFTNQDGKPFGTKDLKG-KVWVADFMFTNCQTVCPPMTANM-AKLQKMAKEEKLD-VQFVSFSVD 77 (170)
T ss_dssp CCCCCEEECTTSCEEEHHHHTT-SCEEEEEECTTCSSSHHHHHHHH-HHHHHHHHHTTCC-CEEEEEESC
T ss_pred cCCCcEEECCCCCEEeHHHhCC-CEEEEEEECCCCCCcccHHHHHH-HHHHHhhhccccc-ceeEeeecC
Confidence 4788999999999998777654 55444443 33333322 2222211111223 788888876
No 21
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=52.08 E-value=4.4 Score=30.37 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=48.1
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh----c
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----K 80 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l----~ 80 (206)
..|=|++.|.+|+.+-.+.-.| +.+-++|+ +..+.. .+.+...+....|+.|..|+.+....+ +
T Consensus 9 ~aPdF~l~~~~G~~~~l~d~~G-k~vvl~f~~~~~c~~C~~e~~----~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~ 83 (157)
T 4g2e_A 9 LAPDFELPDTELKKVKLSALKG-KVVVLAFYPAAFTQVCTKEMC----TFRDSMAKFNQVNAVVLGISVDPPFSNKAFKE 83 (157)
T ss_dssp BCCCCEEEBTTSCEEEGGGGTT-SCEEEEECSCTTCCC----------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHH
T ss_pred CCcCeEeECCCCCEEeHHHHCC-CeEEEEecCCCCCCccccchh----hcccccccccccCceEeeecccchhHHHHHHH
Confidence 4789999999999988777654 44444444 233332 333323333333689999998887665 3
Q ss_pred cCCeeEEEecCHH
Q 028640 81 VNGVAFRLIPEST 93 (206)
Q Consensus 81 ~~~~~f~~vP~~~ 93 (206)
..++.|.++.|..
T Consensus 84 ~~~~~~p~l~D~~ 96 (157)
T 4g2e_A 84 HNKLNFTILSDYN 96 (157)
T ss_dssp HTTCCSEEEECTT
T ss_pred HcCCcEEEEEcCC
Confidence 5678888887753
No 22
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=48.43 E-value=35 Score=25.07 Aligned_cols=77 Identities=9% Similarity=0.098 Sum_probs=48.4
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEec---HHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh----ccCCe
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFK---KEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KVNGV 84 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~---~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l----~~~~~ 84 (206)
..|=|.++|.+|+.+-.+.-.| +.+-++|+. -.-....+..+.+...+. . |++|..|+.+..-.+ +..++
T Consensus 21 ~~P~f~l~~~~G~~v~l~~~~g-k~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~-~v~vv~is~d~~~~~~~~~~~~~~ 97 (163)
T 1psq_A 21 KALDFSLTTTDLSKKSLADFDG-KKKVLSVVPSIDTGICSTQTRRFNEELAGL-D-NTVVLTVSMDLPFAQKRWCGAEGL 97 (163)
T ss_dssp BCCCCEEECTTSCEEEGGGGTT-SEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T-TEEEEEEESSCHHHHHHHHHHHTC
T ss_pred CCCCEEEEcCCCcEeeHHHhCC-CEEEEEEECCCCCCccHHHHHHHHHHHHHc-C-CcEEEEEECCCHHHHHHHHHhcCC
Confidence 4788999999999987776644 445445442 112233344444434444 3 499999999876544 23456
Q ss_pred -eEEEecC
Q 028640 85 -AFRLIPE 91 (206)
Q Consensus 85 -~f~~vP~ 91 (206)
.|.++.+
T Consensus 98 ~~~~~l~D 105 (163)
T 1psq_A 98 DNAIMLSD 105 (163)
T ss_dssp TTSEEEEC
T ss_pred CCcEEecC
Confidence 7777777
No 23
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=47.61 E-value=6.5 Score=28.95 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=46.7
Q ss_pred CCcEEE--EEcCCCCeEEEeccCCCceEEEEEec---HHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh----ccC
Q 028640 12 GVPVYA--LSNCNEEFVLVSGAKTGKSLGLMCFK---KEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KVN 82 (206)
Q Consensus 12 ~VPVF~--vtn~~g~~~l~~~~~~~~~v~~fF~~---~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l----~~~ 82 (206)
.+|-|. ++|.+|+.+-.+.-.| +.+-++|+. -......+..+.+...++...|++|..|+.+..-.+ +..
T Consensus 12 ~~P~f~~~l~~~~G~~~~l~~~~g-k~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~ 90 (163)
T 3gkn_A 12 PAATFDLPLSLSGGTQTTLRAHAG-HWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQ 90 (163)
T ss_dssp CGGGGGCCEECSTTCEECSGGGTT-SCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred cCCCccccccCCCCCEEEHHHhCC-CcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHh
Confidence 478899 9999999887776544 444444442 112333333333322233333589999999855444 234
Q ss_pred CeeEEEecCH
Q 028640 83 GVAFRLIPES 92 (206)
Q Consensus 83 ~~~f~~vP~~ 92 (206)
++.|.++.+.
T Consensus 91 ~~~~~~~~d~ 100 (163)
T 3gkn_A 91 GFAFPLVSDG 100 (163)
T ss_dssp CCSSCEEECT
T ss_pred CCCceEEECC
Confidence 5666666653
No 24
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=46.85 E-value=70 Score=22.19 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=67.4
Q ss_pred CCcEEEEEcCCCCeEEEe--ccCCCceEEEEEe------cHHHHHHHHHHHHhcC-ccccCCCeEEEEeechhhh---h-
Q 028640 12 GVPVYALSNCNEEFVLVS--GAKTGKSLGLMCF------KKEDAEALLHQMKSMD-PAMRKEGSRVVPVPLNKVF---Q- 78 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~--~~~~~~~v~~fF~------~~~DA~~~l~~lk~~~-p~~~~~~~kV~~v~L~~vy---~- 78 (206)
..|-|.+++.+|..+-.. ... ++.+.++|+ ++.... .+.++.+.. ++ .|+.|..|+.+.-- +
T Consensus 10 ~~p~~~l~~~~g~~~~l~~~~~~-gk~vll~F~~~~C~~C~~~~~-~l~~l~~~~~~~---~~~~~v~v~~d~~~~~~~~ 84 (148)
T 3fkf_A 10 SAPYFSLPNEKGEKLSRSAERFR-NRYLLLNFWASWCDPQPEANA-ELKRLNKEYKKN---KNFAMLGISLDIDREAWET 84 (148)
T ss_dssp BCCCCCEEBTTSCEECTTSTTTT-TSEEEEEEECGGGCCCHHHHH-HHHHHHHHTTTC---TTEEEEEEECCSCHHHHHH
T ss_pred cCCCeEeeCCCCCEEeccccccC-CcEEEEEEECCCCHHHHHHhH-HHHHHHHHhcCC---CCeEEEEEECCCCHHHHHH
Confidence 478999999999988666 443 455555544 344333 344444443 22 24889988877532 1
Q ss_pred h-ccCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecceeEeeCCeeEeeeeecHHHHHHHHHHHhh
Q 028640 79 L-KVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASS 151 (206)
Q Consensus 79 l-~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~Lti~~~~~~~~PlFF~kedl~~~l~~~~~ 151 (206)
. +..++.|.++-+...-. ..+.+.- +..++|-++ .+.++|+ ++-.+.+.+++.+.++++.+
T Consensus 85 ~~~~~~~~~~~~~d~~~~~--~~~~~~~-----~v~~~P~~~----lid~~G~-i~~~~~~~~~l~~~l~~ll~ 146 (148)
T 3fkf_A 85 AIKKDTLSWDQVCDFTGLS--SETAKQY-----AILTLPTNI----LLSPTGK-ILARDIQGEALTGKLKELLK 146 (148)
T ss_dssp HHHHTTCCSEEECCSCGGG--CHHHHHT-----TCCSSSEEE----EECTTSB-EEEESCCHHHHHHHHHHHC-
T ss_pred HHHHcCCCceEEEccCCcc--hHHHHhc-----CCCCcCEEE----EECCCCe-EEEecCCHHHHHHHHHHHHc
Confidence 1 23455566555542110 1111111 134788542 2333443 44444599999999988754
No 25
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=46.78 E-value=41 Score=22.16 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhcCcc
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~~p~ 60 (206)
|=.-|-+..++|+.++ +.+ .|-++.+|+.-++.+|+.-|.
T Consensus 11 G~frfrLka~NGevI~-sSe--------~Y~sk~~a~~gI~sVk~na~~ 50 (64)
T 3bid_A 11 GEYRWRLKAANHEIIA-QGE--------GYTSKQNCQHAVDLLKSTTAA 50 (64)
T ss_dssp SCEEEEEECTTSCEEE-ECC--------CBSCHHHHHHHHHHHHTCCTT
T ss_pred CCEEEEEEeCCCCEEE-ECC--------CcCCHHHHHHHHHHHHHhCCC
Confidence 4455777777777776 322 268999999999999988664
No 26
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=44.96 E-value=3.3 Score=31.73 Aligned_cols=79 Identities=15% Similarity=0.145 Sum_probs=46.0
Q ss_pred CcEEEEEcCCCCeEEEeccCCCceEEEEEec---HHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh----ccCCee
Q 028640 13 VPVYALSNCNEEFVLVSGAKTGKSLGLMCFK---KEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KVNGVA 85 (206)
Q Consensus 13 VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~---~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l----~~~~~~ 85 (206)
+|=|.++|.+|+.+-.+.-.| +.+-++|+. -.-....+..+.+...++...|+.|..|+.+....+ +..++.
T Consensus 31 aP~f~l~~~~G~~v~l~d~~G-k~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~ 109 (179)
T 3ixr_A 31 LLNHPLMLSGSTCKTLSDYTN-QWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFT 109 (179)
T ss_dssp HHHCCEEEGGGEEECGGGGTT-SEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCC
T ss_pred CCCeeEECCCCCEEeHHHHCC-CCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCc
Confidence 688999999999887666544 444445441 111222222222222222233589999999876554 245677
Q ss_pred EEEecCH
Q 028640 86 FRLIPES 92 (206)
Q Consensus 86 f~~vP~~ 92 (206)
|.++.+.
T Consensus 110 f~~l~D~ 116 (179)
T 3ixr_A 110 FPLVSDS 116 (179)
T ss_dssp SCEEECT
T ss_pred eEEEECC
Confidence 7777663
No 27
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=43.99 E-value=24 Score=26.51 Aligned_cols=59 Identities=14% Similarity=0.144 Sum_probs=36.9
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe------cHHHHHHHHHHHHhcCccccCCCeEEEEeechh
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNK 75 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~ 75 (206)
.+|=|.++|.+|+.+-.+.-. |+.+-++|. ++.+... |+++.++.. ..|+.|..|+.+.
T Consensus 17 ~~p~f~l~d~~G~~v~l~~~~-Gk~vlv~F~atwC~~C~~~~p~-l~~l~~~~~---~~~~~vi~is~d~ 81 (180)
T 3kij_A 17 SFYAFEVKDAKGRTVSLEKYK-GKVSLVVNVASDCQLTDRNYLG-LKELHKEFG---PSHFSVLAFPCNQ 81 (180)
T ss_dssp CGGGCEEEBTTSCEEEGGGGT-TSEEEEEEECSSSTTHHHHHHH-HHHHHHHHT---TTSEEEEEEECCC
T ss_pred cccceEEecCCCCEecHHHcC-CCEEEEEEEecCCCCcHHHHHH-HHHHHHHhc---cCCeEEEEEECCc
Confidence 578999999999998777654 456555554 4444333 334433322 2258888887653
No 28
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=43.08 E-value=13 Score=28.62 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=48.9
Q ss_pred CCcEEEEE-cCCCCeEEEec-cCCCceEEEEE------ecH-HHHHHHHHHHHhcCccccCCCeEEEE-eechhhhhh--
Q 028640 12 GVPVYALS-NCNEEFVLVSG-AKTGKSLGLMC------FKK-EDAEALLHQMKSMDPAMRKEGSRVVP-VPLNKVFQL-- 79 (206)
Q Consensus 12 ~VPVF~vt-n~~g~~~l~~~-~~~~~~v~~fF------~~~-~DA~~~l~~lk~~~p~~~~~~~kV~~-v~L~~vy~l-- 79 (206)
..|-|++. +.+|+.+-.+. -.|+..+-+|| .+. +++-.+.+.. .+....|+.|.. ++.+....+
T Consensus 20 ~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~----~~~~~~gv~vv~~iS~D~~~~~~~ 95 (173)
T 3mng_A 20 AIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQA----EALKAKGVQVVACLSVNDAFVTGE 95 (173)
T ss_dssp BCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTH----HHHHTTTCCEEEEEESSCHHHHHH
T ss_pred CCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHH----HHHHhCCCEEEEEEcCCCHHHHHH
Confidence 47899999 99999887776 34444444443 244 3555443332 222222588885 999987766
Q ss_pred --ccCCee--EEEecCHH
Q 028640 80 --KVNGVA--FRLIPEST 93 (206)
Q Consensus 80 --~~~~~~--f~~vP~~~ 93 (206)
+..++. |.++.|..
T Consensus 96 f~~~~~~~~~fp~l~D~~ 113 (173)
T 3mng_A 96 WGRAHKAEGKVRLLADPT 113 (173)
T ss_dssp HHHHTTCTTTCEEEECTT
T ss_pred HHHHhCCCCceEEEECCC
Confidence 245565 88998864
No 29
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=39.29 E-value=62 Score=22.86 Aligned_cols=122 Identities=16% Similarity=0.243 Sum_probs=61.7
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEec------HHHHHHHHHHHHhcCccccCCCeEEEEeechhh--hhh----
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFK------KEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKV--FQL---- 79 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~------~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~v--y~l---- 79 (206)
.+|-|.++|.+|+.+-..... ++.+.++|++ +.. ...+.++.+..++ .+++|..|+.+.- -.+
T Consensus 7 ~~p~~~l~~~~g~~~~l~~~~-gk~vll~f~~~~C~~C~~~-~~~l~~~~~~~~~---~~~~~v~v~~d~~~~~~~~~~~ 81 (154)
T 3kcm_A 7 PAPDFTLNTLNGEVVKLSDLK-GQVVIVNFWATWCPPCREE-IPSMMRLNAAMAG---KPFRMLCVSIDEGGKVAVEEFF 81 (154)
T ss_dssp BCCCCEEECTTSCEEEGGGGT-TSEEEEEEECTTCHHHHHH-HHHHHHHHHHTTT---SSEEEEEEECCTTHHHHHHHHH
T ss_pred CCCCeEEEcCCCCEEehhhcC-CCEEEEEEECCCCHHHHHH-HHHHHHHHHHhcc---CCeEEEEEEcCCcchHHHHHHH
Confidence 478899999999988777654 4555555552 222 2334444444433 2488888887752 111
Q ss_pred ccCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCce-eeeecceeEeeCCeeE----eeeeecHHHHHHHHHHHhhcc
Q 028640 80 KVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVP-VFQSRSLVLRSQNKSY----RPVFFRKEDLEKSLRRASSDQ 153 (206)
Q Consensus 80 ~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVP-vF~~~~Lti~~~~~~~----~PlFF~kedl~~~l~~~~~~~ 153 (206)
+..++.|.++-+... .+.+.- +..++| +|++ .++|+-+ ...-++.+++...++++....
T Consensus 82 ~~~~~~~~~~~d~~~-----~~~~~~-----~v~~~P~~~li-----d~~G~i~~~~~g~~~~~~~~l~~~l~~l~~~~ 145 (154)
T 3kcm_A 82 RKTGFTLPVLLDADK-----RVGKLY-----GTTGVPETFVI-----DRHGVILKKVVGAMEWDHPEVIAFLNNELSKA 145 (154)
T ss_dssp HHHCCCCCEEECTTC-----HHHHHH-----TCCSBCEEEEE-----CTTSBEEEEEESCCCTTSHHHHHHHHTC----
T ss_pred HHcCCCeeEEecCch-----HHHHHh-----CCCCCCeEEEE-----CCCCcEEEEEcCCCccccHHHHHHHHHHHHHh
Confidence 122333444433221 111111 134788 4443 2333311 111246778888888876665
No 30
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=36.43 E-value=43 Score=23.69 Aligned_cols=120 Identities=20% Similarity=0.202 Sum_probs=62.2
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh-----c
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL-----K 80 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l-----~ 80 (206)
.+|-|.+++ +|..+-..... ++.+.++|+ ++.. ...+.++.+..++ .|++|..|+++.--+. .
T Consensus 8 ~~P~f~l~~-~g~~~~l~~~~-gk~vll~f~~~~C~~C~~~-~~~l~~l~~~~~~---~~~~~v~v~~d~~~~~~~~~~~ 81 (152)
T 3gl3_A 8 KAPDFALPG-KTGVVKLSDKT-GSVVYLDFWASWCGPCRQS-FPWMNQMQAKYKA---KGFQVVAVNLDAKTGDAMKFLA 81 (152)
T ss_dssp BCCCCEEEB-SSSEEEGGGGT-TSEEEEEEECTTCTHHHHH-HHHHHHHHHHHGG---GTEEEEEEECCSSHHHHHHHHH
T ss_pred cCCceEeeC-CCCeEeHHHhC-CCEEEEEEECCcCHHHHHH-HHHHHHHHHHhhc---CCeEEEEEECCCCHHHHHHHHH
Confidence 479999999 88887666654 455555555 2222 2234444443332 2488988887743211 2
Q ss_pred cCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecceeEeeCCeeEeeee-----ecHHHHHHHHHHHhhc
Q 028640 81 VNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSYRPVF-----FRKEDLEKSLRRASSD 152 (206)
Q Consensus 81 ~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~Lti~~~~~~~~PlF-----F~kedl~~~l~~~~~~ 152 (206)
..++.|.++.+... .+.+.- +..++|-++ .+.++|+- +-.+ .+.++|+..+++....
T Consensus 82 ~~~~~~~~~~d~~~-----~~~~~~-----~v~~~P~~~----lid~~G~i-~~~~~g~~~~~~~~l~~~i~~~~~~ 143 (152)
T 3gl3_A 82 QVPAEFTVAFDPKG-----QTPRLY-----GVKGMPTSF----LIDRNGKV-LLQHVGFRPADKEALEQQILAALGG 143 (152)
T ss_dssp HSCCCSEEEECTTC-----HHHHHT-----TCCSSSEEE----EECTTSBE-EEEEESCCTTTHHHHHHHHHHHTC-
T ss_pred HcCCCCceeECCcc-----hhHHHc-----CCCCCCeEE----EECCCCCE-EEEEccCCCcCHHHHHHHHHHHHcc
Confidence 33445555544321 111111 235788532 23233331 1111 3557888888887554
No 31
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=35.18 E-value=31 Score=25.21 Aligned_cols=77 Identities=12% Similarity=0.142 Sum_probs=46.2
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEecH---HHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh----ccCCe
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK---EDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KVNGV 84 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~---~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l----~~~~~ 84 (206)
.+|-|.++|.+|+.+-.+.-.| +.+-++|+.- .-..+.+..+++...+. . |++|..|+.+..-.+ +..++
T Consensus 23 ~~p~f~l~~~~G~~~~l~~~~g-k~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~-~~~vv~is~d~~~~~~~~~~~~~~ 99 (167)
T 2jsy_A 23 QAPDFTVLTNSLEEKSLADMKG-KVTIISVIPSIDTGVCDAQTRRFNEEAAKL-G-DVNVYTISADLPFAQARWCGANGI 99 (167)
T ss_dssp CCCCCEEEBTTCCEEEHHHHTT-SCEEEEECSCSTTSHHHHTHHHHHHHHHHH-S-SCEEEEEECSSGGGTSCCGGGSSC
T ss_pred cCCceEEECCCCCEeeHHHhCC-CeEEEEEecCCCCCchHHHHHHHHHHHHHc-C-CCEEEEEECCCHHHHHHHHHhcCC
Confidence 4789999999999887766544 4444444421 12333333333322223 3 489999999865444 24456
Q ss_pred -eEEEecC
Q 028640 85 -AFRLIPE 91 (206)
Q Consensus 85 -~f~~vP~ 91 (206)
.|.++.+
T Consensus 100 ~~~~~~~d 107 (167)
T 2jsy_A 100 DKVETLSD 107 (167)
T ss_dssp TTEEEEEG
T ss_pred CCceEeeC
Confidence 7787776
No 32
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=35.03 E-value=79 Score=24.63 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=38.5
Q ss_pred EecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhccCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCce
Q 028640 41 CFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVP 116 (206)
Q Consensus 41 F~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVP 116 (206)
-++.+||.+.++.|..++ +.+ -|++..++-.--+||.. ++..|+.+|..+|.......|.=
T Consensus 8 ~L~~~da~~i~~~L~~~g-------I~~-------~y~~~~~g~~~I~Vp~~-~~~~ar~~La~~GLP~~~~~g~e 68 (171)
T 1yj7_A 8 GLTEKEANQMQALLLSND-------VNV-------SKEMDKSGNMTLSVAAA-DFVRAITILNNNGFPKKKFADIE 68 (171)
T ss_dssp EECHHHHHHHHHHHHHTT-------CCC-------EEEECTTSCEEEEEEGG-GHHHHHHHHHHTTCSCCCCCCHH
T ss_pred CCCHHHHHHHHHHHHHcC-------CCC-------ceEECCCCCEEEEeCHH-HHHHHHHHHHHcCCCCCCCCCHH
Confidence 479999999999998764 110 01222122111266655 88899999888887655555555
No 33
>3g74_A Protein of unknown function; APC21008.1, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; 2.43A {Eubacterium ventriosum atcc 27560}
Probab=34.85 E-value=16 Score=26.20 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=26.4
Q ss_pred CHHHHHHhcCCCcEEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhcCcc
Q 028640 2 SAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60 (206)
Q Consensus 2 ~~~~I~ekL~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~~p~ 60 (206)
+..++.++|...|+|.++..++.-++++ +-..++.+++..|+
T Consensus 34 ~d~~~~~klk~l~i~~~~~~d~~r~Vis-----------------vm~II~~I~~~~P~ 75 (100)
T 3g74_A 34 KNKNITNRLKSMKLLEDTTKGKKRYIVS-----------------IMKIIEMADQTFQN 75 (100)
T ss_dssp SSHHHHHHHHTCEEEECC----CEEEEE-----------------HHHHHHHHHHHCSS
T ss_pred CCHHHHHHhhCcEeeEcCCCCCCEEEEE-----------------HHHHHHHHHHHCCC
Confidence 3578999999999999987665444433 34455566666664
No 34
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=34.60 E-value=55 Score=22.83 Aligned_cols=123 Identities=8% Similarity=-0.013 Sum_probs=60.9
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEec---HHHHHHHHHHHHh---cCccccCCCeEEEEeechhhhhh-----c
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFK---KEDAEALLHQMKS---MDPAMRKEGSRVVPVPLNKVFQL-----K 80 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~---~~DA~~~l~~lk~---~~p~~~~~~~kV~~v~L~~vy~l-----~ 80 (206)
..|-|.++|.+|+.+-.+.-. |+.+.++|+. .. -.+.+..+.+ -.......|+.|..|+++.--+. +
T Consensus 6 ~~p~f~l~~~~g~~~~l~~~~-gk~vll~F~a~~C~~-C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~ 83 (142)
T 3ewl_A 6 KAADFTYVTVHGDNSRMSRLK-AQYTMLFFYDPDCSN-CRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAV 83 (142)
T ss_dssp BCCCCEEECTTCCEEEGGGCC-CSEEEEEECCSSCHH-HHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHT
T ss_pred cCCCCEEECCCCCEEEhhhcC-CCEEEEEEECCCCcc-HHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHH
Confidence 478899999999998777654 4555555552 21 2222222211 11111112488988887732111 2
Q ss_pred cCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecceeEeeCCeeEeeeeecHHHHHHHHHHH
Q 028640 81 VNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRA 149 (206)
Q Consensus 81 ~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~Lti~~~~~~~~PlFF~kedl~~~l~~~ 149 (206)
..++.|.++-+...--. . ...+ +..++|-++ .+.++|+ ++--..+.+++++.+++.
T Consensus 84 ~~~~~~~~~~d~~~~~~-----~--~~~~-~v~~~P~~~----lid~~G~-i~~~~~~~~~l~~~l~~~ 139 (142)
T 3ewl_A 84 YMPQGWIVGWNKAGDIR-----T--RQLY-DIRATPTIY----LLDGRKR-VILKDTSMEQLIDYLATQ 139 (142)
T ss_dssp TSCTTCEEEECTTCHHH-----H--TTCS-CCCSSSEEE----EECTTCB-EEECSCCHHHHHHHHHC-
T ss_pred HcCCCcceeeCCccchh-----h--HHHc-CCCCCCeEE----EECCCCC-EEecCCCHHHHHHHHHHH
Confidence 34455555554432110 0 0111 235788332 2223333 222346788888887654
No 35
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=34.02 E-value=37 Score=24.55 Aligned_cols=58 Identities=16% Similarity=0.243 Sum_probs=35.8
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe------cHHHHHHHHHHHHhcCccccCCCeEEEEeech
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLN 74 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~ 74 (206)
.+|=|.++|.+|..+-.+.-. |+.+-++|+ ++.... .|+++.+...+ .|++|..|+.+
T Consensus 10 ~~p~f~l~~~~G~~~~l~~~~-gk~vlv~f~a~~C~~C~~~~~-~l~~l~~~~~~---~~~~vv~v~~d 73 (169)
T 2v1m_A 10 SIYEFTVKDINGVDVSLEKYR-GHVCLIVNVACKCGATDKNYR-QLQEMHTRLVG---KGLRILAFPCN 73 (169)
T ss_dssp SGGGCEEEBTTSCEEEGGGGT-TSEEEEEEECSSSTTHHHHHH-HHHHHHHHHGG---GTEEEEEEECC
T ss_pred ccccceeecCCCCCccHHHcC-CCEEEEEEeeccCCchHHHHH-HHHHHHHHhhc---CCeEEEEEECC
Confidence 578999999999998777654 455555544 333333 23333332222 24899999875
No 36
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=33.77 E-value=7.8 Score=29.50 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCCCeEEEeccCCCceEEE-----EEecHHHHHHHHHHHHhc
Q 028640 11 AGVPVYALSNCNEEFVLVSGAKTGKSLGL-----MCFKKEDAEALLHQMKSM 57 (206)
Q Consensus 11 ~~VPVF~vtn~~g~~~l~~~~~~~~~v~~-----fF~~~~DA~~~l~~lk~~ 57 (206)
.++|.|++-+++|+.+- +.+|. |.+.++++..+|+.|++.
T Consensus 99 ~~~PT~~f~~~~G~~v~-------~~~G~~~~~~~~~~~~~~~~ll~~~~~a 143 (151)
T 3ph9_A 99 QYVPRIMFVDPSLTVRA-------DIAGRYSNRLYTYEPRDLPLLIENMKKA 143 (151)
T ss_dssp CCSSEEEEECTTSCBCT-------TCCCSCTTSTTCCCGGGHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCEEE-------EEeCCcCCcccccchhhHHHHHHHHHHH
Confidence 57999999998987653 22332 335789999999999865
No 37
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=33.53 E-value=69 Score=23.65 Aligned_cols=59 Identities=15% Similarity=0.278 Sum_probs=35.8
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe------cHHHHHHHHHHHHhcCccccCCCeEEEEeechh
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNK 75 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~ 75 (206)
..|-|.++|.+|+.+-...-. |+.+.++|+ ++.... .++++.+. ....|++|..|+.+.
T Consensus 39 ~~p~f~l~~~~G~~~~l~~~~-gk~vll~F~a~~C~~C~~~~~-~l~~l~~~---~~~~~~~vv~v~~d~ 103 (186)
T 1jfu_A 39 KLPDLAFEDADGKPKKLSDFR-GKTLLVNLWATWCVPCRKEMP-ALDELQGK---LSGPNFEVVAINIDT 103 (186)
T ss_dssp BCCCCEEECTTSCEEEGGGGT-TSEEEEEEECTTCHHHHHHHH-HHHHHHHH---HCBTTEEEEEEECCC
T ss_pred cCCCcEeEcCCCCEeeHHHcC-CCEEEEEEEeCCCHhHHHHHH-HHHHHHHH---hccCCcEEEEEECCC
Confidence 478899999999988777654 455555554 222222 23333332 222248999998874
No 38
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=33.49 E-value=38 Score=24.52 Aligned_cols=58 Identities=21% Similarity=0.296 Sum_probs=35.2
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe------cHHHHHHHHHHHHhcCccccCCCeEEEEeech
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLN 74 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~ 74 (206)
..|=|.++|.+|..+-...-. |+.+.++|+ ++..... |+++..+. ...|++|..|+.+
T Consensus 11 ~~p~f~l~~~~g~~~~l~~~~-gk~vll~f~a~~C~~C~~~~~~-l~~l~~~~---~~~~~~vv~vs~d 74 (170)
T 2p5q_A 11 SVHDFTVKDAKENDVDLSIFK-GKVLLIVNVASKCGMTNSNYAE-MNQLYEKY---KDQGLEILAFPCN 74 (170)
T ss_dssp CGGGCEEEBTTSCEEEGGGGT-TSEEEEEEECSSSTTHHHHHHH-HHHHHHHH---GGGTEEEEEEECC
T ss_pred cccceEEEcCCCCEecHHHhC-CCEEEEEEEeccCCccHHHHHH-HHHHHHHh---ccCCEEEEEEECC
Confidence 478899999999988777654 455555554 3333332 23333222 2224889888875
No 39
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=33.02 E-value=1.1e+02 Score=21.51 Aligned_cols=47 Identities=4% Similarity=-0.046 Sum_probs=31.3
Q ss_pred HHHHhc----CCCcEEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhcCcc
Q 028640 5 AIEERL----AGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60 (206)
Q Consensus 5 ~I~ekL----~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~~p~ 60 (206)
++.+++ .++|.+.+.|.+|..+-... | ..+.++..++|+++++.++.
T Consensus 94 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~--g-------~~~~~~l~~~l~~l~~~~~~ 144 (151)
T 3raz_A 94 NFMKTYGNTVGVLPFTVVEAPKCGYRQTIT--G-------EVNEKSLTDAVKLAHSKCRE 144 (151)
T ss_dssp HHHHTTTCCSCCSSEEEEEETTTTEEEECC--S-------CCCHHHHHHHHHHHHTC---
T ss_pred HHHHHhCCccCCCCEEEEECCCCcEEEEEC--C-------CCCHHHHHHHHHHHHHHhhc
Confidence 445554 47999888898887643332 1 24788999999999887654
No 40
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.96 E-value=1.1e+02 Score=20.35 Aligned_cols=48 Identities=27% Similarity=0.398 Sum_probs=28.1
Q ss_pred CCHHHHHHhcCCCcEEEEEcCCCCeEEEeccCCCce--EEEE-EecHHHHHHHHHHHHhc
Q 028640 1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKS--LGLM-CFKKEDAEALLHQMKSM 57 (206)
Q Consensus 1 L~~~~I~ekL~~VPVF~vtn~~g~~~l~~~~~~~~~--v~~f-F~~~~DA~~~l~~lk~~ 57 (206)
.++++|.+.+.++ +...++.....+.. +++. |-+.++|+..++.+...
T Consensus 27 ~t~~~l~~~F~~~---------~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 2fc8_A 27 TTEETLKESFDGS---------VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 77 (102)
T ss_dssp CCHHHHHHTSTTC---------SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHhcCC---------eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 3678888888753 22222322222332 3333 45899999999988543
No 41
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=32.82 E-value=16 Score=28.46 Aligned_cols=78 Identities=12% Similarity=0.091 Sum_probs=47.8
Q ss_pred CCcEEEEEcC--CC-CeEEEec-cCCCceEEEEE------ecHH-HHHHHHHHHHhcCccccCCCeE-EEEeechhhhhh
Q 028640 12 GVPVYALSNC--NE-EFVLVSG-AKTGKSLGLMC------FKKE-DAEALLHQMKSMDPAMRKEGSR-VVPVPLNKVFQL 79 (206)
Q Consensus 12 ~VPVF~vtn~--~g-~~~l~~~-~~~~~~v~~fF------~~~~-DA~~~l~~lk~~~p~~~~~~~k-V~~v~L~~vy~l 79 (206)
..|-|++.+. +| +.+-.+. -.|+..+-+|| .+.. ++-.+.+.. .+....|+. |..|+.+....+
T Consensus 31 ~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~----~~~~~~gv~~vv~Is~d~~~~~ 106 (184)
T 3uma_A 31 KLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENR----DAILARGVDDIAVVAVNDLHVM 106 (184)
T ss_dssp BCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTH----HHHHTTTCCEEEEEESSCHHHH
T ss_pred CCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHH----HHHHHcCCCEEEEEECCCHHHH
Confidence 4788999987 77 6766665 34444555444 1344 444443332 222223588 999999987766
Q ss_pred c----cCCee--EEEecCHH
Q 028640 80 K----VNGVA--FRLIPEST 93 (206)
Q Consensus 80 ~----~~~~~--f~~vP~~~ 93 (206)
+ ..++. |.++.|..
T Consensus 107 ~~f~~~~~~~~~fp~l~D~~ 126 (184)
T 3uma_A 107 GAWATHSGGMGKIHFLSDWN 126 (184)
T ss_dssp HHHHHHHTCTTTSEEEECTT
T ss_pred HHHHHHhCCCCceEEEEcCc
Confidence 2 44565 88888864
No 42
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=32.78 E-value=65 Score=22.75 Aligned_cols=123 Identities=15% Similarity=0.239 Sum_probs=61.2
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEec------HHHHHHHHHHHHhcCccccCCCeEEEEeechhhh----hh-c
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFK------KEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVF----QL-K 80 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~------~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy----~l-~ 80 (206)
..|-|.++|.+|..+-..... ++.+.++|+. +.. ...+.++.+..++ .|++|..|+.+.-- +. +
T Consensus 5 ~~p~~~l~~~~g~~~~l~~~~-gk~vlv~F~~~~C~~C~~~-~~~l~~~~~~~~~---~~v~vv~v~~d~~~~~~~~~~~ 79 (151)
T 2f9s_A 5 DAPNFVLEDTNGKRIELSDLK-GKGVFLNFWGTWCEPCKKE-FPYMANQYKHFKS---QGVEIVAVNVGESKIAVHNFMK 79 (151)
T ss_dssp ECCCCEEECTTCCEEEGGGGT-TSEEEEEEECTTCHHHHHH-HHHHHHHHHHHGG---GTEEEEEEEESCCHHHHHHHHH
T ss_pred cCCcceeEcCCCCEEEHHHcC-CCEEEEEEECCCCHHHHHH-HHHHHHHHHHhcc---CCeEEEEEECCCCHHHHHHHHH
Confidence 368899999999988777654 4555555552 222 2233333333222 24888888775311 00 1
Q ss_pred cCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecceeEeeCCeeE--eeeeecHHHHHHHHHHHhhcc
Q 028640 81 VNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSY--RPVFFRKEDLEKSLRRASSDQ 153 (206)
Q Consensus 81 ~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~Lti~~~~~~~--~PlFF~kedl~~~l~~~~~~~ 153 (206)
..++.|.++.+... .+.+.- +..|+|-++ .+.++|+.+ ..=+.+.++|...++++.+..
T Consensus 80 ~~~~~~~~~~d~~~-----~~~~~~-----~v~~~P~~~----lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~~ 140 (151)
T 2f9s_A 80 SYGVNFPVVLDTDR-----QVLDAY-----DVSPLPTTF----LINPEGKVVKVVTGTMTESMIHDYMNLIKPGE 140 (151)
T ss_dssp HHTCCSCEEEETTS-----HHHHHT-----TCCSSCEEE----EECTTSEEEEEEESCCCHHHHHHHHHHHSCC-
T ss_pred HcCCCceEEECCch-----HHHHhc-----CCCCCCeEE----EECCCCcEEEEEeCCCCHHHHHHHHHHHHhhh
Confidence 22333333333210 111111 235788432 122233211 111348899999999987653
No 43
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=31.54 E-value=41 Score=25.11 Aligned_cols=58 Identities=12% Similarity=0.168 Sum_probs=36.0
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe------cHHHHHHHHHHHHhcCccccCCCeEEEEeech
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLN 74 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~ 74 (206)
.+|-|.++|.+|+.+-...-. |+.+.++|+ ++.... .|+++.+...+ .|++|..|+.+
T Consensus 26 ~~p~f~l~~~~G~~~~l~~~~-gk~vll~F~atwC~~C~~~~~-~l~~l~~~~~~---~~v~vv~vs~d 89 (183)
T 2obi_A 26 SMHEFSAKDIDGHMVNLDKYR-GFVCIVTNVASQCGKTEVNYT-QLVDLHARYAE---CGLRILAFPCN 89 (183)
T ss_dssp SGGGCEEEBTTSCEEEGGGGT-TSEEEEEEECSSSTTHHHHHH-HHHHHHHHHGG---GTEEEEEEECC
T ss_pred cccceEEEcCCCCEeeHHHcC-CCEEEEEEeCCCCCCcHHHHH-HHHHHHHHHhc---CCeEEEEEECC
Confidence 588999999999998777654 455555554 333333 23333332222 24889999875
No 44
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=31.10 E-value=35 Score=26.66 Aligned_cols=127 Identities=14% Similarity=0.160 Sum_probs=64.9
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe---cHHHHHHHHHHHHhcCccccCCCeEEEEeech--------hhhhh-
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF---KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLN--------KVFQL- 79 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~---~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~--------~vy~l- 79 (206)
.+|-|.++|.+|+.+-...-.|...+.++|. +. -....+..+.+...+....|++|..|+.+ ..-.+
T Consensus 37 ~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~-~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~ 115 (218)
T 3u5r_E 37 RAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCP-FVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVG 115 (218)
T ss_dssp BCCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCH-HHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHH
T ss_pred cCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCc-cHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHH
Confidence 4788999999999887766544433554544 22 11222222222222222235899999884 32222
Q ss_pred ---ccCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecceeEeeCCeeE-----------eeeeecHHHHHHH
Q 028640 80 ---KVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSY-----------RPVFFRKEDLEKS 145 (206)
Q Consensus 80 ---~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~Lti~~~~~~~-----------~PlFF~kedl~~~ 145 (206)
+..++.|.++-+... +.++.+ | ..++|-++ .+.++|+-+ .+--.+.++|..+
T Consensus 116 ~~~~~~~~~~~~l~D~~~-~~~~~~----~-----v~~~P~~~----liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~ 181 (218)
T 3u5r_E 116 AEVKAYGYGFPYLKDASQ-SVAKAY----G-----AACTPDFF----LYDRERRLVYHGQFDDARPGNGKDVTGADLRAA 181 (218)
T ss_dssp HHHHHHTCCSCEEECTTC-HHHHHH----T-----CCEESEEE----EECTTCBEEEEECSSSCCTTSCCCCCCHHHHHH
T ss_pred HHHHHhCCCccEEECCcc-HHHHHc----C-----CCCCCeEE----EECCCCcEEEeccccccccccccccCHHHHHHH
Confidence 234555666655321 111111 1 24667332 222333211 0112457899999
Q ss_pred HHHHhhcc
Q 028640 146 LRRASSDQ 153 (206)
Q Consensus 146 l~~~~~~~ 153 (206)
++++...+
T Consensus 182 i~~ll~~~ 189 (218)
T 3u5r_E 182 VDAVLKGK 189 (218)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 99987664
No 45
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=30.97 E-value=1.2e+02 Score=22.38 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=44.7
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh----c
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----K 80 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l----~ 80 (206)
..|-|.++|.+|+.+-...-.| +.+-++|+ ++..+.. |+++... . |++|..|+.+....+ +
T Consensus 23 ~~P~f~l~~~~G~~v~l~~~~g-k~vvl~F~~t~~C~~C~~~~~~-l~~l~~~-----~-~v~vv~Is~D~~~~~~~~~~ 94 (175)
T 1xvq_A 23 PAPAFTLTGGDLGVISSDQFRG-KSVLLNIFPSVDTPVCATSVRT-FDERAAA-----S-GATVLCVSKDLPFAQKRFCG 94 (175)
T ss_dssp BCCCCEEECTTSCEEEGGGGTT-SCEEEEECSCCCSSCCCHHHHH-HHHHHHH-----T-TCEEEEEESSCHHHHTTCC-
T ss_pred cCCCeEEECCCCCEEeHHHcCC-CEEEEEEEeCCCCchHHHHHHH-HHHHHhh-----c-CCEEEEEECCCHHHHHHHHH
Confidence 4788999999999887776544 44444444 2344433 3333333 2 489999999876555 2
Q ss_pred cCCe-eEEEecCHH
Q 028640 81 VNGV-AFRLIPEST 93 (206)
Q Consensus 81 ~~~~-~f~~vP~~~ 93 (206)
..++ .|.++.+..
T Consensus 95 ~~~~~~~~~l~D~~ 108 (175)
T 1xvq_A 95 AEGTENVMPASAFR 108 (175)
T ss_dssp -----CEEEEECTT
T ss_pred HcCCCCceEeeCCH
Confidence 3456 688888754
No 46
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=30.91 E-value=59 Score=22.85 Aligned_cols=64 Identities=5% Similarity=-0.024 Sum_probs=36.1
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEecH--HHHHHHHHHHHh---cCccccCCCeEEEEeechhh
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK--EDAEALLHQMKS---MDPAMRKEGSRVVPVPLNKV 76 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~--~DA~~~l~~lk~---~~p~~~~~~~kV~~v~L~~v 76 (206)
..|-|.+++.+|+.+-.+.-. ++.+.++|+.. ..-...+..+++ -.......|+.|..|+.+.-
T Consensus 10 ~ap~f~l~~~~g~~~~l~~~~-gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~ 78 (142)
T 3eur_A 10 KALNFTYTLDSGVKGTLYQFP-AEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEE 78 (142)
T ss_dssp BCCCCEEEETTSCEEETTTCC-CSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSC
T ss_pred ccCCcEEEcCCCCEeeHHHcC-CCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCC
Confidence 478999999999998766654 46565555421 112222222222 11111112488988888754
No 47
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=30.72 E-value=1e+02 Score=22.02 Aligned_cols=76 Identities=16% Similarity=0.244 Sum_probs=47.6
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEec------HHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh--ccCC
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFK------KEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL--KVNG 83 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~------~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l--~~~~ 83 (206)
..|-|.+++.+|..+-..... ++.+.++|+. +. ....+.++.+..++ .++.+..|+.+..++- +..+
T Consensus 20 ~~p~f~l~~~~g~~~~l~~~~-gk~vll~F~~~~C~~C~~-~~~~l~~~~~~~~~---~~~~~v~v~~d~~~~~~~~~~~ 94 (158)
T 3hdc_A 20 LAPNFKLPTLSGENKSLAQYR-GKIVLVNFWASWCPYCRD-EMPSMDRLVKSFPK---GDLVVLAVNVEKRFPEKYRRAP 94 (158)
T ss_dssp BCCCCEEECTTSCEEESGGGT-TSEEEEEEECTTCHHHHH-HHHHHHHHHHHSST---TSEEEEEEECSSSCCGGGGGCC
T ss_pred cCCCceeEcCCCCEEehHHhC-CCEEEEEEECCcCHHHHH-HHHHHHHHHHHccc---CCeEEEEEeCCHHHHHHHHHcC
Confidence 478999999999998777664 4555555552 22 22334444444332 2489999998884332 3455
Q ss_pred eeEEEecCH
Q 028640 84 VAFRLIPES 92 (206)
Q Consensus 84 ~~f~~vP~~ 92 (206)
+.|.++.+.
T Consensus 95 ~~~~~~~d~ 103 (158)
T 3hdc_A 95 VSFNFLSDA 103 (158)
T ss_dssp CSCEEEECT
T ss_pred CCceEEECc
Confidence 667776664
No 48
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=30.67 E-value=45 Score=27.11 Aligned_cols=123 Identities=11% Similarity=0.172 Sum_probs=70.5
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe-------cH-----HHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KK-----EDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL 79 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~-----~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l 79 (206)
..|-|++.|.+|..+-.+.-.|+..+- +|+ +. .++..| .+. . . |+.|..||.+....+
T Consensus 27 ~APdFtL~d~~G~~vsLsd~~Gk~vVL-~F~ps~~cp~C~~~~~~~El~~~----~~~---~-~-gv~VvgIS~Ds~~~~ 96 (224)
T 3keb_A 27 YLPSFMLVDDQKHDAALESFSHTPKLI-VTLLSVDEDEHAGLLLLRETRRF----LDS---W-P-HLKLIVITVDSPSSL 96 (224)
T ss_dssp BCCCCEEEETTSCEEEGGGGTTCCEEE-EECSCTTCSTTTSHHHHHHHHHH----HTT---C-T-TSEEEEEESSCHHHH
T ss_pred CCCCeEEECCCCCEEeHHHhCCCcEEE-EEEeCCCCCCCCCCccHHHHHHH----HHH---c-C-CCEEEEEECCCHHHH
Confidence 479999999999998777655444444 444 22 333333 222 2 2 489999999988766
Q ss_pred c----cCCe-eEEEecCHH--HHHHHHHHHHHcCCCCCCCCC--ce-eeeecceeEeeCCe-e---Eeeee---ecHHHH
Q 028640 80 K----VNGV-AFRLIPEST--QVKNALREMEKAGFSDDAFAG--VP-VFQSRSLVLRSQNK-S---YRPVF---FRKEDL 142 (206)
Q Consensus 80 ~----~~~~-~f~~vP~~~--qv~~A~~l~~~~g~~~~~f~g--VP-vF~~~~Lti~~~~~-~---~~PlF---F~kedl 142 (206)
+ ..++ .|.++.|.. ++..+..+.... ..+.| .| +|+++ ++|+ + +.+-. -+.+++
T Consensus 97 ~~f~~~~gl~~fplLsD~~~~~vak~yGv~~~~----~~~~G~~~p~tfvID-----~dG~I~~~~~~~~~~~~pd~~ev 167 (224)
T 3keb_A 97 ARARHEHGLPNIALLSTLRGRDFHKRYGVLITE----YPLSGYTSPAIILAD-----AANVVHYSERLANTRDFFDFDAI 167 (224)
T ss_dssp HHHHHHHCCTTCEEEESTTCTTHHHHTTCBCCS----TTSTTCBCCEEEEEC-----TTCBEEEEEECSBTTCCCCHHHH
T ss_pred HHHHHHcCCCCceEEEcCCchHHHHHhCCcccc----ccccCCccCEEEEEc-----CCCEEEEEEecCCCCCCCCHHHH
Confidence 3 4566 699999863 444433322110 11234 33 34443 2222 1 11211 347888
Q ss_pred HHHHHHHhhcc
Q 028640 143 EKSLRRASSDQ 153 (206)
Q Consensus 143 ~~~l~~~~~~~ 153 (206)
.+++..+.++.
T Consensus 168 l~~L~~l~~~~ 178 (224)
T 3keb_A 168 EKLLQEGEQQA 178 (224)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHhhhcc
Confidence 88888876653
No 49
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=30.54 E-value=50 Score=24.57 Aligned_cols=131 Identities=17% Similarity=0.130 Sum_probs=68.1
Q ss_pred CCc-EEEEEcCCCCeEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeechh---hhhh-
Q 028640 12 GVP-VYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNK---VFQL- 79 (206)
Q Consensus 12 ~VP-VF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~---vy~l- 79 (206)
.+| -|.++|.+|+.+-.+.-. |+.+.++|+ +...... |.++.+...+.+. +++|..|+++. .-.+
T Consensus 6 ~~P~~f~l~d~~G~~v~l~~~~-Gk~vll~F~~t~C~~~C~~~~~~-l~~~~~~~~~~~~-~~~vv~is~d~~d~~~~~~ 82 (170)
T 3me7_A 6 YVPGDITLVDSYGNEFQLKNLK-GKPIILSPIYTHCRAACPLITKS-LLKVIPKLGTPGK-DFWVITFTFDPKDTLEDIK 82 (170)
T ss_dssp BCCTTCEEEETTCCEEEGGGGT-TSCEEEEEECTTCCSHHHHHHHH-HHTTHHHHCCBTT-TBEEEEEECCTTCCHHHHH
T ss_pred cCCCCeEEEcCCcCEEchHHhC-CCEEEEEEECCCCCchhHHHHHH-HHHHHHHhhhcCC-ceEEEEEECCCCCCHHHHH
Confidence 478 899999999998777654 455554544 2232222 3333222112123 38999999873 1111
Q ss_pred ---cc---CCeeEEE--ecCHHHHHHHHHHHHHcCCCCC----CCCCce-eeeecceeEeeCCe---eEeeeeecHHHHH
Q 028640 80 ---KV---NGVAFRL--IPESTQVKNALREMEKAGFSDD----AFAGVP-VFQSRSLVLRSQNK---SYRPVFFRKEDLE 143 (206)
Q Consensus 80 ---~~---~~~~f~~--vP~~~qv~~A~~l~~~~g~~~~----~f~gVP-vF~~~~Lti~~~~~---~~~PlFF~kedl~ 143 (206)
+. +...|.| ..+..++....+ .-|..+. .+...| +|+ |.++|+ .+...-++.+++.
T Consensus 83 ~~~~~~~~~~~~w~~l~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~l-----ID~~G~i~~~~~g~~~~~~~i~ 154 (170)
T 3me7_A 83 RFQKEYGIDGKGWKVVKAKTSEDLFKLLD---AIDFRFMTAGNDFIHPNVVVV-----LSPELQIKDYIYGVNYNYLEFV 154 (170)
T ss_dssp HHHHHTTCCSSSEEEEEESSHHHHHHHHH---HTTCCCEEETTEEECCCEEEE-----ECTTSBEEEEEESSSCCHHHHH
T ss_pred HHHHHcCCCCCCeEEEeCCCHHHHHHHHH---HCCeEEecCCCccccCceEEE-----ECCCCeEEEEEeCCCCCHHHHH
Confidence 11 2234443 466666654332 2233211 112234 222 333333 1233446789999
Q ss_pred HHHHHHhhcc
Q 028640 144 KSLRRASSDQ 153 (206)
Q Consensus 144 ~~l~~~~~~~ 153 (206)
++|+++....
T Consensus 155 ~~l~~~~~~~ 164 (170)
T 3me7_A 155 NALRLARGEG 164 (170)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHHhhccc
Confidence 9999987664
No 50
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp}
Probab=30.47 E-value=86 Score=24.36 Aligned_cols=64 Identities=8% Similarity=0.100 Sum_probs=40.2
Q ss_pred EecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhccCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCc-eeee
Q 028640 41 CFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGV-PVFQ 119 (206)
Q Consensus 41 F~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gV-PvF~ 119 (206)
-++.+||.++++.|..++=. +++..= ..++ .--+|| ..++..|+.+|..+|.......|. =+|-
T Consensus 6 ~L~~~da~~i~~~L~~~~I~-----y~~~~~--------~~~g-~~I~Vp-~~~~~~ar~~La~~GLP~~~~~g~~elf~ 70 (170)
T 2y9j_Y 6 GLDQEQANEVIAVLQMHNIE-----ANKIDS--------GKLG-YSITVA-EPDFTAAVYWIKTYQLPPRPRVEIAQMFP 70 (170)
T ss_dssp EECHHHHHHHHHHHHHTTCC-----EEEEEC--------TTSC-EEEEEC-GGGHHHHHHHHHHTTCSCCCCCCTTCCTT
T ss_pred CCCHHHHHHHHHHHHHcCCC-----EEEecC--------CCCC-eEEEEC-HHHHHHHHHHHHHcCCCCCCCCCHHHHhC
Confidence 36999999999999876311 222100 0001 112666 778999999999888865555555 4554
No 51
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=30.31 E-value=36 Score=24.69 Aligned_cols=129 Identities=9% Similarity=0.124 Sum_probs=63.7
Q ss_pred CCCcEEEEEcCCCCeEEEeccCCCceEEEEEecH--HHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh---ccCCee
Q 028640 11 AGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK--EDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL---KVNGVA 85 (206)
Q Consensus 11 ~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~--~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l---~~~~~~ 85 (206)
...|=|.++|.+|..+-...-. |+.+.++|+.. ..-...+..+.+...+....|+.|..|+.+..-+. ...++.
T Consensus 13 ~~~p~f~l~~~~G~~~~l~~~~-gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~ 91 (152)
T 2lrt_A 13 ASIIDIQLKDLKGNTRSLTDLK-GKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLP 91 (152)
T ss_dssp TCSCCCCEEBTTSCEECTTTGG-GSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCS
T ss_pred CCCCCeEEEcCCCCEEeHHHhC-CCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCC
Confidence 3578899999999887665543 45555555421 01222222222211222222589999988754321 012244
Q ss_pred EEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecceeEeeCCeeEeeeeecHHHHHHHHHHHhhc
Q 028640 86 FRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSD 152 (206)
Q Consensus 86 f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~Lti~~~~~~~~PlFF~kedl~~~l~~~~~~ 152 (206)
|.++-+...-.. .+.+.-| ..++|-+ +.+.++|+ ++=.|....+++..+.+....
T Consensus 92 ~~~~~d~~~~~~--~~~~~~~-----v~~~P~~----~lid~~G~-i~~~~~g~~~~e~~~~~~~~~ 146 (152)
T 2lrt_A 92 WVCVRDANGAYS--SYISLYN-----VTNLPSV----FLVNRNNE-LSARGENIKDLDEAIKKLLEG 146 (152)
T ss_dssp SEEEECSSGGGC--HHHHHHT-----CCSCSEE----EEEETTTE-EEEETTTCSCHHHHHHHHHGG
T ss_pred ceEEECCCCcch--HHHHHcC-----cccCceE----EEECCCCe-EEEecCCHHHHHHHHHHHHhc
Confidence 444444322100 0111111 2367732 23444444 555666777788877776554
No 52
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=29.73 E-value=23 Score=27.91 Aligned_cols=81 Identities=9% Similarity=0.128 Sum_probs=45.4
Q ss_pred CCcEEEEE---cCCCCeEEEeccCCCceEEEEEec---HHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhc-----
Q 028640 12 GVPVYALS---NCNEEFVLVSGAKTGKSLGLMCFK---KEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLK----- 80 (206)
Q Consensus 12 ~VPVF~vt---n~~g~~~l~~~~~~~~~v~~fF~~---~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~----- 80 (206)
..|-|.++ |++|..+-.+.-. |+.+.++|+. -.-....+..+.+...+....|+.|..|+.+......
T Consensus 45 ~aP~f~l~~~~d~~G~~v~l~~~~-Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~ 123 (222)
T 3ztl_A 45 PAPEFKGQAVINGEFKEICLKDYR-GKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNL 123 (222)
T ss_dssp ECCCCEEEEEETTEEEEEEGGGGT-TSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHS
T ss_pred CCCCeEEecccCCCCcEEeHHHhC-CCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHH
Confidence 37889998 6677888777664 4555555552 1111222222222222222235999999998754331
Q ss_pred --c----CCeeEEEecCHH
Q 028640 81 --V----NGVAFRLIPEST 93 (206)
Q Consensus 81 --~----~~~~f~~vP~~~ 93 (206)
. .++.|.++.+..
T Consensus 124 ~~~~~~~~~~~~~~l~D~~ 142 (222)
T 3ztl_A 124 DRKSGGLGHMKIPLLADRK 142 (222)
T ss_dssp CGGGTSCCSCSSCEEECSS
T ss_pred hhhhccccccceeEEeCCc
Confidence 1 167777777653
No 53
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=29.42 E-value=47 Score=24.86 Aligned_cols=58 Identities=16% Similarity=0.144 Sum_probs=35.8
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe------cHHHHHHHHHHHHhcCccccCCCeEEEEeech
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLN 74 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~ 74 (206)
.+|=|.++|.+|..+-...-. |+.+.++|+ ++.+... |+++.++..+ .|++|..|+.+
T Consensus 28 ~~p~f~l~~~~G~~~~l~~~~-Gk~vlv~F~atwC~~C~~~~p~-l~~l~~~~~~---~~v~vv~vs~d 91 (181)
T 2p31_A 28 DFYDFKAVNIRGKLVSLEKYR-GSVSLVVNVASECGFTDQHYRA-LQQLQRDLGP---HHFNVLAFPCN 91 (181)
T ss_dssp CGGGCEEEBTTSCEEEGGGGT-TSEEEEEEECSSSTTHHHHHHH-HHHHHHHHGG---GTEEEEEEECC
T ss_pred ccCceEeecCCCCEecHHHcC-CCEEEEEEeccCCCCcHHHHHH-HHHHHHHhhc---CCEEEEEEECc
Confidence 578999999999988777654 455555554 3443333 3333333222 24888888765
No 54
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=28.83 E-value=50 Score=23.28 Aligned_cols=61 Identities=11% Similarity=0.080 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe---cHHHHHHHHHHHHhcCccccCCCeEEEEeechh
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF---KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNK 75 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~---~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~ 75 (206)
..|=|.+ +.+|+.+-.+.-. |+.+.++|. +.. -.+.+..+.+...+....|+.|..|+++.
T Consensus 12 ~~P~f~l-~~~g~~~~l~~~~-gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~vv~vs~d~ 75 (143)
T 4fo5_A 12 LAPRIEF-LGNDAKASFHNQL-GRYTLLNFWAAYDAE-SRARNVQLANEVNKFGPDKIAMCSISMDE 75 (143)
T ss_dssp BCCCCCC------CCCSCCSS-CCEEEEEEECTTCHH-HHHHHHHHHHHHTTSCTTTEEEEEEECCS
T ss_pred cCCceEE-cCCCCEEEHHHhC-CCEEEEEEEcCcCHH-HHHHHHHHHHHHHHhCcCCEEEEEEEccC
Confidence 4788888 7888877666554 455555554 222 34443333332223332358999998873
No 55
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=28.59 E-value=1.1e+02 Score=20.83 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=36.1
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEecH-----HHHHHHHHHHHhcCccccCCCeEEEEeechh
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK-----EDAEALLHQMKSMDPAMRKEGSRVVPVPLNK 75 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~-----~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~ 75 (206)
..|-|.++|.+|+.+-..... ++.+-++|++. ......++++.+..+ + +++..|+.+.
T Consensus 3 ~~p~~~l~~~~g~~~~l~~~~-~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~-~~~~~v~~~~ 65 (136)
T 1lu4_A 3 ERLQFTATTLSGAPFDGASLQ-GKPAVLWFWTPWCPFCNAEAPSLSQVAAANP----A-VTFVGIATRA 65 (136)
T ss_dssp GGGCCEEEBTTSCEEEGGGGT-TSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----T-SEEEEEECSS
T ss_pred CCCCeEeecCCCCeecHHHhC-CCEEEEEEECCcChhHHHHHHHHHHHHHHCC----C-cEEEEEEcCC
Confidence 468899999999988776654 44555555532 122334445544443 3 8888888764
No 56
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=28.58 E-value=49 Score=24.83 Aligned_cols=59 Identities=12% Similarity=0.181 Sum_probs=36.3
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe------cHHHHHHHHHHHHhcCccccCCCeEEEEeechh
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNK 75 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~ 75 (206)
..|=|.++|.+|+.+-.+.-. |+.+-++|. ++.+... |+++.++..+ .|++|..|+.+.
T Consensus 28 ~~p~f~l~~~~G~~v~l~~~~-Gk~vlv~F~atwC~~C~~~~~~-l~~l~~~~~~---~~v~vv~is~d~ 92 (185)
T 2gs3_A 28 SMHEFSAKDIDGHMVNLDKYR-GFVCIVTNVASQGGKTEVNYTQ-LVDLHARYAE---CGLRILAFPCNQ 92 (185)
T ss_dssp CGGGCEEEBTTSCEEEGGGGT-TSEEEEEEECSSSTTHHHHHHH-HHHHHHHHGG---GTEEEEEEECCT
T ss_pred CcCCceeEcCCCCEeeHHHcC-CCEEEEEEecCCCCchHHHHHH-HHHHHHHhhc---CCeEEEEEECcc
Confidence 578899999999998777654 455555544 3343322 3333332222 258999998763
No 57
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=28.25 E-value=29 Score=25.29 Aligned_cols=79 Identities=8% Similarity=0.193 Sum_probs=45.0
Q ss_pred CCcEEEEEcCCCCeEEEeccCCC-ceEEEEEe----cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh----ccC
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTG-KSLGLMCF----KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----KVN 82 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~-~~v~~fF~----~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l----~~~ 82 (206)
..|=|.++|.+|+.+-.+.-.|. +.+-++|+ ++ -....+..+.+...++...| .|..|+.+..-.+ +..
T Consensus 12 ~~P~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~-~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~ 89 (159)
T 2a4v_A 12 PIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTP-GSTRQASGFRDNYQELKEYA-AVFGLSADSVTSQKKFQSKQ 89 (159)
T ss_dssp BCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSH-HHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCC-CHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHh
Confidence 47889999999998876654332 24555554 22 12222222222222333346 8888988865444 244
Q ss_pred CeeEEEecCH
Q 028640 83 GVAFRLIPES 92 (206)
Q Consensus 83 ~~~f~~vP~~ 92 (206)
++.|.++-|.
T Consensus 90 ~~~~~~l~D~ 99 (159)
T 2a4v_A 90 NLPYHLLSDP 99 (159)
T ss_dssp TCSSEEEECT
T ss_pred CCCceEEECC
Confidence 6677777764
No 58
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=26.17 E-value=35 Score=24.57 Aligned_cols=131 Identities=9% Similarity=-0.057 Sum_probs=65.6
Q ss_pred CcEEEEEcCCCCeEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccc-cCCCeEEEEeechhhh----hh-
Q 028640 13 VPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAM-RKEGSRVVPVPLNKVF----QL- 79 (206)
Q Consensus 13 VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~-~~~~~kV~~v~L~~vy----~l- 79 (206)
.|-|.++|.+|+.+-.+.-. |+.+.++|+ ++.... .|+++.+...+. +..+++|..|+.+.-. .+
T Consensus 3 ap~f~l~~~~G~~~~l~~~~-gk~vll~f~~~~C~~~C~~~~~-~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~ 80 (164)
T 2ggt_A 3 GGPFSLTTHTGERKTDKDYL-GQWLLIYFGFTHCPDVCPEELE-KMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIA 80 (164)
T ss_dssp CCCCEEEETTSCEEEGGGGT-TCEEEEEEECTTCSSHHHHHHH-HHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHH
T ss_pred CCCeEEEeCCCCEEeHHHcC-CCEEEEEEEeCCCCchhHHHHH-HHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHH
Confidence 57899999999998777664 455555543 333332 233332221110 1114889999987521 11
Q ss_pred ---ccCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceee-------ee----cceeEeeCCeeE--eeeeecHHHHH
Q 028640 80 ---KVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVF-------QS----RSLVLRSQNKSY--RPVFFRKEDLE 143 (206)
Q Consensus 80 ---~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF-------~~----~~Lti~~~~~~~--~PlFF~kedl~ 143 (206)
+..+..|.+++...+ ....+.+.-| ..++|.- .. ..+.+.++|+-+ ..=..+.+++.
T Consensus 81 ~~~~~~~~~~~~l~~~~d--~~~~~~~~~~-----v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~ 153 (164)
T 2ggt_A 81 NYVKEFSPKLVGLTGTRE--EVDQVARAYR-----VYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIA 153 (164)
T ss_dssp HHHHTTCSSCEEEECCHH--HHHHHHHTTT-----CCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHH
T ss_pred HHHHHcCCCeEEEeCCHH--HHHHHHHhcC-----eEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHH
Confidence 244566777754322 1122322211 2345621 00 122333444322 12235678888
Q ss_pred HHHHHHhhc
Q 028640 144 KSLRRASSD 152 (206)
Q Consensus 144 ~~l~~~~~~ 152 (206)
+.++++.++
T Consensus 154 ~~l~~ll~~ 162 (164)
T 2ggt_A 154 ASIATHMRP 162 (164)
T ss_dssp HHHHHHHGG
T ss_pred HHHHHHHHh
Confidence 888877653
No 59
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=25.56 E-value=65 Score=22.69 Aligned_cols=124 Identities=12% Similarity=0.075 Sum_probs=62.9
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEec------HHHHHHHHHHHHhcCccccCCCeEEEEeechh--h---hhh-
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFK------KEDAEALLHQMKSMDPAMRKEGSRVVPVPLNK--V---FQL- 79 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~------~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~--v---y~l- 79 (206)
.+|-|.++|.+|+.+-..... ++.+.++|+. +. ....+.++.+..++ .|+.|..|+.+. . -+.
T Consensus 7 ~~p~~~l~~~~g~~~~l~~~~-gk~~lv~f~~~~C~~C~~-~~~~l~~l~~~~~~---~~~~vv~v~~~~~~~~~~~~~~ 81 (153)
T 2l5o_A 7 TAPAFSLPDLHGKTVSNADLQ-GKVTLINFWFPSCPGCVS-EMPKIIKTANDYKN---KNFQVLAVAQPIDPIESVRQYV 81 (153)
T ss_dssp TCCSCEEECTTSCEEEHHHHT-TCEEEEEEECTTCTTHHH-HHHHHHHHHHHGGG---TTEEEEEEECTTSCHHHHHHHH
T ss_pred CCCCcEeecCCCCCccHHHhC-CCEEEEEEECCCCccHHH-HHHHHHHHHHHhcc---CCeEEEEEecCCCCHHHHHHHH
Confidence 478999999999987766554 4555555552 22 22234444443332 248888887531 1 111
Q ss_pred ccCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecceeEeeCCeeE--eeeeecHHHHHHHHHHHhhccc
Q 028640 80 KVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSY--RPVFFRKEDLEKSLRRASSDQN 154 (206)
Q Consensus 80 ~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~Lti~~~~~~~--~PlFF~kedl~~~l~~~~~~~~ 154 (206)
+..++.|.+.-+... .+.+.-| ..++|-++. +..+|+-+ ..=..+.+++...++++.+...
T Consensus 82 ~~~~~~~~~~~d~~~-----~~~~~~~-----i~~~P~~~l----id~~G~i~~~~~g~~~~~~l~~~l~~ll~~~~ 144 (153)
T 2l5o_A 82 KDYGLPFTVMYDADK-----AVGQAFG-----TQVYPTSVL----IGKKGEILKTYVGEPDFGKLYQEIDTAWRNSD 144 (153)
T ss_dssp HHTTCCSEEEECSSC-----HHHHHHT-----CCSSSEEEE----ECSSSCCCEEEESSCCHHHHHHHHHHHHHCCS
T ss_pred HHcCCCceEEcCchH-----HHHHHcC-----CCccCeEEE----ECCCCcEEEEEcCCCCHHHHHHHHHHHHHhhh
Confidence 123333443333210 1111111 347785432 22233211 1113578999999998877653
No 60
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=25.40 E-value=52 Score=24.21 Aligned_cols=77 Identities=13% Similarity=0.238 Sum_probs=45.8
Q ss_pred CCcEEEEE--cCCC--CeEEEec-cCCCceEEEEEe-------cH-HHHHHHHHHHHhcCccccCCCeE-EEEeechhhh
Q 028640 12 GVPVYALS--NCNE--EFVLVSG-AKTGKSLGLMCF-------KK-EDAEALLHQMKSMDPAMRKEGSR-VVPVPLNKVF 77 (206)
Q Consensus 12 ~VPVF~vt--n~~g--~~~l~~~-~~~~~~v~~fF~-------~~-~DA~~~l~~lk~~~p~~~~~~~k-V~~v~L~~vy 77 (206)
..|=|+++ |.+| +.+-.+. -.| +.+-++|+ +. .++..+-+.. .++...|++ |..|+.+...
T Consensus 9 ~aP~f~l~~~~~~G~~~~~~l~~~~~g-k~vvl~f~~~~~c~~C~~~e~~~l~~~~----~~~~~~~v~~vv~Is~d~~~ 83 (162)
T 1tp9_A 9 VLPDGKLAYFDEQDQLQEVSVHSLVAG-KKVILFGVPGAFTPTCSLKHVPGFIEKA----GELKSKGVTEILCISVNDPF 83 (162)
T ss_dssp BCCCCEEEEECTTSCEEEEESHHHHTT-SEEEEEEESCTTCHHHHHTHHHHHHHHH----HHHHHTTCCCEEEEESSCHH
T ss_pred CCCCeEEEeecCCCCceeEeHHHHhCC-CcEEEEEeCCCCCCCCCHHHHHHHHHHH----HHHHHCCCCEEEEEECCCHH
Confidence 47888875 8888 7776665 444 44444444 23 4444433322 222222588 9999998766
Q ss_pred hh----ccCCe--eEEEecCHH
Q 028640 78 QL----KVNGV--AFRLIPEST 93 (206)
Q Consensus 78 ~l----~~~~~--~f~~vP~~~ 93 (206)
.+ +..++ .|.++.|..
T Consensus 84 ~~~~~~~~~~~~~~~~~l~D~~ 105 (162)
T 1tp9_A 84 VMKAWAKSYPENKHVKFLADGS 105 (162)
T ss_dssp HHHHHHHTCTTCSSEEEEECTT
T ss_pred HHHHHHHhcCCCCCeEEEECCC
Confidence 55 24456 688888853
No 61
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=25.33 E-value=79 Score=22.18 Aligned_cols=123 Identities=12% Similarity=0.150 Sum_probs=62.7
Q ss_pred CCc-EEEEEcCCCCeEEEeccCCCceEEEEEe------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhh----h-
Q 028640 12 GVP-VYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQ----L- 79 (206)
Q Consensus 12 ~VP-VF~vtn~~g~~~l~~~~~~~~~v~~fF~------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~----l- 79 (206)
..| -|.++|.+|+.+-..... ++.+.++|+ ++.. ...++++.+..++ .|+.|..|+.+.--+ .
T Consensus 8 ~~p~~f~l~~~~g~~~~l~~~~-gk~~lv~f~~~~C~~C~~~-~~~l~~l~~~~~~---~~~~~v~v~~d~~~~~~~~~~ 82 (152)
T 2lja_A 8 PSAASFSYPDINGKTVSLADLK-GKYIYIDVWATWCGPCRGE-LPALKELEEKYAG---KDIHFVSLSCDKNKKAWENMV 82 (152)
T ss_dssp CCSSSCEEEETTTEEEESTTTT-TSEEEEEECCSSCCGGGGT-HHHHHHHHHHSTT---SSEEEEEEECCSCHHHHHHHH
T ss_pred CCCcccEeecCCCCEeeHHHcC-CCEEEEEEECCcCHhHHHH-hHHHHHHHHHhcc---CCeEEEEEEccCcHHHHHHHH
Confidence 468 899999999988766554 455555554 2332 2334455444332 248888887664321 1
Q ss_pred ccCCee-EEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecceeEeeCCeeE--eeeeecHHHHHHHHHHHhhcc
Q 028640 80 KVNGVA-FRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSY--RPVFFRKEDLEKSLRRASSDQ 153 (206)
Q Consensus 80 ~~~~~~-f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~Lti~~~~~~~--~PlFF~kedl~~~l~~~~~~~ 153 (206)
+..++. +.+..+.. ..+.+.- +..|+|-++ .+.++|+-+ ..=+.+.++|.+.++++....
T Consensus 83 ~~~~~~~~~~~~d~~-----~~~~~~~-----~v~~~P~~~----lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~ 145 (152)
T 2lja_A 83 TKDQLKGIQLHMGTD-----RTFMDAY-----LINGIPRFI----LLDRDGKIISANMTRPSDPKTAEKFNELLGLE 145 (152)
T ss_dssp HHHTCCSEEEECSSC-----THHHHHT-----TCCSSCCEE----EECTTSCEEESSCCCTTCHHHHHHHHHHHTCC
T ss_pred HhcCCCCceeecCcc-----hhHHHHc-----CcCCCCEEE----EECCCCeEEEccCCCCCHHHHHHHHHHHhccc
Confidence 111111 12222210 0111111 234788442 223233211 112467889999999987764
No 62
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=24.40 E-value=1.6e+02 Score=19.65 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=35.2
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEecH-----HHHHHHHHHHHhcCccccCCCeEEEEeech
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK-----EDAEALLHQMKSMDPAMRKEGSRVVPVPLN 74 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~-----~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~ 74 (206)
..|-|.+++.+|+.+-..... ++.+.++|++. ......++++.+..+ + +++..|+.+
T Consensus 4 ~~p~~~~~~~~g~~~~l~~~~-~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~----~-~~~~~v~~~ 65 (136)
T 1zzo_A 4 AQLQFSAKTLDGHDFHGESLL-GKPAVLWFWAPWCPTCQGEAPVVGQVAASHP----E-VTFVGVAGL 65 (136)
T ss_dssp GGGCCEEEBTTSCEEEGGGGT-TSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----T-SEEEEEECS
T ss_pred CCCCcccccCCCCEeeHHHhC-CCeEEEEEEcCCChhHHHHHHHHHHHHHHcC----C-eEEEEEeCC
Confidence 468899999999988776654 44455555522 122334445444433 3 788888865
No 63
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=24.14 E-value=1.7e+02 Score=21.63 Aligned_cols=34 Identities=15% Similarity=0.024 Sum_probs=23.1
Q ss_pred CCCCceeeeecceeEeeCCeeEeeeeecHHHHHHHHHHHhhc
Q 028640 111 AFAGVPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSD 152 (206)
Q Consensus 111 ~f~gVPvF~~~~Lti~~~~~~~~PlFF~kedl~~~l~~~~~~ 152 (206)
+..|+|-|++. |+.++.-+ +.+++...++++...
T Consensus 152 gv~gtPt~vin-------g~~~~~g~-~~~~l~~~i~~~~~~ 185 (193)
T 2rem_A 152 RPVGTPTIVVN-------GRYMVTGH-DFEDTLRITDYLVSR 185 (193)
T ss_dssp CCSSSSEEEET-------TTEEECCS-SHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEC-------CEEEecCC-CHHHHHHHHHHHHHH
Confidence 35699998874 33333334 889999888877654
No 64
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=24.05 E-value=89 Score=23.80 Aligned_cols=76 Identities=7% Similarity=-0.139 Sum_probs=42.2
Q ss_pred CcEEEEEcCCCCeEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCc-cccCCCeEEEEeechh----hhhh-
Q 028640 13 VPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDP-AMRKEGSRVVPVPLNK----VFQL- 79 (206)
Q Consensus 13 VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p-~~~~~~~kV~~v~L~~----vy~l- 79 (206)
.|-|.++|.+|..+-.+.-. |+.+-++|. ++..... |+++...-. +.+. +++|..|+.+. .-.+
T Consensus 21 ~p~f~l~d~~G~~v~l~~~~-Gk~vlv~F~at~C~~vC~~~~~~-l~~l~~~~~~~~~~-~v~vv~Is~D~~~d~~~~~~ 97 (200)
T 2b7k_A 21 GGPFHLEDMYGNEFTEKNLL-GKFSIIYFGFSNCPDICPDELDK-LGLWLNTLSSKYGI-TLQPLFITCDPARDSPAVLK 97 (200)
T ss_dssp CCCCEEEETTSCEEEGGGGT-TSCEEEEEECTTCCSHHHHHHHH-HHHHHHHHHHHHCC-CCEEEEEESCTTTCCHHHHH
T ss_pred CCCEEEEcCCCCEEeHHHcC-CCEEEEEEECCCCcchhHHHHHH-HHHHHHHHHHhhCC-ceEEEEEECCCCCCCHHHHH
Confidence 38899999999998877664 444444443 3333322 222221111 1112 48999999883 2222
Q ss_pred ---ccCCeeEEEecC
Q 028640 80 ---KVNGVAFRLIPE 91 (206)
Q Consensus 80 ---~~~~~~f~~vP~ 91 (206)
+..+..|.+++.
T Consensus 98 ~~~~~~~~~~~~l~~ 112 (200)
T 2b7k_A 98 EYLSDFHPSILGLTG 112 (200)
T ss_dssp HHHTTSCTTCEEEEC
T ss_pred HHHHHcCCCceEEeC
Confidence 234556777765
No 65
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=23.81 E-value=2.5e+02 Score=21.55 Aligned_cols=72 Identities=19% Similarity=0.314 Sum_probs=47.2
Q ss_pred CeEEEEeechhhhhh-c----cCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecceeE-----eeCCeeEe-
Q 028640 65 GSRVVPVPLNKVFQL-K----VNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVL-----RSQNKSYR- 133 (206)
Q Consensus 65 ~~kV~~v~L~~vy~l-~----~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~Lti-----~~~~~~~~- 133 (206)
|+++..++.+++.+. + .+.-.|-++.+++.+.. |.. .|+| .+.+.+ ..|.+.+.
T Consensus 57 gvk~~i~sve~ai~~~~~~~~~~~~v~ll~k~p~d~~~---lve---------~Gv~---i~~iNvG~m~~~~gk~~i~~ 121 (165)
T 1vsq_C 57 GVTAHVVDVAKMIRVYNNPKYAGERVMLLFTNPTDVER---LVE---------GGVK---ITSVNVGGMAFRQGKTQVNN 121 (165)
T ss_dssp TCEEEEECHHHHHHHHTCGGGTTCEEEEEESSHHHHHH---HHH---------TTCC---CSEEEEEECCCCTTSEECSS
T ss_pred CCeEEEEEHHHHHHHHhccccCCcEEEEEECCHHHHHH---HHH---------cCCC---CCEEEECCCcCCCCCeEEec
Confidence 599999999999876 2 34578899999876654 432 3555 333443 33344443
Q ss_pred eeeecHHHHHHHHHHHhhc
Q 028640 134 PVFFRKEDLEKSLRRASSD 152 (206)
Q Consensus 134 PlFF~kedl~~~l~~~~~~ 152 (206)
-+|++.||++. +.++...
T Consensus 122 ~v~v~~ed~~~-lk~L~~~ 139 (165)
T 1vsq_C 122 AVSVDEKDIEA-FKKLNAR 139 (165)
T ss_dssp SCEECHHHHHH-HHHHHHT
T ss_pred cEeeCHHHHHH-HHHHHHC
Confidence 48999999875 4454444
No 66
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=23.54 E-value=2.5e+02 Score=21.52 Aligned_cols=72 Identities=22% Similarity=0.335 Sum_probs=47.4
Q ss_pred CeEEEEeechhhhhh-c----cCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecceeE-----eeCCeeEe-
Q 028640 65 GSRVVPVPLNKVFQL-K----VNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVL-----RSQNKSYR- 133 (206)
Q Consensus 65 ~~kV~~v~L~~vy~l-~----~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~Lti-----~~~~~~~~- 133 (206)
|+++..++.+++.+. + .+.-.|-++.+++.+.. |.. .|+| .+.+.+ ..|.+.+.
T Consensus 54 gvk~~i~sve~ai~~~~~~~~~~~~v~ll~k~p~d~~~---lve---------~Gv~---i~~iNvG~m~~~~gk~~i~~ 118 (164)
T 1nrz_A 54 GMKVNVVSLEKAVAVYHNPQYQDETVFYLFTNPHDVLT---MVR---------QGVQ---IATLNIGGMAWRPGKKQLTK 118 (164)
T ss_dssp TCEEEEECHHHHHHHHTCGGGTTCEEEEEESSHHHHHH---HHT---------TTCC---CSEEEEEEBCCCTTCEEEET
T ss_pred CCeEEEEEHHHHHHHHhcccCCCceEEEEECCHHHHHH---HHH---------cCCC---CCEEEECCCcCCCCCeEEec
Confidence 599999999999876 2 34578899999876644 431 3666 333443 33444453
Q ss_pred eeeecHHHHHHHHHHHhhc
Q 028640 134 PVFFRKEDLEKSLRRASSD 152 (206)
Q Consensus 134 PlFF~kedl~~~l~~~~~~ 152 (206)
-+|++.+|++. +.++...
T Consensus 119 ~v~v~~ed~~~-lk~L~~~ 136 (164)
T 1nrz_A 119 AVSLDPQDIQA-FRELDKL 136 (164)
T ss_dssp TEEECHHHHHH-HHHHHHT
T ss_pred cEeeCHHHHHH-HHHHHHC
Confidence 39999999875 4454444
No 67
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=23.31 E-value=62 Score=23.45 Aligned_cols=60 Identities=12% Similarity=0.096 Sum_probs=34.9
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeech
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLN 74 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~ 74 (206)
..|-|.++|.+|..+-.+.-.| +.+.+.|+ ++... ..|.++.+...+.+.. ++|..|+.+
T Consensus 12 ~~p~f~l~~~~G~~~~l~~~~g-k~vll~f~~~~C~~~C~~~~-~~l~~l~~~~~~~~~~-~~vv~is~d 78 (174)
T 1xzo_A 12 EVEPFTFQNQDGKNVSLESLKG-EVWLADFIFTNCETICPPMT-AHMTDLQKKLKAENID-VRIISFSVD 78 (174)
T ss_dssp ECCCCEEECTTSCEEETGGGTT-CCEEEEEECSCCSSCCCSHH-HHHHHHHHHHHHTTCC-CEEEEEESC
T ss_pred ccCCcEEEcCCCCEEehhhcCC-CEEEEEEEcCCCcchhHHHH-HHHHHHHHHhhhcCCc-EEEEEEEeC
Confidence 3788999999999987776544 44444433 22222 2233333222222223 899999987
No 68
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=22.87 E-value=2.3e+02 Score=21.73 Aligned_cols=72 Identities=17% Similarity=0.312 Sum_probs=47.1
Q ss_pred CeEEEEeechhhhhh-c----cCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecceeE-----eeCCeeEe-
Q 028640 65 GSRVVPVPLNKVFQL-K----VNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVL-----RSQNKSYR- 133 (206)
Q Consensus 65 ~~kV~~v~L~~vy~l-~----~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~Lti-----~~~~~~~~- 133 (206)
|+++..++.+++.+. + .+.-.|-++.+++.+.. |.. .|+| .+.+.+ ..|.+.+.
T Consensus 55 gvk~~i~sve~ai~~~~~~~~~~~~v~ll~k~p~d~~~---lve---------~Gv~---i~~iNvG~m~~~~gk~~i~~ 119 (163)
T 1ble_A 55 NVKASAVSVSKMAKAFHSPRYEGVTAMLLFENPSDIVS---LIE---------AGVP---IKTVNVGGMRFENHRRQITK 119 (163)
T ss_dssp TSEEEEECHHHHHHHHHCSTTTTCEEEEEESSSHHHHH---HHT---------TTCC---CCEEEEEEBCCCTTSEECSS
T ss_pred CCeEEEEEHHHHHHHHhcccCCCceEEEEECCHHHHHH---HHH---------cCCC---CCEEEECCCCCCCCCeEEec
Confidence 599999999999876 2 34578889999876544 431 3666 333443 33344443
Q ss_pred eeeecHHHHHHHHHHHhhc
Q 028640 134 PVFFRKEDLEKSLRRASSD 152 (206)
Q Consensus 134 PlFF~kedl~~~l~~~~~~ 152 (206)
-+|++.||++. +.++...
T Consensus 120 ~v~v~~ed~~~-l~~L~~~ 137 (163)
T 1ble_A 120 SVSVTEQDIKA-FETLSDK 137 (163)
T ss_dssp SBEECHHHHHH-HHHHHHT
T ss_pred cEeeCHHHHHH-HHHHHHC
Confidence 48999999875 4454444
No 69
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=22.61 E-value=65 Score=25.15 Aligned_cols=76 Identities=11% Similarity=0.167 Sum_probs=45.4
Q ss_pred CCcEEEEEcC--CC--CeEEEecc-CCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh
Q 028640 12 GVPVYALSNC--NE--EFVLVSGA-KTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL 79 (206)
Q Consensus 12 ~VPVF~vtn~--~g--~~~l~~~~-~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l 79 (206)
..|=|.+.+. +| ..+-.+.- .| +.+.++|+ ++.+... |.++. .+....|++|..|+.+....+
T Consensus 26 ~aP~f~l~~~~~~G~~~~v~l~d~~~g-k~vvl~F~pa~~C~~C~~~~~~-l~~l~---~~~~~~~v~vv~Is~D~~~~~ 100 (213)
T 2i81_A 26 EAPFFKAEAVFGDNSFGEVNLTQFIGK-KYVLLYFYPLDFTFVCPSEIIA-LDKAL---DAFHERNVELLGCSVDSKYTH 100 (213)
T ss_dssp BCCCCEEEEECTTSCEEEEEGGGGTTT-CEEEEEECSCTTSSHHHHHHHH-HHHTH---HHHHHTTEEEEEEESSCHHHH
T ss_pred cCCCeEeeccccCCceeEEeHHHHcCC-CeEEEEEEcCCCCCCCHHHHHH-HHHHH---HHHHHCCCEEEEEeCCCHHHH
Confidence 4788999988 78 66665554 44 55555555 2443333 22222 222222599999999876554
Q ss_pred c----cC-------CeeEEEecCH
Q 028640 80 K----VN-------GVAFRLIPES 92 (206)
Q Consensus 80 ~----~~-------~~~f~~vP~~ 92 (206)
+ .. ++.|.++-|.
T Consensus 101 ~~~~~~~~~~~g~~~~~fp~l~D~ 124 (213)
T 2i81_A 101 LAWKKTPLAKGGIGNIKHTLLSDI 124 (213)
T ss_dssp HHHHSSCGGGTCCCSCSSEEEECT
T ss_pred HHHHHHHHhhCCccCCCceEEECC
Confidence 1 12 6778888774
No 70
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=22.43 E-value=29 Score=26.12 Aligned_cols=127 Identities=12% Similarity=0.096 Sum_probs=66.1
Q ss_pred CCcEEEEEcCCCC----eEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhc
Q 028640 12 GVPVYALSNCNEE----FVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLK 80 (206)
Q Consensus 12 ~VPVF~vtn~~g~----~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~ 80 (206)
..|-|.++|.+|. .+-.+.-. |+.+-++|+ ++..+..+ +++..... ..|++|..|+.+....++
T Consensus 6 ~~P~f~l~~~~g~~~~~~~~l~~~~-gk~vvl~F~~a~~C~~C~~~~~~l-~~~~~~~~---~~~v~vv~vs~d~~~~~~ 80 (187)
T 1we0_A 6 EVQPFRAQAFQSGKDFFEVTEADLK-GKWSIVVFYPADFSFVCPTELEDV-QKEYAELK---KLGVEVYSVSTDTHFVHK 80 (187)
T ss_dssp BCCCCEEEEECSSSCCEEEETTTTS-SSEEEEEECSCTTCSSCTHHHHHH-HHHHHHHH---HTTEEEEEEESSCHHHHH
T ss_pred cCCCeEEeccCCCccceEecHHHHC-CCCEEEEEECCCCCcchHHHHHHH-HHHHHHHH---HcCCEEEEEECCCHHHHH
Confidence 4788999998888 77666554 455555555 34433332 22222211 114899999998754331
Q ss_pred ----cC----CeeEEEecCHHHHHHHHHHHHHcCCCCCCCC-CceeeeecceeEeeCCeeEeeee-------ecHHHHHH
Q 028640 81 ----VN----GVAFRLIPESTQVKNALREMEKAGFSDDAFA-GVPVFQSRSLVLRSQNKSYRPVF-------FRKEDLEK 144 (206)
Q Consensus 81 ----~~----~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~-gVPvF~~~~Lti~~~~~~~~PlF-------F~kedl~~ 144 (206)
.. ++.|.++.+.. - .+.+.-|......+ ++|-+ +.+.++|+ ++=.+ -+.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~d~~-~----~~~~~~~v~~~~~g~~~P~~----~lid~~G~-i~~~~~g~~~~~~~~~~l~~ 150 (187)
T 1we0_A 81 AWHENSPAVGSIEYIMIGDPS-Q----TISRQFDVLNEETGLADRGT----FIIDPDGV-IQAIEINADGIGRDASTLIN 150 (187)
T ss_dssp HHHHSCHHHHTCCSEEEECTT-C----HHHHHTTCEETTTTEECEEE----EEECTTSB-EEEEEEECTTSCCCTTHHHH
T ss_pred HHHHHhccccCCCceEEECCc-h----HHHHHhCCCcCCCCceeeEE----EEECCCCe-EEEEEecCCCCCCCHHHHHH
Confidence 22 57777777742 1 11122222111111 46632 22333333 11111 15788999
Q ss_pred HHHHHhhcc
Q 028640 145 SLRRASSDQ 153 (206)
Q Consensus 145 ~l~~~~~~~ 153 (206)
.++++....
T Consensus 151 ~l~~l~~~~ 159 (187)
T 1we0_A 151 KVKAAQYVR 159 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhh
Confidence 888887644
No 71
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=22.13 E-value=1.3e+02 Score=24.78 Aligned_cols=49 Identities=18% Similarity=0.299 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhcccccCCCCccCcE-EEEeHHHHHHhhhc-CCCCCCceEEEec
Q 028640 139 KEDLEKSLRRASSDQNKLNPAFRMGDI-QVAVFEEIIKGMKE-STTSAWNDVVFIP 192 (206)
Q Consensus 139 kedl~~~l~~~~~~~~~~~p~~~~~~I-~V~~Le~vi~~m~~-~~~~~~~~i~fiP 192 (206)
.++++.+++-+.+.. +.+ +|-| .+++|+++-+.++. .+.....+++++|
T Consensus 296 ~~~~~~~~~l~~~g~--l~~---~~lI~~~~~l~~~~~A~~~l~~~~~~GKvVl~P 346 (346)
T 4a2c_A 296 GQEWETASRLLTERK--LSL---EPLIAHRGSFESFAQAVRDIARNAMPGKVLLIP 346 (346)
T ss_dssp CHHHHHHHHHHHTTC--SCC---GGGEEEEECHHHHHHHHHHHTTSCCCSEEEECC
T ss_pred HHHHHHHHHHHHcCC--CCC---CccEeEEEeHHHHHHHHHHHHcCCCceEEEEEC
Confidence 467777766554332 212 3435 68999999888875 4444467999988
No 72
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=21.92 E-value=87 Score=23.57 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=20.6
Q ss_pred CceEEEEEecHHHHHHHHHHHHhc
Q 028640 34 GKSLGLMCFKKEDAEALLHQMKSM 57 (206)
Q Consensus 34 ~~~v~~fF~~~~DA~~~l~~lk~~ 57 (206)
.+..|+-|-|++||.+|.+.++..
T Consensus 95 ~~~yGL~F~S~~dA~~F~~~~~~A 118 (130)
T 3syx_A 95 DKKFGLTFQSPADARAFDRGIRRA 118 (130)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CeEeecccCCHHHHHHHHHHHHHH
Confidence 467899999999999999888764
No 73
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=21.78 E-value=56 Score=26.32 Aligned_cols=79 Identities=9% Similarity=0.120 Sum_probs=45.6
Q ss_pred CCcEEEEEcCCCCeEEEeccCCCceEEEEEe----cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh----c---
Q 028640 12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF----KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL----K--- 80 (206)
Q Consensus 12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~----~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l----~--- 80 (206)
..|=|.+++.+| .+-.+.-.|++.+.+||+ ++ -....+..+.+..++..+.|++|..|+.+....+ +
T Consensus 8 ~aPdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cp-vC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~ 85 (233)
T 2v2g_A 8 VFPNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTP-VSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVK 85 (233)
T ss_dssp BCCCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCH-HHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHH
T ss_pred CCCCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCC-CcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHH
Confidence 478899999999 554444334434544543 22 1122223333323333333699999999987654 1
Q ss_pred ---cC--CeeEEEecCH
Q 028640 81 ---VN--GVAFRLIPES 92 (206)
Q Consensus 81 ---~~--~~~f~~vP~~ 92 (206)
.. ++.|.++-|.
T Consensus 86 ~~~~~~~~~~fpil~D~ 102 (233)
T 2v2g_A 86 CLSGVKGDMPYPIIADE 102 (233)
T ss_dssp HHHTCCSSCSSCEEECT
T ss_pred HhhCcccCCceEEEECC
Confidence 23 6778888774
No 74
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=21.63 E-value=1.5e+02 Score=21.12 Aligned_cols=130 Identities=12% Similarity=-0.039 Sum_probs=64.5
Q ss_pred cEEEEEcCCCCeEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccc-cCCCeEEEEeechhhh----hh--
Q 028640 14 PVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAM-RKEGSRVVPVPLNKVF----QL-- 79 (206)
Q Consensus 14 PVF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~-~~~~~kV~~v~L~~vy----~l-- 79 (206)
|-|.++|.+|+.+-.+.-. |+.+-++|+ ++.... .|+++.+...+. ...+++|..|+.+... .+
T Consensus 7 p~f~l~~~~G~~~~l~~~~-gk~vll~F~~~~C~~~C~~~~~-~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~ 84 (171)
T 2rli_A 7 GDFHLLDHRGRARCKADFR-GQWVLMYFGFTHCPDICPDELE-KLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMAR 84 (171)
T ss_dssp SCCEEEETTSCEEETTTTT-TSEEEEEEECTTCSSSHHHHHH-HHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHH
T ss_pred CCeEEEeCCCCEEeHHHhC-CCEEEEEEEcCCCCchhHHHHH-HHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHH
Confidence 7899999999988777654 455555543 333332 233333222110 1114899999987321 11
Q ss_pred --ccCCeeEEEecCH-HHHHHHHHHHHHcCCCCCCCCCcee-------eee----cceeEeeCCeeE--eeeeecHHHHH
Q 028640 80 --KVNGVAFRLIPES-TQVKNALREMEKAGFSDDAFAGVPV-------FQS----RSLVLRSQNKSY--RPVFFRKEDLE 143 (206)
Q Consensus 80 --~~~~~~f~~vP~~-~qv~~A~~l~~~~g~~~~~f~gVPv-------F~~----~~Lti~~~~~~~--~PlFF~kedl~ 143 (206)
+..+..|.++.+. .+.. .+.+.-|. .++|. |.. ..+.|.++|+-+ ..=..+.+++.
T Consensus 85 ~~~~~~~~~~~l~~~~~~~~---~~~~~~~v-----~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~ 156 (171)
T 2rli_A 85 YVQDFHPRLLGLTGSTKQVA---QASHSYRV-----YYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQIS 156 (171)
T ss_dssp HHHTTCTTCCEEECCHHHHH---HHHHHSCC-----CCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHH
T ss_pred HHHHcCCCeEEEeCCHHHHH---HHHHHhCe-----EEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHH
Confidence 2344556666543 2222 22222222 23441 000 122233333321 12235788888
Q ss_pred HHHHHHhhcc
Q 028640 144 KSLRRASSDQ 153 (206)
Q Consensus 144 ~~l~~~~~~~ 153 (206)
+.++++.+..
T Consensus 157 ~~l~~ll~~~ 166 (171)
T 2rli_A 157 DSVRRHMAAF 166 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877653
No 75
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=21.13 E-value=79 Score=23.88 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=44.4
Q ss_pred CCcEEEEEcC-CC--CeEEEeccCCCceEEEEEe----cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhc----
Q 028640 12 GVPVYALSNC-NE--EFVLVSGAKTGKSLGLMCF----KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLK---- 80 (206)
Q Consensus 12 ~VPVF~vtn~-~g--~~~l~~~~~~~~~v~~fF~----~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~---- 80 (206)
..|-|.+++. +| ..+-.+.-. |+.+-++|+ +. -....+..+.+...++...|++|..|+.+......
T Consensus 10 ~aP~f~l~~~~~g~~~~v~l~~~~-gk~vvl~F~~a~~C~-~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~ 87 (197)
T 1qmv_A 10 PAPDFKATAVVDGAFKEVKLSDYK-GKYVVLFFYPLDFTF-VAPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWIN 87 (197)
T ss_dssp BCCCCEEEEEETTEEEEEEGGGGT-TSEEEEEECSCTTSS-HHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHT
T ss_pred CCCCeEeEeecCCCccEEEHHHHC-CCeEEEEEECCCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH
Confidence 4788999876 66 666665554 455555655 22 12222233332222333235999999998764431
Q ss_pred c-------CCeeEEEecCH
Q 028640 81 V-------NGVAFRLIPES 92 (206)
Q Consensus 81 ~-------~~~~f~~vP~~ 92 (206)
. .++.|.++-+.
T Consensus 88 ~~~~~~~~~~~~~p~l~D~ 106 (197)
T 1qmv_A 88 TPRKEGGLGPLNIPLLADV 106 (197)
T ss_dssp SCGGGTCCCSCSSCEEECT
T ss_pred HHHhhCCCCCCceEEEECC
Confidence 1 16677777764
No 76
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=20.97 E-value=96 Score=24.43 Aligned_cols=76 Identities=12% Similarity=0.190 Sum_probs=45.9
Q ss_pred CCcEEEEEcC--CC--CeEEEecc-CCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh
Q 028640 12 GVPVYALSNC--NE--EFVLVSGA-KTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL 79 (206)
Q Consensus 12 ~VPVF~vtn~--~g--~~~l~~~~-~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l 79 (206)
..|=|.++|. +| ..+-.+.- .| +.+-++|+ +..+...+ +++.+ ++...|++|..|+.+....+
T Consensus 30 ~aP~F~l~~~~~~G~~~~v~L~d~~~G-k~vvl~F~patwCp~C~~e~p~l-~~l~~---~~~~~~v~vv~Is~D~~~~~ 104 (221)
T 2c0d_A 30 KAYNFTAQGLNKNNEIINVDLSSFIGQ-KYCCLLFYPLNYTFVCPTEIIEF-NKHIK---DFENKNVELLGISVDSVYSH 104 (221)
T ss_dssp BCCCCEEEEECTTSCEEEEEGGGGTTT-CEEEEEECCCCTTTCCHHHHHHH-HHTHH---HHHHTTEEEEEEESSCHHHH
T ss_pred CCCCeEEeccccCCCccEEeHHHHcCC-CeEEEEEEcCCCCCchHHHHHHH-HHHHH---HHHHCCCEEEEEeCCCHHHH
Confidence 4789999998 88 77766655 44 44444444 45554433 22222 22222599999999876544
Q ss_pred ----ccC-------CeeEEEecCH
Q 028640 80 ----KVN-------GVAFRLIPES 92 (206)
Q Consensus 80 ----~~~-------~~~f~~vP~~ 92 (206)
+.. ++.|.++.|.
T Consensus 105 ~~~~~~~~~~~g~~~~~fp~l~D~ 128 (221)
T 2c0d_A 105 LAWKNMPIEKGGIGNVEFTLVSDI 128 (221)
T ss_dssp HHHHHSCGGGTCCCSCSSEEEECT
T ss_pred HHHHHHhhhhcCccCCceEEEECC
Confidence 122 5678888774
No 77
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=20.66 E-value=1.2e+02 Score=22.22 Aligned_cols=31 Identities=10% Similarity=0.058 Sum_probs=22.7
Q ss_pred CCCcEEEEEcC--CCCeEEEeccCCCceEEEEEe
Q 028640 11 AGVPVYALSNC--NEEFVLVSGAKTGKSLGLMCF 42 (206)
Q Consensus 11 ~~VPVF~vtn~--~g~~~l~~~~~~~~~v~~fF~ 42 (206)
...|=|.+++- +|+.+-...-. ++.+-++|+
T Consensus 35 ~~~p~f~l~~~~~~g~~~~l~~~~-gk~vlv~F~ 67 (183)
T 3lwa_A 35 QQLPDIGGDSLMEEGTQINLSDFE-NQVVILNAW 67 (183)
T ss_dssp CCCCCCEEEBSSSTTCEEEGGGGT-TSEEEEEEE
T ss_pred CCCCceeccccccCCcEecHHHhC-CCEEEEEEE
Confidence 35889999999 99998777654 455555555
No 78
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=20.43 E-value=2.5e+02 Score=20.31 Aligned_cols=32 Identities=28% Similarity=0.569 Sum_probs=23.7
Q ss_pred CCCceeeeecceeEeeCCeeEeeeeecHHHHHHHHHHHhh
Q 028640 112 FAGVPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASS 151 (206)
Q Consensus 112 f~gVPvF~~~~Lti~~~~~~~~PlFF~kedl~~~l~~~~~ 151 (206)
..|+|-|++.+ ++++=+.+.+++...++++.+
T Consensus 142 v~gtPt~~i~g--------~~~~G~~~~~~l~~~i~~~l~ 173 (175)
T 3gyk_A 142 FNGTPSFVVED--------ALVPGFVEQSQLQDAVDRARK 173 (175)
T ss_dssp CCSSSEEEETT--------EEECSCCCHHHHHHHHHHHHH
T ss_pred CccCCEEEECC--------EEeeCCCCHHHHHHHHHHHHh
Confidence 46999888743 244456789999999988764
No 79
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=20.22 E-value=3.4e+02 Score=21.74 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=40.4
Q ss_pred ceEEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh-ccCCeeEEEecCHHHHHHHHH
Q 028640 35 KSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL-KVNGVAFRLIPESTQVKNALR 100 (206)
Q Consensus 35 ~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l-~~~~~~f~~vP~~~qv~~A~~ 100 (206)
......|-+.+|++..+.+++.. |+++..= =..++++ +.-|+...++-+.+.|..|..
T Consensus 131 ~i~~~~~~~~ee~~~~i~~l~~~-------G~~vVVG-~~~~~~~A~~~Gl~~vlI~s~eSI~~Ai~ 189 (225)
T 2pju_A 131 RLDQRSYITEEDARGQINELKAN-------GTEAVVG-AGLITDLAEEAGMTGIFIYSAATVRQAFS 189 (225)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHT-------TCCEEEE-SHHHHHHHHHTTSEEEESSCHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHC-------CCCEEEC-CHHHHHHHHHcCCcEEEECCHHHHHHHHH
Confidence 33444567899999999999877 4666433 3344555 567888888888888876554
No 80
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=20.16 E-value=1.8e+02 Score=18.65 Aligned_cols=59 Identities=17% Similarity=0.296 Sum_probs=36.5
Q ss_pred eEEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhccCCeeEEEecCHHHHHHHHHHHHHcCC
Q 028640 36 SLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGF 107 (206)
Q Consensus 36 ~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~~~~~~f~~vP~~~qv~~A~~l~~~~g~ 107 (206)
++|.| =+++.|+.+.++++... . . +.|. .=+..| .+.+-=.++..+.+.++.-++..|.
T Consensus 13 QvGaf-~~~~~A~~~~~~L~~~g--~--~-~~i~--~~~~~y-----RV~vGpf~~~~~A~~~~~~L~~~g~ 71 (79)
T 1x60_A 13 QIGAF-KVKANADSLASNAEAKG--F--D-SIVL--LKDGLY-----KVQIGAFSSKDNADTLAARAKNAGF 71 (79)
T ss_dssp EEEEE-SCHHHHHHHHHHHHHHT--C--C-EEEE--EETTEE-----EEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred EEEEc-CCHHHHHHHHHHHHhCC--C--C-eEEe--cCCcEE-----EEEECCcCCHHHHHHHHHHHHHcCC
Confidence 46655 79999999999998762 1 1 3442 211111 1333334578888888887776554
No 81
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=20.11 E-value=2.3e+02 Score=19.67 Aligned_cols=46 Identities=7% Similarity=0.124 Sum_probs=31.4
Q ss_pred HHHHhc--CCCcEEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhcCcc
Q 028640 5 AIEERL--AGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60 (206)
Q Consensus 5 ~I~ekL--~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~~p~ 60 (206)
++.+++ .++|.+.+-|.+|..+-. .| .++.++-.++++++....+.
T Consensus 83 ~l~~~~~v~~~Pt~~~~~~~G~~~~~--------~G--~~~~~~l~~~l~~~~~~~~~ 130 (136)
T 2l5l_A 83 ELAGAFGIRSIPSILFIPMEGKPEMA--------QG--AMPKASFKKAIDEFLLKKEG 130 (136)
T ss_dssp HHHHHTTCCSSCEEEEECSSSCCEEE--------ES--CCCHHHHHHHHHHHHTSCTT
T ss_pred HHHHHcCCCCCCEEEEECCCCcEEEE--------eC--CCCHHHHHHHHHHHhhccCC
Confidence 455554 479999998888876521 12 25888888999888765443
Done!