Query 028641
Match_columns 206
No_of_seqs 217 out of 1317
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 14:41:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 1.5E-39 3.3E-44 263.4 5.3 151 1-151 1-177 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 8.5E-35 1.8E-39 202.6 3.7 75 2-76 1-75 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 9E-32 1.9E-36 190.0 4.5 78 2-79 1-79 (83)
4 smart00432 MADS MADS domain. 100.0 6.8E-31 1.5E-35 173.2 3.5 59 2-60 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 3.3E-30 7.1E-35 170.0 3.1 59 2-60 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 7.5E-29 1.6E-33 158.4 -1.7 51 9-59 1-51 (51)
7 KOG0015 Regulator of arginine 99.8 1.1E-21 2.3E-26 164.2 1.9 65 2-66 63-127 (338)
8 PF01486 K-box: K-box region; 99.6 2.3E-15 4.9E-20 109.9 9.9 75 84-158 11-85 (100)
9 COG5068 ARG80 Regulator of arg 99.5 5E-15 1.1E-19 129.3 2.2 67 1-67 81-147 (412)
10 PF10584 Proteasome_A_N: Prote 89.8 0.069 1.5E-06 28.3 -0.5 14 43-56 3-16 (23)
11 PRK04098 sec-independent trans 89.8 0.36 7.7E-06 38.0 3.1 82 42-133 14-95 (158)
12 PF06698 DUF1192: Protein of u 87.0 1.5 3.3E-05 28.7 4.3 33 110-142 12-44 (59)
13 PF07106 TBPIP: Tat binding pr 75.9 25 0.00055 27.5 8.4 52 90-142 114-165 (169)
14 KOG4252 GTP-binding protein [S 67.7 63 0.0014 26.4 8.8 33 38-76 90-122 (246)
15 cd00187 TOP4c DNA Topoisomeras 67.3 69 0.0015 29.4 10.3 61 7-73 257-328 (445)
16 smart00787 Spc7 Spc7 kinetocho 66.3 33 0.00072 30.0 7.7 32 114-145 196-227 (312)
17 PRK01919 tatB sec-independent 64.2 41 0.00089 26.8 7.1 27 43-71 15-41 (169)
18 PF08317 Spc7: Spc7 kinetochor 63.8 44 0.00095 29.2 8.1 33 114-146 201-233 (325)
19 PF10211 Ax_dynein_light: Axon 63.4 66 0.0014 25.9 8.4 94 50-156 81-178 (189)
20 PF10491 Nrf1_DNA-bind: NLS-bi 60.0 12 0.00025 30.8 3.4 48 25-72 34-88 (214)
21 KOG4603 TBP-1 interacting prot 59.8 40 0.00086 27.0 6.3 58 85-142 79-139 (201)
22 PHA02592 52 DNA topisomerase I 57.3 1.5E+02 0.0033 27.2 10.5 111 43-158 299-419 (439)
23 KOG0183 20S proteasome, regula 56.0 5.9 0.00013 32.7 1.1 21 41-61 4-26 (249)
24 KOG0184 20S proteasome, regula 55.0 5.9 0.00013 32.9 1.0 25 36-60 3-29 (254)
25 PRK00182 tatB sec-independent 54.4 8.9 0.00019 30.2 1.9 37 34-74 9-45 (160)
26 PF09151 DUF1936: Domain of un 54.4 10 0.00022 21.5 1.6 27 34-60 2-30 (36)
27 PF01502 PRA-CH: Phosphoribosy 53.2 4.8 0.0001 27.7 0.1 38 16-53 17-63 (75)
28 TIGR02976 phageshock_pspB phag 52.5 34 0.00074 23.4 4.3 43 65-107 22-64 (75)
29 COG0139 HisI Phosphoribosyl-AM 50.2 11 0.00023 27.9 1.6 39 16-54 49-96 (111)
30 PF14009 DUF4228: Domain of un 50.0 14 0.00031 28.4 2.4 33 40-73 14-47 (181)
31 PF06667 PspB: Phage shock pro 48.9 44 0.00096 22.9 4.4 43 65-107 22-64 (75)
32 PF07106 TBPIP: Tat binding pr 48.7 1.3E+02 0.0028 23.4 8.8 55 87-145 81-135 (169)
33 PF06005 DUF904: Protein of un 47.7 73 0.0016 21.6 5.3 23 119-141 1-23 (72)
34 PRK01371 sec-independent trans 47.0 22 0.00048 27.3 2.9 22 34-58 8-29 (137)
35 PF09941 DUF2173: Uncharacteri 46.7 15 0.00033 27.0 2.0 27 32-59 3-29 (108)
36 PRK04654 sec-independent trans 45.2 11 0.00023 31.1 1.0 34 34-71 8-41 (214)
37 PF09177 Syntaxin-6_N: Syntaxi 44.2 1.1E+02 0.0024 21.5 6.3 78 61-140 16-95 (97)
38 KOG4311 Histidinol dehydrogena 40.1 1.2E+02 0.0026 26.2 6.5 57 15-71 180-257 (359)
39 COG4575 ElaB Uncharacterized c 40.0 1.5E+02 0.0032 21.7 9.2 71 87-165 10-87 (104)
40 PRK03100 sec-independent trans 39.2 20 0.00044 27.5 1.7 34 34-71 9-42 (136)
41 KOG4637 Adaptor for phosphoino 39.0 30 0.00066 31.0 2.9 42 33-74 367-413 (464)
42 PRK10803 tol-pal system protei 38.9 39 0.00084 28.7 3.5 37 34-71 11-47 (263)
43 PF11629 Mst1_SARAH: C termina 38.4 53 0.0012 20.6 3.1 18 115-132 4-21 (49)
44 COG3883 Uncharacterized protei 37.4 2.6E+02 0.0055 24.0 8.2 33 121-154 79-111 (265)
45 PLN02372 violaxanthin de-epoxi 37.3 3.3E+02 0.0072 25.0 11.5 28 121-148 378-405 (455)
46 PF14282 FlxA: FlxA-like prote 36.5 1.6E+02 0.0035 21.2 9.1 58 85-151 19-76 (106)
47 PF04645 DUF603: Protein of un 36.4 2.2E+02 0.0048 22.8 7.9 67 88-154 101-170 (181)
48 COG4831 Roadblock/LC7 domain [ 36.3 37 0.00081 24.5 2.5 30 30-60 3-32 (109)
49 PF10504 DUF2452: Protein of u 36.0 1.5E+02 0.0032 23.4 6.0 38 120-157 28-68 (159)
50 PF10623 PilI: Plasmid conjuga 35.8 35 0.00075 23.7 2.2 31 42-72 8-41 (83)
51 PLN03128 DNA topoisomerase 2; 34.6 4.8E+02 0.01 27.2 10.9 28 44-73 961-988 (1135)
52 COG3074 Uncharacterized protei 34.3 1.5E+02 0.0032 20.1 5.2 34 119-157 1-34 (79)
53 PF10337 DUF2422: Protein of u 34.3 2.9E+02 0.0062 25.2 8.7 52 86-137 256-308 (459)
54 cd02980 TRX_Fd_family Thioredo 34.0 43 0.00093 22.0 2.5 30 39-69 47-77 (77)
55 PLN03194 putative disease resi 33.6 2.1E+02 0.0045 23.2 6.7 31 38-68 78-108 (187)
56 PRK09458 pspB phage shock prot 33.6 86 0.0019 21.5 3.9 23 85-107 42-64 (75)
57 PRK15422 septal ring assembly 33.1 1.7E+02 0.0036 20.3 5.3 33 119-156 1-33 (79)
58 PTZ00108 DNA topoisomerase 2-l 33.0 4.3E+02 0.0092 28.2 10.3 109 45-157 963-1141(1388)
59 PF14263 DUF4354: Domain of un 32.0 17 0.00036 27.5 0.2 42 11-57 41-82 (124)
60 TIGR02231 conserved hypothetic 30.3 4.5E+02 0.0097 24.4 10.0 29 117-145 122-150 (525)
61 KOG3718 Carnitine O-acyltransf 30.1 97 0.0021 29.0 4.7 29 48-76 14-42 (609)
62 PF11232 Med25: Mediator compl 29.5 66 0.0014 25.2 3.2 23 37-59 109-132 (152)
63 PF06008 Laminin_I: Laminin Do 29.4 3.3E+02 0.0072 22.7 7.8 31 112-142 113-143 (264)
64 PF10267 Tmemb_cc2: Predicted 28.8 1.5E+02 0.0032 27.0 5.6 63 87-158 6-72 (395)
65 PHA00728 hypothetical protein 28.8 85 0.0018 23.6 3.5 40 85-129 5-44 (151)
66 PF14723 SSFA2_C: Sperm-specif 28.7 60 0.0013 25.9 2.8 19 122-140 159-177 (179)
67 PLN03230 acetyl-coenzyme A car 28.3 2.4E+02 0.0052 25.9 6.9 43 92-139 80-122 (431)
68 PF06657 Cep57_MT_bd: Centroso 27.8 2E+02 0.0044 19.7 8.4 55 87-145 19-73 (79)
69 COG4917 EutP Ethanolamine util 27.7 39 0.00085 25.9 1.5 25 35-59 59-83 (148)
70 PF15372 DUF4600: Domain of un 27.5 1.7E+02 0.0036 22.3 4.9 52 89-140 19-72 (129)
71 PF04873 EIN3: Ethylene insens 27.2 21 0.00045 31.8 0.0 39 25-63 53-92 (354)
72 PRK02759 bifunctional phosphor 27.1 1.3E+02 0.0027 24.8 4.5 37 16-52 46-92 (203)
73 cd03064 TRX_Fd_NuoE TRX-like [ 27.1 58 0.0013 21.9 2.3 28 39-69 52-80 (80)
74 KOG0250 DNA repair protein RAD 27.0 4.4E+02 0.0095 27.2 8.9 24 84-107 660-683 (1074)
75 TIGR01478 STEVOR variant surfa 26.7 1.8E+02 0.004 25.2 5.6 44 7-71 25-69 (295)
76 PF07676 PD40: WD40-like Beta 26.2 54 0.0012 18.5 1.7 19 42-60 10-28 (39)
77 PF06937 EURL: EURL protein; 26.2 1.3E+02 0.0028 25.9 4.5 37 111-147 211-247 (285)
78 PF11932 DUF3450: Protein of u 25.7 2.1E+02 0.0045 23.8 5.8 92 61-155 25-116 (251)
79 KOG2751 Beclin-like protein [S 25.6 5.3E+02 0.012 23.7 9.8 30 126-155 204-233 (447)
80 PF02151 UVR: UvrB/uvrC motif; 25.5 1.4E+02 0.0031 17.0 4.0 33 123-155 3-35 (36)
81 KOG0182 20S proteasome, regula 25.3 42 0.0009 27.8 1.4 18 39-56 7-24 (246)
82 TIGR00012 L29 ribosomal protei 24.6 1.4E+02 0.0031 18.8 3.6 27 116-142 2-28 (55)
83 PF07438 DUF1514: Protein of u 24.5 1.2E+02 0.0027 20.1 3.3 42 97-138 23-64 (66)
84 PRK11546 zraP zinc resistance 23.5 2.4E+02 0.0051 21.8 5.2 14 61-74 51-64 (143)
85 PF15397 DUF4618: Domain of un 23.5 3.8E+02 0.0083 22.8 6.9 16 60-75 38-53 (258)
86 TIGR02894 DNA_bind_RsfA transc 23.3 3.8E+02 0.0082 21.2 8.4 25 87-111 106-130 (161)
87 PF04912 Dynamitin: Dynamitin 22.9 3.3E+02 0.0071 24.3 6.9 23 84-106 93-115 (388)
88 PRK01470 tatA twin arginine tr 22.8 25 0.00055 22.3 -0.2 32 43-76 14-45 (51)
89 COG1422 Predicted membrane pro 22.7 4.2E+02 0.0092 21.7 6.7 25 132-156 97-121 (201)
90 PHA02123 hypothetical protein 22.6 43 0.00093 24.8 0.9 19 33-51 51-76 (146)
91 PF05377 FlaC_arch: Flagella a 22.5 1.7E+02 0.0037 18.8 3.6 25 87-111 16-40 (55)
92 PRK00051 hisI phosphoribosyl-A 22.5 55 0.0012 24.7 1.5 37 16-52 44-90 (125)
93 cd03750 proteasome_alpha_type_ 22.2 33 0.00072 28.1 0.3 17 44-60 4-22 (227)
94 PF04566 RNA_pol_Rpb2_4: RNA p 22.2 28 0.00062 22.9 -0.1 31 22-54 23-54 (63)
95 PF04697 Pinin_SDK_N: pinin/SD 22.0 1.8E+02 0.004 22.1 4.2 36 87-122 5-40 (134)
96 PF04945 YHS: YHS domain; Int 22.0 64 0.0014 19.4 1.5 23 39-61 6-31 (47)
97 PF09726 Macoilin: Transmembra 21.9 7.6E+02 0.016 24.2 11.3 30 129-158 622-653 (697)
98 PF05700 BCAS2: Breast carcino 21.7 4.5E+02 0.0097 21.5 9.2 75 84-163 142-218 (221)
99 PF03428 RP-C: Replication pro 21.4 3E+02 0.0065 22.0 5.6 62 41-110 96-169 (177)
100 cd04768 HTH_BmrR-like Helix-Tu 21.3 2.6E+02 0.0056 19.5 4.8 11 119-129 58-68 (96)
101 PTZ00246 proteasome subunit al 21.3 35 0.00077 28.5 0.3 22 40-61 4-27 (253)
102 cd04788 HTH_NolA-AlbR Helix-Tu 21.2 2.2E+02 0.0049 19.8 4.5 12 118-129 57-68 (96)
103 PF15243 ANAPC15: Anaphase-pro 21.2 1.3E+02 0.0028 21.5 3.1 23 121-143 27-49 (92)
104 PRK11637 AmiB activator; Provi 21.1 6.1E+02 0.013 22.8 10.3 12 90-101 52-63 (428)
105 cd03755 proteasome_alpha_type_ 20.9 39 0.00084 27.2 0.5 16 45-60 5-22 (207)
106 PF12537 DUF3735: Protein of u 20.7 1.9E+02 0.0042 19.3 3.8 25 121-145 47-71 (72)
107 PRK09039 hypothetical protein; 20.6 5.9E+02 0.013 22.4 9.4 24 85-108 137-160 (343)
108 PF01166 TSC22: TSC-22/dip/bun 20.6 2.4E+02 0.0053 18.4 4.0 28 84-111 13-40 (59)
109 PRK10132 hypothetical protein; 20.5 3.5E+02 0.0076 19.8 5.8 52 84-143 11-62 (108)
110 PRK10227 DNA-binding transcrip 20.4 1.8E+02 0.0039 21.9 4.1 11 33-43 4-14 (135)
111 PLN03237 DNA topoisomerase 2; 20.4 1.1E+03 0.024 25.5 11.4 109 45-157 989-1165(1465)
112 PF09388 SpoOE-like: Spo0E lik 20.2 2.1E+02 0.0046 17.1 4.1 20 118-137 21-40 (45)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=1.5e-39 Score=263.41 Aligned_cols=151 Identities=48% Similarity=0.686 Sum_probs=126.7
Q ss_pred CCcccccceeecCCCCcceeccccccchhhhhhhhhccCCcceeeEeecCCCCcccccchh--HHHHHHHHhhhcccccC
Q 028641 1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS--MQETIERYLKHTKDTRN 78 (206)
Q Consensus 1 M~R~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~valivfsp~gkl~~f~s~s--~~~ii~RY~~~~~~~~~ 78 (206)
|||+||+|++|+|.++|||||+|||+||||||+||||||||+||+|||||+|++|+|++++ |.+|++||.........
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999998875 99999999998776554
Q ss_pred CCCCchhh-H-------------------HHHHHHHHHHHHHHHHHHHH---hhHhhCCCCCCCCH-HHHHHHHHHHHHH
Q 028641 79 KQQPTEQN-M-------------------QHLKHEAANMVKKIELLEVS---KRKLLGEGLASCTL-EELQQIERQLEKS 134 (206)
Q Consensus 79 ~~~~~~~~-~-------------------q~lk~e~~~L~kkie~le~~---~r~l~ge~L~~ls~-~EL~~Le~~Le~~ 134 (206)
........ . +........+...++.++.. .+++.|+++.+++. .+|..++.+|+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~ 160 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS 160 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence 43321111 0 11334455566666666543 78899999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028641 135 VSNIRARKNQVFNEQIA 151 (206)
Q Consensus 135 L~~Ir~rK~qL~~eqi~ 151 (206)
+..+|..+...+.+++.
T Consensus 161 ~~~~~~~~~~~~~~~~~ 177 (195)
T KOG0014|consen 161 LHNSRSSKSKPLSDSNF 177 (195)
T ss_pred hcCCCCCCCcCCcchhh
Confidence 99999999888777765
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=100.00 E-value=8.5e-35 Score=202.60 Aligned_cols=75 Identities=69% Similarity=0.992 Sum_probs=72.4
Q ss_pred CcccccceeecCCCCcceeccccccchhhhhhhhhccCCcceeeEeecCCCCcccccchhHHHHHHHHhhhcccc
Q 028641 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDT 76 (206)
Q Consensus 2 ~R~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~valivfsp~gkl~~f~s~s~~~ii~RY~~~~~~~ 76 (206)
||+||+|++|||+.+|++||+||++||||||+|||+||||+||+|||||+|++|+|++|++++||+||.+.+...
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~~~ 75 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSGSS 75 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999887653
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=9e-32 Score=190.02 Aligned_cols=78 Identities=54% Similarity=0.741 Sum_probs=72.5
Q ss_pred CcccccceeecCCCCcceeccccccchhhhhhhhhccCCcceeeEeecCCCCcccccchh-HHHHHHHHhhhcccccCC
Q 028641 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS-MQETIERYLKHTKDTRNK 79 (206)
Q Consensus 2 ~R~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~valivfsp~gkl~~f~s~s-~~~ii~RY~~~~~~~~~~ 79 (206)
||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||+|||||+|++|.|++++ +..+++||...+...+..
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 79 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALERKK 79 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhhhc
Confidence 799999999999999999999999999999999999999999999999999999987764 999999999887665443
No 4
>smart00432 MADS MADS domain.
Probab=99.96 E-value=6.8e-31 Score=173.18 Aligned_cols=59 Identities=75% Similarity=1.058 Sum_probs=57.8
Q ss_pred CcccccceeecCCCCcceeccccccchhhhhhhhhccCCcceeeEeecCCCCcccccch
Q 028641 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60 (206)
Q Consensus 2 ~R~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~valivfsp~gkl~~f~s~ 60 (206)
||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|.|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999875
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=3.3e-30 Score=170.05 Aligned_cols=59 Identities=80% Similarity=1.078 Sum_probs=57.6
Q ss_pred CcccccceeecCCCCcceeccccccchhhhhhhhhccCCcceeeEeecCCCCcccccch
Q 028641 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60 (206)
Q Consensus 2 ~R~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~valivfsp~gkl~~f~s~ 60 (206)
||+||+|++|+|+..|++||+|||.||||||+||||||||+||+|||||+|++|.|+++
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 79999999999999999999999999999999999999999999999999999999875
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.94 E-value=7.5e-29 Score=158.45 Aligned_cols=51 Identities=63% Similarity=0.991 Sum_probs=47.1
Q ss_pred eeecCCCCcceeccccccchhhhhhhhhccCCcceeeEeecCCCCcccccc
Q 028641 9 RRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS 59 (206)
Q Consensus 9 k~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~valivfsp~gkl~~f~s 59 (206)
|+|+|.+.|++||+|||.||||||+|||+||||+||+|||||+|++|.|||
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 689999999999999999999999999999999999999999999999986
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.83 E-value=1.1e-21 Score=164.19 Aligned_cols=65 Identities=42% Similarity=0.618 Sum_probs=60.9
Q ss_pred CcccccceeecCCCCcceeccccccchhhhhhhhhccCCcceeeEeecCCCCcccccchhHHHHH
Q 028641 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETI 66 (206)
Q Consensus 2 ~R~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~valivfsp~gkl~~f~s~s~~~ii 66 (206)
||+||+|++|||+..|.|||||||.||||||+|||||+|.+|-|+|.|.+|.+|.|+.|.++.||
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i 127 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMI 127 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999998554433
No 8
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.63 E-value=2.3e-15 Score=109.94 Aligned_cols=75 Identities=41% Similarity=0.598 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028641 84 EQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKCG 158 (206)
Q Consensus 84 ~~~~q~lk~e~~~L~kkie~le~~~r~l~ge~L~~ls~~EL~~Le~~Le~~L~~Ir~rK~qL~~eqi~~Lk~k~~ 158 (206)
..+.+.++.++++|+.+++.|+..+|++.|++|++||++||++||.+|+.+|.+||+||.+++.++|..|+.|..
T Consensus 11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~ 85 (100)
T PF01486_consen 11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKER 85 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999999999999999999999866
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.50 E-value=5e-15 Score=129.34 Aligned_cols=67 Identities=39% Similarity=0.618 Sum_probs=62.9
Q ss_pred CCcccccceeecCCCCcceeccccccchhhhhhhhhccCCcceeeEeecCCCCcccccchhHHHHHH
Q 028641 1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIE 67 (206)
Q Consensus 1 M~R~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~valivfsp~gkl~~f~s~s~~~ii~ 67 (206)
|||+|+.|..|+|+.+|.|||+||+.||+|||+||+||.|.+|.|+|.|..|+++.|+.|..+.|+.
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~ 147 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVK 147 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCccccccc
Confidence 7899999999999999999999999999999999999999999999999999999999986555543
No 10
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=89.84 E-value=0.069 Score=28.29 Aligned_cols=14 Identities=36% Similarity=0.707 Sum_probs=11.2
Q ss_pred eeeEeecCCCCccc
Q 028641 43 VAVIIFSPRGKLSE 56 (206)
Q Consensus 43 valivfsp~gkl~~ 56 (206)
..+.+|||+|++|.
T Consensus 3 ~~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 3 RSITTFSPDGRLFQ 16 (23)
T ss_dssp SSTTSBBTTSSBHH
T ss_pred CCceeECCCCeEEe
Confidence 34678999999985
No 11
>PRK04098 sec-independent translocase; Provisional
Probab=89.77 E-value=0.36 Score=37.95 Aligned_cols=82 Identities=26% Similarity=0.348 Sum_probs=47.1
Q ss_pred ceeeEeecCCCCcccccchhHHHHHHHHhhhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCH
Q 028641 42 EVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTL 121 (206)
Q Consensus 42 ~valivfsp~gkl~~f~s~s~~~ii~RY~~~~~~~~~~~~~~~~~~q~lk~e~~~L~kkie~le~~~r~l~ge~L~~ls~ 121 (206)
=||||||+|. ||++.+. .+-..+..|++........-. .+-++..++.++.+.++.++......|. .+++
T Consensus 14 vVaLlvfGP~-KLP~~~r-~lGk~ir~~K~~~~~~k~~l~-~Ei~~~elk~e~~k~k~~l~~~~~~l~~-------~~~~ 83 (158)
T PRK04098 14 VVAIIFLGPD-KLPQAMV-DIAKFFKAVKKTINDAKSTLD-KEINIEEIKEEALKYKKEFESAVESLKK-------KLKF 83 (158)
T ss_pred HHHHhhcCch-HHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHh-------ccCh
Confidence 3789999995 8876643 444555555554433211000 0123455777777777666666555542 2678
Q ss_pred HHHHHHHHHHHH
Q 028641 122 EELQQIERQLEK 133 (206)
Q Consensus 122 ~EL~~Le~~Le~ 133 (206)
++|.++-.-+..
T Consensus 84 eel~~~~~~~~~ 95 (158)
T PRK04098 84 EELDDLKITAEN 95 (158)
T ss_pred HHHHHHhhhhhh
Confidence 888887654444
No 12
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=87.02 E-value=1.5 Score=28.73 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=27.5
Q ss_pred HhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028641 110 KLLGEGLASCTLEELQQIERQLEKSVSNIRARK 142 (206)
Q Consensus 110 ~l~ge~L~~ls~~EL~~Le~~Le~~L~~Ir~rK 142 (206)
+..|++|+.||++||.+--..|+.-+.++++-.
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAAI 44 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999998888888777776644
No 13
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=75.94 E-value=25 Score=27.47 Aligned_cols=52 Identities=29% Similarity=0.384 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028641 90 LKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARK 142 (206)
Q Consensus 90 lk~e~~~L~kkie~le~~~r~l~ge~L~~ls~~EL~~Le~~Le~~L~~Ir~rK 142 (206)
+...+..+..+++.++..+..+-+ +....|.+|...++.......+..+.||
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555544444443 3334666666666666666666666665
No 14
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=67.73 E-value=63 Score=26.39 Aligned_cols=33 Identities=33% Similarity=0.503 Sum_probs=21.9
Q ss_pred cCCcceeeEeecCCCCcccccchhHHHHHHHHhhhcccc
Q 028641 38 LCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDT 76 (206)
Q Consensus 38 LCda~valivfsp~gkl~~f~s~s~~~ii~RY~~~~~~~ 76 (206)
--||++|++|||.+++ | |.+.+++=|.......
T Consensus 90 yrgaqa~vLVFSTTDr-~-----SFea~~~w~~kv~~e~ 122 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDR-Y-----SFEATLEWYNKVQKET 122 (246)
T ss_pred hccccceEEEEecccH-H-----HHHHHHHHHHHHHHHh
Confidence 3589999999998753 3 3355666666554443
No 15
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=67.32 E-value=69 Score=29.44 Aligned_cols=61 Identities=25% Similarity=0.581 Sum_probs=37.3
Q ss_pred cceeecCCCCc-ceecc---ccc-------cchhhhhhhhhccCCcceeeEeecCCCCcccccchhHHHHHHHHhhhc
Q 028641 7 QMRRIENATSR-QVTFS---KRR-------NGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHT 73 (206)
Q Consensus 7 ~ik~Ien~~~R-qvTfs---KRr-------~GL~KKA~ELsvLCda~valivfsp~gkl~~f~s~s~~~ii~RY~~~~ 73 (206)
.|.-|.|.+.| .|.|- ||. ++|+|+ ..|.+--. +-+++|.++|++..| ++.+||..|..+-
T Consensus 257 ~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k~-t~L~~s~~--~Nm~~~~~~g~p~~~---~l~~iL~~f~~~R 328 (445)
T cd00187 257 GISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKV-TKLQTTFG--INMVAFDPNGRPKKL---NLKEILQEFLDHR 328 (445)
T ss_pred ccceeeeccCCCceEEEEEECCCccHHHHHHHHHHh-cCCceeee--eeEEEEecCCeeEEe---CHHHHHHHHHHHH
Confidence 46667777776 34442 332 255533 23322211 167888899998888 7888898887653
No 16
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=66.32 E-value=33 Score=29.95 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=27.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028641 114 EGLASCTLEELQQIERQLEKSVSNIRARKNQV 145 (206)
Q Consensus 114 e~L~~ls~~EL~~Le~~Le~~L~~Ir~rK~qL 145 (206)
..+++|+.++|..+...|..-...|..++.++
T Consensus 196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 196 DELEDCDPTELDRAKEKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999888888887664
No 17
>PRK01919 tatB sec-independent translocase; Provisional
Probab=64.15 E-value=41 Score=26.76 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=17.0
Q ss_pred eeeEeecCCCCcccccchhHHHHHHHHhh
Q 028641 43 VAVIIFSPRGKLSEFASSSMQETIERYLK 71 (206)
Q Consensus 43 valivfsp~gkl~~f~s~s~~~ii~RY~~ 71 (206)
||||||+|. +|++.+- ++-..+.+++.
T Consensus 15 VALiV~GPe-kLP~~aR-tlGk~i~k~Rr 41 (169)
T PRK01919 15 VALVVIGPE-RLPRVAR-TAGALFGRAQR 41 (169)
T ss_pred HHHheeCch-HhHHHHH-HHHHHHHHHHH
Confidence 799999995 7765532 34444445544
No 18
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=63.82 E-value=44 Score=29.16 Aligned_cols=33 Identities=30% Similarity=0.569 Sum_probs=26.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028641 114 EGLASCTLEELQQIERQLEKSVSNIRARKNQVF 146 (206)
Q Consensus 114 e~L~~ls~~EL~~Le~~Le~~L~~Ir~rK~qL~ 146 (206)
..++.|+.++|..+...|...-..|.+++..+-
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~ 233 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELA 233 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999988888888887776543
No 19
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=63.35 E-value=66 Score=25.88 Aligned_cols=94 Identities=26% Similarity=0.299 Sum_probs=47.3
Q ss_pred CCCCcccccchhHHHHHHHHhhhcccccCCCC--C--chhhHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHH
Q 028641 50 PRGKLSEFASSSMQETIERYLKHTKDTRNKQQ--P--TEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQ 125 (206)
Q Consensus 50 p~gkl~~f~s~s~~~ii~RY~~~~~~~~~~~~--~--~~~~~q~lk~e~~~L~kkie~le~~~r~l~ge~L~~ls~~EL~ 125 (206)
..|-|..-.-.....++++|.......-.... . .++....+..++..|..+++.|+.. +.+|.
T Consensus 81 ERGlLL~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~-------------~~~l~ 147 (189)
T PF10211_consen 81 ERGLLLLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQ-------------VQELK 147 (189)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH
Confidence 45555544445667777887765443211100 0 0111223444444444444444432 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028641 126 QIERQLEKSVSNIRARKNQVFNEQIAQLKEK 156 (206)
Q Consensus 126 ~Le~~Le~~L~~Ir~rK~qL~~eqi~~Lk~k 156 (206)
.-...++.....-+....+...++|+.|+..
T Consensus 148 ~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 148 NKCEQLEKREEELRQEEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555556666677888888774
No 20
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=59.97 E-value=12 Score=30.78 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=38.3
Q ss_pred ccchhhhh----hhhhccCCcceeeEeecCCC--Ccc-cccchhHHHHHHHHhhh
Q 028641 25 RNGLLKKA----FELSVLCDAEVAVIIFSPRG--KLS-EFASSSMQETIERYLKH 72 (206)
Q Consensus 25 r~GL~KKA----~ELsvLCda~valivfsp~g--kl~-~f~s~s~~~ii~RY~~~ 72 (206)
++-|+.|- .|++|-+|-++.+++.+|+. ..| .|+...++.|+..|...
T Consensus 34 ~~rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~pL~~vv~~~~~~ 88 (214)
T PF10491_consen 34 QTRLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAAPLENVVRNLKPV 88 (214)
T ss_pred HHHHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecchhHHHHHHHHHHH
Confidence 34566665 79999999999999999973 233 48888999999999874
No 21
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=59.85 E-value=40 Score=27.02 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHhhCC--CC-CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028641 85 QNMQHLKHEAANMVKKIELLEVSKRKLLGE--GL-ASCTLEELQQIERQLEKSVSNIRARK 142 (206)
Q Consensus 85 ~~~q~lk~e~~~L~kkie~le~~~r~l~ge--~L-~~ls~~EL~~Le~~Le~~L~~Ir~rK 142 (206)
++.+.|..++..+..+...|....+.+..+ .| ..|+++|+|+-.+.|..-...-|+|-
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl 139 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERL 139 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555544443333221 12 23677777777777776666655553
No 22
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=57.29 E-value=1.5e+02 Score=27.22 Aligned_cols=111 Identities=11% Similarity=0.211 Sum_probs=54.1
Q ss_pred eeeEeecCCCCcccccchhHHHHHHHHhhhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh---hHhhCCC----
Q 028641 43 VAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSK---RKLLGEG---- 115 (206)
Q Consensus 43 valivfsp~gkl~~f~s~s~~~ii~RY~~~~~~~~~~~~~~~~~~q~lk~e~~~L~kkie~le~~~---r~l~ge~---- 115 (206)
+-+++|+++|++..| .++.+||..|-.+-..--.+.. +..+..++.++..+..++..++.-. +...+..
T Consensus 299 ~Nm~~~d~~g~~~~~--~~~~~Il~~f~~~R~~~~~kR~--~~~l~k~~~r~~~l~~~~~fI~~vi~~~~~~~~~~~~~~ 374 (439)
T PHA02592 299 QNITVINENGKLKVY--ENAEDLIRDFVEIRKTYVQKRI--QYEIKETEEAFDLALAKAEFIKRVIAGEIVLQGKTRSEL 374 (439)
T ss_pred eeEEEEecCCeeeec--CCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHH
Confidence 667899999988877 5677888888664322100000 1112222233332222222221110 0000000
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028641 116 ---LASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKCG 158 (206)
Q Consensus 116 ---L~~ls~~EL~~Le~~Le~~L~~Ir~rK~qL~~eqi~~Lk~k~~ 158 (206)
+..+...+ .+.+..|+..|.++..-..+-+.++++.|+++..
T Consensus 375 ~~~l~~~~~~~-~q~~~lL~m~L~~LT~~e~~kL~~e~~~l~~ei~ 419 (439)
T PHA02592 375 TEELSDNKDFG-EYADKLVAMNIYSMTSDEREKLQKEAEELEKEHE 419 (439)
T ss_pred HHHHHHcCCCH-HHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 00011111 2466667777777777666677777777777544
No 23
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=56.02 E-value=5.9 Score=32.74 Aligned_cols=21 Identities=33% Similarity=0.648 Sum_probs=16.6
Q ss_pred cceeeEeecCCCCccc--ccchh
Q 028641 41 AEVAVIIFSPRGKLSE--FASSS 61 (206)
Q Consensus 41 a~valivfsp~gkl~~--f~s~s 61 (206)
-|-||-||||+|+|+. |+..-
T Consensus 4 ydraltvFSPDGhL~QVEYAqEA 26 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQVEYAQEA 26 (249)
T ss_pred cccceEEECCCCCEEeeHhHHHH
Confidence 4678999999999985 76543
No 24
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=55.04 E-value=5.9 Score=32.89 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=20.1
Q ss_pred hccCCcceeeEeecCCCCccc--ccch
Q 028641 36 SVLCDAEVAVIIFSPRGKLSE--FASS 60 (206)
Q Consensus 36 svLCda~valivfsp~gkl~~--f~s~ 60 (206)
||=.|-|.|.-+|||+|++|. |+..
T Consensus 3 sIGtGyDls~s~fSpdGrvfQveYA~K 29 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQVEYAQK 29 (254)
T ss_pred cccccccccceeeCCCCceehHHHHHH
Confidence 455678999999999999986 7654
No 25
>PRK00182 tatB sec-independent translocase; Provisional
Probab=54.44 E-value=8.9 Score=30.23 Aligned_cols=37 Identities=16% Similarity=0.312 Sum_probs=24.1
Q ss_pred hhhccCCcceeeEeecCCCCcccccchhHHHHHHHHhhhcc
Q 028641 34 ELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTK 74 (206)
Q Consensus 34 ELsvLCda~valivfsp~gkl~~f~s~s~~~ii~RY~~~~~ 74 (206)
||-|+. =||||||+| +||+++.. .+...|..|++...
T Consensus 9 EllvIl--vIaLlVfGP-erLP~~~r-~lg~~ir~~R~~~~ 45 (160)
T PRK00182 9 EILLLL--IVGLIVIGP-ERLPRLIE-DVRAALLAARTAIN 45 (160)
T ss_pred HHHHHH--HHHHHhcCc-hHHHHHHH-HHHHHHHHHHHHHH
Confidence 555554 379999999 48887763 45555666665443
No 26
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=54.36 E-value=10 Score=21.47 Aligned_cols=27 Identities=15% Similarity=0.379 Sum_probs=17.6
Q ss_pred hhhccCCcceeeEeecCCCCc--ccccch
Q 028641 34 ELSVLCDAEVAVIIFSPRGKL--SEFASS 60 (206)
Q Consensus 34 ELsvLCda~valivfsp~gkl--~~f~s~ 60 (206)
.|+--||+-|-+-||...|.+ |-.+.|
T Consensus 2 hlcpkcgvgvl~pvy~~kgeikvfrcsnp 30 (36)
T PF09151_consen 2 HLCPKCGVGVLEPVYNQKGEIKVFRCSNP 30 (36)
T ss_dssp -B-TTTSSSBEEEEE-TTS-EEEEEES-T
T ss_pred ccCCccCceEEEEeecCCCcEEEEEcCCC
Confidence 366779999999999999954 444444
No 27
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=53.16 E-value=4.8 Score=27.69 Aligned_cols=38 Identities=26% Similarity=0.503 Sum_probs=28.5
Q ss_pred Ccceeccccccchhhhh---------hhhhccCCcceeeEeecCCCC
Q 028641 16 SRQVTFSKRRNGLLKKA---------FELSVLCDAEVAVIIFSPRGK 53 (206)
Q Consensus 16 ~RqvTfsKRr~GL~KKA---------~ELsvLCda~valivfsp~gk 53 (206)
.+-+.||+-|++|-.|. .|+.+-||.|+-|+..-|.|.
T Consensus 17 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 17 GRATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp SB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred CcEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 34445788888886664 789999999999999998886
No 28
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=52.54 E-value=34 Score=23.44 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=27.5
Q ss_pred HHHHHhhhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 028641 65 TIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVS 107 (206)
Q Consensus 65 ii~RY~~~~~~~~~~~~~~~~~~q~lk~e~~~L~kkie~le~~ 107 (206)
++-.|.+.............+.++.|-..+.+|.++|+.||.-
T Consensus 22 l~lHY~~k~~~~~~ls~~d~~~L~~L~~~a~rm~eRI~tLE~I 64 (75)
T TIGR02976 22 LILHYRSKRKTAASLSTDDQALLQELYAKADRLEERIDTLERI 64 (75)
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556765444333222223445677888899999999999853
No 29
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=50.24 E-value=11 Score=27.87 Aligned_cols=39 Identities=21% Similarity=0.416 Sum_probs=29.4
Q ss_pred Ccceeccccccchhhh---------hhhhhccCCcceeeEeecCCCCc
Q 028641 16 SRQVTFSKRRNGLLKK---------AFELSVLCDAEVAVIIFSPRGKL 54 (206)
Q Consensus 16 ~RqvTfsKRr~GL~KK---------A~ELsvLCda~valivfsp~gkl 54 (206)
.+-..||+-|+-|-+| ..|+.+-||.|+-+++..|.|.+
T Consensus 49 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg~ 96 (111)
T COG0139 49 GEAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGGP 96 (111)
T ss_pred CeEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 3444567777755554 58999999999999999996643
No 30
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=50.02 E-value=14 Score=28.44 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=26.1
Q ss_pred CcceeeEeecCCCCcccccch-hHHHHHHHHhhhc
Q 028641 40 DAEVAVIIFSPRGKLSEFASS-SMQETIERYLKHT 73 (206)
Q Consensus 40 da~valivfsp~gkl~~f~s~-s~~~ii~RY~~~~ 73 (206)
...++-||+ ++|++.+|..| .+.+|+..|=.+.
T Consensus 14 ~~~~vkvv~-~~G~v~~~~~pv~a~evm~~~P~h~ 47 (181)
T PF14009_consen 14 SAATVKVVH-PDGKVEEFKRPVTAAEVMLENPGHF 47 (181)
T ss_pred CCceEEEEc-CCCcEEEeCCCcCHHHHHHHCCCCE
Confidence 445555555 78999999888 9999999997763
No 31
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=48.86 E-value=44 Score=22.91 Aligned_cols=43 Identities=30% Similarity=0.353 Sum_probs=27.6
Q ss_pred HHHHHhhhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 028641 65 TIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVS 107 (206)
Q Consensus 65 ii~RY~~~~~~~~~~~~~~~~~~q~lk~e~~~L~kkie~le~~ 107 (206)
++--|.+.....+..+....+.++.|-..+.+|.++|+.||.-
T Consensus 22 L~lHY~sk~~~~~gLs~~d~~~L~~L~~~a~rm~eRI~tLE~I 64 (75)
T PF06667_consen 22 LILHYRSKWKSSQGLSEEDEQRLQELYEQAERMEERIETLERI 64 (75)
T ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556766443333322222345778889999999999999853
No 32
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=48.66 E-value=1.3e+02 Score=23.44 Aligned_cols=55 Identities=24% Similarity=0.378 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028641 87 MQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQV 145 (206)
Q Consensus 87 ~q~lk~e~~~L~kkie~le~~~r~l~ge~L~~ls~~EL~~Le~~Le~~L~~Ir~rK~qL 145 (206)
+..|+.++..+...+..|+..+..+. ..++.+||...-.+|+.-+..+.+|-..|
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~----~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLS----SEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666655554 44678888887777777776666665443
No 33
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=47.66 E-value=73 Score=21.56 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 028641 119 CTLEELQQIERQLEKSVSNIRAR 141 (206)
Q Consensus 119 ls~~EL~~Le~~Le~~L~~Ir~r 141 (206)
+|++.|.+||..+..++..|..=
T Consensus 1 M~~E~l~~LE~ki~~aveti~~L 23 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIALL 23 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888877543
No 34
>PRK01371 sec-independent translocase; Provisional
Probab=46.99 E-value=22 Score=27.33 Aligned_cols=22 Identities=50% Similarity=0.745 Sum_probs=14.4
Q ss_pred hhhccCCcceeeEeecCCCCccccc
Q 028641 34 ELSVLCDAEVAVIIFSPRGKLSEFA 58 (206)
Q Consensus 34 ELsvLCda~valivfsp~gkl~~f~ 58 (206)
||-|+. =||||||+|. |+++++
T Consensus 8 EllvIl--vVallvfGPe-KLP~~a 29 (137)
T PRK01371 8 ELVVLV--VLAVLVFGPD-KLPKAA 29 (137)
T ss_pred HHHHHH--HHHhheeCch-HHHHHH
Confidence 444443 3789999995 777654
No 35
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=46.72 E-value=15 Score=27.00 Aligned_cols=27 Identities=37% Similarity=0.321 Sum_probs=21.3
Q ss_pred hhhhhccCCcceeeEeecCCCCcccccc
Q 028641 32 AFELSVLCDAEVAVIIFSPRGKLSEFAS 59 (206)
Q Consensus 32 A~ELsvLCda~valivfsp~gkl~~f~s 59 (206)
-.+|..|-|| +|...||++|++.+|-.
T Consensus 3 l~~Lm~lpGv-~AAg~Fs~~G~l~e~~G 29 (108)
T PF09941_consen 3 LDKLMKLPGV-VAAGEFSDDGKLVEYKG 29 (108)
T ss_pred HHHhhcCCCe-EEEEEECCCCeEEeeec
Confidence 4577778887 55688999999999755
No 36
>PRK04654 sec-independent translocase; Provisional
Probab=45.20 E-value=11 Score=31.11 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=20.2
Q ss_pred hhhccCCcceeeEeecCCCCcccccchhHHHHHHHHhh
Q 028641 34 ELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLK 71 (206)
Q Consensus 34 ELsvLCda~valivfsp~gkl~~f~s~s~~~ii~RY~~ 71 (206)
||-+.. =||||||+|. ||...+. .+-..+.++++
T Consensus 8 ELLlI~--VVALlV~GPe-rLPe~aR-tlGk~irk~R~ 41 (214)
T PRK04654 8 ELTLIA--VVALVVLGPE-RLPKAAR-FAGLWVRRARM 41 (214)
T ss_pred HHHHHH--HHHHHhcCch-HHHHHHH-HHHHHHHHHHH
Confidence 444443 3789999995 7766543 34445555553
No 37
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=44.24 E-value=1.1e+02 Score=21.51 Aligned_cols=78 Identities=14% Similarity=0.177 Sum_probs=43.7
Q ss_pred hHHHHHHHHhhhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhHhhCCC--CCCCCHHHHHHHHHHHHHHHHHH
Q 028641 61 SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEG--LASCTLEELQQIERQLEKSVSNI 138 (206)
Q Consensus 61 s~~~ii~RY~~~~~~~~~~~~~~~~~~q~lk~e~~~L~kkie~le~~~r~l~ge~--L~~ls~~EL~~Le~~Le~~L~~I 138 (206)
.+..++.+|........ ...........|+..+..+...++.|+....-....+ . +++..||..-...+...-..|
T Consensus 16 ~l~~~~~~~~~~~~~~~-~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF-~l~~~Ei~~Rr~fv~~~~~~i 93 (97)
T PF09177_consen 16 RLESLYRRWQRLRSDTS-SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKF-NLSEEEISRRRQFVSAIRNQI 93 (97)
T ss_dssp HHHHHHHHHHHHTTHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-T-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCC-CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-CCCHHHHHHHHHHHHHHHHHH
Confidence 57777888877655443 1000112233466666677777777766654433221 2 567788887777766665555
Q ss_pred HH
Q 028641 139 RA 140 (206)
Q Consensus 139 r~ 140 (206)
..
T Consensus 94 ~~ 95 (97)
T PF09177_consen 94 KQ 95 (97)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 38
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=40.13 E-value=1.2e+02 Score=26.23 Aligned_cols=57 Identities=21% Similarity=0.467 Sum_probs=39.8
Q ss_pred CCcceeccccccch---------hhhhhhhhccCCcceeeEeecCCCC-------cccccch-----hHHHHHHHHhh
Q 028641 15 TSRQVTFSKRRNGL---------LKKAFELSVLCDAEVAVIIFSPRGK-------LSEFASS-----SMQETIERYLK 71 (206)
Q Consensus 15 ~~RqvTfsKRr~GL---------~KKA~ELsvLCda~valivfsp~gk-------l~~f~s~-----s~~~ii~RY~~ 71 (206)
+.|-|.||+-|+.| +-+.-.++|-||-|.-..+.-++|+ ...|+.. ++++||..-++
T Consensus 180 ~g~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l~f~v~q~g~gfCHl~t~~Cfg~~~~gL~~LEs~l~~Rk~ 257 (359)
T KOG4311|consen 180 SGKGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSLIFLVTQDGPGFCHLGTETCFGTSVFGLYSLESILSKRKE 257 (359)
T ss_pred cCcceEEecccceeeeccccCcCceeeEEEeeccCccceEEEEecCCCcccccCcceeeeeechhhhhHHHHHHHhhh
Confidence 45677788888745 4445688999999988888888876 3334432 78888854444
No 39
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=40.05 E-value=1.5e+02 Score=21.71 Aligned_cols=71 Identities=17% Similarity=0.280 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcc
Q 028641 87 MQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEK-------CGM 159 (206)
Q Consensus 87 ~q~lk~e~~~L~kkie~le~~~r~l~ge~L~~ls~~EL~~Le~~Le~~L~~Ir~rK~qL~~eqi~~Lk~k-------~~~ 159 (206)
++.+..|+..|-... |.-+ .+-.+.+-+|+.+|-..++..|+.+|.|-...--.-+..-+.- +..
T Consensus 10 ~~~l~~el~~L~d~l---EevL-----~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e 81 (104)
T COG4575 10 IDQLLAELQELLDTL---EEVL-----KSSGSLAGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRE 81 (104)
T ss_pred HHHHHHHHHHHHHHH---HHHH-----HhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHc
Confidence 455555555554333 3222 2345678999999999999999999998766543333333331 225
Q ss_pred cCCCCC
Q 028641 160 ENWQGS 165 (206)
Q Consensus 160 ~~~~~~ 165 (206)
+||+..
T Consensus 82 ~PWq~V 87 (104)
T COG4575 82 NPWQGV 87 (104)
T ss_pred CCchHH
Confidence 688754
No 40
>PRK03100 sec-independent translocase; Provisional
Probab=39.21 E-value=20 Score=27.48 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=19.8
Q ss_pred hhhccCCcceeeEeecCCCCcccccchhHHHHHHHHhh
Q 028641 34 ELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLK 71 (206)
Q Consensus 34 ELsvLCda~valivfsp~gkl~~f~s~s~~~ii~RY~~ 71 (206)
||-|+. =||||||+|. +|.+... .+-..+..++.
T Consensus 9 EllvI~--vVaLvv~GPk-rLP~~~r-~lG~~vr~~R~ 42 (136)
T PRK03100 9 EMLVLV--VAGLVILGPE-RLPGAIR-WTARALRQARD 42 (136)
T ss_pred HHHHHH--HHHHhhcCch-HHHHHHH-HHHHHHHHHHH
Confidence 454443 3789999995 7776543 33344444443
No 41
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=38.95 E-value=30 Score=31.04 Aligned_cols=42 Identities=26% Similarity=0.316 Sum_probs=29.7
Q ss_pred hhhhccCCcce--eeEeecCCCCcccccc---hhHHHHHHHHhhhcc
Q 028641 33 FELSVLCDAEV--AVIIFSPRGKLSEFAS---SSMQETIERYLKHTK 74 (206)
Q Consensus 33 ~ELsvLCda~v--alivfsp~gkl~~f~s---~s~~~ii~RY~~~~~ 74 (206)
+=|||+||-+| |||--..+|=-|.-|. +++++.+.-|+..+-
T Consensus 367 yalSV~~~~~V~HClIy~tatG~GFa~pyn~y~tlk~lV~hY~h~SL 413 (464)
T KOG4637|consen 367 YALSVVHDGEVKHCLIYQTATGFGFAEPYNLYSTLKELVLHYQHTSL 413 (464)
T ss_pred eEEEEEECCceeeeEEeeccccccccchhHHHHHHHHHHHHHhhhhH
Confidence 67899999888 7776666664443332 278899999987554
No 42
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=38.90 E-value=39 Score=28.66 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=15.5
Q ss_pred hhhccCCcceeeEeecCCCCcccccchhHHHHHHHHhh
Q 028641 34 ELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLK 71 (206)
Q Consensus 34 ELsvLCda~valivfsp~gkl~~f~s~s~~~ii~RY~~ 71 (206)
=|++|+++=+....+.|. .+..-++++.++-+.+..+
T Consensus 11 ~~~~l~~~~~~~~~~a~a-~v~~~~~~~~~~r~~~le~ 47 (263)
T PRK10803 11 SLSLLVGVAAPWAAFAQA-PISSVGSGSVEDRVTQLER 47 (263)
T ss_pred HHHHHHHHhhhHHHhcCC-cHHHcCCCchHHHHHHHHH
Confidence 345566543333333332 1222334455555554444
No 43
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=38.37 E-value=53 Score=20.63 Aligned_cols=18 Identities=39% Similarity=0.248 Sum_probs=10.9
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 028641 115 GLASCTLEELQQIERQLE 132 (206)
Q Consensus 115 ~L~~ls~~EL~~Le~~Le 132 (206)
-|..+|++||++.-..|+
T Consensus 4 fLk~ls~~eL~~rl~~LD 21 (49)
T PF11629_consen 4 FLKFLSYEELQQRLASLD 21 (49)
T ss_dssp GGGGS-HHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHhCC
Confidence 356788888887544443
No 44
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.44 E-value=2.6e+02 Score=23.98 Aligned_cols=33 Identities=12% Similarity=0.400 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028641 121 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLK 154 (206)
Q Consensus 121 ~~EL~~Le~~Le~~L~~Ir~rK~qL~~eqi~~Lk 154 (206)
-.++..|+..|+..-.+|++|++ +|.++..-++
T Consensus 79 ~~eik~l~~eI~~~~~~I~~r~~-~l~~raRAmq 111 (265)
T COG3883 79 KAEIKKLQKEIAELKENIVERQE-LLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 56788888999999999999974 4444444433
No 45
>PLN02372 violaxanthin de-epoxidase
Probab=37.26 E-value=3.3e+02 Score=24.97 Aligned_cols=28 Identities=32% Similarity=0.582 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028641 121 LEELQQIERQLEKSVSNIRARKNQVFNE 148 (206)
Q Consensus 121 ~~EL~~Le~~Le~~L~~Ir~rK~qL~~e 148 (206)
++|..+++.+|+.-...|+..-..++..
T Consensus 378 ~~e~~~~~~e~~~~v~~~~~~~~~~~~~ 405 (455)
T PLN02372 378 VKEARQIEEELEKEVEKLGKEEESLFKR 405 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666555555555444443
No 46
>PF14282 FlxA: FlxA-like protein
Probab=36.51 E-value=1.6e+02 Score=21.22 Aligned_cols=58 Identities=16% Similarity=0.297 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028641 85 QNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIA 151 (206)
Q Consensus 85 ~~~q~lk~e~~~L~kkie~le~~~r~l~ge~L~~ls~~EL~~Le~~Le~~L~~Ir~rK~qL~~eqi~ 151 (206)
..+..|+..+..|.++|. .+... .+++.++-+.-...|..-+..|.+...++..++.+
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~-------~l~~~--~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQ-------ELSQD--SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHcc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554 33322 45677777777677777666666665555444433
No 47
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=36.42 E-value=2.2e+02 Score=22.75 Aligned_cols=67 Identities=21% Similarity=0.259 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028641 88 QHLKHEAANMVKKIELLEVSKRKLLGEG---LASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLK 154 (206)
Q Consensus 88 q~lk~e~~~L~kkie~le~~~r~l~ge~---L~~ls~~EL~~Le~~Le~~L~~Ir~rK~qL~~eqi~~Lk 154 (206)
+++.-++..+.++|+.|+.....+-.+. -....-++++.|+..|....+.-..++++|+-+-+..|.
T Consensus 101 ~Y~~leL~s~~~ei~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~~emeLyyecMkkL~ 170 (181)
T PF04645_consen 101 QYKNLELKSIKKEIEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREIREMELYYECMKKLA 170 (181)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555566666666654443332110 011223568889999999888888888888888877774
No 48
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=36.32 E-value=37 Score=24.49 Aligned_cols=30 Identities=37% Similarity=0.387 Sum_probs=22.4
Q ss_pred hhhhhhhccCCcceeeEeecCCCCcccccch
Q 028641 30 KKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60 (206)
Q Consensus 30 KKA~ELsvLCda~valivfsp~gkl~~f~s~ 60 (206)
-|-.||--+-||- |.=.|||+|||.+|-++
T Consensus 3 ekLdeLlqi~Gv~-AAGefs~DGkLv~Ykgd 32 (109)
T COG4831 3 EKLDELLQIKGVM-AAGEFSPDGKLVEYKGD 32 (109)
T ss_pred hhHHHHhCcccee-EeceeCCCCceEEeeCC
Confidence 3566777777764 45679999999998764
No 49
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=35.98 E-value=1.5e+02 Score=23.41 Aligned_cols=38 Identities=34% Similarity=0.429 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 028641 120 TLEELQQIERQLEKSVSNIRAR---KNQVFNEQIAQLKEKC 157 (206)
Q Consensus 120 s~~EL~~Le~~Le~~L~~Ir~r---K~qL~~eqi~~Lk~k~ 157 (206)
+..+|-.|-.+++.+-.-+|++ |-..+.+||..|+++.
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA 68 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQA 68 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5678888888888888888775 5557788999999853
No 50
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=35.83 E-value=35 Score=23.66 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=24.7
Q ss_pred ceeeEeecCCC--Ccccccch-hHHHHHHHHhhh
Q 028641 42 EVAVIIFSPRG--KLSEFASS-SMQETIERYLKH 72 (206)
Q Consensus 42 ~valivfsp~g--kl~~f~s~-s~~~ii~RY~~~ 72 (206)
.+-++|++..| +++.++.+ ....++.+|...
T Consensus 8 rl~VLVv~n~c~~kL~~~~~~~D~~~i~r~f~Tp 41 (83)
T PF10623_consen 8 RLQVLVVSNHCERKLFDTKPDNDPDKIARRFCTP 41 (83)
T ss_pred eEEEEEEeCCcceeEeecCCCCCHHHHHhhccCc
Confidence 46688999887 67777665 899999999863
No 51
>PLN03128 DNA topoisomerase 2; Provisional
Probab=34.58 E-value=4.8e+02 Score=27.17 Aligned_cols=28 Identities=18% Similarity=0.525 Sum_probs=21.1
Q ss_pred eeEeecCCCCcccccchhHHHHHHHHhhhc
Q 028641 44 AVIIFSPRGKLSEFASSSMQETIERYLKHT 73 (206)
Q Consensus 44 alivfsp~gkl~~f~s~s~~~ii~RY~~~~ 73 (206)
-+++|.+.|++..| .++.+||..|..+-
T Consensus 961 nm~l~d~~~~i~ky--~~~~~il~~f~~~R 988 (1135)
T PLN03128 961 NMHLFDKDGKIKKY--DSPEDILEEFFHLR 988 (1135)
T ss_pred EEEEECCCCcccCC--CCHHHHHHHHHHHH
Confidence 57789999998887 45677888876643
No 52
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.34 E-value=1.5e+02 Score=20.12 Aligned_cols=34 Identities=26% Similarity=0.541 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028641 119 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKC 157 (206)
Q Consensus 119 ls~~EL~~Le~~Le~~L~~Ir~rK~qL~~eqi~~Lk~k~ 157 (206)
+|++=|..||..+..++..| +|+.=+|+.||+|-
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEkn 34 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKN 34 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHh
Confidence 35555566666666555544 34555566666653
No 53
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=34.29 E-value=2.9e+02 Score=25.19 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHhhCC-CCCCCCHHHHHHHHHHHHHHHHH
Q 028641 86 NMQHLKHEAANMVKKIELLEVSKRKLLGE-GLASCTLEELQQIERQLEKSVSN 137 (206)
Q Consensus 86 ~~q~lk~e~~~L~kkie~le~~~r~l~ge-~L~~ls~~EL~~Le~~Le~~L~~ 137 (206)
....++....+++.....++...+.+.-| ..+-++.+||..+...|...+..
T Consensus 256 ~~~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~grl~~~Dl~~i~~~lr~l~~~ 308 (459)
T PF10337_consen 256 SLKKLKATKAKLRALYAKLQAALRFLKLEISYGRLSPDDLKPIFSLLRSLMIP 308 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHeeecCCHHHHHHHHHHHHHHHHH
Confidence 34667777888888888888777665444 56778999999998777664443
No 54
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=34.01 E-value=43 Score=22.02 Aligned_cols=30 Identities=20% Similarity=0.500 Sum_probs=21.4
Q ss_pred CCcceeeEeecCCCCcccccch-hHHHHHHHH
Q 028641 39 CDAEVAVIIFSPRGKLSEFASS-SMQETIERY 69 (206)
Q Consensus 39 Cda~valivfsp~gkl~~f~s~-s~~~ii~RY 69 (206)
|+..-.++|+ |.|..|...++ .+..|++.+
T Consensus 47 C~~~P~v~i~-~~~~~y~~v~~~~~~~il~~~ 77 (77)
T cd02980 47 CGLAPVVVVY-PDGVWYGRVTPEDVEEIVEEL 77 (77)
T ss_pred ccCCCEEEEe-CCCeEEccCCHHHHHHHHHhC
Confidence 6555555555 77888888776 888888753
No 55
>PLN03194 putative disease resistance protein; Provisional
Probab=33.63 E-value=2.1e+02 Score=23.20 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=20.3
Q ss_pred cCCcceeeEeecCCCCcccccchhHHHHHHH
Q 028641 38 LCDAEVAVIIFSPRGKLSEFASSSMQETIER 68 (206)
Q Consensus 38 LCda~valivfsp~gkl~~f~s~s~~~ii~R 68 (206)
.=.+.++|+||||+=--..||-..+..|+++
T Consensus 78 IeeSri~IvVfS~~Ya~S~WCLdEL~~I~e~ 108 (187)
T PLN03194 78 IRNCKVGVAVFSPRYCESYFCLHELALIMES 108 (187)
T ss_pred HHhCeEEEEEECCCcccchhHHHHHHHHHHc
Confidence 3467899999999733333555566666654
No 56
>PRK09458 pspB phage shock protein B; Provisional
Probab=33.55 E-value=86 Score=21.54 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 028641 85 QNMQHLKHEAANMVKKIELLEVS 107 (206)
Q Consensus 85 ~~~q~lk~e~~~L~kkie~le~~ 107 (206)
+.++.|-....+|+++|+.||.-
T Consensus 42 ~~L~~L~~~A~rm~~RI~tLE~I 64 (75)
T PRK09458 42 QRLAQLTEKAERMRERIQALEAI 64 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667778899999999998853
No 57
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=33.13 E-value=1.7e+02 Score=20.32 Aligned_cols=33 Identities=27% Similarity=0.575 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028641 119 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEK 156 (206)
Q Consensus 119 ls~~EL~~Le~~Le~~L~~Ir~rK~qL~~eqi~~Lk~k 156 (206)
+|++=|.+||..+..++..| .|+.=+|+.||+|
T Consensus 1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKek 33 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEK 33 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 35555666666666666554 2444455555553
No 58
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=32.97 E-value=4.3e+02 Score=28.21 Aligned_cols=109 Identities=20% Similarity=0.365 Sum_probs=0.0
Q ss_pred eEeecCCCCcccccchhHHHHHHHHhhhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHH-----------------
Q 028641 45 VIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVS----------------- 107 (206)
Q Consensus 45 livfsp~gkl~~f~s~s~~~ii~RY~~~~~~~~~~~~~~~~~~q~lk~e~~~L~kkie~le~~----------------- 107 (206)
+++|.++|++..| .++.+||..|..+--.--.+.. +..+..++.++..|..++.-....
T Consensus 963 m~~~d~~g~i~~~--~~~~~Il~~f~~~Rl~~y~kR~--~~~l~~l~~~~~~l~~~~rFI~~vi~~~i~i~~~~k~~l~~ 1038 (1388)
T PTZ00108 963 MVLFDENGKIKKY--SDALDILKEFYLVRLDLYKKRK--EYLLGKLERELARLSNKVRFIKHVINGELVITNAKKKDLVK 1038 (1388)
T ss_pred EEEEeCCCCccee--CCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhCeeEEccCCHHHHHH
Q ss_pred -------------------------------------------------hhHhhCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028641 108 -------------------------------------------------KRKLLGEGLASCTLEELQQIERQLEKSVSNI 138 (206)
Q Consensus 108 -------------------------------------------------~r~l~ge~L~~ls~~EL~~Le~~Le~~L~~I 138 (206)
--.|++-.|.+|+.++...|..+++.....+
T Consensus 1039 ~L~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~sLT~e~v~kL~~e~~~~~~e~ 1118 (1388)
T PTZ00108 1039 ELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAELEKKEKEL 1118 (1388)
T ss_pred HHHHcCCCccchhhhhcccccccccccccccccccccccccccccchhhhHHHhcCCHHhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH----HHHHHHHHHHHHHHh
Q 028641 139 RARK----NQVFNEQIAQLKEKC 157 (206)
Q Consensus 139 r~rK----~qL~~eqi~~Lk~k~ 157 (206)
..=+ .+|+.+.++.+.+++
T Consensus 1119 ~~L~~~t~~~lw~~DL~~~~~~~ 1141 (1388)
T PTZ00108 1119 EKLKNTTPKDMWLEDLDKFEEAL 1141 (1388)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHH
No 59
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=31.96 E-value=17 Score=27.48 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=28.8
Q ss_pred ecCCCCcceeccccccchhhhhhhhhccCCcceeeEeecCCCCcccc
Q 028641 11 IENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEF 57 (206)
Q Consensus 11 Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~valivfsp~gkl~~f 57 (206)
|.++.....||-=.-+-+.++.-+|+.+| ++.|+|.|+-|-.
T Consensus 41 v~~k~~ytktF~V~vaN~s~~~idLsk~C-----f~a~~~~gk~f~l 82 (124)
T PF14263_consen 41 VGGKSFYTKTFDVTVANLSDKDIDLSKMC-----FKAYSPDGKEFKL 82 (124)
T ss_dssp ETTEEEEEEEEEEEEEE-SSS-EE-TT-E-----EEEEETTS-EEEE
T ss_pred ecCccceEEEEEEEEecCCCCccccccch-----hhhccccCCEEEe
Confidence 45556667778888888889999999885 8999999986643
No 60
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=30.31 E-value=4.5e+02 Score=24.38 Aligned_cols=29 Identities=10% Similarity=0.022 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028641 117 ASCTLEELQQIERQLEKSVSNIRARKNQV 145 (206)
Q Consensus 117 ~~ls~~EL~~Le~~Le~~L~~Ir~rK~qL 145 (206)
+..++.++.++-..+...+..++.+...+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (525)
T TIGR02231 122 NEPDLKEWFQAFDFNGSEIERLLTEDREA 150 (525)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999888888888888777554
No 61
>KOG3718 consensus Carnitine O-acyltransferase CROT [Lipid transport and metabolism]
Probab=30.08 E-value=97 Score=28.95 Aligned_cols=29 Identities=28% Similarity=0.482 Sum_probs=23.9
Q ss_pred ecCCCCcccccchhHHHHHHHHhhhcccc
Q 028641 48 FSPRGKLSEFASSSMQETIERYLKHTKDT 76 (206)
Q Consensus 48 fsp~gkl~~f~s~s~~~ii~RY~~~~~~~ 76 (206)
||-...|++.|=|+++++|+||.....+-
T Consensus 14 Fs~qdsLPSLPlPeLeETleKYl~s~~pf 42 (609)
T KOG3718|consen 14 FSFQDSLPSLPLPELEETLEKYLSSIQPF 42 (609)
T ss_pred ccccccCCCCCCchHHHHHHHHHHhcccC
Confidence 66777788888899999999999876554
No 62
>PF11232 Med25: Mediator complex subunit 25 PTOV activation and synapsin 2; InterPro: IPR021394 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-active part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain, an SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This family is the combined PTOV and SD2 domains. the PTOV domain being the domain through which Med25 co-operates with the histone acetyltransferase CBP, but the function of the SD2 domain is unclear []. ; PDB: 2KY6_A 2L23_A 2XNF_A 2L6U_A.
Probab=29.52 E-value=66 Score=25.16 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=18.5
Q ss_pred ccCCcceeeEeecCCCCccc-ccc
Q 028641 37 VLCDAEVAVIIFSPRGKLSE-FAS 59 (206)
Q Consensus 37 vLCda~valivfsp~gkl~~-f~s 59 (206)
.-|++.|-+++|||+.+.|- |..
T Consensus 109 p~c~iKvL~LlYs~kk~~flG~IP 132 (152)
T PF11232_consen 109 PPCEIKVLMLLYSPKKKAFLGFIP 132 (152)
T ss_dssp SSSS-SEEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEEEEcCCCceEEEEcC
Confidence 67999999999999988775 654
No 63
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=29.39 E-value=3.3e+02 Score=22.71 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=27.0
Q ss_pred hCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028641 112 LGEGLASCTLEELQQIERQLEKSVSNIRARK 142 (206)
Q Consensus 112 ~ge~L~~ls~~EL~~Le~~Le~~L~~Ir~rK 142 (206)
+|.+..+++..+|...-...+.-|..||.|-
T Consensus 113 l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~ 143 (264)
T PF06008_consen 113 LNENGDQLPSEDLQRALAEAQRMLEEMRKRD 143 (264)
T ss_pred hCcccCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 3557788999999999999999999999984
No 64
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=28.85 E-value=1.5e+02 Score=26.96 Aligned_cols=63 Identities=21% Similarity=0.370 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028641 87 MQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQ----LEKSVSNIRARKNQVFNEQIAQLKEKCG 158 (206)
Q Consensus 87 ~q~lk~e~~~L~kkie~le~~~r~l~ge~L~~ls~~EL~~Le~~----Le~~L~~Ir~rK~qL~~eqi~~Lk~k~~ 158 (206)
++.+++.+.++.++|...+...- + ++.|--.|-.. =-..++.+-+||+|-....|.+|++|..
T Consensus 6 ~~~l~~Ki~~~~eqi~~e~~~rd----~-----nv~eyLkl~~~aDk~Q~~rIkq~FekkNqksa~~i~~lqkkL~ 72 (395)
T PF10267_consen 6 IDHLQQKILKLKEQIKVEQTARD----E-----NVAEYLKLASNADKQQAARIKQVFEKKNQKSAQTIAQLQKKLE 72 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----h-----hHHHHHHHhhhccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45677777777777765543321 1 12222222211 1245788999999999999999999643
No 65
>PHA00728 hypothetical protein
Probab=28.81 E-value=85 Score=23.64 Aligned_cols=40 Identities=33% Similarity=0.358 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHH
Q 028641 85 QNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIER 129 (206)
Q Consensus 85 ~~~q~lk~e~~~L~kkie~le~~~r~l~ge~L~~ls~~EL~~Le~ 129 (206)
..+++|+.+.+.|++++..|++..-.-. .-.-++|+++|+
T Consensus 5 teveql~keneelkkkla~leal~nn~~-----~~~~e~lqEiEn 44 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELEALMNNES-----AEEDEELQEIEN 44 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHcCCC-----chhhhhHHHhcC
Confidence 3577889999999999988886432211 112455666654
No 66
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=28.73 E-value=60 Score=25.93 Aligned_cols=19 Identities=42% Similarity=0.622 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028641 122 EELQQIERQLEKSVSNIRA 140 (206)
Q Consensus 122 ~EL~~Le~~Le~~L~~Ir~ 140 (206)
.||++||.||++.+..|++
T Consensus 159 qElqELE~QL~DRl~~l~e 177 (179)
T PF14723_consen 159 QELQELEFQLEDRLLQLRE 177 (179)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3456677777777666654
No 67
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=28.28 E-value=2.4e+02 Score=25.91 Aligned_cols=43 Identities=7% Similarity=0.186 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028641 92 HEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIR 139 (206)
Q Consensus 92 ~e~~~L~kkie~le~~~r~l~ge~L~~ls~~EL~~Le~~Le~~L~~Ir 139 (206)
..+..|..+|+.|+.... -.+.+ + -+|+..|+..++.....|-
T Consensus 80 ~pi~ele~ki~el~~~~~-~~~~~---~-~~ei~~l~~~~~~~~~~i~ 122 (431)
T PLN03230 80 KPIVDLENRIDEVRELAN-KTGVD---F-SAQIAELEERYDQVRRELY 122 (431)
T ss_pred hHHHHHHHHHHHHHhhhh-ccccc---H-HHHHHHHHHHHHHHHHHHH
Confidence 446667777766653211 11111 2 2566666666555544443
No 68
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=27.77 E-value=2e+02 Score=19.65 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028641 87 MQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQV 145 (206)
Q Consensus 87 ~q~lk~e~~~L~kkie~le~~~r~l~ge~L~~ls~~EL~~Le~~Le~~L~~Ir~rK~qL 145 (206)
+..++.|+.-|+.+...|....+.+. .+.+...=..|+..|+..+..+..+-.|+
T Consensus 19 l~~LqDE~~hm~~e~~~L~~~~~~~d----~s~~~~~R~~L~~~l~~lv~~mE~K~dQI 73 (79)
T PF06657_consen 19 LKALQDEFGHMKMEHQELQDEYKQMD----PSLGRRKRRDLEQELEELVKRMEAKADQI 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc----cccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544333332 35678888899999999999988886544
No 69
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=27.70 E-value=39 Score=25.95 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=20.0
Q ss_pred hhccCCcceeeEeecCCCCcccccc
Q 028641 35 LSVLCDAEVAVIIFSPRGKLSEFAS 59 (206)
Q Consensus 35 LsvLCda~valivfsp~gkl~~f~s 59 (206)
+.++|||||-++|-+.+.+-..||.
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f~p 83 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRFPP 83 (148)
T ss_pred HHHhhccceeeeeecccCccccCCc
Confidence 5789999999999998876555543
No 70
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=27.48 E-value=1.7e+02 Score=22.30 Aligned_cols=52 Identities=23% Similarity=0.317 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhC--CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028641 89 HLKHEAANMVKKIELLEVSKRKLLG--EGLASCTLEELQQIERQLEKSVSNIRA 140 (206)
Q Consensus 89 ~lk~e~~~L~kkie~le~~~r~l~g--e~L~~ls~~EL~~Le~~Le~~L~~Ir~ 140 (206)
+|..++..++.+++.+...-+..+. .-.+.||++.|..+-.+|+.--+.+-.
T Consensus 19 QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llkqLEkeK~~Le~ 72 (129)
T PF15372_consen 19 QLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLKQLEKEKRSLEN 72 (129)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666555544322111111 123778999999999999876655443
No 71
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=27.16 E-value=21 Score=31.83 Aligned_cols=39 Identities=38% Similarity=0.481 Sum_probs=0.0
Q ss_pred ccchhhhhhhhhccCCcceee-EeecCCCCcccccchhHH
Q 028641 25 RNGLLKKAFELSVLCDAEVAV-IIFSPRGKLSEFASSSMQ 63 (206)
Q Consensus 25 r~GL~KKA~ELsvLCda~val-ivfsp~gkl~~f~s~s~~ 63 (206)
-.||+|=++=..-+|+|.-.+ -+.+..||+-+|+|+++.
T Consensus 53 qd~ilkym~~~m~~~n~~gfvy~~~~~~~k~~~~~s~slr 92 (354)
T PF04873_consen 53 QDGILKYMFPEMELCNAPGFVYTIISSSGKPVEGVSPSLR 92 (354)
T ss_dssp ----------------------------------------
T ss_pred hhHHHHhhccccccccCceeeecCCCCCCCccCCcCCccc
Confidence 357777778889999999998 788889999999999887
No 72
>PRK02759 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed
Probab=27.07 E-value=1.3e+02 Score=24.76 Aligned_cols=37 Identities=27% Similarity=0.606 Sum_probs=29.1
Q ss_pred Cccee-ccccccchhhhh---------hhhhccCCcceeeEeecCCC
Q 028641 16 SRQVT-FSKRRNGLLKKA---------FELSVLCDAEVAVIIFSPRG 52 (206)
Q Consensus 16 ~RqvT-fsKRr~GL~KKA---------~ELsvLCda~valivfsp~g 52 (206)
...+| ||+-|++|-.|- .++.+-||.|.-|+..-|.|
T Consensus 46 tg~~~~~SRSr~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G 92 (203)
T PRK02759 46 TGEVTFFSRSKQRLWTKGETSGNTQKVVSIRLDCDNDTLLVLVEPIG 92 (203)
T ss_pred cCcEEEEeCCCCcccCCCCCCCCeEEEEEEEecCCCCeEEEEEEecC
Confidence 34555 577788886664 68899999999999998876
No 73
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=27.07 E-value=58 Score=21.86 Aligned_cols=28 Identities=14% Similarity=0.319 Sum_probs=21.0
Q ss_pred CCcceeeEeecCCCCcccccch-hHHHHHHHH
Q 028641 39 CDAEVAVIIFSPRGKLSEFASS-SMQETIERY 69 (206)
Q Consensus 39 Cda~valivfsp~gkl~~f~s~-s~~~ii~RY 69 (206)
|+--.+++| +|..|...++ .+.+|++.|
T Consensus 52 C~~gP~v~v---~g~~y~~vt~~~i~~i~~~~ 80 (80)
T cd03064 52 CDLAPVMMI---NDDVYGRLTPEKVDAILEAL 80 (80)
T ss_pred CCCCCEEEE---CCEEECCCCHHHHHHHHHhC
Confidence 776666666 3788888876 888888764
No 74
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=27.01 E-value=4.4e+02 Score=27.18 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 028641 84 EQNMQHLKHEAANMVKKIELLEVS 107 (206)
Q Consensus 84 ~~~~q~lk~e~~~L~kkie~le~~ 107 (206)
++.++.++.++..+++++-.++..
T Consensus 660 d~~ie~le~e~~~l~~~~~~l~~~ 683 (1074)
T KOG0250|consen 660 DDEIEDLEREASRLQKEILELENQ 683 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777777777777766555443
No 75
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=26.70 E-value=1.8e+02 Score=25.15 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=30.6
Q ss_pred cceeecCCCCcceeccccccchhhhhhhhhccCCcceeeEeecCCCCcccccc-hhHHHHHHHHhh
Q 028641 7 QMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS-SSMQETIERYLK 71 (206)
Q Consensus 7 ~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~valivfsp~gkl~~f~s-~s~~~ii~RY~~ 71 (206)
.+..|.|.+.|..+=|+ .||..|.+ ++| .|=+ |.|++|++.|..
T Consensus 25 n~~li~n~tqr~t~~sR-------------~L~Ecel~---~~p-----~Y~nDpEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKSR-------------LLAEIQRP---KNP-----HYHNDPELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccccce-------------ehhhhccc---cCC-----CCCCcHHHHHHHHHHhH
Confidence 35678898888776332 47877765 444 3444 799999999865
No 76
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=26.22 E-value=54 Score=18.48 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=13.8
Q ss_pred ceeeEeecCCCCcccccch
Q 028641 42 EVAVIIFSPRGKLSEFASS 60 (206)
Q Consensus 42 ~valivfsp~gkl~~f~s~ 60 (206)
.-.-..|||+|+-..|++.
T Consensus 10 ~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEE
T ss_pred cccCEEEecCCCEEEEEec
Confidence 4456789999998888763
No 77
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=26.17 E-value=1.3e+02 Score=25.88 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=27.0
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028641 111 LLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFN 147 (206)
Q Consensus 111 l~ge~L~~ls~~EL~~Le~~Le~~L~~Ir~rK~qL~~ 147 (206)
.--+.|.+|+++||.+|-..|-..+..|-+-=.+.+.
T Consensus 211 ~SrEeL~~Mt~~EL~qL~~~L~~qIq~vfeeLt~~vQ 247 (285)
T PF06937_consen 211 YSREELNSMTLDELKQLNEKLLQQIQDVFEELTQQVQ 247 (285)
T ss_pred cCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447889999999999988887777666655444443
No 78
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=25.69 E-value=2.1e+02 Score=23.77 Aligned_cols=92 Identities=21% Similarity=0.351 Sum_probs=40.8
Q ss_pred hHHHHHHHHhhhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028641 61 SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRA 140 (206)
Q Consensus 61 s~~~ii~RY~~~~~~~~~~~~~~~~~~q~lk~e~~~L~kkie~le~~~r~l~ge~L~~ls~~EL~~Le~~Le~~L~~Ir~ 140 (206)
++.++..+-.......+..........+.+..++..+.++++.++...+++-. -++ ---.++.+|+.+++. +..++.
T Consensus 25 ~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~-~v~-~q~~el~~L~~qi~~-~~~~~~ 101 (251)
T PF11932_consen 25 QAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLER-QVA-SQEQELASLEQQIEQ-IEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHH-HHHHHH
Confidence 55555555544333222111111223344556666666666666655444321 000 002233334443332 334444
Q ss_pred HHHHHHHHHHHHHHH
Q 028641 141 RKNQVFNEQIAQLKE 155 (206)
Q Consensus 141 rK~qL~~eqi~~Lk~ 155 (206)
.-.-+|.+-++.|+.
T Consensus 102 ~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 102 ELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444456667777766
No 79
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=25.57 E-value=5.3e+02 Score=23.73 Aligned_cols=30 Identities=13% Similarity=0.271 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028641 126 QIERQLEKSVSNIRARKNQVFNEQIAQLKE 155 (206)
Q Consensus 126 ~Le~~Le~~L~~Ir~rK~qL~~eqi~~Lk~ 155 (206)
.=+..|...|...+.+|.++..+.-...++
T Consensus 204 ~~~~~l~~~l~e~~~~~~~~~e~~~~~~~e 233 (447)
T KOG2751|consen 204 KEEAELDHQLKELEFKAERLNEEEDQYWRE 233 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666777777777776655555444
No 80
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=25.49 E-value=1.4e+02 Score=17.01 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028641 123 ELQQIERQLEKSVSNIRARKNQVFNEQIAQLKE 155 (206)
Q Consensus 123 EL~~Le~~Le~~L~~Ir~rK~qL~~eqi~~Lk~ 155 (206)
.+.+|+..+..+...-+=-+...+.++|..|+.
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 355666666666666666666667777777664
No 81
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=25.25 E-value=42 Score=27.84 Aligned_cols=18 Identities=33% Similarity=0.648 Sum_probs=15.1
Q ss_pred CCcceeeEeecCCCCccc
Q 028641 39 CDAEVAVIIFSPRGKLSE 56 (206)
Q Consensus 39 Cda~valivfsp~gkl~~ 56 (206)
.|-|--+.||||.|+||.
T Consensus 7 agfDrhitIFspeGrLyQ 24 (246)
T KOG0182|consen 7 AGFDRHITIFSPEGRLYQ 24 (246)
T ss_pred CCccceEEEECCCceEEe
Confidence 456777899999999986
No 82
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=24.64 E-value=1.4e+02 Score=18.79 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=19.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028641 116 LASCTLEELQQIERQLEKSVSNIRARK 142 (206)
Q Consensus 116 L~~ls~~EL~~Le~~Le~~L~~Ir~rK 142 (206)
+-++|.+||.+....+...|-..|-.+
T Consensus 2 lr~~s~~EL~~~l~~lr~eLf~Lr~~~ 28 (55)
T TIGR00012 2 LREKSKEELAKKLDELKKELFELRFQK 28 (55)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888887777777777776443
No 83
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=24.55 E-value=1.2e+02 Score=20.11 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028641 97 MVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNI 138 (206)
Q Consensus 97 L~kkie~le~~~r~l~ge~L~~ls~~EL~~Le~~Le~~L~~I 138 (206)
++++++.++-..-.+..+-+.+-+.++|.+++..+++.-+.+
T Consensus 23 lr~eiealkY~N~yL~~~~v~~~g~~gl~~~~~e~~r~~~~~ 64 (66)
T PF07438_consen 23 LRKEIEALKYMNDYLFDQFVRDNGYEGLEEYEIEIERIKKDF 64 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh
Confidence 344455544333333334444556778888888777655443
No 84
>PRK11546 zraP zinc resistance protein; Provisional
Probab=23.53 E-value=2.4e+02 Score=21.83 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=9.4
Q ss_pred hHHHHHHHHhhhcc
Q 028641 61 SMQETIERYLKHTK 74 (206)
Q Consensus 61 s~~~ii~RY~~~~~ 74 (206)
.+++|.++|..-+.
T Consensus 51 ~~q~I~~~f~~~t~ 64 (143)
T PRK11546 51 AWQKIHNDFYAQTS 64 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 47777788876443
No 85
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=23.49 E-value=3.8e+02 Score=22.84 Aligned_cols=16 Identities=6% Similarity=0.129 Sum_probs=12.2
Q ss_pred hhHHHHHHHHhhhccc
Q 028641 60 SSMQETIERYLKHTKD 75 (206)
Q Consensus 60 ~s~~~ii~RY~~~~~~ 75 (206)
..|...+.+|..+...
T Consensus 38 ~~Vr~lLqqy~~~~~~ 53 (258)
T PF15397_consen 38 LKVRKLLQQYDIYRTA 53 (258)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3788899888876654
No 86
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.28 E-value=3.8e+02 Score=21.18 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHh
Q 028641 87 MQHLKHEAANMVKKIELLEVSKRKL 111 (206)
Q Consensus 87 ~q~lk~e~~~L~kkie~le~~~r~l 111 (206)
.+.++.++..|+.+++.|+.....+
T Consensus 106 ~~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666777777777766554433
No 87
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=22.90 E-value=3.3e+02 Score=24.29 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 028641 84 EQNMQHLKHEAANMVKKIELLEV 106 (206)
Q Consensus 84 ~~~~q~lk~e~~~L~kkie~le~ 106 (206)
.+.++.|+.|+..|..+++....
T Consensus 93 ~~kl~RL~~Ev~EL~eEl~~~~~ 115 (388)
T PF04912_consen 93 EQKLQRLRREVEELKEELEKRKA 115 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455677777777777766543
No 88
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=22.84 E-value=25 Score=22.26 Aligned_cols=32 Identities=19% Similarity=0.438 Sum_probs=21.9
Q ss_pred eeeEeecCCCCcccccchhHHHHHHHHhhhcccc
Q 028641 43 VAVIIFSPRGKLSEFASSSMQETIERYLKHTKDT 76 (206)
Q Consensus 43 valivfsp~gkl~~f~s~s~~~ii~RY~~~~~~~ 76 (206)
|++|||+|. |+++.+. ++-..+..|++...+.
T Consensus 14 i~llvFGp~-KLP~l~r-~lG~~i~~Fk~~~~~~ 45 (51)
T PRK01470 14 IIFVLFGAG-KLPQVMS-DLAKGLKAFKDGMKDD 45 (51)
T ss_pred HHHHhcCch-HhHHHHH-HHHHHHHHHHHHhccc
Confidence 789999994 8887654 4445666777655443
No 89
>COG1422 Predicted membrane protein [Function unknown]
Probab=22.71 E-value=4.2e+02 Score=21.69 Aligned_cols=25 Identities=12% Similarity=0.326 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028641 132 EKSVSNIRARKNQVFNEQIAQLKEK 156 (206)
Q Consensus 132 e~~L~~Ir~rK~qL~~eqi~~Lk~k 156 (206)
+..|+++++.+.+++.+|-+-.+..
T Consensus 97 ~~~lkkLq~~qmem~~~Q~elmk~q 121 (201)
T COG1422 97 MKKLKKLQEKQMEMMDDQRELMKMQ 121 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777777888888888877774
No 90
>PHA02123 hypothetical protein
Probab=22.62 E-value=43 Score=24.78 Aligned_cols=19 Identities=42% Similarity=0.726 Sum_probs=14.7
Q ss_pred hhhhccCCcce------ee-EeecCC
Q 028641 33 FELSVLCDAEV------AV-IIFSPR 51 (206)
Q Consensus 33 ~ELsvLCda~v------al-ivfsp~ 51 (206)
+-||+.||-++ || |||.++
T Consensus 51 sals~scd~~~~~~~d~clgiifnsd 76 (146)
T PHA02123 51 SALSASCDREVREQYDNCLGIVFNSD 76 (146)
T ss_pred ehhcccccHHHHhhcCceEEEEecCc
Confidence 45899999887 55 788775
No 91
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=22.53 E-value=1.7e+02 Score=18.81 Aligned_cols=25 Identities=20% Similarity=0.415 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHh
Q 028641 87 MQHLKHEAANMVKKIELLEVSKRKL 111 (206)
Q Consensus 87 ~q~lk~e~~~L~kkie~le~~~r~l 111 (206)
+..++.+...+++.++.++...+.+
T Consensus 16 i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666554443
No 92
>PRK00051 hisI phosphoribosyl-AMP cyclohydrolase; Reviewed
Probab=22.48 E-value=55 Score=24.73 Aligned_cols=37 Identities=22% Similarity=0.486 Sum_probs=28.9
Q ss_pred Cccee-ccccccchhhhh---------hhhhccCCcceeeEeecCCC
Q 028641 16 SRQVT-FSKRRNGLLKKA---------FELSVLCDAEVAVIIFSPRG 52 (206)
Q Consensus 16 ~RqvT-fsKRr~GL~KKA---------~ELsvLCda~valivfsp~g 52 (206)
.+.++ ||+-|++|-.|- .|+.+-||.|.-|+...+.|
T Consensus 44 tg~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~Ll~~V~q~G 90 (125)
T PRK00051 44 TGRAHYWSRSRQKLWRKGETSGHVQKVHEVRLDCDGDAVLLKVEQVG 90 (125)
T ss_pred cCcEEEEeCccCcccCCCCCcCCeEEEEEEEecCCCCEEEEEEEecC
Confidence 34455 577788886654 58999999999999998887
No 93
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=22.21 E-value=33 Score=28.09 Aligned_cols=17 Identities=41% Similarity=0.770 Sum_probs=13.2
Q ss_pred eeEeecCCCCccc--ccch
Q 028641 44 AVIIFSPRGKLSE--FASS 60 (206)
Q Consensus 44 alivfsp~gkl~~--f~s~ 60 (206)
.+-+|||+|++|. |+..
T Consensus 4 ~~t~fsp~Grl~QveyA~~ 22 (227)
T cd03750 4 SLTTFSPSGKLVQIEYALA 22 (227)
T ss_pred CCceECCCCeEhHHHHHHH
Confidence 4568999999985 7654
No 94
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=22.20 E-value=28 Score=22.87 Aligned_cols=31 Identities=35% Similarity=0.568 Sum_probs=22.0
Q ss_pred cccccchhhhhhhhhccCC-cceeeEeecCCCCc
Q 028641 22 SKRRNGLLKKAFELSVLCD-AEVAVIIFSPRGKL 54 (206)
Q Consensus 22 sKRr~GL~KKA~ELsvLCd-a~valivfsp~gkl 54 (206)
..||.|.+-+ |.|+-+| .+=.+-||+..|++
T Consensus 23 ~~RR~g~i~~--~vsi~~~~~~~ei~I~tD~GR~ 54 (63)
T PF04566_consen 23 NLRRSGKISK--EVSIVYDIREKEIRINTDAGRL 54 (63)
T ss_dssp HHHHTTSS-T--TSEEEEETTTTEEEEE-SSCEE
T ss_pred HHhhccCCcc--eeEEEEeccCCEEEEEccCCcc
Confidence 4688886655 8888886 46688899998875
No 95
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=22.00 E-value=1.8e+02 Score=22.12 Aligned_cols=36 Identities=11% Similarity=0.184 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHH
Q 028641 87 MQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLE 122 (206)
Q Consensus 87 ~q~lk~e~~~L~kkie~le~~~r~l~ge~L~~ls~~ 122 (206)
+..|+.++++.++.+..+..+.+++.|-|.++.-.-
T Consensus 5 v~~Lq~qlE~Ake~Lk~vDenIkKltGRDp~e~rp~ 40 (134)
T PF04697_consen 5 VRTLQAQLEKAKESLKNVDENIKKLTGRDPSENRPG 40 (134)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhCCCccccCcc
Confidence 445788888888889899999999999886655433
No 96
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=21.95 E-value=64 Score=19.45 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=15.9
Q ss_pred CCcce---eeEeecCCCCcccccchh
Q 028641 39 CDAEV---AVIIFSPRGKLSEFASSS 61 (206)
Q Consensus 39 Cda~v---alivfsp~gkl~~f~s~s 61 (206)
||..| +-.-..-+|+.|-|+|..
T Consensus 6 cg~~v~~~~~~~~~y~G~~Y~FCS~~ 31 (47)
T PF04945_consen 6 CGMKVPGNAAYSVEYNGRTYYFCSEG 31 (47)
T ss_dssp GG-BE-----EEEEETTEEEEESSHH
T ss_pred CCCEEccCccEEEEECCEEEEEcCHH
Confidence 66677 556666789999999973
No 97
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=21.93 E-value=7.6e+02 Score=24.20 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHhc
Q 028641 129 RQLEKSVSNIRARKNQVFN--EQIAQLKEKCG 158 (206)
Q Consensus 129 ~~Le~~L~~Ir~rK~qL~~--eqi~~Lk~k~~ 158 (206)
..|.++.+.+.....++.. .+|..||.|+.
T Consensus 622 saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554 48888999876
No 98
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=21.73 E-value=4.5e+02 Score=21.48 Aligned_cols=75 Identities=25% Similarity=0.291 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcccC
Q 028641 84 EQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQ--VFNEQIAQLKEKCGMEN 161 (206)
Q Consensus 84 ~~~~q~lk~e~~~L~kkie~le~~~r~l~ge~L~~ls~~EL~~Le~~Le~~L~~Ir~rK~q--L~~eqi~~Lk~k~~~~~ 161 (206)
+.....+..++..++++|+.+....+..--+- ..+|..|+..-...+.++-+--.. -+..+|..|+++.....
T Consensus 142 e~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~-----~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 142 EAMLKRLEKELAKLKKEIEEVNRERKRRQEEA-----GEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred CC
Q 028641 162 WQ 163 (206)
Q Consensus 162 ~~ 163 (206)
++
T Consensus 217 ~~ 218 (221)
T PF05700_consen 217 EN 218 (221)
T ss_pred cc
No 99
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=21.36 E-value=3e+02 Score=21.96 Aligned_cols=62 Identities=21% Similarity=0.258 Sum_probs=33.8
Q ss_pred cceeeEee--cCCCCcccccc---------h-hHHHHHHHHhhhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 028641 41 AEVAVIIF--SPRGKLSEFAS---------S-SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSK 108 (206)
Q Consensus 41 a~valivf--sp~gkl~~f~s---------~-s~~~ii~RY~~~~~~~~~~~~~~~~~~q~lk~e~~~L~kkie~le~~~ 108 (206)
+|++||+. ||+||=|..-+ . ++..++.||....... +..+..+.....++.++..+....
T Consensus 96 veaGLI~rrDS~NgkRy~~R~~~G~I~~A~GfdLsPL~~R~~El~~~a--------~~~~~~~~~~r~lr~~it~~rR~i 167 (177)
T PF03428_consen 96 VEAGLIVRRDSPNGKRYARRDRGGRIVEAFGFDLSPLIARAEELAALA--------EAARAERRALRRLRRRITLLRRDI 167 (177)
T ss_pred HHCCCeeeccCCCCCccCccCCCCCEEeEeCcCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778887 58888765321 1 5677888887654321 122233344445555555544443
Q ss_pred hH
Q 028641 109 RK 110 (206)
Q Consensus 109 r~ 110 (206)
++
T Consensus 168 ~~ 169 (177)
T PF03428_consen 168 RK 169 (177)
T ss_pred HH
Confidence 33
No 100
>cd04768 HTH_BmrR-like Helix-Turn-Helix DNA binding domain of BmrR-like transcription regulators. Helix-turn-helix (HTH) BmrR-like transcription regulators (TipAL, Mta, SkgA, BmrR, and BltR), N-terminal domain. These proteins have been shown to regulate expression of specific regulons in response to various toxic substances, antibiotics, or oxygen radicals in Bacillus subtilis, Streptomyces, and Caulobacter crescentus. They are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=21.30 E-value=2.6e+02 Score=19.52 Aligned_cols=11 Identities=18% Similarity=0.425 Sum_probs=5.9
Q ss_pred CCHHHHHHHHH
Q 028641 119 CTLEELQQIER 129 (206)
Q Consensus 119 ls~~EL~~Le~ 129 (206)
+|++++.++-.
T Consensus 58 ~~l~~I~~~l~ 68 (96)
T cd04768 58 FSLAEIKELLD 68 (96)
T ss_pred CCHHHHHHHHh
Confidence 55555555543
No 101
>PTZ00246 proteasome subunit alpha; Provisional
Probab=21.26 E-value=35 Score=28.45 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=15.9
Q ss_pred CcceeeEeecCCCCccc--ccchh
Q 028641 40 DAEVAVIIFSPRGKLSE--FASSS 61 (206)
Q Consensus 40 da~valivfsp~gkl~~--f~s~s 61 (206)
+-|-.+-+|||+|++|. |+...
T Consensus 4 ~yd~~~~~fsp~Grl~QvEYA~~a 27 (253)
T PTZ00246 4 RYDSRTTTFSPEGRLYQVEYALEA 27 (253)
T ss_pred ccCCCCceECCCCEEhHHHHHHHH
Confidence 34555678999999985 76543
No 102
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=21.17 E-value=2.2e+02 Score=19.82 Aligned_cols=12 Identities=17% Similarity=0.238 Sum_probs=7.3
Q ss_pred CCCHHHHHHHHH
Q 028641 118 SCTLEELQQIER 129 (206)
Q Consensus 118 ~ls~~EL~~Le~ 129 (206)
+++++|+..+-.
T Consensus 57 G~~l~eI~~~l~ 68 (96)
T cd04788 57 GFSLREIGRALD 68 (96)
T ss_pred CCCHHHHHHHHh
Confidence 356667666644
No 103
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=21.16 E-value=1.3e+02 Score=21.50 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028641 121 LEELQQIERQLEKSVSNIRARKN 143 (206)
Q Consensus 121 ~~EL~~Le~~Le~~L~~Ir~rK~ 143 (206)
-.||+++|++-...|..|+.+-.
T Consensus 27 E~EL~~~Eq~~q~Wl~sI~ekd~ 49 (92)
T PF15243_consen 27 ETELQQQEQQHQAWLQSIAEKDN 49 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45789999999999999988754
No 104
>PRK11637 AmiB activator; Provisional
Probab=21.13 E-value=6.1e+02 Score=22.79 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 028641 90 LKHEAANMVKKI 101 (206)
Q Consensus 90 lk~e~~~L~kki 101 (206)
++.++..+.+++
T Consensus 52 l~~qi~~~~~~i 63 (428)
T PRK11637 52 IQQDIAAKEKSV 63 (428)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 105
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=20.88 E-value=39 Score=27.21 Aligned_cols=16 Identities=38% Similarity=0.835 Sum_probs=12.5
Q ss_pred eEeecCCCCccc--ccch
Q 028641 45 VIIFSPRGKLSE--FASS 60 (206)
Q Consensus 45 livfsp~gkl~~--f~s~ 60 (206)
+=+|||+||++. |+..
T Consensus 5 ~~~fsp~Gr~~Qveya~~ 22 (207)
T cd03755 5 ITVFSPDGHLFQVEYAQE 22 (207)
T ss_pred CceECCCCeEeHHHHHHH
Confidence 457999999985 7664
No 106
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=20.69 E-value=1.9e+02 Score=19.26 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028641 121 LEELQQIERQLEKSVSNIRARKNQV 145 (206)
Q Consensus 121 ~~EL~~Le~~Le~~L~~Ir~rK~qL 145 (206)
..++..++..|......+..||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6688888888888888888888664
No 107
>PRK09039 hypothetical protein; Validated
Probab=20.62 E-value=5.9e+02 Score=22.41 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 028641 85 QNMQHLKHEAANMVKKIELLEVSK 108 (206)
Q Consensus 85 ~~~q~lk~e~~~L~kkie~le~~~ 108 (206)
..+..|+.+++.|+.++..++..+
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L 160 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAAL 160 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777776554
No 108
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=20.60 E-value=2.4e+02 Score=18.37 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhHh
Q 028641 84 EQNMQHLKHEAANMVKKIELLEVSKRKL 111 (206)
Q Consensus 84 ~~~~q~lk~e~~~L~kkie~le~~~r~l 111 (206)
.+.++-|+..+..|..++..|+.....+
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLL 40 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999998888765443
No 109
>PRK10132 hypothetical protein; Provisional
Probab=20.54 E-value=3.5e+02 Score=19.75 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028641 84 EQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKN 143 (206)
Q Consensus 84 ~~~~q~lk~e~~~L~kkie~le~~~r~l~ge~L~~ls~~EL~~Le~~Le~~L~~Ir~rK~ 143 (206)
+.+.+.+..++..|-..++.+= ....+-+-+++.++-..++..|...|++-.
T Consensus 11 ~~q~e~L~~Dl~~L~~~le~ll--------~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~ 62 (108)
T PRK10132 11 DDGVQDIQNDVNQLADSLESVL--------KSWGSDAKGEAEAARRKAQALLKETRARMH 62 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH--------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456667777777765554432 223445678899999999999999987654
No 110
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=20.43 E-value=1.8e+02 Score=21.90 Aligned_cols=11 Identities=0% Similarity=0.039 Sum_probs=6.0
Q ss_pred hhhhccCCcce
Q 028641 33 FELSVLCDAEV 43 (206)
Q Consensus 33 ~ELsvLCda~v 43 (206)
.|+|-++|+-+
T Consensus 4 ge~a~~~gvs~ 14 (135)
T PRK10227 4 SDVAKITGLTS 14 (135)
T ss_pred HHHHHHHCcCH
Confidence 45555555544
No 111
>PLN03237 DNA topoisomerase 2; Provisional
Probab=20.38 E-value=1.1e+03 Score=25.46 Aligned_cols=109 Identities=16% Similarity=0.328 Sum_probs=0.0
Q ss_pred eEeecCCCCcccccchhHHHHHHHHhhhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHH-----------------
Q 028641 45 VIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVS----------------- 107 (206)
Q Consensus 45 livfsp~gkl~~f~s~s~~~ii~RY~~~~~~~~~~~~~~~~~~q~lk~e~~~L~kkie~le~~----------------- 107 (206)
+++|.+.|++..| .++.+||..|..+--.--.... +..+..++.++.++..+...++.-
T Consensus 989 m~l~d~~G~i~k~--~~~~~Il~~F~~~Rl~~Y~kRk--~~~~~~~~~el~k~~~k~~fI~~vi~g~i~i~~k~k~~l~~ 1064 (1465)
T PLN03237 989 MHLFDSKGVIKKY--DTPEQILEEFFHLRLEYYEKRK--EVLLKNLEFELLKLENKVRFILAVVDGEIIVNNRKKADLVE 1064 (1465)
T ss_pred EEEEcCCCCccee--CCHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCceEEccCCHHHHHH
Q ss_pred -----------------------------------------------hhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028641 108 -----------------------------------------------KRKLLGEGLASCTLEELQQIERQLEKSVSNIRA 140 (206)
Q Consensus 108 -----------------------------------------------~r~l~ge~L~~ls~~EL~~Le~~Le~~L~~Ir~ 140 (206)
--.|++-.|.+|+.+....|..+.+.....+..
T Consensus 1065 ~L~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~slT~E~~~kL~~~~~~k~~el~~ 1144 (1465)
T PLN03237 1065 ELRQKGFTPFPKKAKSVEAAVAGATDDAAEEEEEIDVSSSSGVRGSDYDYLLSMAIGTLTLEKVQELCADRDKLNIEVED 1144 (1465)
T ss_pred HHHHcCCCccchhhcccccccccccccccccccccccccccccccccchHHhcCcHhhcCHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH----HHHHHHHHHHHHHHh
Q 028641 141 RK----NQVFNEQIAQLKEKC 157 (206)
Q Consensus 141 rK----~qL~~eqi~~Lk~k~ 157 (206)
=+ .+|+.+.++.|.+.+
T Consensus 1145 l~~~t~~~lW~~DLd~f~~~~ 1165 (1465)
T PLN03237 1145 LKKTTPKSLWLKDLDALEKEL 1165 (1465)
T ss_pred HHcCCHHHHHHHHHHHHHHHH
No 112
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=20.25 E-value=2.1e+02 Score=17.09 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 028641 118 SCTLEELQQIERQLEKSVSN 137 (206)
Q Consensus 118 ~ls~~EL~~Le~~Le~~L~~ 137 (206)
+++-.+.-.+.+.|+..+..
T Consensus 21 ~l~~~~vl~~Sq~LD~lI~~ 40 (45)
T PF09388_consen 21 GLTDPEVLELSQELDKLINE 40 (45)
T ss_dssp CTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 66677888888888887754
Done!