Query 028641
Match_columns 206
No_of_seqs 217 out of 1317
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 00:42:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028641.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028641hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 1.1E-40 3.9E-45 229.9 0.9 74 2-75 1-74 (77)
2 3p57_A Myocyte-specific enhanc 100.0 2.4E-40 8.1E-45 233.8 1.2 78 2-79 1-78 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 2.2E-38 7.7E-43 227.3 -0.4 72 1-72 16-87 (100)
4 1hbx_A SRF, serum response fac 100.0 3.2E-38 1.1E-42 223.7 -1.9 71 1-71 10-80 (92)
5 1k6o_B SRF, serum response fac 100.0 1.4E-37 4.6E-42 224.6 -1.5 69 1-69 9-77 (103)
6 1j1d_C Troponin I, TNI; THIN f 66.9 35 0.0012 25.0 10.4 66 94-159 28-104 (133)
7 2l5g_A GPS2 protein, G protein 61.6 13 0.00044 21.1 3.7 28 120-147 9-36 (38)
8 1j1e_C Troponin I, TNI; THIN f 59.3 59 0.002 25.0 9.4 65 94-158 28-103 (180)
9 3nrf_A APAG protein; structura 59.1 2.1 7E-05 30.3 0.1 42 11-57 21-62 (106)
10 3ghg_A Fibrinogen alpha chain; 46.4 54 0.0018 29.6 7.1 14 129-142 134-147 (562)
11 1m2d_A [2Fe-2S] ferredoxin; th 42.5 14 0.00048 25.7 2.3 32 39-71 59-91 (110)
12 4gfh_A DNA topoisomerase 2; to 41.7 1.3E+02 0.0045 29.8 9.7 47 111-157 1116-1166(1177)
13 2ky6_A Mediator of RNA polymer 41.5 23 0.00079 26.9 3.4 36 36-71 116-159 (166)
14 2xus_A Breast cancer metastasi 41.3 57 0.002 19.6 4.9 31 121-158 12-42 (49)
15 2yy0_A C-MYC-binding protein; 36.4 60 0.0021 19.7 4.2 24 84-107 18-41 (53)
16 2l16_A SEC-independent protein 36.2 4.2 0.00014 27.2 -1.3 30 43-74 16-45 (78)
17 2jee_A YIIU; FTSZ, septum, coi 35.4 98 0.0033 20.6 5.6 20 119-138 3-22 (81)
18 2jo8_A Serine/threonine-protei 32.8 49 0.0017 20.1 3.3 18 116-133 7-24 (51)
19 1ytz_T Troponin T; muscle, THI 30.8 57 0.0019 22.9 3.9 47 114-160 37-89 (107)
20 3hvz_A Uncharacterized protein 30.8 30 0.001 22.8 2.3 25 44-68 7-32 (78)
21 2wuj_A Septum site-determining 30.3 72 0.0025 19.5 3.9 19 87-105 36-54 (57)
22 1j1d_B Troponin T, TNT; THIN f 30.2 1.4E+02 0.0048 20.8 7.9 46 115-160 38-89 (106)
23 3tnu_A Keratin, type I cytoske 29.9 1.5E+02 0.0051 21.1 6.7 62 85-148 45-106 (131)
24 1m1j_C Fibrinogen gamma chain; 29.8 2.7E+02 0.0094 24.0 11.2 22 52-73 13-36 (409)
25 3qx3_A DNA topoisomerase 2-bet 29.7 2.3E+02 0.008 26.8 8.8 49 110-158 722-774 (803)
26 1a93_B MAX protein, coiled coi 29.5 76 0.0026 17.5 3.8 23 88-110 10-32 (34)
27 3tnu_B Keratin, type II cytosk 28.8 1.6E+02 0.0053 20.9 6.9 61 86-148 44-104 (129)
28 4dnd_A Syntaxin-10, SYN10; str 28.6 1.6E+02 0.0056 21.1 9.2 84 61-145 42-128 (130)
29 1go4_E MAD1 (mitotic arrest de 28.4 53 0.0018 22.8 3.3 24 87-110 21-44 (100)
30 3oja_B Anopheles plasmodium-re 27.8 3.1E+02 0.011 24.0 9.7 37 122-158 537-575 (597)
31 1ytz_I Troponin I; muscle, THI 27.2 2.1E+02 0.0073 21.9 8.3 64 94-158 26-100 (182)
32 3h4p_A Proteasome subunit alph 27.1 14 0.00048 30.0 0.2 21 40-60 11-33 (264)
33 3nzj_F Proteasome component C1 26.3 13 0.00045 30.7 -0.2 20 37-56 4-23 (288)
34 3twe_A Alpha4H; unknown functi 25.1 76 0.0026 16.0 3.9 11 92-102 8-18 (27)
35 1g6u_A Domain swapped dimer; d 24.7 1.1E+02 0.0036 17.6 4.8 22 117-138 15-36 (48)
36 1ryp_E 20S proteasome; multica 24.7 14 0.00047 29.3 -0.3 16 44-59 3-20 (242)
37 4dzn_A Coiled-coil peptide CC- 24.6 87 0.003 16.6 3.3 19 87-105 4-22 (33)
38 1ryp_D 20S proteasome; multica 24.6 15 0.00053 29.0 -0.0 17 42-58 3-21 (241)
39 2zvv_Y Cyclin-dependent kinase 24.6 21 0.0007 18.3 0.4 12 15-26 15-26 (26)
40 3jrn_A AT1G72930 protein; TIR 24.3 54 0.0019 25.0 3.0 33 38-70 60-92 (176)
41 2dfs_A Myosin-5A; myosin-V, in 24.0 4.3E+02 0.015 25.8 10.0 11 25-35 923-933 (1080)
42 2l5g_B Putative uncharacterize 23.7 1.1E+02 0.0039 17.6 4.2 25 85-109 9-33 (42)
43 1iru_G 20S proteasome; cell cy 23.4 17 0.00058 29.1 -0.0 21 39-59 5-27 (254)
44 4a17_T RPL24, 60S ribosomal pr 22.9 33 0.0011 25.9 1.5 30 34-63 6-39 (158)
45 1ryp_B 20S proteasome; multica 22.8 18 0.00061 28.9 -0.0 19 41-59 5-25 (250)
46 1iru_B 20S proteasome; cell cy 22.6 18 0.00063 28.4 0.0 18 42-59 6-25 (233)
47 3he5_A Synzip1; heterodimeric 22.5 52 0.0018 19.0 1.9 16 87-102 33-48 (49)
48 3rrk_A V-type ATPase 116 kDa s 22.3 3.1E+02 0.011 22.5 7.8 49 61-109 200-250 (357)
49 2jmk_A Hypothetical protein TA 22.3 77 0.0026 21.8 3.1 33 40-72 63-103 (111)
50 1iru_D 20S proteasome; cell cy 22.1 19 0.00065 28.7 0.0 18 42-59 4-23 (248)
51 1yar_A Proteasome alpha subuni 21.5 21 0.0007 28.1 0.1 18 41-58 8-27 (233)
52 1zke_A Hypothetical protein HP 21.0 1.4E+02 0.0049 19.6 4.1 28 85-112 52-79 (83)
53 2rpa_A Katanin P60 ATPase-cont 20.9 7.9 0.00027 25.8 -2.1 35 29-74 16-50 (78)
54 1zps_A PRA-CH, phosphoribosyl- 20.6 26 0.00088 25.9 0.5 37 17-53 54-100 (138)
55 2aze_A Transcription factor DP 20.4 1.4E+02 0.0047 22.4 4.4 26 120-145 3-28 (155)
56 3uux_B Mitochondrial division 20.4 3.2E+02 0.011 21.9 6.9 20 87-106 151-170 (242)
57 1deq_A Fibrinogen (alpha chain 20.4 2.5E+02 0.0085 24.2 6.6 30 90-119 139-168 (390)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=1.1e-40 Score=229.91 Aligned_cols=74 Identities=47% Similarity=0.760 Sum_probs=70.2
Q ss_pred CcccccceeecCCCCcceeccccccchhhhhhhhhccCCcceeeEeecCCCCcccccchhHHHHHHHHhhhccc
Q 028641 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKD 75 (206)
Q Consensus 2 ~R~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~valivfsp~gkl~~f~s~s~~~ii~RY~~~~~~ 75 (206)
||+||+|++|+|.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|++||+||+.++++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999987654
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=2.4e-40 Score=233.77 Aligned_cols=78 Identities=45% Similarity=0.737 Sum_probs=74.8
Q ss_pred CcccccceeecCCCCcceeccccccchhhhhhhhhccCCcceeeEeecCCCCcccccchhHHHHHHHHhhhcccccCC
Q 028641 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNK 79 (206)
Q Consensus 2 ~R~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~valivfsp~gkl~~f~s~s~~~ii~RY~~~~~~~~~~ 79 (206)
||+||+|++|+|+++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|++||+||+.+++.....
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~~ 78 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESR 78 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCEE
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988766544
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=2.2e-38 Score=227.33 Aligned_cols=72 Identities=38% Similarity=0.591 Sum_probs=70.1
Q ss_pred CCcccccceeecCCCCcceeccccccchhhhhhhhhccCCcceeeEeecCCCCcccccchhHHHHHHHHhhh
Q 028641 1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKH 72 (206)
Q Consensus 1 M~R~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~valivfsp~gkl~~f~s~s~~~ii~RY~~~ 72 (206)
|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+||++..|++||...
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~ 87 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR 87 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999653
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=3.2e-38 Score=223.70 Aligned_cols=71 Identities=37% Similarity=0.508 Sum_probs=68.9
Q ss_pred CCcccccceeecCCCCcceeccccccchhhhhhhhhccCCcceeeEeecCCCCcccccchhHHHHHHHHhh
Q 028641 1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLK 71 (206)
Q Consensus 1 M~R~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~valivfsp~gkl~~f~s~s~~~ii~RY~~ 71 (206)
|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+|+.+|++|..
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G 80 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG 80 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999997753
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=1.4e-37 Score=224.62 Aligned_cols=69 Identities=38% Similarity=0.535 Sum_probs=67.7
Q ss_pred CCcccccceeecCCCCcceeccccccchhhhhhhhhccCCcceeeEeecCCCCcccccchhHHHHHHHH
Q 028641 1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERY 69 (206)
Q Consensus 1 M~R~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~valivfsp~gkl~~f~s~s~~~ii~RY 69 (206)
|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+|+.||+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999874
No 6
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=66.90 E-value=35 Score=25.01 Aligned_cols=66 Identities=24% Similarity=0.273 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhhHhhC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhcc
Q 028641 94 AANMVKKIELLEVSKRKLLG-----EGLASCTLEELQQIERQLEKSVSNIRARKNQVFN------EQIAQLKEKCGM 159 (206)
Q Consensus 94 ~~~L~kkie~le~~~r~l~g-----e~L~~ls~~EL~~Le~~Le~~L~~Ir~rK~qL~~------eqi~~Lk~k~~~ 159 (206)
...|.++-+..++..+.++. -+++++|.++|+++-..|-..+..+.+-|-.+-. -+|+.|..++..
T Consensus 28 ~e~l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~D 104 (133)
T 1j1d_C 28 KQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFD 104 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHH
Confidence 33444444444444444443 4789999999999999999999999988876633 257777777653
No 7
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=61.57 E-value=13 Score=21.11 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028641 120 TLEELQQIERQLEKSVSNIRARKNQVFN 147 (206)
Q Consensus 120 s~~EL~~Le~~Le~~L~~Ir~rK~qL~~ 147 (206)
+++|..+=-.+|+..|...+.-|.|||.
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666777777777665
No 8
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=59.32 E-value=59 Score=25.05 Aligned_cols=65 Identities=25% Similarity=0.292 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHhhHhhC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhc
Q 028641 94 AANMVKKIELLEVSKRKLLG-----EGLASCTLEELQQIERQLEKSVSNIRARKNQVFN------EQIAQLKEKCG 158 (206)
Q Consensus 94 ~~~L~kkie~le~~~r~l~g-----e~L~~ls~~EL~~Le~~Le~~L~~Ir~rK~qL~~------eqi~~Lk~k~~ 158 (206)
...|.++-+..++..+.++. -+++++|.++|+++-..|-..+..+-+-|-.|-. -+|..|..++.
T Consensus 28 ~e~L~~E~e~k~eEKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~ 103 (180)
T 1j1e_C 28 KQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIF 103 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHH
Confidence 33444444444444444443 4789999999999999999999999888776633 25777777544
No 9
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=59.13 E-value=2.1 Score=30.33 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=32.7
Q ss_pred ecCCCCcceeccccccchhhhhhhhhccCCcceeeEeecCCCCcccc
Q 028641 11 IENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEF 57 (206)
Q Consensus 11 Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~valivfsp~gkl~~f 57 (206)
|.+..-...||-=.-.-|.++.-+|+.+| ++.|+|.|+-|-.
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~l 62 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRL 62 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEe
Confidence 34555566777777888999999999776 9999999986544
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=46.40 E-value=54 Score=29.56 Aligned_cols=14 Identities=21% Similarity=0.166 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 028641 129 RQLEKSVSNIRARK 142 (206)
Q Consensus 129 ~~Le~~L~~Ir~rK 142 (206)
..|+..|..+|.+.
T Consensus 134 rvLQsnLedq~~kI 147 (562)
T 3ghg_A 134 QLLQKNVRAQLVDM 147 (562)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 11
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=42.51 E-value=14 Score=25.68 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=23.4
Q ss_pred CCcceeeEeecCCCCcccccch-hHHHHHHHHhh
Q 028641 39 CDAEVAVIIFSPRGKLSEFASS-SMQETIERYLK 71 (206)
Q Consensus 39 Cda~valivfsp~gkl~~f~s~-s~~~ii~RY~~ 71 (206)
|+---.++|+ |+|..|...++ .+.+||+.|..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHH
Confidence 5444455666 88888887776 89999999753
No 12
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=41.65 E-value=1.3e+02 Score=29.82 Aligned_cols=47 Identities=19% Similarity=0.288 Sum_probs=31.4
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Q 028641 111 LLGEGLASCTLEELQQIERQLEKSVSNIRARK----NQVFNEQIAQLKEKC 157 (206)
Q Consensus 111 l~ge~L~~ls~~EL~~Le~~Le~~L~~Ir~rK----~qL~~eqi~~Lk~k~ 157 (206)
+++-.|..|+-++...|..+.+.....|..=+ .+|+.+.++.+.+++
T Consensus 1116 IL~MrL~~LT~ee~ekL~~E~~e~~~ei~~L~~~s~~~lw~~DLd~~~~~~ 1166 (1177)
T 4gfh_A 1116 LLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGY 1166 (1177)
T ss_dssp HHSSBGGGGSHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45556677888888888877777776666543 346666677666643
No 13
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=41.54 E-value=23 Score=26.91 Aligned_cols=36 Identities=14% Similarity=0.382 Sum_probs=27.2
Q ss_pred hccCCcceeeEeecCCCCccc-ccch-------hHHHHHHHHhh
Q 028641 36 SVLCDAEVAVIIFSPRGKLSE-FASS-------SMQETIERYLK 71 (206)
Q Consensus 36 svLCda~valivfsp~gkl~~-f~s~-------s~~~ii~RY~~ 71 (206)
+.-|++.|-+++|||+.+.|- |-.. .++.||+.|+.
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~ 159 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQ 159 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHH
Confidence 566999999999999999886 6543 35666666654
No 14
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=41.31 E-value=57 Score=19.61 Aligned_cols=31 Identities=26% Similarity=0.525 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028641 121 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKCG 158 (206)
Q Consensus 121 ~~EL~~Le~~Le~~L~~Ir~rK~qL~~eqi~~Lk~k~~ 158 (206)
+++|..||.+ .-.=|+|++.+.|.+++.+..
T Consensus 12 ld~l~~LEkq-------F~~LkEqlY~ERl~ql~~~Le 42 (49)
T 2xus_A 12 VSEMLDLEKQ-------FSELKEKLFRERLSQLRLRLE 42 (49)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 4555566533 334577899999999998765
No 15
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=36.38 E-value=60 Score=19.68 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 028641 84 EQNMQHLKHEAANMVKKIELLEVS 107 (206)
Q Consensus 84 ~~~~q~lk~e~~~L~kkie~le~~ 107 (206)
..+++.|+.+...|+.+++.|...
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~ 41 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEE 41 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888877654
No 16
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=36.20 E-value=4.2 Score=27.17 Aligned_cols=30 Identities=37% Similarity=0.593 Sum_probs=20.2
Q ss_pred eeeEeecCCCCcccccchhHHHHHHHHhhhcc
Q 028641 43 VAVIIFSPRGKLSEFASSSMQETIERYLKHTK 74 (206)
Q Consensus 43 valivfsp~gkl~~f~s~s~~~ii~RY~~~~~ 74 (206)
||||||+|. |+++.+. ++-..+..|++...
T Consensus 16 VaLlvfGpk-kLP~l~r-~lGk~ir~fK~~~~ 45 (78)
T 2l16_A 16 IALIIFGPS-KLPEIGR-AAGRTLLEFKSATK 45 (78)
T ss_dssp HHHHHSCTT-THHHHHH-HHHHHHHHHHHHHH
T ss_pred HHhheeCcc-HhHHHHH-HHHHHHHHHHHHHH
Confidence 789999994 8887654 44455556665444
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=35.36 E-value=98 Score=20.59 Aligned_cols=20 Identities=20% Similarity=0.551 Sum_probs=12.3
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 028641 119 CTLEELQQIERQLEKSVSNI 138 (206)
Q Consensus 119 ls~~EL~~Le~~Le~~L~~I 138 (206)
+|.+=|.+||..+..++..|
T Consensus 3 MS~ElleqLE~KIq~avdtI 22 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI 22 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666544
No 18
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=32.85 E-value=49 Score=20.08 Aligned_cols=18 Identities=39% Similarity=0.410 Sum_probs=12.1
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 028641 116 LASCTLEELQQIERQLEK 133 (206)
Q Consensus 116 L~~ls~~EL~~Le~~Le~ 133 (206)
|..+|++||++.-..|+.
T Consensus 7 Lk~ls~eEL~~rl~~Ld~ 24 (51)
T 2jo8_A 7 LKSWTVEDLQKRLLALDP 24 (51)
T ss_dssp GGGSCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHccH
Confidence 566899999875544443
No 19
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=30.84 E-value=57 Score=22.91 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=38.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhccc
Q 028641 114 EGLASCTLEELQQIERQLEKSVSNIRARKNQVFN------EQIAQLKEKCGME 160 (206)
Q Consensus 114 e~L~~ls~~EL~~Le~~Le~~L~~Ir~rK~qL~~------eqi~~Lk~k~~~~ 160 (206)
-+++++|.++|+++-..|-..+..+.+-|-.|-. -+|+.|..++...
T Consensus 37 L~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 37 LNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp CCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 4789999999999999999999999998876633 3677787776643
No 20
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=30.82 E-value=30 Score=22.76 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=19.4
Q ss_pred eeEeecCCCCcccccch-hHHHHHHH
Q 028641 44 AVIIFSPRGKLSEFASS-SMQETIER 68 (206)
Q Consensus 44 alivfsp~gkl~~f~s~-s~~~ii~R 68 (206)
-+.||.|+|..++++.. .+.+++..
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D~A~~ 32 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVIDFAYA 32 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHHHHHH
T ss_pred eEEEECCCCCEEEecCCCCHHHHHHH
Confidence 36899999999999875 66666544
No 21
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=30.27 E-value=72 Score=19.48 Aligned_cols=19 Identities=11% Similarity=0.239 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028641 87 MQHLKHEAANMVKKIELLE 105 (206)
Q Consensus 87 ~q~lk~e~~~L~kkie~le 105 (206)
++.+..+...|+.+++.++
T Consensus 36 ~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 36 YEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555566665555444
No 22
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=30.19 E-value=1.4e+02 Score=20.81 Aligned_cols=46 Identities=15% Similarity=0.266 Sum_probs=37.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhccc
Q 028641 115 GLASCTLEELQQIERQLEKSVSNIRARKNQVFN------EQIAQLKEKCGME 160 (206)
Q Consensus 115 ~L~~ls~~EL~~Le~~Le~~L~~Ir~rK~qL~~------eqi~~Lk~k~~~~ 160 (206)
+++++|.++|+++-..|-..+..+.+-|-.|-. -+|..|..++...
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 789999999999999999999999998876643 3677777776643
No 23
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=29.93 E-value=1.5e+02 Score=21.08 Aligned_cols=62 Identities=23% Similarity=0.281 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028641 85 QNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNE 148 (206)
Q Consensus 85 ~~~q~lk~e~~~L~kkie~le~~~r~l~ge~L~~ls~~EL~~Le~~Le~~L~~Ir~rK~qL~~e 148 (206)
..++.|..++..++.....|+......... ..+-+.+++..-..|+..|..+|......+.+
T Consensus 45 r~iq~L~~el~~l~~~~~sLE~~l~e~e~~--~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~E 106 (131)
T 3tnu_A 45 RTMQNLEIELQSQLSMKASLENSLEETKGR--YCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQE 106 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777666666655433211 12235666666677888888888876665554
No 24
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=29.79 E-value=2.7e+02 Score=24.04 Aligned_cols=22 Identities=9% Similarity=0.388 Sum_probs=14.3
Q ss_pred CCcccccch--hHHHHHHHHhhhc
Q 028641 52 GKLSEFASS--SMQETIERYLKHT 73 (206)
Q Consensus 52 gkl~~f~s~--s~~~ii~RY~~~~ 73 (206)
.++=.|+.+ .+.+.|.+|....
T Consensus 13 ~~~G~~CPT~C~i~d~L~k~e~~V 36 (409)
T 1m1j_C 13 ERFGSYCPTTCGIADFFNKYRLTT 36 (409)
T ss_dssp GGGCCEEECTTHHHHHHHHHHHHH
T ss_pred cccCCcCCCcccHHHHHHHHHhcc
Confidence 333344443 7999999998743
No 25
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=29.70 E-value=2.3e+02 Score=26.83 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=36.7
Q ss_pred HhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Q 028641 110 KLLGEGLASCTLEELQQIERQLEKSVSNIRARK----NQVFNEQIAQLKEKCG 158 (206)
Q Consensus 110 ~l~ge~L~~ls~~EL~~Le~~Le~~L~~Ir~rK----~qL~~eqi~~Lk~k~~ 158 (206)
.|+|-++.+|+.++...|..+.+.....+..=+ ..|..+.++.|.+++.
T Consensus 722 YLL~M~i~sLT~E~~~kL~~q~~~k~~El~~L~~~t~~dlW~~DLd~f~~~~~ 774 (803)
T 3qx3_A 722 YILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEELD 774 (803)
T ss_dssp HHHTSBGGGGSHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCchhhcCHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 367778888999999999988877776665544 4577778887777543
No 26
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=29.46 E-value=76 Score=17.54 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhH
Q 028641 88 QHLKHEAANMVKKIELLEVSKRK 110 (206)
Q Consensus 88 q~lk~e~~~L~kkie~le~~~r~ 110 (206)
+..+++++.+++++..|+...|.
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhhHHHHHHHHHHHHHHHHh
Confidence 33556666666666666655443
No 27
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.79 E-value=1.6e+02 Score=20.90 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028641 86 NMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNE 148 (206)
Q Consensus 86 ~~q~lk~e~~~L~kkie~le~~~r~l~ge~L~~ls~~EL~~Le~~Le~~L~~Ir~rK~qL~~e 148 (206)
.++.|..++..++.....|+......... .+.-+.+++..-..|+..|..+|......+.+
T Consensus 44 ~iq~L~~el~~l~~~~~~LE~~l~e~e~~--~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~E 104 (129)
T 3tnu_B 44 MIQRLRAEIDNVKKQCANLQNAIADAEQR--GELALKDARNKLAELEEALQKAKQDMARLLRE 104 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 35556666666666666666554433211 12235666666677788888888776665554
No 28
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=28.55 E-value=1.6e+02 Score=21.08 Aligned_cols=84 Identities=11% Similarity=0.158 Sum_probs=45.8
Q ss_pred hHHHHHHHHhhhcccccCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHhhHhhCC--CCCCCCHHHHHHHHHHHHHHHHH
Q 028641 61 SMQETIERYLKHTKDTRNK-QQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGE--GLASCTLEELQQIERQLEKSVSN 137 (206)
Q Consensus 61 s~~~ii~RY~~~~~~~~~~-~~~~~~~~q~lk~e~~~L~kkie~le~~~r~l~ge--~L~~ls~~EL~~Le~~Le~~L~~ 137 (206)
.++.++.+|.......... +.........|+..+..+...++.|+...+-.-.. .. +++..||..-...+...-..
T Consensus 42 ~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF-~l~~~Ei~~Rr~fV~~~r~~ 120 (130)
T 4dnd_A 42 TARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKF-KLPAGDLQERKVFVERMREA 120 (130)
T ss_dssp HHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhc-CCCHHHHHHHHHHHHHHHHH
Confidence 4666667776544332211 11111223345666666777777776655432211 12 47788888888888887777
Q ss_pred HHHHHHHH
Q 028641 138 IRARKNQV 145 (206)
Q Consensus 138 Ir~rK~qL 145 (206)
|..-|.+|
T Consensus 121 I~~mk~~l 128 (130)
T 4dnd_A 121 VQEMKDHM 128 (130)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766654
No 29
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=28.38 E-value=53 Score=22.81 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Q 028641 87 MQHLKHEAANMVKKIELLEVSKRK 110 (206)
Q Consensus 87 ~q~lk~e~~~L~kkie~le~~~r~ 110 (206)
+..|..+..+|+++++.|+..+-+
T Consensus 21 i~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 21 VEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777765533
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.76 E-value=3.1e+02 Score=24.03 Aligned_cols=37 Identities=8% Similarity=0.168 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhc
Q 028641 122 EELQQIERQLEKSVSNIRARKNQVF--NEQIAQLKEKCG 158 (206)
Q Consensus 122 ~EL~~Le~~Le~~L~~Ir~rK~qL~--~eqi~~Lk~k~~ 158 (206)
++++.+++.+++.-+.++..|.++. .++++.++++..
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554433 344444444433
No 31
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=27.20 E-value=2.1e+02 Score=21.92 Aligned_cols=64 Identities=19% Similarity=0.335 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhhHhhC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhc
Q 028641 94 AANMVKKIELLEVSKRKLLG-----EGLASCTLEELQQIERQLEKSVSNIRARKNQVFNE------QIAQLKEKCG 158 (206)
Q Consensus 94 ~~~L~kkie~le~~~r~l~g-----e~L~~ls~~EL~~Le~~Le~~L~~Ir~rK~qL~~e------qi~~Lk~k~~ 158 (206)
...|.++-+......+.++. -++++ |.++|+++-..|-..+..+-+-|-.|-.. +|+.|..++.
T Consensus 26 ~e~L~~E~e~k~eeKkkiLaER~kPLnid~-se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVn 100 (182)
T 1ytz_I 26 VTEIEKEAAAKEVEKQNYLAEHSPPLSLPG-SMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLF 100 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHH
Confidence 33444444444444444443 47888 99999999999999999999988766442 4666666544
No 32
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=27.09 E-value=14 Score=29.97 Aligned_cols=21 Identities=33% Similarity=0.699 Sum_probs=13.3
Q ss_pred CcceeeEeecCCCCccc--ccch
Q 028641 40 DAEVAVIIFSPRGKLSE--FASS 60 (206)
Q Consensus 40 da~valivfsp~gkl~~--f~s~ 60 (206)
+-|-++-+|||.|++|. |+..
T Consensus 11 ~yd~~~t~fSp~Grl~QvEYA~~ 33 (264)
T 3h4p_A 11 AYDRAITVFSPEGRLYQVEYARE 33 (264)
T ss_dssp -----CCCCCSSSSCHHHHHHHH
T ss_pred ccCCCcceECCCCeeHHHHhHHH
Confidence 34667889999999995 7654
No 33
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=26.30 E-value=13 Score=30.68 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=15.4
Q ss_pred ccCCcceeeEeecCCCCccc
Q 028641 37 VLCDAEVAVIIFSPRGKLSE 56 (206)
Q Consensus 37 vLCda~valivfsp~gkl~~ 56 (206)
+-.+-|-.+-+|||.|++|.
T Consensus 4 ~~~~yd~~~t~fSP~Grl~Q 23 (288)
T 3nzj_F 4 IGTGYDLSNSVFSPDGRNFQ 23 (288)
T ss_dssp -CCCTTSSTTCCCTTSCCHH
T ss_pred CcCCccCCcccCCCCCchHH
Confidence 34556777889999999986
No 34
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=25.07 E-value=76 Score=16.04 Aligned_cols=11 Identities=9% Similarity=0.413 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 028641 92 HEAANMVKKIE 102 (206)
Q Consensus 92 ~e~~~L~kkie 102 (206)
.+++.|++++.
T Consensus 8 keledlqerlr 18 (27)
T 3twe_A 8 KELEDLQERLR 18 (27)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444443333
No 35
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=24.74 E-value=1.1e+02 Score=17.57 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 028641 117 ASCTLEELQQIERQLEKSVSNI 138 (206)
Q Consensus 117 ~~ls~~EL~~Le~~Le~~L~~I 138 (206)
++.|.+||-.||..|...-+.+
T Consensus 15 egfspeelaaleselqalekkl 36 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKL 36 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 4678999999887766544333
No 36
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=24.74 E-value=14 Score=29.32 Aligned_cols=16 Identities=38% Similarity=0.729 Sum_probs=12.4
Q ss_pred eeEeecCCCCccc--ccc
Q 028641 44 AVIIFSPRGKLSE--FAS 59 (206)
Q Consensus 44 alivfsp~gkl~~--f~s 59 (206)
++-+|||.|++|. |+.
T Consensus 3 ~~t~fsp~Grl~QvEyA~ 20 (242)
T 1ryp_E 3 GVSTFSPEGRLFQVEYSL 20 (242)
T ss_dssp CTTCBCTTSCBHHHHHHH
T ss_pred CCceECCCCcChHHHhHH
Confidence 4568999999985 653
No 37
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=24.62 E-value=87 Score=16.56 Aligned_cols=19 Identities=37% Similarity=0.497 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028641 87 MQHLKHEAANMVKKIELLE 105 (206)
Q Consensus 87 ~q~lk~e~~~L~kkie~le 105 (206)
+..++++++.|+++|..|.
T Consensus 4 iaalkqeiaalkkeiaalk 22 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALK 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456777777777776654
No 38
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=24.60 E-value=15 Score=29.04 Aligned_cols=17 Identities=41% Similarity=0.784 Sum_probs=13.3
Q ss_pred ceeeEeecCCCCccc--cc
Q 028641 42 EVAVIIFSPRGKLSE--FA 58 (206)
Q Consensus 42 ~valivfsp~gkl~~--f~ 58 (206)
|-++-+|||.|++|. |+
T Consensus 3 d~~~t~fsp~Grl~QvEya 21 (241)
T 1ryp_D 3 DRALSIFSPDGHIFQVEYA 21 (241)
T ss_dssp CCCCSCCBTTTBCHHHHHH
T ss_pred CCCceeECCCCcchHHHHH
Confidence 446679999999985 64
No 39
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=24.55 E-value=21 Score=18.29 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=7.8
Q ss_pred CCcceecccccc
Q 028641 15 TSRQVTFSKRRN 26 (206)
Q Consensus 15 ~~RqvTfsKRr~ 26 (206)
+.|.+-|.||++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 456777777763
No 40
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=24.26 E-value=54 Score=24.98 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=24.2
Q ss_pred cCCcceeeEeecCCCCcccccchhHHHHHHHHh
Q 028641 38 LCDAEVAVIIFSPRGKLSEFASSSMQETIERYL 70 (206)
Q Consensus 38 LCda~valivfsp~gkl~~f~s~s~~~ii~RY~ 70 (206)
+-++.+++||||++=--..|+-..+..|+++..
T Consensus 60 Ie~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~ 92 (176)
T 3jrn_A 60 IEVSRFAVVVVSENYAASSWCLDELVTIMDFEK 92 (176)
T ss_dssp CTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCEEEEEecCCcCCChhHHHHHHHHHhhhc
Confidence 567889999999984334466567778887764
No 41
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=24.04 E-value=4.3e+02 Score=25.84 Aligned_cols=11 Identities=36% Similarity=0.489 Sum_probs=0.0
Q ss_pred ccchhhhhhhh
Q 028641 25 RNGLLKKAFEL 35 (206)
Q Consensus 25 r~GL~KKA~EL 35 (206)
..+|-+|..||
T Consensus 923 ~~~LE~kl~eL 933 (1080)
T 2dfs_A 923 HIGLENKIMQL 933 (1080)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 42
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.67 E-value=1.1e+02 Score=17.62 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh
Q 028641 85 QNMQHLKHEAANMVKKIELLEVSKR 109 (206)
Q Consensus 85 ~~~q~lk~e~~~L~kkie~le~~~r 109 (206)
+.++.+..|+++-.++|..++..++
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777766665443
No 43
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=23.37 E-value=17 Score=29.14 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=15.7
Q ss_pred CCcceeeEeecCCCCccc--ccc
Q 028641 39 CDAEVAVIIFSPRGKLSE--FAS 59 (206)
Q Consensus 39 Cda~valivfsp~gkl~~--f~s 59 (206)
.+=|-++-+|||.|++|. |+.
T Consensus 5 ~~yd~~~t~fsp~Grl~QvEyA~ 27 (254)
T 1iru_G 5 TGYDLSASTFSPDGRVFQVEYAM 27 (254)
T ss_dssp SSTTSCTTCCCTTSCCHHHHHHH
T ss_pred cccCCCCccCCcCCccHHHHhHH
Confidence 345667779999999995 654
No 44
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=22.94 E-value=33 Score=25.87 Aligned_cols=30 Identities=10% Similarity=0.222 Sum_probs=22.4
Q ss_pred hhhccCCcce----eeEeecCCCCcccccchhHH
Q 028641 34 ELSVLCDAEV----AVIIFSPRGKLSEFASSSMQ 63 (206)
Q Consensus 34 ELsvLCda~v----alivfsp~gkl~~f~s~s~~ 63 (206)
|+|.-||.+| +....-.+|++|-|+|+--.
T Consensus 6 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~ 39 (158)
T 4a17_T 6 GTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAK 39 (158)
T ss_dssp EECTTTCCEECTTCCEEEECTTSCEEEESCHHHH
T ss_pred EEecCcCCcccCCCCeEEEeeCCceEEEEcHHHH
Confidence 5677788887 55666678999999998333
No 45
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=22.78 E-value=18 Score=28.86 Aligned_cols=19 Identities=37% Similarity=0.662 Sum_probs=14.6
Q ss_pred cceeeEeecCCCCccc--ccc
Q 028641 41 AEVAVIIFSPRGKLSE--FAS 59 (206)
Q Consensus 41 a~valivfsp~gkl~~--f~s 59 (206)
-|-++-+|||.|++|. |+.
T Consensus 5 yd~~~t~fsp~Grl~QvEyA~ 25 (250)
T 1ryp_B 5 YSFSLTTFSPSGKLGQIDYAL 25 (250)
T ss_dssp CCSBSSCBCTTSCBHHHHHHH
T ss_pred ccCCceeECCCCccHHHHhHH
Confidence 3566779999999985 653
No 46
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=22.62 E-value=18 Score=28.38 Aligned_cols=18 Identities=39% Similarity=0.713 Sum_probs=14.1
Q ss_pred ceeeEeecCCCCccc--ccc
Q 028641 42 EVAVIIFSPRGKLSE--FAS 59 (206)
Q Consensus 42 ~valivfsp~gkl~~--f~s 59 (206)
|-.+-+|||.|++|. |+.
T Consensus 6 d~~~t~fsp~Grl~QvEya~ 25 (233)
T 1iru_B 6 SFSLTTFSPSGKLVQIEYAL 25 (233)
T ss_dssp CSBSCCCCTTSCCHHHHHHH
T ss_pred cCCceeECCCCeEehhHhHH
Confidence 556779999999985 653
No 47
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=22.55 E-value=52 Score=18.97 Aligned_cols=16 Identities=50% Similarity=0.619 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 028641 87 MQHLKHEAANMVKKIE 102 (206)
Q Consensus 87 ~q~lk~e~~~L~kkie 102 (206)
+.++..++++|+++|+
T Consensus 33 iaylekeianlrkkie 48 (49)
T 3he5_A 33 IAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5567777888877764
No 48
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=22.34 E-value=3.1e+02 Score=22.48 Aligned_cols=49 Identities=8% Similarity=0.018 Sum_probs=24.7
Q ss_pred hHHHHHHHHhhhcccccC-CC-CCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 028641 61 SMQETIERYLKHTKDTRN-KQ-QPTEQNMQHLKHEAANMVKKIELLEVSKR 109 (206)
Q Consensus 61 s~~~ii~RY~~~~~~~~~-~~-~~~~~~~q~lk~e~~~L~kkie~le~~~r 109 (206)
.+.+|++.|.-..-.-.. .. ....+.++.++.++..+...++.++..++
T Consensus 200 ~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~ 250 (357)
T 3rrk_A 200 AARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVA 250 (357)
T ss_dssp HHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677666432211110 11 02234456677777777777766654443
No 49
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=22.29 E-value=77 Score=21.77 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=25.2
Q ss_pred CcceeeEeecCCCCccc--ccch------hHHHHHHHHhhh
Q 028641 40 DAEVAVIIFSPRGKLSE--FASS------SMQETIERYLKH 72 (206)
Q Consensus 40 da~valivfsp~gkl~~--f~s~------s~~~ii~RY~~~ 72 (206)
|--|+.||...+.|+.+ |+.. ++++|+.+|++.
T Consensus 63 DKTvGFvviN~dKK~mSvsFsd~~~~~K~~i~ei~kkykd~ 103 (111)
T 2jmk_A 63 DKTVGFVVVNADKKLMSVSFSDIDENMKKVIKATAEKFKNK 103 (111)
T ss_dssp CEEEEEEEEETTTTEEEEEECSCCTTHHHHHHHHHHHGGGG
T ss_pred CceeEEEEEecCCeEEEEEeehhhhhHHHHHHHHHHHhhcC
Confidence 34579999999988765 6542 688899999874
No 50
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=22.06 E-value=19 Score=28.71 Aligned_cols=18 Identities=39% Similarity=0.796 Sum_probs=13.5
Q ss_pred ceeeEeecCCCCccc--ccc
Q 028641 42 EVAVIIFSPRGKLSE--FAS 59 (206)
Q Consensus 42 ~valivfsp~gkl~~--f~s 59 (206)
|-.+-+|||.|++|. |+-
T Consensus 4 d~~~t~fsp~Grl~QvEYA~ 23 (248)
T 1iru_D 4 DRAITVFSPDGHLFQVEYAQ 23 (248)
T ss_dssp CCCCSCCCTTSCCHHHHHHH
T ss_pred cCCCceECCCCcchHHHHHH
Confidence 345678999999985 643
No 51
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=21.47 E-value=21 Score=28.10 Aligned_cols=18 Identities=39% Similarity=0.744 Sum_probs=11.2
Q ss_pred cceeeEeecCCCCccc--cc
Q 028641 41 AEVAVIIFSPRGKLSE--FA 58 (206)
Q Consensus 41 a~valivfsp~gkl~~--f~ 58 (206)
=|-.+-+|||.|++|. |+
T Consensus 8 yd~~~t~fsp~Grl~QvEya 27 (233)
T 1yar_A 8 YSRAITVFSPDGRLFQVEYA 27 (233)
T ss_dssp -----CCCCTTSCCHHHHHH
T ss_pred CCCCCceECcCCeeHHHHhH
Confidence 3566778999999985 65
No 52
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=20.95 E-value=1.4e+02 Score=19.60 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 028641 85 QNMQHLKHEAANMVKKIELLEVSKRKLL 112 (206)
Q Consensus 85 ~~~q~lk~e~~~L~kkie~le~~~r~l~ 112 (206)
.+.+++..++.+|++.|+.|...+|.++
T Consensus 52 ~~~~QideeV~~LKe~IdaLNK~Kke~l 79 (83)
T 1zke_A 52 AFFTQLSEEVERLKELINALNKIKKGLL 79 (83)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888999999999999998887764
No 53
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=20.90 E-value=7.9 Score=25.81 Aligned_cols=35 Identities=23% Similarity=0.438 Sum_probs=27.7
Q ss_pred hhhhhhhhccCCcceeeEeecCCCCcccccchhHHHHHHHHhhhcc
Q 028641 29 LKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTK 74 (206)
Q Consensus 29 ~KKA~ELsvLCda~valivfsp~gkl~~f~s~s~~~ii~RY~~~~~ 74 (206)
+|+|.|.+.+++=|.|++.|. ++..-|+||.....
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~-----------g~~~qI~k~l~~~~ 50 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ-----------GVLDQMNKYLYSVK 50 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH-----------HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHhcChHHHHHHHH-----------HHHHHHHHHHHhcC
Confidence 589999999999887776653 57778888887654
No 54
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=20.63 E-value=26 Score=25.89 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=28.3
Q ss_pred ccee-ccccccchhh---------hhhhhhccCCcceeeEeecCCCC
Q 028641 17 RQVT-FSKRRNGLLK---------KAFELSVLCDAEVAVIIFSPRGK 53 (206)
Q Consensus 17 RqvT-fsKRr~GL~K---------KA~ELsvLCda~valivfsp~gk 53 (206)
+.+| ||+-|+.|-. +..++.+-||.|+-|+..-|.|.
T Consensus 54 g~~~y~SRSR~~LW~KGetSG~~Q~v~~i~~DCD~D~LL~~V~q~G~ 100 (138)
T 1zps_A 54 GTAHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAVVLKVEQEGG 100 (138)
T ss_dssp SBCEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEEEEEEEESSC
T ss_pred CcEEEEcCCCCccccCccCCCCcEEEEEEEecCCCCEEEEEEEecCC
Confidence 3445 5776776644 45799999999999999988874
No 55
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=20.39 E-value=1.4e+02 Score=22.41 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028641 120 TLEELQQIERQLEKSVSNIRARKNQV 145 (206)
Q Consensus 120 s~~EL~~Le~~Le~~L~~Ir~rK~qL 145 (206)
|+.|.+.|+..-...+.+|+.++.+|
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~L 28 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQL 28 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777776654
No 56
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=20.38 E-value=3.2e+02 Score=21.93 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028641 87 MQHLKHEAANMVKKIELLEV 106 (206)
Q Consensus 87 ~q~lk~e~~~L~kkie~le~ 106 (206)
+.+|+.+...+..+++.|..
T Consensus 151 l~~Lkk~~~~i~~~LelL~I 170 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNI 170 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555543
No 57
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.36 E-value=2.5e+02 Score=24.15 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhCCCCCCC
Q 028641 90 LKHEAANMVKKIELLEVSKRKLLGEGLASC 119 (206)
Q Consensus 90 lk~e~~~L~kkie~le~~~r~l~ge~L~~l 119 (206)
|+..++++..+|..||...+.-.+.+-.+|
T Consensus 139 Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC 168 (390)
T 1deq_A 139 LQKNVRDQLVDMKRLEVDIDIKIRSCKGSC 168 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 344444444555555544433334333333
Done!