Query 028643
Match_columns 206
No_of_seqs 159 out of 1185
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 14:43:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02364 L-ascorbate peroxidas 100.0 3.9E-64 8.4E-69 432.3 17.8 204 1-205 1-207 (250)
2 PLN02608 L-ascorbate peroxidas 100.0 2.1E-63 4.6E-68 434.1 18.1 200 5-205 3-204 (289)
3 PLN02879 L-ascorbate peroxidas 100.0 5.3E-63 1.1E-67 424.9 17.6 204 1-205 2-207 (251)
4 cd00691 ascorbate_peroxidase A 100.0 5.5E-60 1.2E-64 407.5 16.2 183 9-199 13-198 (253)
5 PLN03030 cationic peroxidase; 100.0 8.2E-59 1.8E-63 410.5 13.8 183 2-199 31-260 (324)
6 cd00693 secretory_peroxidase H 100.0 3.8E-56 8.3E-61 391.6 14.7 183 2-199 8-239 (298)
7 PF00141 peroxidase: Peroxidas 100.0 6.9E-55 1.5E-59 371.4 3.5 173 12-198 1-205 (230)
8 cd00692 ligninase Ligninase an 100.0 2.2E-50 4.8E-55 357.8 16.0 176 20-197 21-209 (328)
9 cd08201 plant_peroxidase_like_ 100.0 2.9E-51 6.3E-56 352.6 8.8 171 28-204 37-222 (264)
10 cd00314 plant_peroxidase_like 100.0 5.5E-50 1.2E-54 345.0 15.4 182 12-200 3-199 (255)
11 cd00649 catalase_peroxidase_1 100.0 5.1E-47 1.1E-51 342.0 12.7 186 13-199 41-313 (409)
12 TIGR00198 cat_per_HPI catalase 100.0 3.2E-45 6.8E-50 348.7 12.7 184 15-199 53-322 (716)
13 PRK15061 catalase/hydroperoxid 100.0 1E-42 2.2E-47 330.3 12.9 186 13-199 53-326 (726)
14 cd08200 catalase_peroxidase_2 100.0 7.4E-40 1.6E-44 285.2 14.2 180 13-198 13-225 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 1.7E-35 3.6E-40 282.3 15.1 181 12-198 430-638 (716)
16 PRK15061 catalase/hydroperoxid 100.0 1.8E-34 3.9E-39 274.2 14.5 180 13-198 438-650 (726)
17 COG0376 KatG Catalase (peroxid 100.0 1.1E-30 2.4E-35 239.8 11.2 184 15-199 68-338 (730)
18 COG0376 KatG Catalase (peroxid 99.6 1.9E-15 4.1E-20 139.9 8.7 181 12-198 447-654 (730)
19 PF09027 GTPase_binding: GTPas 60.9 2.6 5.6E-05 29.4 -0.2 21 181-205 31-51 (66)
20 PF15656 Tox-HDC: Toxin with a 37.1 35 0.00075 26.5 2.7 55 138-196 14-70 (119)
21 PRK13859 type IV secretion sys 34.7 28 0.0006 23.2 1.5 30 96-125 9-41 (55)
22 PF08383 Maf_N: Maf N-terminal 32.0 29 0.00064 21.1 1.2 15 147-161 19-34 (35)
23 KOG0400 40S ribosomal protein 28.9 29 0.00063 27.6 1.1 34 136-170 31-65 (151)
24 TIGR01911 HesB_rel_seleno HesB 25.5 23 0.0005 25.8 -0.0 32 17-58 8-39 (92)
25 COG4982 3-oxoacyl-[acyl-carrie 23.7 19 0.00041 35.7 -0.9 55 129-194 693-747 (866)
No 1
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=3.9e-64 Score=432.30 Aligned_cols=204 Identities=75% Similarity=1.252 Sum_probs=194.6
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHhhhhhcCCchhhHHHHHhhccccccCcCCCCCCCCcccchHHhhccccCchHHHHHH
Q 028643 1 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRL 80 (206)
Q Consensus 1 ~~~~cP~~~~~v~~~v~~~~~~i~~~~~~~~~a~~llRl~FHDc~~~d~s~~~gG~dgSi~~~~E~~~~~N~gl~~~~~~ 80 (206)
|++.||.+.+.+++++++++++|++++.+++++|.||||+||||++||.....|||||||.+++|+++++|.+|.+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~~E~~~~~N~gl~~~~~~ 80 (250)
T PLN02364 1 MTKNYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRL 80 (250)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHccccCcCcCCCCCCCCccccccccccCCCccCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999888999999999999999999999899999
Q ss_pred HHHHHHhCCCCcHHHHHhhhccceeeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHh-cCCChhhhhHh
Q 028643 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQ-MGLSDKDIVAL 159 (206)
Q Consensus 81 i~~ik~~~~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~-~Gl~~~d~VaL 159 (206)
|++||+++++|||||||+||||+||+++|||.|+|++||+|++++.++++||.|+.++++|++.| +. +||+++|||||
T Consensus 81 i~~ik~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F-~~~~Gl~~~d~VaL 159 (250)
T PLN02364 81 LDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVF-AKQMGLSDKDIVAL 159 (250)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccCCCCCCCcCHHHHHHHH-HHhcCCCHHHheee
Confidence 99999999999999999999999999999999999999999999998889999999999999999 75 69999999999
Q ss_pred cCcccCcccccCCCCCCCCCCCCCCccCHHHHHHHHhC--CCCCCCCC
Q 028643 160 SGGHTLGRCHKERSGFEGPWTRNPLIFDNSYFTYVSLV--SLPDMFGS 205 (206)
Q Consensus 160 ~GaHTiG~~~~~~~~~~~~~~~tp~~fDn~Yy~~ll~~--~~p~~~g~ 205 (206)
+||||||++||.++++.|+|+.||.+|||+||++|+.+ +.+.+|-|
T Consensus 160 sGaHTiG~~hc~r~~~~g~~~~tp~~fDn~Yy~~ll~~~~~gll~l~s 207 (250)
T PLN02364 160 SGAHTLGRCHKDRSGFEGAWTSNPLIFDNSYFKELLSGEKEGLLQLVS 207 (250)
T ss_pred ecceeeccccCCCCCCCCCCCCCCCccchHHHHHHhcCCcCCCccccc
Confidence 99999999999999999999999999999999999998 44554433
No 2
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=2.1e-63 Score=434.14 Aligned_cols=200 Identities=64% Similarity=1.048 Sum_probs=190.9
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhcCCchhhHHHHHhhccccccCcCCCCCCCCcccchHHhhccccCchHHHHHHHHHH
Q 028643 5 YPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPF 84 (206)
Q Consensus 5 cP~~~~~v~~~v~~~~~~i~~~~~~~~~a~~llRl~FHDc~~~d~s~~~gG~dgSi~~~~E~~~~~N~gl~~~~~~i~~i 84 (206)
.|.++..|-.+|++++++|+++++++.++|.||||+||||++||.+++.|||||||++++|+++++|.+|++++++|++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~~E~~~~~N~gL~~g~~vid~i 82 (289)
T PLN02608 3 APVVDAEYLKEIEKARRDLRALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKIAIDLCEPV 82 (289)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecccccCCccccchHHHHHHHHHH
Confidence 58889999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HHhCCCCcHHHHHhhhccceeeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCChhhhhHhcCccc
Q 028643 85 KEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHT 164 (206)
Q Consensus 85 k~~~~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaL~GaHT 164 (206)
|+++|+|||||||+||||+||+++|||.|+|++||+|+++++++++||.|+.+++++++.| +++||+++|||+|+||||
T Consensus 83 K~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F-~~~Gl~~~D~VaLsGAHT 161 (289)
T PLN02608 83 KAKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEGRLPDAKKGAKHLRDVF-YRMGLSDKDIVALSGGHT 161 (289)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccCCCcCCCCCHHHHHHHH-HHcCCCHHHHhhhccccc
Confidence 9999999999999999999999999999999999999999988889999999999999999 999999999999999999
Q ss_pred CcccccCCCCCCCCCCCCCCccCHHHHHHHHhCC--CCCCCCC
Q 028643 165 LGRCHKERSGFEGPWTRNPLIFDNSYFTYVSLVS--LPDMFGS 205 (206)
Q Consensus 165 iG~~~~~~~~~~~~~~~tp~~fDn~Yy~~ll~~~--~p~~~g~ 205 (206)
||++||.+++|.++|+.||.+|||+||++|+++. .+.||-|
T Consensus 162 iG~ahc~r~g~~g~~~~Tp~~FDN~Yy~~ll~~~~~gll~L~S 204 (289)
T PLN02608 162 LGRAHPERSGFDGPWTKEPLKFDNSYFVELLKGESEGLLKLPT 204 (289)
T ss_pred cccccccCCCCCCCCCCCCCccChHHHHHHHcCCcCCcccccc
Confidence 9999999988889999999999999999999984 4544544
No 3
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=5.3e-63 Score=424.93 Aligned_cols=204 Identities=73% Similarity=1.225 Sum_probs=195.6
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHhhhhhcCCchhhHHHHHhhccccccCcCCCCCCCCcccchHHhhccccCchHHHHHH
Q 028643 1 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRL 80 (206)
Q Consensus 1 ~~~~cP~~~~~v~~~v~~~~~~i~~~~~~~~~a~~llRl~FHDc~~~d~s~~~gG~dgSi~~~~E~~~~~N~gl~~~~~~ 80 (206)
|.+.||.+.+.++++++.++++|.+++.++.++|.+|||+||||.+||..+++|||||||++.+|+++++|.||..++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~~E~~~~~N~gL~~~~~~ 81 (251)
T PLN02879 2 VKKSYPEVKEEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRL 81 (251)
T ss_pred CcccCCCccHHHHHHHHHHHHHHHHHHhCCCchhHhHHHHHhhhccccCCCCCCCCCeeecChhhccCCCcCChHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHhCCCCcHHHHHhhhccceeeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCChhhhhHhc
Q 028643 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS 160 (206)
Q Consensus 81 i~~ik~~~~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaL~ 160 (206)
|++||+++++|||||||+|||++||+++|||.|+|++||+|+.++.++++||.|+.++++|++.| +++||+++|||||+
T Consensus 82 i~~iK~~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F-~~~Gl~~~dlVALs 160 (251)
T PLN02879 82 LDPIKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVF-GRMGLNDKDIVALS 160 (251)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHH-HHcCCCHHHHeeee
Confidence 99999999999999999999999999999999999999999999988899999999999999999 99999999999999
Q ss_pred CcccCcccccCCCCCCCCCCCCCCccCHHHHHHHHhC--CCCCCCCC
Q 028643 161 GGHTLGRCHKERSGFEGPWTRNPLIFDNSYFTYVSLV--SLPDMFGS 205 (206)
Q Consensus 161 GaHTiG~~~~~~~~~~~~~~~tp~~fDn~Yy~~ll~~--~~p~~~g~ 205 (206)
||||||++||.++++.|.|+.||.+|||+||++|+.+ +...||-|
T Consensus 161 GaHTiG~ah~~r~g~~g~~d~tp~~FDN~Yy~~ll~~~~~gll~L~S 207 (251)
T PLN02879 161 GGHTLGRCHKERSGFEGAWTPNPLIFDNSYFKEILSGEKEGLLQLPT 207 (251)
T ss_pred ccccccccccccccCCCCCCCCccceeHHHHHHHHcCCcCCCccchh
Confidence 9999999999999999999999999999999999998 44545543
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=5.5e-60 Score=407.51 Aligned_cols=183 Identities=61% Similarity=1.093 Sum_probs=171.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhcCCchhhHHHHHhhccccccCcCCCCCCCCcccchHHhhccccCchHHHHHHHHHHHHhC
Q 028643 9 SEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF 88 (206)
Q Consensus 9 ~~~v~~~v~~~~~~i~~~~~~~~~a~~llRl~FHDc~~~d~s~~~gG~dgSi~~~~E~~~~~N~gl~~~~~~i~~ik~~~ 88 (206)
..+|+++|+++ +++++++|+||||+|||||+||++.+.+||||++.+++|+++++|.+|.+++++|++||+++
T Consensus 13 ~~~V~~~v~~~-------~~~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~ 85 (253)
T cd00691 13 LEAARNDIAKL-------IDDKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY 85 (253)
T ss_pred HHHHHHHHHHH-------HHcCCcHHHHHHHHHHHHhccccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc
Confidence 35566666554 33999999999999999999999999999999999989999999999989999999999999
Q ss_pred CCCcHHHHHhhhccceeeccCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHhcCCChhhhhHhcCcccC
Q 028643 89 PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP---QEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTL 165 (206)
Q Consensus 89 ~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~---~~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaL~GaHTi 165 (206)
|+|||||||+||||+||+.+|||.|+|++||+|+.++. ++++||.|+.+++++++.| +++||+.+|||+|+|||||
T Consensus 86 ~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F-~~~Gls~~d~VaLsGaHTi 164 (253)
T cd00691 86 PDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVF-YRMGFNDQEIVALSGAHTL 164 (253)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHH-HhcCCCHHHHHHhccccee
Confidence 99999999999999999999999999999999999986 6778999999999999999 9999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCCccCHHHHHHHHhCCC
Q 028643 166 GRCHKERSGFEGPWTRNPLIFDNSYFTYVSLVSL 199 (206)
Q Consensus 166 G~~~~~~~~~~~~~~~tp~~fDn~Yy~~ll~~~~ 199 (206)
|++||.++++.++|+.||.+|||+||++|+.+++
T Consensus 165 G~a~c~~~~~~g~~~~tp~~FDn~Yy~~ll~~~g 198 (253)
T cd00691 165 GRCHKERSGYDGPWTKNPLKFDNSYFKELLEEDW 198 (253)
T ss_pred ecccccCCCCCCCCCCCCCcccHHHHHHHhcCCC
Confidence 9999988888888899999999999999999987
No 5
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=8.2e-59 Score=410.50 Aligned_cols=183 Identities=27% Similarity=0.355 Sum_probs=165.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhhhhcCCchhhHHHHHhhccccccCcCCCCCCCCcccch---HHhhccccCchHHHH
Q 028643 2 TKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLA---AEQAHSANNGLDIAV 78 (206)
Q Consensus 2 ~~~cP~~~~~v~~~v~~~~~~i~~~~~~~~~a~~llRl~FHDc~~~d~s~~~gG~dgSi~~~---~E~~~~~N~gl~~~~ 78 (206)
.+|||++|.||+++|+++ +.+|++++|++|||+|||||+ +||||||++. .|+++++|.+| +||
T Consensus 31 ~~sCP~aE~iV~~~v~~~------~~~d~~~aa~llRL~FHDCfv-------~GCDaSvLl~~~~~Ek~a~~N~~l-~Gf 96 (324)
T PLN03030 31 STTCPQAESIVRKTVQSH------FQSNPAIAPGLLRMHFHDCFV-------RGCDASILIDGSNTEKTALPNLLL-RGY 96 (324)
T ss_pred hCcCCCHHHHHHHHHHHH------HhhCcccchhhhhhhhhhhee-------cCCceEEeeCCCcccccCCCCcCc-chH
Confidence 479999999999999998 888999999999999999997 9999999984 79999999988 799
Q ss_pred HHHHHHHHh----CC-CCcHHHHHhhhccceeeccCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHhcCC
Q 028643 79 RLLEPFKEQ----FP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP--QEGRLPDAKQGNDHLRQVFGAQMGL 151 (206)
Q Consensus 79 ~~i~~ik~~----~~-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~--~~~~lP~p~~~~~~l~~~F~~~~Gl 151 (206)
++|+.||++ || +|||||||++|||+||+++|||.|+|++||+|+.++. ...+||.|+.++++|++.| +++||
T Consensus 97 ~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F-~~~Gl 175 (324)
T PLN03030 97 DVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKF-AAKGL 175 (324)
T ss_pred HHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHH-HHcCC
Confidence 999999975 89 8999999999999999999999999999999999873 3357999999999999999 99999
Q ss_pred ChhhhhHhcCcccCcccccCCC-----CCCC-------------------------C-------CCCCCCccCHHHHHHH
Q 028643 152 SDKDIVALSGGHTLGRCHKERS-----GFEG-------------------------P-------WTRNPLIFDNSYFTYV 194 (206)
Q Consensus 152 ~~~d~VaL~GaHTiG~~~~~~~-----~~~~-------------------------~-------~~~tp~~fDn~Yy~~l 194 (206)
+.+|||+||||||||++||..+ +|.+ . +..||.+|||+||++|
T Consensus 176 ~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nl 255 (324)
T PLN03030 176 NTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNL 255 (324)
T ss_pred CHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHH
Confidence 9999999999999999999532 1110 0 2268999999999999
Q ss_pred HhCCC
Q 028643 195 SLVSL 199 (206)
Q Consensus 195 l~~~~ 199 (206)
+.+++
T Consensus 256 l~~rG 260 (324)
T PLN03030 256 KNGRG 260 (324)
T ss_pred HhcCC
Confidence 99885
No 6
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=3.8e-56 Score=391.56 Aligned_cols=183 Identities=31% Similarity=0.453 Sum_probs=165.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhhhhcCCchhhHHHHHhhccccccCcCCCCCCCCcccc------hHHhhccccCchH
Q 028643 2 TKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL------AAEQAHSANNGLD 75 (206)
Q Consensus 2 ~~~cP~~~~~v~~~v~~~~~~i~~~~~~~~~a~~llRl~FHDc~~~d~s~~~gG~dgSi~~------~~E~~~~~N~gl~ 75 (206)
.++||++|.||+++|+++ +..+++++|++|||+|||||+ +||||||++ .+|+++++|.++
T Consensus 8 ~~sCP~~e~iV~~~v~~~------~~~~~~~a~~~lRl~FHDc~v-------~GcDaSill~~~~~~~~E~~~~~N~~l- 73 (298)
T cd00693 8 SKSCPNAESIVRSVVRAA------VKADPRLAAALLRLHFHDCFV-------RGCDASVLLDSTANNTSEKDAPPNLSL- 73 (298)
T ss_pred cCCCCChHHHHHHHHHHH------HHhCCCcCchhhhhhhHhhhc-------cCcceeEEecCCCCCchhccCCCCCCc-
Confidence 579999999999999998 888999999999999999997 899999997 369999999998
Q ss_pred HHHHHHHHHHHh----CC-CCcHHHHHhhhccceeeccCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHh
Q 028643 76 IAVRLLEPFKEQ----FP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ--EGRLPDAKQGNDHLRQVFGAQ 148 (206)
Q Consensus 76 ~~~~~i~~ik~~----~~-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~--~~~lP~p~~~~~~l~~~F~~~ 148 (206)
++|++|+.||++ || +|||||||+||||+||+.+|||.|+|++||+|+.++.+ .+.||.|+.+++++++.| ++
T Consensus 74 ~g~~~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F-~~ 152 (298)
T cd00693 74 RGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLF-AS 152 (298)
T ss_pred chhHHHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHH-HH
Confidence 799999999975 78 89999999999999999999999999999999987643 368999999999999999 99
Q ss_pred cCCChhhhhHhcCcccCcccccC----C-CCCCC--------------------CC----------C-CCCCccCHHHHH
Q 028643 149 MGLSDKDIVALSGGHTLGRCHKE----R-SGFEG--------------------PW----------T-RNPLIFDNSYFT 192 (206)
Q Consensus 149 ~Gl~~~d~VaL~GaHTiG~~~~~----~-~~~~~--------------------~~----------~-~tp~~fDn~Yy~ 192 (206)
+||+++|||||+||||||++||. | ++|.| ++ + .||.+|||+||+
T Consensus 153 ~G~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~ 232 (298)
T cd00693 153 KGLTVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYK 232 (298)
T ss_pred cCCCHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHH
Confidence 99999999999999999999994 2 23321 11 2 789999999999
Q ss_pred HHHhCCC
Q 028643 193 YVSLVSL 199 (206)
Q Consensus 193 ~ll~~~~ 199 (206)
+|+.+.+
T Consensus 233 ~l~~~~g 239 (298)
T cd00693 233 NLLAGRG 239 (298)
T ss_pred HHHhccc
Confidence 9998864
No 7
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=6.9e-55 Score=371.39 Aligned_cols=173 Identities=37% Similarity=0.620 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHhhhhhcCCchhhHHHHHhhccccccCcCCCCCCCCcccc-hHHhhccccCchHHHHHHHHHHHHh---
Q 028643 12 YKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL-AAEQAHSANNGLDIAVRLLEPFKEQ--- 87 (206)
Q Consensus 12 v~~~v~~~~~~i~~~~~~~~~a~~llRl~FHDc~~~d~s~~~gG~dgSi~~-~~E~~~~~N~gl~~~~~~i~~ik~~--- 87 (206)
||++|+++ +..+++++|+||||+||||++| |||||||++ ..|+++++|.+|.+++++|++||++
T Consensus 1 Vr~~v~~~------~~~~~~~~~~~lRl~FHDc~~~------~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~ 68 (230)
T PF00141_consen 1 VRSDVRAA------FKKDPTLAPGLLRLAFHDCFVY------GGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEA 68 (230)
T ss_dssp HHHHHHHH------HHHHTTSHHHHHHHHHHHHTTH------TSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCH
T ss_pred CHHHHHHH------HHHCcCccHHHHHHHccccccc------cccccceeccccccccccccCcceeeechhhHHhhhcc
Confidence 67778777 6669999999999999999987 999999976 8899999999998899999999986
Q ss_pred -CC-CCcHHHHHhhhccceeeccCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHhcCCChhhhhHhcCcc
Q 028643 88 -FP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGH 163 (206)
Q Consensus 88 -~~-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~--~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaL~GaH 163 (206)
|| +|||||||+|||++||+.+|||.|+|++||+|+.++.+.+ +||.|..+++++++.| +++||+++|||||+|||
T Consensus 69 ~cp~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F-~~~Gls~~e~VaLsGaH 147 (230)
T PF00141_consen 69 ACPGVVSCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFF-ARKGLSAEEMVALSGAH 147 (230)
T ss_dssp HSTTTS-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHH-HHTT--HHHHHHHHGGG
T ss_pred cccCCCCHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhh-hccccchhhhcceeccc
Confidence 77 7999999999999999999999999999999999997643 5999999999999999 99999999999999999
Q ss_pred cCcccccCCCC---C------C---------------CCCCCCCCccCHHHHHHHHhCC
Q 028643 164 TLGRCHKERSG---F------E---------------GPWTRNPLIFDNSYFTYVSLVS 198 (206)
Q Consensus 164 TiG~~~~~~~~---~------~---------------~~~~~tp~~fDn~Yy~~ll~~~ 198 (206)
|||++||..+. + + .+++ ||.+|||+||++|+++.
T Consensus 148 TiG~~~c~~f~rl~~~~dp~~d~~~~~~~C~~~~~~~~~~d-tp~~fDN~Yy~~ll~~~ 205 (230)
T PF00141_consen 148 TIGRAHCSSFSRLYFPPDPTMDPGYAGQNCNSGGDNGVPLD-TPTVFDNSYYKNLLNGR 205 (230)
T ss_dssp GSTEESGGCTGGTSCSSGTTSTHHHHHHSSSTSGCTCEESS-STTS-SSHHHHHHHHTE
T ss_pred ccccceeccccccccccccccccccceeccCCCcccccccc-CCCcchhHHHHHHhcCC
Confidence 99999996211 0 0 0234 89999999999999865
No 8
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.2e-50 Score=357.83 Aligned_cols=176 Identities=31% Similarity=0.513 Sum_probs=153.1
Q ss_pred HHHHhhhh-hcCC---chhhHHHHHhhccccccC-----cCCCCCCCCcccch--HHhhccccCchHHHHHHHHHHHHhC
Q 028643 20 KRKLRGFI-AEKN---CAPLMLRIAWHSAGTYDV-----KTKTGGPFGTMRLA--AEQAHSANNGLDIAVRLLEPFKEQF 88 (206)
Q Consensus 20 ~~~i~~~~-~~~~---~a~~llRl~FHDc~~~d~-----s~~~gG~dgSi~~~--~E~~~~~N~gl~~~~~~i~~ik~~~ 88 (206)
+++|++.+ .+.. .|+.+|||+||||++||. ..+.|||||||++. .|+++++|.||...++.|+++++++
T Consensus 21 ~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~~E~~~~~N~gL~~vvd~lk~~~e~~ 100 (328)
T cd00692 21 LDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDDIETAFHANIGLDEIVEALRPFHQKH 100 (328)
T ss_pred HHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCcccccCCCCCCHHHHHHHHHHHHHhc
Confidence 34444444 3444 466799999999999994 56789999999874 5999999999987777777777776
Q ss_pred CCCcHHHHHhhhccceee-ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCChhhhhHhcCcccCcc
Q 028643 89 PTISYADLYQLAGVVGVE-VTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGR 167 (206)
Q Consensus 89 ~~VS~ADiialAa~~av~-~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaL~GaHTiG~ 167 (206)
+ |||||||+||||+||+ ++|||.|+|++||+|++++.++++||.|+.++++|++.| +++||+.+|||+|+||||||+
T Consensus 101 c-VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g~LP~p~~sv~~l~~~F-~~~Gf~~~E~VaLsGAHTiG~ 178 (328)
T cd00692 101 N-VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDGLVPEPFDSVDKILARF-ADAGFSPDELVALLAAHSVAA 178 (328)
T ss_pred C-cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcccCCCCCCCCHHHHHHHH-HHcCCCHHHHhhhcccccccc
Confidence 5 9999999999999999 579999999999999999999999999999999999999 999999999999999999999
Q ss_pred cccCCCCCCC-CCCCCCCccCHHHHHHHHhC
Q 028643 168 CHKERSGFEG-PWTRNPLIFDNSYFTYVSLV 197 (206)
Q Consensus 168 ~~~~~~~~~~-~~~~tp~~fDn~Yy~~ll~~ 197 (206)
+|...+...+ +|+.||.+|||+||+|++.+
T Consensus 179 a~~~Dps~~g~p~D~TP~~FDn~Yf~~ll~~ 209 (328)
T cd00692 179 QDFVDPSIAGTPFDSTPGVFDTQFFIETLLK 209 (328)
T ss_pred cCCCCCCCCCCCCCCCcchhcHHHHHHHHHc
Confidence 9975554444 89999999999999998843
No 9
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=2.9e-51 Score=352.62 Aligned_cols=171 Identities=30% Similarity=0.465 Sum_probs=150.1
Q ss_pred hcCCchhhHHHHHhhccccccCcCCCCCCCCcccchHHhhccccCchH--HHHHHHHHHHHhCCCCcHHHHHhhhcccee
Q 028643 28 AEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLD--IAVRLLEPFKEQFPTISYADLYQLAGVVGV 105 (206)
Q Consensus 28 ~~~~~a~~llRl~FHDc~~~d~s~~~gG~dgSi~~~~E~~~~~N~gl~--~~~~~i~~ik~~~~~VS~ADiialAa~~av 105 (206)
.++.++++||||+||||++||...+.|||||||++ |...++|.|+. ..++.++.|+. +.|||||||||||++||
T Consensus 37 ~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIll--e~~~~En~G~~~n~~l~~~~~i~~--~~VScADiialAa~~AV 112 (264)
T cd08201 37 PGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQY--ELDRPENIGSGFNTTLNFFVNFYS--PRSSMADLIAMGVVTSV 112 (264)
T ss_pred CCccHHHHHHHHHHHhhcCcccCCCCCCCCcceee--cCCChhhccCchhhccccceeecc--CccCHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999998 56778888764 33444444432 57999999999999999
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCChhhhhHhcC-cccCcccccCCC------CCC--
Q 028643 106 EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSG-GHTLGRCHKERS------GFE-- 176 (206)
Q Consensus 106 ~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaL~G-aHTiG~~~~~~~------~~~-- 176 (206)
+.+|||.|+|++||+|++++.+.+ ||.|+.++++|++.| +++||+.+|||+|+| |||||++||..+ ++.
T Consensus 113 ~~~GGP~i~v~~GR~Da~~s~~~g-lP~P~~~v~~l~~~F-a~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~~g~~~~ 190 (264)
T cd08201 113 ASCGGPVVPFRAGRIDATEAGQAG-VPEPQTDLGTTTESF-RRQGFSTSEMIALVACGHTLGGVHSEDFPEIVPPGSVPD 190 (264)
T ss_pred HHcCCCeecccccCCCcccccccc-CCCCccCHHHHHHHH-HHcCCChHHHheeecCCeeeeecccccchhhcCCccccC
Confidence 999999999999999999998876 999999999999999 999999999999995 999999999765 333
Q ss_pred C--CCCCCCCccCHHHHHHHHhCCC--CCCCC
Q 028643 177 G--PWTRNPLIFDNSYFTYVSLVSL--PDMFG 204 (206)
Q Consensus 177 ~--~~~~tp~~fDn~Yy~~ll~~~~--p~~~g 204 (206)
+ +|++||.+|||+||.+++++.+ |+|++
T Consensus 191 ~~~p~dstp~~FDn~~f~E~l~g~~~~~L~~~ 222 (264)
T cd08201 191 TVLQFFDTTIQFDNKVVTEYLSGTTNNPLVVG 222 (264)
T ss_pred CCCCCCCCccccchHHHHHHhcCCCCCceeec
Confidence 3 8999999999999999999887 66664
No 10
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=5.5e-50 Score=345.02 Aligned_cols=182 Identities=44% Similarity=0.721 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHhhhhhcCCchhhHHHHHhhccccccCcC-CCCCCCCcccchHHhhccccCchHHHHHHHHHHHHhCC-
Q 028643 12 YKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKT-KTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP- 89 (206)
Q Consensus 12 v~~~v~~~~~~i~~~~~~~~~a~~llRl~FHDc~~~d~s~-~~gG~dgSi~~~~E~~~~~N~gl~~~~~~i~~ik~~~~- 89 (206)
|++.|++. +.+++.+++++|||+||||++|+..+ ..|||||||++.+|+++++|.+|.+++++|++||.+++
T Consensus 3 v~~~l~~~------~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~e~~~~~N~~l~~~~~~l~~ik~~~~~ 76 (255)
T cd00314 3 IKAILEDL------ITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEPELDRPENGGLDKALRALEPIKSAYDG 76 (255)
T ss_pred HHHHHHHH------HHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccccccCcccccHHHHHHHHHHHHHHcCC
Confidence 55666655 44588999999999999999998886 78999999999999999999999899999999999985
Q ss_pred --CCcHHHHHhhhccceeecc--CCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCHHHHHHHHHHhcCCChhhhhHhc
Q 028643 90 --TISYADLYQLAGVVGVEVT--GGPDIPFHPGRDDKA-----EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS 160 (206)
Q Consensus 90 --~VS~ADiialAa~~av~~~--GGP~~~v~~GR~D~~-----~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaL~ 160 (206)
+|||||||++|+++||+.+ |||.|+|++||+|+. .+.|.+++|.|..+++++++.| .++||+++|||||+
T Consensus 77 ~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F-~~~Gl~~~e~VAL~ 155 (255)
T cd00314 77 GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKF-KRMGLSPSELVALS 155 (255)
T ss_pred CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHH-HHcCCCHHHHHhhc
Confidence 8999999999999999999 999999999999998 4567788899999999999999 89999999999999
Q ss_pred -CcccC-cccccCCCCCC--CCCCCCCCccCHHHHHHHHhCCCC
Q 028643 161 -GGHTL-GRCHKERSGFE--GPWTRNPLIFDNSYFTYVSLVSLP 200 (206)
Q Consensus 161 -GaHTi-G~~~~~~~~~~--~~~~~tp~~fDn~Yy~~ll~~~~p 200 (206)
|+||| |++||..++.. ..|+.||.+|||+||++|+.++|.
T Consensus 156 ~GaHti~G~~~~~~~~~~~~~~~~~tp~~fDN~yy~~l~~~~~~ 199 (255)
T cd00314 156 AGAHTLGGKNHGDLLNYEGSGLWTSTPFTFDNAYFKNLLDMNWE 199 (255)
T ss_pred cCCeeccCcccCCCCCcccCCCCCCCCCccchHHHHHHhcCCcc
Confidence 99999 99999776544 578899999999999999999964
No 11
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=5.1e-47 Score=342.05 Aligned_cols=186 Identities=40% Similarity=0.672 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHhhhhhcC---------CchhhHHHHHhhccccccCcCCCCCCC-CcccchHHhhccccCchHHHHHHHH
Q 028643 13 KKAVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLE 82 (206)
Q Consensus 13 ~~~v~~~~~~i~~~~~~~---------~~a~~llRl~FHDc~~~d~s~~~gG~d-gSi~~~~E~~~~~N~gl~~~~~~i~ 82 (206)
+-.+++++++|++++++. .++|.+|||+||++.|||.++++||++ |+|+|.+|.+++.|.+|.+++.+|+
T Consensus 41 ~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~pe~~~~~N~gL~~a~~~L~ 120 (409)
T cd00649 41 KLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFAPLNSWPDNVNLDKARRLLW 120 (409)
T ss_pred hccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccccccCcHhhhhHHHHHHHHH
Confidence 344677899999999875 689999999999999999999999998 7999999999999999999999999
Q ss_pred HHHHhCC-CCcHHHHHhhhccceeeccCCCCCCCCCCCCCCCCCC-----------------------------------
Q 028643 83 PFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP----------------------------------- 126 (206)
Q Consensus 83 ~ik~~~~-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~----------------------------------- 126 (206)
+||+++| .||+||+|+||+.+|||.+|||.|+|.+||.|...+.
T Consensus 121 pik~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~mgli 200 (409)
T cd00649 121 PIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQMGLI 200 (409)
T ss_pred HHHHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhhhhcccc
Confidence 9999998 7999999999999999999999999999999996532
Q ss_pred ---CCC--CCCCCCCCHHHHHHHHHHhcCCChhhhhHh-cCcccCcccccCC----------------------------
Q 028643 127 ---QEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCHKER---------------------------- 172 (206)
Q Consensus 127 ---~~~--~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaL-~GaHTiG~~~~~~---------------------------- 172 (206)
+++ .||.|..++.+|++.| .+||||.+||||| +||||||++||..
T Consensus 201 yv~Pegp~gLPdP~~sa~~LR~~F-~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg~dP~~~~~~~~gLgw~~~Cp~g 279 (409)
T cd00649 201 YVNPEGPDGNPDPLAAAKDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGPASHVGPEPEAAPIEQQGLGWKNSYGTG 279 (409)
T ss_pred ccCCCCCCCCCCCccCHHHHHHHH-HHcCCCHHHHeeeccCCcceeecCcccccccCCCCCCcCHHHHHhhcccccCCCC
Confidence 233 6999999999999999 9999999999999 5999999999942
Q ss_pred -------CCCCCCCCCCCCccCHHHHHHHHhCCC
Q 028643 173 -------SGFEGPWTRNPLIFDNSYFTYVSLVSL 199 (206)
Q Consensus 173 -------~~~~~~~~~tp~~fDn~Yy~~ll~~~~ 199 (206)
+++.|+|+.||.+|||+||++|+..+|
T Consensus 280 ~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW 313 (409)
T cd00649 280 KGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEW 313 (409)
T ss_pred CCCCCccccCCCCCCCCcchhhHHHHHHHHhccc
Confidence 256678999999999999999999553
No 12
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=3.2e-45 Score=348.71 Aligned_cols=184 Identities=39% Similarity=0.663 Sum_probs=166.2
Q ss_pred HHHHHHHHHhhhhhcC---------CchhhHHHHHhhccccccCcCCCCCCC-CcccchHHhhccccCchHHHHHHHHHH
Q 028643 15 AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPF 84 (206)
Q Consensus 15 ~v~~~~~~i~~~~~~~---------~~a~~llRl~FHDc~~~d~s~~~gG~d-gSi~~~~E~~~~~N~gl~~~~~~i~~i 84 (206)
.++.+|++|++++++. .++|.+|||+||++.||+.++++||++ |+|+|.+|++++.|.+|.+++.+|++|
T Consensus 53 d~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~P~~sw~~N~~Ldka~~lL~pI 132 (716)
T TIGR00198 53 DLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFAPLNSWPDNVNLDKARRLLWPI 132 (716)
T ss_pred cHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecccccCchhhhhHHHHHHHHHHH
Confidence 3455899999999875 589999999999999999999999997 799999999999999999999999999
Q ss_pred HHhCC-CCcHHHHHhhhccceeeccCCCCCCCCCCCCCCCCCC-------------------------------------
Q 028643 85 KEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP------------------------------------- 126 (206)
Q Consensus 85 k~~~~-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~------------------------------------- 126 (206)
|++|| .|||||||+||+++||+.+|||.|+|.+||+|++.+.
T Consensus 133 k~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~Gliyvn 212 (716)
T TIGR00198 133 KKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEMGLIYVN 212 (716)
T ss_pred HHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhhhccccccC
Confidence 99998 8999999999999999999999999999999994321
Q ss_pred CCC--CCCCCCCCHHHHHHHHHHhcCCChhhhhHhc-CcccCcccccCC-------------------------------
Q 028643 127 QEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLGRCHKER------------------------------- 172 (206)
Q Consensus 127 ~~~--~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaL~-GaHTiG~~~~~~------------------------------- 172 (206)
+++ .+|.|..++.+|++.| .++|||.+|||||+ ||||||++||..
T Consensus 213 peg~~~lPdP~~sa~~Lrd~F-~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rlg~dP~~~~~~~~gLg~~c~~~~g~g~ 291 (716)
T TIGR00198 213 PEGPDGHPDPLCTAQDIRTTF-ARMGMNDEETVALIAGGHTVGKCHGAGPAELIGPDPEGAPIEEQGLGWHNQYGKGVGR 291 (716)
T ss_pred cccccCCCCCCCCHHHHHHHH-HHcCCChHHHeeeecCceeccccCCCcccccCCCCCCcCHHHHHHhcccCCCCCCCCC
Confidence 122 5999999999999999 99999999999995 999999999941
Q ss_pred ----CCCCCCCCCCCCccCHHHHHHHHhCCC
Q 028643 173 ----SGFEGPWTRNPLIFDNSYFTYVSLVSL 199 (206)
Q Consensus 173 ----~~~~~~~~~tp~~fDn~Yy~~ll~~~~ 199 (206)
+++.|+|+.||.+|||+||++|+.+.|
T Consensus 292 dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w 322 (716)
T TIGR00198 292 DTMTSGLEVAWTTTPTQWDNGYFYMLFNYEW 322 (716)
T ss_pred CcccccCCCCCCCCCCccchHHHHHHhcCCc
Confidence 244578999999999999999998753
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1e-42 Score=330.26 Aligned_cols=186 Identities=40% Similarity=0.670 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHhhhhhcC---------CchhhHHHHHhhccccccCcCCCCCCC-CcccchHHhhccccCchHHHHHHHH
Q 028643 13 KKAVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLE 82 (206)
Q Consensus 13 ~~~v~~~~~~i~~~~~~~---------~~a~~llRl~FHDc~~~d~s~~~gG~d-gSi~~~~E~~~~~N~gl~~~~~~i~ 82 (206)
.-.++++|++|+++++++ .++|.+|||+||++.|||.++++||++ |+|+|.+|.+++.|.+|.+++.+|+
T Consensus 53 ~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~pe~~w~~N~gL~ka~~~L~ 132 (726)
T PRK15061 53 KLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNVNLDKARRLLW 132 (726)
T ss_pred hhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCcccccchhhhhHHHHHHHHH
Confidence 445677899999999875 589999999999999999999999998 7999999999999999999999999
Q ss_pred HHHHhCC-CCcHHHHHhhhccceeeccCCCCCCCCCCCCCCCCCCC----------------------------------
Q 028643 83 PFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ---------------------------------- 127 (206)
Q Consensus 83 ~ik~~~~-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~---------------------------------- 127 (206)
+||+++| .||+||+|+||+.+|||.+|||.|+|.+||.|.+.+..
T Consensus 133 pik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~mgl 212 (726)
T PRK15061 133 PIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAVQMGL 212 (726)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchhhhhccc
Confidence 9999998 89999999999999999999999999999999865321
Q ss_pred -----C--CCCCCCCCCHHHHHHHHHHhcCCChhhhhHhc-CcccCcccccCC---------------------------
Q 028643 128 -----E--GRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLGRCHKER--------------------------- 172 (206)
Q Consensus 128 -----~--~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaL~-GaHTiG~~~~~~--------------------------- 172 (206)
+ .-+|.|..++.+|++.| .+||||.+|||||+ ||||||++||..
T Consensus 213 iyvnpegp~glPdP~~sa~~lR~tF-~RMGmnDeEtVALiaGgHT~GkaHca~~~~rlgpdP~~a~~~~qgLgw~~~c~~ 291 (726)
T PRK15061 213 IYVNPEGPNGNPDPLAAARDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGDASHVGPEPEAAPIEEQGLGWKNSYGS 291 (726)
T ss_pred eecCCCCCCCCCCcccCHHHHHHHH-HHcCCCHHHheeeccCCceeeeCCCcCcccccCCCCCcCHHHHHhccccccCCC
Confidence 1 12799999999999999 99999999999995 999999999942
Q ss_pred --------CCCCCCCCCCCCccCHHHHHHHHhCCC
Q 028643 173 --------SGFEGPWTRNPLIFDNSYFTYVSLVSL 199 (206)
Q Consensus 173 --------~~~~~~~~~tp~~fDn~Yy~~ll~~~~ 199 (206)
+++.|+|+.||.+|||+||++|+.+.|
T Consensus 292 g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W 326 (726)
T PRK15061 292 GKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEW 326 (726)
T ss_pred CCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcc
Confidence 245678999999999999999999754
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=7.4e-40 Score=285.24 Aligned_cols=180 Identities=28% Similarity=0.439 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHhhhhhcCCchhhHHHHHhhccccccCcCCCCCCCCc-ccchHHhhccccCc--hHHHHHHHHHHHHhCC
Q 028643 13 KKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANNG--LDIAVRLLEPFKEQFP 89 (206)
Q Consensus 13 ~~~v~~~~~~i~~~~~~~~~a~~llRl~FHDc~~~d~s~~~gG~dgS-i~~~~E~~~~~N~g--l~~~~~~i~~ik~~~~ 89 (206)
.+.|+..|++ ++...-+++.+|||+||++.||+.++++||++|+ |+|.+|++++.|.+ |.+++.++++||.++|
T Consensus 13 ~~di~~lk~~---i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~pe~~w~~N~~~~L~~~~~~Le~ik~~~~ 89 (297)
T cd08200 13 DADIAALKAK---ILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLAPQKDWEVNEPEELAKVLAVLEGIQKEFN 89 (297)
T ss_pred HHHHHHHHHH---HHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCccccCcCccCcHHHHHHHHHHHHHHHHhc
Confidence 4566666666 5555678999999999999999999999999985 99999999999999 9999999999999997
Q ss_pred -------CCcHHHHHhhhccceeeccCC-----CCCCCCCCCCCCCCCCC--C---CCCCCCC------------CCHHH
Q 028643 90 -------TISYADLYQLAGVVGVEVTGG-----PDIPFHPGRDDKAEPPQ--E---GRLPDAK------------QGNDH 140 (206)
Q Consensus 90 -------~VS~ADiialAa~~av~~~GG-----P~~~v~~GR~D~~~s~~--~---~~lP~p~------------~~~~~ 140 (206)
.||.||+|+||+..|||.+|| |.|+|.+||.|.+.+.. + .++|.+. ...+.
T Consensus 90 ~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~ 169 (297)
T cd08200 90 ESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEM 169 (297)
T ss_pred ccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHH
Confidence 799999999999999999999 99999999999987532 1 2345432 23478
Q ss_pred HHHHHHHhcCCChhhhhHhcCcc-cCcccccCCCCCCCCCCCCCCccCHHHHHHHHhCC
Q 028643 141 LRQVFGAQMGLSDKDIVALSGGH-TLGRCHKERSGFEGPWTRNPLIFDNSYFTYVSLVS 198 (206)
Q Consensus 141 l~~~F~~~~Gl~~~d~VaL~GaH-TiG~~~~~~~~~~~~~~~tp~~fDn~Yy~~ll~~~ 198 (206)
|++.| .++|||++|||||+||| ++|+.|. ++ +.|+|+.+|.+|||+||++|++++
T Consensus 170 Lrd~f-~rlglsd~EmvaL~Gg~r~lG~~~~-~s-~~G~wT~~p~~f~N~fF~nLLd~~ 225 (297)
T cd08200 170 LVDKA-QLLTLTAPEMTVLVGGLRVLGANYG-GS-KHGVFTDRPGVLTNDFFVNLLDMS 225 (297)
T ss_pred HHHHH-HhCCCChHHHhheecchhhcccCCC-CC-CCCCCcCCCCccccHHHHHHhccc
Confidence 99999 99999999999999998 6998886 44 469999999999999999999864
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.7e-35 Score=282.29 Aligned_cols=181 Identities=27% Similarity=0.418 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHhhhhhcCCchhhHHHHHhhccccccCcCCCCCCCCc-ccchHHhhcccc--CchHHHHHHHHHHHHhC
Q 028643 12 YKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSAN--NGLDIAVRLLEPFKEQF 88 (206)
Q Consensus 12 v~~~v~~~~~~i~~~~~~~~~a~~llRl~FHDc~~~d~s~~~gG~dgS-i~~~~E~~~~~N--~gl~~~~~~i~~ik~~~ 88 (206)
|++.|...|++ ++.+.-.++.||||+||++.|||.++++||++|+ |+|.+|++++.| .+|.+++.++++||+++
T Consensus 430 v~~di~~lk~~---i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~pe~~w~~N~p~gL~~vl~~Le~Ik~~f 506 (716)
T TIGR00198 430 SEGDIKELKQQ---ILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEPQKNWPVNEPTRLAKVLAVLEKIQAEF 506 (716)
T ss_pred HHHHHHHHHHH---HHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecchhcCcccCCHHHHHHHHHHHHHHHHHc
Confidence 46777766665 5566678999999999999999999999999985 999999999999 89999999999999999
Q ss_pred C--CCcHHHHHhhhccceeecc---CCC--CCCCCCCCCCCCCCC--CCCCCC---CC------------CCCHHHHHHH
Q 028643 89 P--TISYADLYQLAGVVGVEVT---GGP--DIPFHPGRDDKAEPP--QEGRLP---DA------------KQGNDHLRQV 144 (206)
Q Consensus 89 ~--~VS~ADiialAa~~av~~~---GGP--~~~v~~GR~D~~~s~--~~~~lP---~p------------~~~~~~l~~~ 144 (206)
| .||.||+|+||+.+|||.+ ||| .++|.+||.|.+... ++...| .+ ......|++.
T Consensus 507 ~~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~ 586 (716)
T TIGR00198 507 AKGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVTPEELLLDK 586 (716)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCCHHHHHHHH
Confidence 9 8999999999999999998 898 589999999998753 222222 11 2245678999
Q ss_pred HHHhcCCChhhhhHhcCcc-cCcccccCCCCCCCCCCCCCCccCHHHHHHHHhCC
Q 028643 145 FGAQMGLSDKDIVALSGGH-TLGRCHKERSGFEGPWTRNPLIFDNSYFTYVSLVS 198 (206)
Q Consensus 145 F~~~~Gl~~~d~VaL~GaH-TiG~~~~~~~~~~~~~~~tp~~fDn~Yy~~ll~~~ 198 (206)
| .++|||+.|||||+||| ++|++|.. + +.|+|+.+|.+|||+||++||+++
T Consensus 587 a-~~lglt~~EmvaL~Gg~r~lG~~~~~-s-~~G~~T~~p~~f~NdfF~~LLd~~ 638 (716)
T TIGR00198 587 A-QLLTLTAPEMTVLIGGMRVLGANHGG-S-KHGVFTDRVGVLSNDFFVNLLDMA 638 (716)
T ss_pred H-HhCCCChHHHHheecchhhccccCCC-C-CCCCCcCCCCccccHHHHHHhcCC
Confidence 9 99999999999999995 99999973 3 469999999999999999999965
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.8e-34 Score=274.18 Aligned_cols=180 Identities=28% Similarity=0.445 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHhhhhhcCCchhhHHHHHhhccccccCcCCCCCCCCc-ccchHHhhccccC--chHHHHHHHHHHHHhC-
Q 028643 13 KKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANN--GLDIAVRLLEPFKEQF- 88 (206)
Q Consensus 13 ~~~v~~~~~~i~~~~~~~~~a~~llRl~FHDc~~~d~s~~~gG~dgS-i~~~~E~~~~~N~--gl~~~~~~i~~ik~~~- 88 (206)
...|...|.+ ++...-..+.|||++||++.|||.++++||++|+ |+|.+|++++.|. +|.+++.++++||+++
T Consensus 438 ~~di~~lk~~---i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~ 514 (726)
T PRK15061 438 DADIAALKAK---ILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNEPAQLAKVLAVLEGIQAEFN 514 (726)
T ss_pred HHHHHHHHHH---HHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecccccCccccCHHHHHHHHHHHHHHHHHHh
Confidence 3456666655 5555667999999999999999999999999985 9999999999999 9999999999999997
Q ss_pred ------CCCcHHHHHhhhccceeecc---CC--CCCCCCCCCCCCCCCCC--C---CCCCCCC------------CCHHH
Q 028643 89 ------PTISYADLYQLAGVVGVEVT---GG--PDIPFHPGRDDKAEPPQ--E---GRLPDAK------------QGNDH 140 (206)
Q Consensus 89 ------~~VS~ADiialAa~~av~~~---GG--P~~~v~~GR~D~~~s~~--~---~~lP~p~------------~~~~~ 140 (206)
|.||.||+|+||+..|||.+ || |.|+|.+||.|.+.... + .++|... .....
T Consensus 515 ~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~ 594 (726)
T PRK15061 515 AAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEEL 594 (726)
T ss_pred hccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHH
Confidence 68999999999999999998 58 99999999999987632 2 2456543 23478
Q ss_pred HHHHHHHhcCCChhhhhHhcCcc-cCcccccCCCCCCCCCCCCCCccCHHHHHHHHhCC
Q 028643 141 LRQVFGAQMGLSDKDIVALSGGH-TLGRCHKERSGFEGPWTRNPLIFDNSYFTYVSLVS 198 (206)
Q Consensus 141 l~~~F~~~~Gl~~~d~VaL~GaH-TiG~~~~~~~~~~~~~~~tp~~fDn~Yy~~ll~~~ 198 (206)
|++.| .++|||+.|||||+||| ++|..|. ++ +.|+|+.+|.+|||+||++|++++
T Consensus 595 L~d~a-~~lglt~~EmvaL~Gg~r~Lg~~~~-~S-~~G~~T~~p~~fsNdfFvnLLdm~ 650 (726)
T PRK15061 595 LVDKA-QLLTLTAPEMTVLVGGLRVLGANYG-GS-KHGVFTDRPGVLTNDFFVNLLDMG 650 (726)
T ss_pred HHHHH-HhCCCChHHHhheecchhhcccCCC-CC-CCCCCcCCCCccccHHHHHHhcCC
Confidence 99999 99999999999999997 6888884 34 569999999999999999999864
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=239.78 Aligned_cols=184 Identities=39% Similarity=0.666 Sum_probs=163.7
Q ss_pred HHHHHHHHHhhhhhcC---------CchhhHHHHHhhccccccCcCCCCCCC-CcccchHHhhccccCchHHHHHHHHHH
Q 028643 15 AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPF 84 (206)
Q Consensus 15 ~v~~~~~~i~~~~~~~---------~~a~~llRl~FHDc~~~d~s~~~gG~d-gSi~~~~E~~~~~N~gl~~~~~~i~~i 84 (206)
.+.+.|++|.++..+. ...|.+|||+||-+++|+..+++||.. |..+|.++.++|.|.+|++++.+|.+|
T Consensus 68 D~~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFaPlnSWPDN~nLDKarRLLWPI 147 (730)
T COG0376 68 DLAAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNANLDKARRLLWPI 147 (730)
T ss_pred cHHHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceecccccCCCcccchHHHHHHhhhH
Confidence 4455888999888775 368999999999999999999999988 699999999999999999999999999
Q ss_pred HHhCC-CCcHHHHHhhhccceeeccCCCCCCCCCCCCCCCCCCC------------------------------------
Q 028643 85 KEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ------------------------------------ 127 (206)
Q Consensus 85 k~~~~-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~------------------------------------ 127 (206)
|.+|+ .||+||+|.|++.+|++.+|++.+.|..||.|-+.+..
T Consensus 148 KkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIYV 227 (730)
T COG0376 148 KKKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIYV 227 (730)
T ss_pred hHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeeeEEe
Confidence 99999 99999999999999999999999999999999877632
Q ss_pred --C--CCCCCCCCCHHHHHHHHHHhcCCChhhhhHhc-CcccCcccccCC------------------------------
Q 028643 128 --E--GRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLGRCHKER------------------------------ 172 (206)
Q Consensus 128 --~--~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaL~-GaHTiG~~~~~~------------------------------ 172 (206)
+ +-.|+|..+..+++..| ++|+++.+|.|||+ ||||+|.+|...
T Consensus 228 NPEGpng~PDpl~aA~dIRetF-aRMaMNDeETVALiaGGHtfGKtHGag~a~~vg~ePe~a~ie~qGlGW~~~~g~G~G 306 (730)
T COG0376 228 NPEGPNGNPDPLAAARDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGPASNVGPEPEAAPIEQQGLGWANTYGSGKG 306 (730)
T ss_pred CCCCCCCCCChhhhHHHHHHHH-HHhcCCcHhhhhhhhcccccccccCCCchhhcCCCccccchhhhccccccccCCCcC
Confidence 1 23688888899999999 99999999999998 699999999632
Q ss_pred -----CCCCCCCCCCCCccCHHHHHHHHhCCC
Q 028643 173 -----SGFEGPWTRNPLIFDNSYFTYVSLVSL 199 (206)
Q Consensus 173 -----~~~~~~~~~tp~~fDn~Yy~~ll~~~~ 199 (206)
+|..++|+.+|.+|||+||.+|+...|
T Consensus 307 ~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEW 338 (730)
T COG0376 307 PDTITSGLEGAWTTTPTQWSNEFFENLFNYEW 338 (730)
T ss_pred cccccccccccCCCCcchhhhHHHHHHhccce
Confidence 122467999999999999999999886
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.60 E-value=1.9e-15 Score=139.88 Aligned_cols=181 Identities=27% Similarity=0.420 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHhhhhhcCCchhhHHHHHhhccccccCcCCCCCCCC-cccchHHhhccccC--chHHHHHHHHHHHHhC
Q 028643 12 YKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAEQAHSANN--GLDIAVRLLEPFKEQF 88 (206)
Q Consensus 12 v~~~v~~~~~~i~~~~~~~~~a~~llRl~FHDc~~~d~s~~~gG~dg-Si~~~~E~~~~~N~--gl~~~~~~i~~ik~~~ 88 (206)
+.+.|...|.+ ++.+.-....||-.+|-.+.+|..|++.||+|| .|++.+.++++.|. .|.+.+.+++.|...+
T Consensus 447 ~d~di~~lK~~---IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLaPqkdWevN~P~~l~kvl~~le~iq~~f 523 (730)
T COG0376 447 VDADIAALKAK---ILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNQPAELAKVLAVLEKIQKEF 523 (730)
T ss_pred chHHHHHHHHH---HHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeecccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34566666655 666666789999999999999999999999997 99999999999995 5668999999999988
Q ss_pred C-CCcHHHHHhhhccceeecc---CCC--CCCCCCCCCCCCCCCC--C---CCCC------------CCCCCHHHHHHHH
Q 028643 89 P-TISYADLYQLAGVVGVEVT---GGP--DIPFHPGRDDKAEPPQ--E---GRLP------------DAKQGNDHLRQVF 145 (206)
Q Consensus 89 ~-~VS~ADiialAa~~av~~~---GGP--~~~v~~GR~D~~~s~~--~---~~lP------------~p~~~~~~l~~~F 145 (206)
. .||.||+|+|++..+|+.+ .|- .+||.+||.|++.... + ..-| .....-.-|+++-
T Consensus 524 nkkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkA 603 (730)
T COG0376 524 NKKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKA 603 (730)
T ss_pred cCccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHHHH
Confidence 7 7999999999999999864 454 4688999999976521 1 1111 1222345578887
Q ss_pred HHhcCCChhhhhHhcCccc-CcccccCCCCCCCCCCCCCCccCHHHHHHHHhCC
Q 028643 146 GAQMGLSDKDIVALSGGHT-LGRCHKERSGFEGPWTRNPLIFDNSYFTYVSLVS 198 (206)
Q Consensus 146 ~~~~Gl~~~d~VaL~GaHT-iG~~~~~~~~~~~~~~~tp~~fDn~Yy~~ll~~~ 198 (206)
+.++|+..||++|.||-. +|.-+.. .-+|.|+..|..+.|.||.||+.+.
T Consensus 604 -qlL~LtapemtVLiGGlRvLg~n~g~--s~~GVfT~~pg~LtndFFvnLlDM~ 654 (730)
T COG0376 604 -QLLTLTAPEMTVLIGGLRVLGANYGG--SKHGVFTDRPGVLTNDFFVNLLDMG 654 (730)
T ss_pred -HHhccCCccceEEEcceEeeccCCCC--CccceeccCcccccchhhhhhhhcc
Confidence 889999999999998875 3433321 1246889999999999999999987
No 19
>PF09027 GTPase_binding: GTPase binding; InterPro: IPR015116 The GTPase binding domain binds to the G protein Cdc42, inhibiting both its intrinsic and stimulated GTPase activity. The domain is largely unstructured in the absence of Cdc42 []. ; PDB: 1CF4_B.
Probab=60.87 E-value=2.6 Score=29.41 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=4.5
Q ss_pred CCCCccCHHHHHHHHhCCCCCCCCC
Q 028643 181 RNPLIFDNSYFTYVSLVSLPDMFGS 205 (206)
Q Consensus 181 ~tp~~fDn~Yy~~ll~~~~p~~~g~ 205 (206)
++|..|||.|+. ++-|.|+++
T Consensus 31 g~~~~idn~yl~----mdp~~~~~~ 51 (66)
T PF09027_consen 31 GSPSEIDNNYLN----MDPIDMAYN 51 (66)
T ss_dssp -SS----TTT---------------
T ss_pred CChhhhhhhhhc----ccccchhhc
Confidence 578999999987 555666654
No 20
>PF15656 Tox-HDC: Toxin with a H, D/N and C signature
Probab=37.09 E-value=35 Score=26.51 Aligned_cols=55 Identities=22% Similarity=0.231 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCC--hhhhhHhcCcccCcccccCCCCCCCCCCCCCCccCHHHHHHHHh
Q 028643 138 NDHLRQVFGAQMGLS--DKDIVALSGGHTLGRCHKERSGFEGPWTRNPLIFDNSYFTYVSL 196 (206)
Q Consensus 138 ~~~l~~~F~~~~Gl~--~~d~VaL~GaHTiG~~~~~~~~~~~~~~~tp~~fDn~Yy~~ll~ 196 (206)
+..-++.+ +++++ ..++++|||.| |..+..+.-.....-..|..-++.||.+=++
T Consensus 14 i~~pl~~I--ar~~s~~~~~I~IlSGtH--G~~~G~nw~~~~~~~R~p~l~e~~f~~eD~~ 70 (119)
T PF15656_consen 14 INAPLETI--ARRPSGDNGDIHILSGTH--GYCSGQNWLSESNRLRRPGLKEKAFYKEDLR 70 (119)
T ss_pred hHHHHHHH--HhCcCCCCCCEEEEeCCC--CCccccchhhccccccCchhhhhhHHHHHHH
Confidence 44555666 35555 89999999998 3333211000011124688888888877654
No 21
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=34.70 E-value=28 Score=23.16 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=22.6
Q ss_pred HHhhhcc---ceeeccCCCCCCCCCCCCCCCCC
Q 028643 96 LYQLAGV---VGVEVTGGPDIPFHPGRDDKAEP 125 (206)
Q Consensus 96 iialAa~---~av~~~GGP~~~v~~GR~D~~~s 125 (206)
+++||+. |-...+.||.+++..||--..-|
T Consensus 9 ~l~La~CqT~D~lAtckGpiFpLNVgrWqptps 41 (55)
T PRK13859 9 ALALAGCQTNDTLASCKGPIFPLNVGRWQPTPS 41 (55)
T ss_pred HHHHHhccccCccccccCCccccccccccCChh
Confidence 5667764 45677899999999999775544
No 22
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=31.99 E-value=29 Score=21.12 Aligned_cols=15 Identities=47% Similarity=0.749 Sum_probs=11.9
Q ss_pred HhcCCChhhhh-HhcC
Q 028643 147 AQMGLSDKDIV-ALSG 161 (206)
Q Consensus 147 ~~~Gl~~~d~V-aL~G 161 (206)
...||+++|.| ||+|
T Consensus 19 e~l~LtpEDAvEaLi~ 34 (35)
T PF08383_consen 19 EALGLTPEDAVEALIG 34 (35)
T ss_pred hhcCCCHHHHHHHHhc
Confidence 46799999988 7765
No 23
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=28.85 E-value=29 Score=27.55 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHhcCCChhhh-hHhcCcccCccccc
Q 028643 136 QGNDHLRQVFGAQMGLSDKDI-VALSGGHTLGRCHK 170 (206)
Q Consensus 136 ~~~~~l~~~F~~~~Gl~~~d~-VaL~GaHTiG~~~~ 170 (206)
+++.+.+-.| +++||++.++ |.|--+|-||.++-
T Consensus 31 ddvkeqI~K~-akKGltpsqIGviLRDshGi~q~r~ 65 (151)
T KOG0400|consen 31 DDVKEQIYKL-AKKGLTPSQIGVILRDSHGIGQVRF 65 (151)
T ss_pred HHHHHHHHHH-HHcCCChhHceeeeecccCcchhhe
Confidence 3566677788 9999999997 56779999998874
No 24
>TIGR01911 HesB_rel_seleno HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.
Probab=25.53 E-value=23 Score=25.82 Aligned_cols=32 Identities=19% Similarity=0.417 Sum_probs=19.9
Q ss_pred HHHHHHHhhhhhcCCchhhHHHHHhhccccccCcCCCCCCCC
Q 028643 17 EKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFG 58 (206)
Q Consensus 17 ~~~~~~i~~~~~~~~~a~~llRl~FHDc~~~d~s~~~gG~dg 58 (206)
++|.++|++++++....+..||+.+- .|||.|
T Consensus 8 ~~A~~~i~~ll~~~~~~~~~LRi~v~----------~gGCsG 39 (92)
T TIGR01911 8 DDAYEEFKDFLKENDIDNDVIRIHFA----------GMGCMG 39 (92)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEEe----------CCCccC
Confidence 34566667677554444345898763 378877
No 25
>COG4982 3-oxoacyl-[acyl-carrier protein]
Probab=23.68 E-value=19 Score=35.74 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=35.6
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCChhhhhHhcCcccCcccccCCCCCCCCCCCCCCccCHHHHHHH
Q 028643 129 GRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRNPLIFDNSYFTYV 194 (206)
Q Consensus 129 ~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaL~GaHTiG~~~~~~~~~~~~~~~tp~~fDn~Yy~~l 194 (206)
.++|+|.....+..--+....-++.+|||++.|+--+| ||.++-.+||-.||-++
T Consensus 693 ~alpsp~~~~~q~~~~p~~~l~~d~e~~vVivG~aEvg-----------pwGSsRTRfemE~~gel 747 (866)
T COG4982 693 AALPSPPRPFTQTPPQPRANLKVDFEDVVVIVGFAEVG-----------PWGSSRTRFEMEVEGEL 747 (866)
T ss_pred ccCCCCCCCccCCCCCchhhcccCHHHceEEecceecc-----------CccCccchhhhhhcccc
Confidence 35777765543322222266777889999999876554 66666677777777554
Done!