Query 028644
Match_columns 206
No_of_seqs 145 out of 1176
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 14:44:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00730 conserved hypothetic 100.0 9.2E-56 2E-60 362.1 20.7 178 15-192 1-178 (178)
2 COG1611 Predicted Rossmann fol 100.0 6.7E-46 1.5E-50 309.8 19.6 191 4-195 4-198 (205)
3 TIGR00725 conserved hypothetic 100.0 1.4E-42 3E-47 279.6 18.6 158 14-189 1-158 (159)
4 PF03641 Lysine_decarbox: Poss 100.0 7.9E-40 1.7E-44 256.3 14.6 131 59-189 1-133 (133)
5 TIGR00732 dprA DNA protecting 99.7 1.7E-15 3.6E-20 128.0 16.8 155 15-188 45-219 (220)
6 PF02481 DNA_processg_A: DNA r 99.4 3.3E-12 7.2E-17 107.4 12.2 143 14-166 44-206 (212)
7 PRK10736 hypothetical protein; 99.4 3E-11 6.5E-16 109.2 16.2 157 15-190 108-284 (374)
8 COG0758 Smf Predicted Rossmann 99.2 4E-10 8.7E-15 101.1 15.1 159 15-192 112-289 (350)
9 PF12694 MoCo_carrier: Putativ 97.2 0.0034 7.4E-08 49.8 9.2 93 49-148 1-98 (145)
10 KOG3614 Ca2+/Mg2+-permeable ca 95.9 0.14 3.1E-06 52.9 13.0 187 14-204 118-369 (1381)
11 PF05014 Nuc_deoxyrib_tr: Nucl 95.3 0.037 8E-07 41.5 4.8 46 98-149 49-98 (113)
12 PF06908 DUF1273: Protein of u 95.1 0.54 1.2E-05 38.6 11.6 117 27-148 20-168 (177)
13 PF13528 Glyco_trans_1_3: Glyc 95.1 0.58 1.3E-05 40.3 12.4 119 45-191 192-316 (318)
14 PF11071 DUF2872: Protein of u 93.9 1.1 2.3E-05 35.3 9.9 71 101-190 63-137 (141)
15 PRK10565 putative carbohydrate 93.1 0.46 9.9E-06 45.1 8.3 127 45-190 254-384 (508)
16 PF06258 Mito_fiss_Elm1: Mitoc 93.0 4.1 9E-05 36.2 13.8 78 107-193 225-309 (311)
17 TIGR01133 murG undecaprenyldip 93.0 4.9 0.00011 34.7 14.1 73 106-194 246-320 (348)
18 PF10686 DUF2493: Protein of u 92.5 1.1 2.4E-05 31.3 7.6 62 15-79 4-66 (71)
19 PRK13660 hypothetical protein; 92.4 5.5 0.00012 32.9 16.1 108 36-147 33-167 (182)
20 COG0707 MurG UDP-N-acetylgluco 92.3 0.6 1.3E-05 42.3 7.7 82 96-195 238-324 (357)
21 TIGR03646 YtoQ_fam YtoQ family 91.5 3.1 6.7E-05 32.8 9.7 74 101-190 66-140 (144)
22 COG3660 Predicted nucleoside-d 90.7 8.5 0.00018 34.1 12.6 132 11-170 158-296 (329)
23 cd03785 GT1_MurG MurG is an N- 90.3 11 0.00024 32.5 14.4 77 102-194 244-323 (350)
24 PLN02605 monogalactosyldiacylg 89.8 9.3 0.0002 34.2 12.8 72 103-194 275-346 (382)
25 cd03784 GT1_Gtf_like This fami 88.8 8.8 0.00019 34.1 11.9 72 106-194 300-371 (401)
26 PRK00025 lpxB lipid-A-disaccha 88.5 6.4 0.00014 34.7 10.7 31 105-146 256-286 (380)
27 PF04101 Glyco_tran_28_C: Glyc 88.3 1.1 2.4E-05 35.2 5.2 34 105-148 67-100 (167)
28 TIGR01426 MGT glycosyltransfer 87.9 7.8 0.00017 34.6 11.0 70 106-193 287-357 (392)
29 PRK12446 undecaprenyldiphospho 87.8 15 0.00033 32.9 12.7 73 106-193 248-323 (352)
30 COG1597 LCB5 Sphingosine kinas 86.9 1.4 3E-05 38.9 5.4 46 34-80 46-92 (301)
31 TIGR00215 lpxB lipid-A-disacch 86.6 15 0.00033 33.2 12.2 76 107-195 264-347 (385)
32 TIGR00661 MJ1255 conserved hyp 84.5 12 0.00026 32.7 10.1 54 103-167 240-293 (321)
33 TIGR03590 PseG pseudaminic aci 82.3 13 0.00028 32.1 9.4 36 102-148 233-268 (279)
34 COG2185 Sbm Methylmalonyl-CoA 81.9 4 8.7E-05 32.5 5.5 45 31-76 25-69 (143)
35 PF01256 Carb_kinase: Carbohyd 80.7 24 0.00051 30.2 10.2 125 49-192 2-134 (242)
36 PRK13609 diacylglycerol glucos 79.3 7.5 0.00016 34.5 7.0 73 102-194 265-337 (380)
37 PRK13608 diacylglycerol glucos 79.1 4.6 0.0001 36.4 5.7 72 102-193 265-336 (391)
38 TIGR00196 yjeF_cterm yjeF C-te 77.7 18 0.00038 31.0 8.7 44 103-150 85-128 (272)
39 COG3613 Nucleoside 2-deoxyribo 77.4 18 0.0004 29.6 8.0 53 101-159 59-119 (172)
40 PRK11914 diacylglycerol kinase 77.0 34 0.00073 29.7 10.4 37 11-48 5-41 (306)
41 PRK00696 sucC succinyl-CoA syn 76.6 59 0.0013 29.5 13.5 71 111-192 311-384 (388)
42 COG1819 Glycosyl transferases, 75.0 68 0.0015 29.4 12.3 128 42-193 234-366 (406)
43 PRK05749 3-deoxy-D-manno-octul 74.4 66 0.0014 28.9 15.6 81 94-194 304-387 (425)
44 COG1832 Predicted CoA-binding 73.8 6.6 0.00014 31.1 4.4 35 11-50 13-47 (140)
45 PRK00726 murG undecaprenyldiph 72.9 17 0.00038 31.7 7.5 79 99-194 241-323 (357)
46 PRK00861 putative lipid kinase 72.3 8.2 0.00018 33.5 5.3 43 36-80 47-90 (300)
47 PF13607 Succ_CoA_lig: Succiny 71.8 27 0.00059 27.3 7.6 67 111-190 55-136 (138)
48 PRK13337 putative lipid kinase 71.3 11 0.00023 33.0 5.8 44 36-80 47-92 (304)
49 PF00781 DAGK_cat: Diacylglyce 71.2 7.2 0.00016 29.5 4.1 44 36-80 43-91 (130)
50 TIGR00519 asnASE_I L-asparagin 70.3 11 0.00024 33.8 5.8 56 103-161 70-130 (336)
51 PRK13054 lipid kinase; Reviewe 69.7 12 0.00026 32.6 5.7 43 37-80 47-93 (300)
52 TIGR03702 lip_kinase_YegS lipi 69.4 12 0.00025 32.5 5.6 44 36-80 42-89 (293)
53 PRK13055 putative lipid kinase 68.9 12 0.00025 33.4 5.6 44 36-80 49-94 (334)
54 KOG4022 Dihydropteridine reduc 68.0 33 0.00071 28.5 7.4 70 44-121 2-83 (236)
55 cd01171 YXKO-related B.subtili 66.6 26 0.00056 29.5 7.0 41 107-151 74-114 (254)
56 COG1010 CobJ Precorrin-3B meth 66.4 78 0.0017 27.4 9.7 113 33-149 60-196 (249)
57 PRK09267 flavodoxin FldA; Vali 66.3 59 0.0013 25.5 8.7 100 14-164 1-107 (169)
58 cd00411 Asparaginase Asparagin 66.2 16 0.00035 32.5 5.9 36 109-147 77-112 (323)
59 cd06259 YdcF-like YdcF-like. Y 65.0 31 0.00067 26.4 6.7 11 112-122 1-11 (150)
60 PRK14046 malate--CoA ligase su 64.9 1.1E+02 0.0025 27.9 13.8 115 51-192 262-384 (392)
61 PRK11914 diacylglycerol kinase 63.4 16 0.00034 31.9 5.2 45 34-80 52-97 (306)
62 smart00046 DAGKc Diacylglycero 63.2 9.5 0.00021 28.9 3.4 34 114-147 52-85 (124)
63 cd03820 GT1_amsD_like This fam 63.2 36 0.00078 28.0 7.2 73 102-194 244-318 (348)
64 PRK02645 ppnK inorganic polyph 62.8 14 0.0003 32.8 4.7 107 13-167 2-117 (305)
65 COG1057 NadD Nicotinic acid mo 62.3 11 0.00025 31.3 3.9 41 13-53 1-42 (197)
66 KOG2968 Predicted esterase of 62.2 5.2 0.00011 40.7 2.1 46 36-83 829-885 (1158)
67 TIGR01501 MthylAspMutase methy 62.2 74 0.0016 24.9 12.6 41 35-76 18-58 (134)
68 cd03786 GT1_UDP-GlcNAc_2-Epime 62.2 1E+02 0.0023 26.6 14.8 69 102-195 269-337 (363)
69 cd03795 GT1_like_4 This family 61.2 39 0.00084 28.6 7.2 72 102-193 255-330 (357)
70 PHA03392 egt ecdysteroid UDP-g 60.8 1.3E+02 0.0027 28.6 11.1 141 7-167 257-408 (507)
71 PF00781 DAGK_cat: Diacylglyce 59.5 15 0.00033 27.7 3.9 40 107-147 48-89 (130)
72 PRK08105 flavodoxin; Provision 59.5 13 0.00028 29.2 3.6 34 14-50 1-34 (149)
73 PRK04183 glutamyl-tRNA(Gln) am 58.7 25 0.00055 32.7 5.9 48 111-161 153-205 (419)
74 PRK02155 ppnK NAD(+)/NADH kina 58.6 62 0.0014 28.4 8.1 62 11-76 2-93 (291)
75 PRK09004 FMN-binding protein M 58.5 12 0.00026 29.3 3.3 34 14-50 1-34 (146)
76 cd03808 GT1_cap1E_like This fa 58.1 38 0.00083 28.0 6.5 70 105-193 258-327 (359)
77 PRK14569 D-alanyl-alanine synt 57.9 26 0.00057 30.4 5.7 38 14-51 3-40 (296)
78 COG1063 Tdh Threonine dehydrog 57.7 75 0.0016 28.3 8.7 29 46-76 170-199 (350)
79 PF05159 Capsule_synth: Capsul 57.6 10 0.00022 32.4 2.9 38 105-154 194-231 (269)
80 TIGR03492 conserved hypothetic 57.0 1.5E+02 0.0033 26.9 12.2 36 105-151 291-326 (396)
81 TIGR00640 acid_CoA_mut_C methy 56.8 43 0.00093 25.9 6.1 46 30-76 14-59 (132)
82 cd07025 Peptidase_S66 LD-Carbo 56.5 88 0.0019 27.1 8.7 60 99-165 46-110 (282)
83 PRK09922 UDP-D-galactose:(gluc 56.2 56 0.0012 28.6 7.5 75 100-195 247-324 (359)
84 KOG2585 Uncharacterized conser 56.2 14 0.00029 34.7 3.6 41 4-49 256-296 (453)
85 PF13692 Glyco_trans_1_4: Glyc 56.1 22 0.00048 26.0 4.3 70 103-193 63-133 (135)
86 PF00861 Ribosomal_L18p: Ribos 55.2 45 0.00097 25.4 5.8 41 32-72 70-118 (119)
87 PRK09461 ansA cytoplasmic aspa 55.1 33 0.00072 30.7 5.9 52 108-161 79-135 (335)
88 PRK12361 hypothetical protein; 55.1 25 0.00053 33.5 5.3 44 35-80 286-330 (547)
89 PRK07313 phosphopantothenoylcy 54.7 44 0.00095 27.3 6.1 88 107-194 74-179 (182)
90 PF14359 DUF4406: Domain of un 54.4 34 0.00073 24.9 4.9 38 101-144 50-90 (92)
91 PLN02958 diacylglycerol kinase 54.1 28 0.00062 32.8 5.5 45 35-80 157-208 (481)
92 TIGR02153 gatD_arch glutamyl-t 54.0 33 0.00071 31.8 5.8 49 111-161 140-193 (404)
93 TIGR00060 L18_bact ribosomal p 53.7 42 0.00092 25.6 5.4 40 32-71 65-112 (114)
94 PRK09880 L-idonate 5-dehydroge 53.6 1.4E+02 0.0031 25.9 9.7 30 46-77 171-201 (343)
95 PRK06029 3-octaprenyl-4-hydrox 53.4 23 0.0005 29.1 4.3 81 110-191 78-168 (185)
96 COG3573 Predicted oxidoreducta 52.8 35 0.00076 31.5 5.6 84 47-138 141-245 (552)
97 PF01820 Dala_Dala_lig_N: D-al 52.8 16 0.00035 27.5 3.0 36 15-50 1-36 (117)
98 PF00534 Glycos_transf_1: Glyc 52.7 56 0.0012 24.9 6.3 72 101-193 83-156 (172)
99 COG0549 ArcC Carbamate kinase 52.6 27 0.00058 31.1 4.7 28 93-120 208-235 (312)
100 PF02608 Bmp: Basic membrane p 51.8 65 0.0014 28.1 7.1 59 13-77 160-220 (306)
101 COG0063 Predicted sugar kinase 51.6 1.7E+02 0.0037 25.8 13.1 132 44-190 31-168 (284)
102 TIGR02717 AcCoA-syn-alpha acet 51.5 2.1E+02 0.0044 26.7 13.1 141 38-193 283-444 (447)
103 PRK13057 putative lipid kinase 51.4 33 0.00072 29.5 5.2 44 35-80 40-83 (287)
104 cd03794 GT1_wbuB_like This fam 51.0 61 0.0013 27.1 6.7 72 103-193 287-363 (394)
105 COG1064 AdhP Zn-dependent alco 51.0 52 0.0011 29.8 6.5 139 46-191 168-326 (339)
106 TIGR02113 coaC_strep phosphopa 50.7 25 0.00053 28.7 4.0 83 109-192 75-176 (177)
107 cd03825 GT1_wcfI_like This fam 50.4 74 0.0016 27.0 7.2 70 103-193 257-328 (365)
108 cd03804 GT1_wbaZ_like This fam 50.3 54 0.0012 28.2 6.4 72 102-194 253-325 (351)
109 PRK09355 hydroxyethylthiazole 50.0 74 0.0016 27.2 7.1 41 107-151 51-94 (263)
110 cd03822 GT1_ecORF704_like This 50.0 49 0.0011 27.8 6.0 70 102-194 259-333 (366)
111 PRK13937 phosphoheptose isomer 49.5 58 0.0013 26.4 6.1 32 28-59 21-52 (188)
112 PRK03378 ppnK inorganic polyph 49.4 1.1E+02 0.0024 27.0 8.2 62 11-76 2-93 (292)
113 cd06353 PBP1_BmpA_Med_like Per 49.2 1.2E+02 0.0025 25.8 8.2 41 33-76 166-206 (258)
114 PRK12359 flavodoxin FldB; Prov 49.1 59 0.0013 26.4 6.0 37 14-50 79-116 (172)
115 TIGR00421 ubiX_pad polyprenyl 49.0 37 0.00081 27.7 4.8 80 110-191 75-165 (181)
116 PRK04539 ppnK inorganic polyph 49.0 1.1E+02 0.0023 27.1 8.1 61 12-76 3-98 (296)
117 KOG4175 Tryptophan synthase al 48.8 70 0.0015 27.3 6.4 33 123-158 78-110 (268)
118 COG4671 Predicted glycosyl tra 48.4 1.2E+02 0.0026 28.0 8.3 80 99-193 283-363 (400)
119 cd03801 GT1_YqgM_like This fam 48.3 47 0.001 27.3 5.5 69 104-193 269-339 (374)
120 smart00870 Asparaginase Aspara 48.2 30 0.00064 30.8 4.4 36 110-147 77-112 (323)
121 PRK03600 nrdI ribonucleotide r 48.2 30 0.00065 26.9 4.0 39 4-42 63-101 (134)
122 COG0703 AroK Shikimate kinase 48.0 58 0.0013 26.6 5.7 33 111-149 72-104 (172)
123 PF09152 DUF1937: Domain of un 48.0 17 0.00037 27.9 2.5 39 102-146 71-114 (116)
124 TIGR01753 flav_short flavodoxi 47.8 66 0.0014 23.9 5.8 6 69-74 109-114 (140)
125 PTZ00032 60S ribosomal protein 47.8 45 0.00097 28.2 5.1 40 32-71 162-209 (211)
126 cd00587 HCP_like The HCP famil 47.7 41 0.00088 29.4 5.1 154 10-189 90-257 (258)
127 cd03799 GT1_amsK_like This is 47.4 65 0.0014 27.2 6.4 73 102-193 247-325 (355)
128 PF12641 Flavodoxin_3: Flavodo 47.2 54 0.0012 26.2 5.4 62 4-68 59-121 (160)
129 COG0252 AnsB L-asparaginase/ar 47.2 52 0.0011 29.9 5.9 33 112-147 102-134 (351)
130 cd02072 Glm_B12_BD B12 binding 47.0 1.3E+02 0.0029 23.2 9.9 40 36-76 17-56 (128)
131 COG0716 FldA Flavodoxins [Ener 46.8 30 0.00064 26.9 3.8 34 14-50 1-34 (151)
132 PF01320 Colicin_Pyocin: Colic 46.6 16 0.00034 26.6 2.0 52 146-201 27-83 (85)
133 PRK05723 flavodoxin; Provision 46.6 24 0.00052 27.9 3.2 33 15-50 1-33 (151)
134 cd07062 Peptidase_S66_mccF_lik 46.5 2E+02 0.0044 25.2 10.8 52 111-169 67-119 (308)
135 PRK13057 putative lipid kinase 46.4 45 0.00097 28.7 5.2 32 110-147 50-81 (287)
136 TIGR01016 sucCoAbeta succinyl- 46.1 2.3E+02 0.0049 25.6 12.9 70 111-191 311-383 (386)
137 PLN02565 cysteine synthase 46.1 2.1E+02 0.0046 25.3 10.5 32 48-79 175-208 (322)
138 KOG2467 Glycine/serine hydroxy 45.9 34 0.00073 31.8 4.4 36 34-69 329-374 (477)
139 PF04016 DUF364: Domain of unk 45.7 31 0.00068 27.1 3.8 76 101-191 53-130 (147)
140 PRK13059 putative lipid kinase 45.5 51 0.0011 28.6 5.4 40 40-80 50-91 (295)
141 PRK05333 NAD-dependent deacety 45.5 54 0.0012 28.6 5.6 76 101-198 205-282 (285)
142 COG2081 Predicted flavoprotein 45.1 18 0.0004 33.5 2.6 27 48-76 6-32 (408)
143 PRK14572 D-alanyl-alanine synt 44.8 43 0.00092 29.8 5.0 40 14-53 1-40 (347)
144 PF00710 Asparaginase: Asparag 44.7 57 0.0012 28.8 5.7 38 108-147 70-107 (313)
145 TIGR00147 lipid kinase, YegS/R 44.7 60 0.0013 27.9 5.7 38 42-80 53-92 (293)
146 COG0256 RplR Ribosomal protein 44.5 72 0.0016 24.8 5.5 40 32-71 76-123 (125)
147 cd04949 GT1_gtfA_like This fam 44.5 59 0.0013 28.2 5.8 68 107-194 275-344 (372)
148 PRK01231 ppnK inorganic polyph 44.4 1.3E+02 0.0028 26.5 7.9 61 12-76 2-92 (295)
149 PRK10494 hypothetical protein; 44.2 92 0.002 26.9 6.8 12 110-121 78-89 (259)
150 cd04951 GT1_WbdM_like This fam 44.0 53 0.0011 27.8 5.3 68 105-193 257-324 (360)
151 PLN02275 transferase, transfer 44.0 1.4E+02 0.0031 26.3 8.3 70 102-192 298-370 (371)
152 cd05844 GT1_like_7 Glycosyltra 43.8 76 0.0017 27.1 6.3 69 104-194 258-335 (367)
153 PF03492 Methyltransf_7: SAM d 43.8 23 0.00051 31.7 3.1 43 150-192 198-243 (334)
154 COG0175 CysH 3'-phosphoadenosi 43.6 1.7E+02 0.0037 25.1 8.4 90 101-200 28-123 (261)
155 PRK06756 flavodoxin; Provision 43.5 40 0.00087 25.9 4.1 32 14-48 1-32 (148)
156 cd03819 GT1_WavL_like This fam 43.5 91 0.002 26.4 6.7 68 104-192 257-327 (355)
157 PRK06703 flavodoxin; Provision 43.1 84 0.0018 24.1 5.9 13 63-75 106-118 (151)
158 PF09314 DUF1972: Domain of un 42.3 48 0.001 27.3 4.5 40 14-53 1-42 (185)
159 PF10087 DUF2325: Uncharacteri 42.0 88 0.0019 22.4 5.5 91 49-161 3-95 (97)
160 PLN02586 probable cinnamyl alc 41.9 2.5E+02 0.0053 24.8 10.6 83 46-131 185-268 (360)
161 cd04180 UGPase_euk_like Eukary 41.9 1E+02 0.0022 26.7 6.7 69 113-193 2-76 (266)
162 TIGR03449 mycothiol_MshA UDP-N 41.8 1.1E+02 0.0023 27.0 7.1 72 102-194 294-367 (405)
163 PF13380 CoA_binding_2: CoA bi 41.6 52 0.0011 24.6 4.3 31 15-50 1-31 (116)
164 PRK03708 ppnK inorganic polyph 41.6 63 0.0014 28.2 5.4 34 15-51 1-34 (277)
165 PRK11096 ansB L-asparaginase I 41.3 43 0.00094 30.3 4.4 36 109-147 99-134 (347)
166 cd07225 Pat_PNPLA6_PNPLA7 Pata 41.3 28 0.00062 30.8 3.2 31 36-68 5-35 (306)
167 COG2984 ABC-type uncharacteriz 41.2 1.6E+02 0.0034 26.6 7.8 69 5-76 150-218 (322)
168 cd03816 GT1_ALG1_like This fam 41.1 1.5E+02 0.0033 26.7 8.1 73 102-195 306-381 (415)
169 cd01408 SIRT1 SIRT1: Eukaryoti 41.0 87 0.0019 26.5 6.1 70 101-189 166-235 (235)
170 cd07227 Pat_Fungal_NTE1 Fungal 40.5 22 0.00048 30.9 2.4 30 37-68 1-30 (269)
171 PF00106 adh_short: short chai 40.3 38 0.00082 25.7 3.5 30 47-77 2-31 (167)
172 TIGR01182 eda Entner-Doudoroff 40.0 1.4E+02 0.003 25.0 7.0 108 13-132 7-119 (204)
173 COG0150 PurM Phosphoribosylami 39.9 1.9E+02 0.0042 26.3 8.2 95 33-130 114-223 (345)
174 COG3967 DltE Short-chain dehyd 39.7 38 0.00082 29.1 3.5 27 48-75 8-34 (245)
175 PRK03372 ppnK inorganic polyph 39.6 1.9E+02 0.004 25.7 8.1 33 12-47 3-35 (306)
176 PRK06443 chorismate mutase; Va 39.5 95 0.0021 25.6 5.7 42 30-75 91-132 (177)
177 PRK02645 ppnK inorganic polyph 38.9 1.7E+02 0.0038 25.8 7.8 28 48-76 60-87 (305)
178 COG0394 Wzb Protein-tyrosine-p 38.6 1E+02 0.0022 24.0 5.7 36 14-53 2-37 (139)
179 PRK14568 vanB D-alanine--D-lac 38.5 53 0.0011 29.1 4.5 36 15-50 4-39 (343)
180 TIGR01007 eps_fam capsular exo 38.5 95 0.0021 25.0 5.7 39 9-50 12-50 (204)
181 cd03818 GT1_ExpC_like This fam 38.2 1.2E+02 0.0025 26.9 6.7 70 103-193 293-364 (396)
182 PF12965 DUF3854: Domain of un 38.2 1.9E+02 0.004 22.3 7.3 49 15-64 69-124 (130)
183 PRK01966 ddl D-alanyl-alanine 37.8 58 0.0013 28.8 4.7 36 15-50 4-39 (333)
184 cd03807 GT1_WbnK_like This fam 37.8 90 0.0019 25.8 5.7 68 106-194 264-331 (365)
185 PRK14571 D-alanyl-alanine synt 37.6 69 0.0015 27.6 5.0 35 16-50 2-36 (299)
186 CHL00200 trpA tryptophan synth 37.5 1.7E+02 0.0036 25.4 7.4 40 123-166 75-119 (263)
187 PRK13337 putative lipid kinase 37.5 1.9E+02 0.0041 25.1 7.8 30 114-146 60-89 (304)
188 cd03814 GT1_like_2 This family 37.3 85 0.0018 26.2 5.5 70 104-194 260-331 (364)
189 COG0300 DltE Short-chain dehyd 37.2 1.5E+02 0.0032 25.9 7.0 57 15-79 7-63 (265)
190 PLN02271 serine hydroxymethylt 37.2 73 0.0016 31.1 5.5 42 33-74 442-493 (586)
191 TIGR03702 lip_kinase_YegS lipi 37.2 95 0.0021 26.8 5.9 32 114-147 55-87 (293)
192 PRK15484 lipopolysaccharide 1, 37.2 1.2E+02 0.0025 27.1 6.6 72 102-194 268-343 (380)
193 PRK13059 putative lipid kinase 37.1 1.5E+02 0.0033 25.6 7.1 33 111-147 57-89 (295)
194 cd03798 GT1_wlbH_like This fam 36.8 1.1E+02 0.0025 25.1 6.1 72 103-195 271-344 (377)
195 PRK14138 NAD-dependent deacety 36.7 84 0.0018 26.8 5.3 71 101-193 169-241 (244)
196 PRK06973 nicotinic acid mononu 36.7 56 0.0012 28.0 4.2 33 13-45 20-52 (243)
197 PRK06703 flavodoxin; Provision 36.7 48 0.001 25.5 3.5 33 14-49 1-33 (151)
198 PRK08862 short chain dehydroge 36.6 2.1E+02 0.0044 23.5 7.6 53 15-75 6-58 (227)
199 KOG3349 Predicted glycosyltran 36.3 93 0.002 25.3 5.1 50 109-168 79-129 (170)
200 PF01182 Glucosamine_iso: Gluc 36.2 1.4E+02 0.003 24.4 6.4 82 107-192 17-110 (199)
201 PF04007 DUF354: Protein of un 36.2 1.4E+02 0.003 26.9 6.8 63 107-192 245-307 (335)
202 TIGR00333 nrdI ribonucleoside- 36.2 67 0.0014 24.8 4.2 39 4-44 55-93 (125)
203 PRK08887 nicotinic acid mononu 36.1 46 0.001 26.8 3.5 24 14-37 1-24 (174)
204 PRK15427 colanic acid biosynth 36.1 1.5E+02 0.0033 26.8 7.2 71 105-194 293-369 (406)
205 COG0363 NagB 6-phosphogluconol 36.1 2.2E+02 0.0047 24.3 7.8 43 111-154 32-75 (238)
206 cd08324 CARD_NOD1_CARD4 Caspas 36.0 9.6 0.00021 27.6 -0.5 47 157-203 19-65 (85)
207 cd03812 GT1_CapH_like This fam 35.9 1E+02 0.0022 26.1 5.8 71 104-194 260-330 (358)
208 COG2085 Predicted dinucleotide 35.9 86 0.0019 26.6 5.1 48 14-72 1-48 (211)
209 PRK09271 flavodoxin; Provision 35.7 50 0.0011 25.9 3.6 31 16-49 2-32 (160)
210 PF12831 FAD_oxidored: FAD dep 35.6 39 0.00085 31.0 3.3 29 48-78 2-30 (428)
211 cd03823 GT1_ExpE7_like This fa 35.5 1.4E+02 0.003 24.8 6.5 72 102-194 254-328 (359)
212 PRK02649 ppnK inorganic polyph 35.3 2.1E+02 0.0046 25.3 7.8 33 14-49 1-33 (305)
213 PRK04885 ppnK inorganic polyph 35.2 2.2E+02 0.0048 24.7 7.8 57 15-76 1-67 (265)
214 COG0604 Qor NADPH:quinone redu 35.1 3.2E+02 0.0069 24.1 10.1 33 45-78 143-175 (326)
215 PRK01372 ddl D-alanine--D-alan 35.1 73 0.0016 27.3 4.8 37 15-51 5-41 (304)
216 COG0794 GutQ Predicted sugar p 35.1 2.7E+02 0.0059 23.4 10.5 89 37-147 30-120 (202)
217 PF09587 PGA_cap: Bacterial ca 35.0 81 0.0018 26.6 5.0 23 33-55 203-225 (250)
218 TIGR03201 dearomat_had 6-hydro 34.9 3.1E+02 0.0066 23.9 8.9 30 46-77 168-197 (349)
219 PRK09536 btuD corrinoid ABC tr 34.7 86 0.0019 28.9 5.4 73 57-129 277-357 (402)
220 cd03800 GT1_Sucrose_synthase T 34.6 1E+02 0.0022 26.6 5.6 70 104-194 296-367 (398)
221 cd00432 Ribosomal_L18_L5e Ribo 34.4 82 0.0018 23.0 4.3 38 33-70 57-102 (103)
222 COG0703 AroK Shikimate kinase 34.2 1.1E+02 0.0025 24.9 5.4 82 38-121 65-155 (172)
223 smart00854 PGA_cap Bacterial c 34.1 86 0.0019 26.2 5.0 20 36-55 195-214 (239)
224 PF04230 PS_pyruv_trans: Polys 34.1 58 0.0013 26.2 3.8 41 109-149 62-108 (286)
225 KOG1718 Dual specificity phosp 34.1 39 0.00085 28.0 2.7 53 109-162 93-155 (198)
226 KOG1201 Hydroxysteroid 17-beta 34.0 50 0.0011 29.5 3.5 27 45-72 38-64 (300)
227 PF06506 PrpR_N: Propionate ca 34.0 2.4E+02 0.0052 22.4 7.7 66 5-76 68-149 (176)
228 cd03821 GT1_Bme6_like This fam 34.0 1.8E+02 0.0039 24.1 6.9 69 103-194 274-344 (375)
229 PRK02649 ppnK inorganic polyph 33.6 90 0.0019 27.7 5.1 53 109-167 67-126 (305)
230 CHL00162 thiG thiamin biosynth 33.4 1.5E+02 0.0033 25.9 6.3 32 103-134 180-211 (267)
231 TIGR01752 flav_long flavodoxin 33.3 1.3E+02 0.0028 23.8 5.6 20 31-50 96-115 (167)
232 PF13614 AAA_31: AAA domain; P 33.0 1E+02 0.0022 23.3 4.8 32 15-49 1-32 (157)
233 TIGR01205 D_ala_D_alaTIGR D-al 33.0 60 0.0013 28.0 3.9 39 16-54 1-39 (315)
234 PF01113 DapB_N: Dihydrodipico 33.0 2.1E+02 0.0045 21.4 7.1 51 107-164 64-114 (124)
235 PLN02871 UDP-sulfoquinovose:DA 33.0 1.6E+02 0.0035 27.0 6.9 75 102-194 323-399 (465)
236 PRK13054 lipid kinase; Reviewe 32.9 1.2E+02 0.0026 26.2 5.8 34 111-146 57-90 (300)
237 cd05007 SIS_Etherase N-acetylm 32.9 1.5E+02 0.0033 25.4 6.4 33 29-61 33-65 (257)
238 TIGR00936 ahcY adenosylhomocys 32.8 1.4E+02 0.0029 27.8 6.3 86 47-150 197-283 (406)
239 cd02201 FtsZ_type1 FtsZ is a G 32.7 3E+02 0.0064 24.1 8.3 73 38-118 78-154 (304)
240 TIGR00236 wecB UDP-N-acetylglu 32.5 1.7E+02 0.0037 25.6 6.8 65 103-193 267-332 (365)
241 TIGR01198 pgl 6-phosphoglucono 32.4 3E+02 0.0065 23.0 8.1 41 109-152 26-66 (233)
242 cd03805 GT1_ALG2_like This fam 32.2 1.8E+02 0.004 25.2 6.9 67 105-193 294-362 (392)
243 PF09353 DUF1995: Domain of un 32.1 2.9E+02 0.0062 22.7 8.8 39 111-155 98-136 (209)
244 KOG2683 Sirtuin 4 and related 32.1 75 0.0016 27.8 4.2 41 105-149 241-282 (305)
245 PRK00414 gmhA phosphoheptose i 31.9 2.1E+02 0.0046 23.2 6.8 30 29-58 28-57 (192)
246 PRK09426 methylmalonyl-CoA mut 31.5 2E+02 0.0044 28.7 7.6 46 30-76 594-639 (714)
247 PRK05476 S-adenosyl-L-homocyst 31.3 1.4E+02 0.003 27.9 6.1 86 48-151 215-301 (425)
248 TIGR02699 archaeo_AfpA archaeo 31.1 1.3E+02 0.0029 24.5 5.4 38 110-147 78-122 (174)
249 TIGR01019 sucCoAalpha succinyl 31.0 3.4E+02 0.0073 23.9 8.3 17 176-192 269-285 (286)
250 PLN02494 adenosylhomocysteinas 31.0 1.9E+02 0.0042 27.5 7.1 91 47-156 256-347 (477)
251 CHL00139 rpl18 ribosomal prote 30.9 1.4E+02 0.003 22.5 5.1 39 33-71 61-107 (109)
252 PLN02591 tryptophan synthase 30.9 2.7E+02 0.0059 23.9 7.5 40 123-166 62-106 (250)
253 PLN02522 ATP citrate (pro-S)-l 30.9 5.3E+02 0.011 25.4 12.9 88 98-192 208-313 (608)
254 PRK06756 flavodoxin; Provision 30.8 1.5E+02 0.0032 22.6 5.5 13 63-75 107-119 (148)
255 PRK05568 flavodoxin; Provision 30.6 84 0.0018 23.7 4.0 30 15-47 2-31 (142)
256 PF00290 Trp_syntA: Tryptophan 30.6 90 0.0019 27.1 4.5 40 123-165 70-110 (259)
257 COG1597 LCB5 Sphingosine kinas 30.5 87 0.0019 27.5 4.5 31 111-146 58-89 (301)
258 PRK15494 era GTPase Era; Provi 30.5 3.4E+02 0.0074 24.1 8.4 86 108-197 129-219 (339)
259 TIGR02467 CbiE precorrin-6y C5 30.3 2.9E+02 0.0064 22.3 8.8 112 33-147 55-174 (204)
260 PRK14076 pnk inorganic polypho 30.3 3E+02 0.0065 26.5 8.5 65 8-76 284-378 (569)
261 COG0593 DnaA ATPase involved i 30.1 2.7E+02 0.0058 25.9 7.8 103 33-145 96-213 (408)
262 COG2515 Acd 1-aminocyclopropan 30.1 1.5E+02 0.0033 26.6 5.9 42 109-153 179-220 (323)
263 COG0163 UbiX 3-polyprenyl-4-hy 30.1 1.1E+02 0.0023 25.6 4.6 81 110-191 80-170 (191)
264 PF07293 DUF1450: Protein of u 30.1 66 0.0014 22.9 3.0 18 176-193 55-72 (78)
265 PRK10834 vancomycin high tempe 30.0 1.6E+02 0.0035 25.3 5.9 55 110-166 44-110 (239)
266 PRK00861 putative lipid kinase 29.8 1.2E+02 0.0025 26.3 5.2 30 111-146 58-87 (300)
267 PTZ00187 succinyl-CoA syntheta 29.8 4.1E+02 0.0089 23.8 13.4 84 98-193 210-313 (317)
268 PF03853 YjeF_N: YjeF-related 29.8 55 0.0012 26.1 2.9 34 12-50 23-56 (169)
269 PLN02668 indole-3-acetate carb 29.7 53 0.0012 30.3 3.1 40 152-191 255-298 (386)
270 PRK03708 ppnK inorganic polyph 29.5 2.7E+02 0.0059 24.2 7.4 28 46-76 59-86 (277)
271 PRK14077 pnk inorganic polypho 29.5 1.3E+02 0.0027 26.5 5.4 106 14-167 10-122 (287)
272 cd03811 GT1_WabH_like This fam 29.5 1.7E+02 0.0038 23.8 6.0 66 107-193 260-330 (353)
273 PRK14075 pnk inorganic polypho 29.4 2.2E+02 0.0047 24.5 6.7 53 15-77 1-69 (256)
274 PF03358 FMN_red: NADPH-depend 29.4 1.2E+02 0.0025 23.0 4.6 47 103-149 63-115 (152)
275 smart00046 DAGKc Diacylglycero 29.3 1.2E+02 0.0026 22.7 4.6 32 48-80 52-87 (124)
276 cd01412 SIRT5_Af1_CobB SIRT5_A 29.2 2.3E+02 0.005 23.4 6.7 67 102-189 156-223 (224)
277 TIGR01127 ilvA_1Cterm threonin 29.0 3.4E+02 0.0073 24.3 8.2 23 112-134 307-329 (380)
278 COG0493 GltD NADPH-dependent g 28.7 2.2E+02 0.0048 26.8 7.1 50 15-85 124-174 (457)
279 KOG0832 Mitochondrial/chloropl 28.5 1.9E+02 0.0041 25.1 6.0 60 12-75 77-137 (251)
280 KOG3974 Predicted sugar kinase 28.3 4.3E+02 0.0092 23.5 8.7 49 102-153 93-144 (306)
281 TIGR02690 resist_ArsH arsenica 28.3 1.4E+02 0.0029 25.3 5.1 46 102-150 82-138 (219)
282 COG0112 GlyA Glycine/serine hy 28.0 59 0.0013 30.2 3.0 41 33-73 291-341 (413)
283 cd07381 MPP_CapA CapA and rela 28.0 1.2E+02 0.0026 25.2 4.8 22 34-55 195-216 (239)
284 PRK05593 rplR 50S ribosomal pr 28.0 99 0.0021 23.6 3.9 39 33-71 69-115 (117)
285 PF04127 DFP: DNA / pantothena 27.8 3.1E+02 0.0068 22.3 7.1 65 48-117 21-89 (185)
286 PF14947 HTH_45: Winged helix- 27.8 61 0.0013 22.4 2.5 40 152-192 33-72 (77)
287 PRK11780 isoprenoid biosynthes 27.8 69 0.0015 26.9 3.3 39 14-53 1-40 (217)
288 COG2242 CobL Precorrin-6B meth 27.3 1.6E+02 0.0034 24.5 5.2 123 34-168 23-154 (187)
289 PF04028 DUF374: Domain of unk 27.2 2.2E+02 0.0048 19.8 6.6 61 12-80 7-68 (74)
290 PRK09496 trkA potassium transp 27.2 1.6E+02 0.0035 26.7 5.8 88 31-121 217-308 (453)
291 TIGR01754 flav_RNR ribonucleot 27.1 84 0.0018 23.9 3.5 52 110-163 50-110 (140)
292 PRK14077 pnk inorganic polypho 27.1 2.6E+02 0.0056 24.5 6.9 30 45-76 65-94 (287)
293 cd04962 GT1_like_5 This family 27.1 1.7E+02 0.0037 24.9 5.8 68 105-193 265-334 (371)
294 COG0159 TrpA Tryptophan syntha 27.0 2.8E+02 0.0062 24.3 7.0 59 123-190 77-140 (265)
295 PF03060 NMO: Nitronate monoox 27.0 4.2E+02 0.009 23.4 8.3 124 7-133 57-211 (330)
296 PF13407 Peripla_BP_4: Peripla 26.9 1.2E+02 0.0027 24.6 4.7 39 106-149 51-89 (257)
297 TIGR00197 yjeF_nterm yjeF N-te 26.9 2E+02 0.0043 23.7 5.8 11 138-148 144-154 (205)
298 cd04261 AAK_AKii-LysC-BS AAK_A 26.6 1.7E+02 0.0037 24.4 5.5 40 20-61 6-47 (239)
299 PRK00481 NAD-dependent deacety 26.6 1.8E+02 0.0039 24.5 5.7 69 102-191 169-238 (242)
300 PRK00208 thiG thiazole synthas 26.5 4.3E+02 0.0094 23.0 12.3 101 15-132 94-195 (250)
301 PRK05678 succinyl-CoA syntheta 26.4 4.4E+02 0.0096 23.2 8.3 18 176-193 271-288 (291)
302 KOG0503 Asparaginase [Amino ac 26.4 1E+02 0.0023 28.2 4.3 36 109-147 120-155 (368)
303 COG0205 PfkA 6-phosphofructoki 26.2 2.8E+02 0.006 25.2 7.0 55 18-76 67-124 (347)
304 PRK08105 flavodoxin; Provision 26.2 2.2E+02 0.0049 22.1 5.8 18 58-75 103-120 (149)
305 PF11834 DUF3354: Domain of un 26.0 1.5E+02 0.0033 20.5 4.2 33 112-150 19-51 (69)
306 PRK02261 methylaspartate mutas 26.0 3.1E+02 0.0067 21.1 13.1 40 36-76 21-60 (137)
307 PLN02740 Alcohol dehydrogenase 25.8 1.8E+02 0.0039 25.8 5.8 83 46-131 200-289 (381)
308 PRK13146 hisH imidazole glycer 25.8 1.8E+02 0.0039 24.0 5.4 15 62-76 69-83 (209)
309 cd04260 AAK_AKi-DapG-BS AAK_AK 25.8 84 0.0018 26.5 3.5 25 20-44 6-30 (244)
310 PRK09330 cell division protein 25.7 3.6E+02 0.0079 24.8 7.8 73 38-118 91-167 (384)
311 cd01411 SIR2H SIR2H: Uncharact 25.6 88 0.0019 26.3 3.5 45 101-149 162-206 (225)
312 cd06320 PBP1_allose_binding Pe 25.6 1.2E+02 0.0025 25.0 4.3 34 16-51 1-34 (275)
313 PRK13111 trpA tryptophan synth 25.6 1.8E+02 0.004 25.0 5.6 42 123-167 72-118 (258)
314 cd03802 GT1_AviGT4_like This f 25.5 3E+02 0.0064 23.0 6.9 66 105-193 238-306 (335)
315 PRK15454 ethanol dehydrogenase 25.5 1.9E+02 0.0041 26.4 6.0 13 109-121 105-117 (395)
316 PRK07308 flavodoxin; Validated 25.5 95 0.0021 23.7 3.5 40 109-148 47-90 (146)
317 PRK13669 hypothetical protein; 25.5 90 0.002 22.3 3.0 19 176-194 55-73 (78)
318 KOG1207 Diacetyl reductase/L-x 25.3 90 0.002 26.2 3.4 30 47-77 9-38 (245)
319 PRK07102 short chain dehydroge 25.2 1.1E+02 0.0023 25.0 3.9 15 179-193 196-210 (243)
320 PRK06696 uridine kinase; Valid 25.0 1.6E+02 0.0036 24.2 5.1 43 7-53 15-57 (223)
321 PRK07677 short chain dehydroge 25.0 1.2E+02 0.0026 24.9 4.2 30 16-53 3-32 (252)
322 PRK09250 fructose-bisphosphate 24.9 5.4E+02 0.012 23.5 10.9 113 17-131 165-301 (348)
323 PLN02945 nicotinamide-nucleoti 24.9 1.8E+02 0.004 24.5 5.4 39 12-50 19-57 (236)
324 PF00289 CPSase_L_chain: Carba 24.8 2.8E+02 0.006 20.6 5.8 78 62-166 17-99 (110)
325 TIGR01832 kduD 2-deoxy-D-gluco 24.8 1.1E+02 0.0024 24.8 4.0 31 15-53 6-36 (248)
326 PF10727 Rossmann-like: Rossma 24.7 1E+02 0.0023 23.6 3.5 30 12-50 8-37 (127)
327 cd00458 SugarP_isomerase Sugar 24.7 3.5E+02 0.0076 21.3 8.5 44 109-153 18-61 (169)
328 cd03132 GATase1_catalase Type 24.6 2.3E+02 0.005 21.2 5.5 62 112-185 64-129 (142)
329 PRK07035 short chain dehydroge 24.6 1.1E+02 0.0024 25.0 3.9 32 15-54 9-40 (252)
330 cd06300 PBP1_ABC_sugar_binding 24.5 1.5E+02 0.0032 24.3 4.7 30 16-47 1-33 (272)
331 PF01965 DJ-1_PfpI: DJ-1/PfpI 24.4 59 0.0013 24.9 2.1 35 114-148 40-79 (147)
332 cd06313 PBP1_ABC_sugar_binding 24.4 1.2E+02 0.0026 25.1 4.2 38 106-148 51-88 (272)
333 PRK06015 keto-hydroxyglutarate 24.3 2.5E+02 0.0054 23.4 5.9 107 14-132 4-115 (201)
334 cd01356 AcnX_swivel Putative A 24.2 1.4E+02 0.0031 23.0 4.1 36 110-145 42-77 (123)
335 PRK07109 short chain dehydroge 24.1 3.1E+02 0.0067 24.0 6.9 55 15-77 9-63 (334)
336 TIGR02822 adh_fam_2 zinc-bindi 24.1 93 0.002 27.1 3.6 31 46-78 167-197 (329)
337 TIGR00642 mmCoA_mut_beta methy 24.1 1.6E+02 0.0035 28.9 5.4 45 13-61 545-589 (619)
338 cd04193 UDPGlcNAc_PPase UDPGlc 24.0 5E+02 0.011 23.1 8.2 78 103-191 6-93 (323)
339 PRK05854 short chain dehydroge 24.0 1.2E+02 0.0025 26.3 4.2 20 36-55 28-47 (313)
340 PRK13609 diacylglycerol glucos 23.9 1.5E+02 0.0032 26.1 4.8 34 12-48 2-35 (380)
341 COG2145 ThiM Hydroxyethylthiaz 23.9 83 0.0018 27.6 3.1 62 102-166 47-112 (265)
342 PRK06180 short chain dehydroge 23.8 1.2E+02 0.0026 25.4 4.1 34 14-55 4-37 (277)
343 PRK01231 ppnK inorganic polyph 23.8 1.6E+02 0.0035 25.9 5.0 51 110-166 62-119 (295)
344 cd01400 6PGL 6PGL: 6-Phosphogl 23.8 3.7E+02 0.008 22.2 7.0 44 107-152 19-62 (219)
345 PF03486 HI0933_like: HI0933-l 23.8 57 0.0012 30.1 2.2 25 48-74 3-27 (409)
346 PF01202 SKI: Shikimate kinase 23.7 1.4E+02 0.003 23.1 4.2 37 38-76 55-91 (158)
347 cd03817 GT1_UGDG_like This fam 23.7 2.8E+02 0.006 23.0 6.3 40 102-149 270-311 (374)
348 cd05009 SIS_GlmS_GlmD_2 SIS (S 23.7 3.1E+02 0.0068 20.4 7.4 91 35-148 3-97 (153)
349 PRK06242 flavodoxin; Provision 23.7 2.6E+02 0.0056 21.1 5.6 18 59-76 91-108 (150)
350 PRK06382 threonine dehydratase 23.6 4E+02 0.0087 24.3 7.8 44 36-80 165-210 (406)
351 PRK14106 murD UDP-N-acetylmura 23.6 2.6E+02 0.0056 25.4 6.5 29 48-78 8-36 (450)
352 PRK06182 short chain dehydroge 23.6 4.2E+02 0.0092 21.9 7.9 29 47-76 5-33 (273)
353 PRK05866 short chain dehydroge 23.5 3.5E+02 0.0076 23.0 7.0 54 15-76 41-94 (293)
354 PRK12361 hypothetical protein; 23.4 1.3E+02 0.0027 28.7 4.5 28 114-146 300-327 (547)
355 PRK04155 chaperone protein Hch 23.2 79 0.0017 27.8 2.9 35 113-147 149-187 (287)
356 PF12146 Hydrolase_4: Putative 23.2 1.3E+02 0.0028 20.9 3.5 18 34-51 31-48 (79)
357 PF00258 Flavodoxin_1: Flavodo 23.1 83 0.0018 23.6 2.7 38 13-51 86-123 (143)
358 PRK14573 bifunctional D-alanyl 23.1 1.7E+02 0.0037 29.3 5.5 38 13-50 450-487 (809)
359 PLN03050 pyridoxine (pyridoxam 23.1 1.4E+02 0.003 25.6 4.4 30 15-49 61-90 (246)
360 cd02191 FtsZ FtsZ is a GTPase 23.1 5.2E+02 0.011 22.7 8.9 85 26-118 61-154 (303)
361 PF07287 DUF1446: Protein of u 23.0 2.2E+02 0.0048 26.0 5.8 53 25-77 50-106 (362)
362 PLN02496 probable phosphopanto 23.0 87 0.0019 26.4 3.0 88 107-195 93-199 (209)
363 PRK07308 flavodoxin; Validated 23.0 2.3E+02 0.0049 21.5 5.2 28 48-75 85-118 (146)
364 TIGR02149 glgA_Coryne glycogen 23.0 1.8E+02 0.0038 25.3 5.1 39 104-150 274-314 (388)
365 cd00401 AdoHcyase S-adenosyl-L 22.8 2.9E+02 0.0063 25.7 6.6 69 47-126 204-273 (413)
366 PF06819 Arc_PepC: Archaeal Pe 22.8 3.5E+02 0.0075 20.6 5.9 53 97-171 55-107 (110)
367 TIGR00253 RNA_bind_YhbY putati 22.8 2.3E+02 0.0051 20.7 4.9 53 138-192 14-67 (95)
368 PF13580 SIS_2: SIS domain; PD 22.8 2.8E+02 0.0061 21.0 5.7 93 29-125 19-118 (138)
369 cd06424 UGGPase UGGPase cataly 22.7 1.6E+02 0.0034 26.5 4.7 66 113-192 2-77 (315)
370 TIGR00262 trpA tryptophan synt 22.2 4.6E+02 0.01 22.4 7.5 41 123-166 70-115 (256)
371 cd03809 GT1_mtfB_like This fam 22.2 1E+02 0.0022 25.9 3.3 67 104-193 266-334 (365)
372 cd08185 Fe-ADH1 Iron-containin 22.1 3E+02 0.0065 24.7 6.6 13 109-121 82-94 (380)
373 COG0062 Uncharacterized conser 22.1 1.9E+02 0.0042 24.2 4.9 40 108-149 117-160 (203)
374 PRK12367 short chain dehydroge 22.1 1.3E+02 0.0029 25.1 4.0 29 47-76 16-44 (245)
375 TIGR03575 selen_PSTK_euk L-ser 22.1 3E+02 0.0065 24.9 6.4 50 140-192 125-175 (340)
376 PF01116 F_bP_aldolase: Fructo 22.0 1.2E+02 0.0026 26.7 3.8 31 101-131 193-224 (287)
377 CHL00175 minD septum-site dete 22.0 2.1E+02 0.0047 24.2 5.4 38 9-49 10-47 (281)
378 COG0281 SfcA Malic enzyme [Ene 21.9 1.8E+02 0.0038 27.4 5.0 34 105-146 264-298 (432)
379 PRK08339 short chain dehydroge 21.9 1.4E+02 0.0029 25.0 4.0 18 36-53 22-39 (263)
380 PRK05867 short chain dehydroge 21.9 4.4E+02 0.0095 21.4 7.4 54 15-76 10-63 (253)
381 PRK09004 FMN-binding protein M 21.8 2.1E+02 0.0046 22.1 4.9 7 69-75 112-118 (146)
382 PRK08217 fabG 3-ketoacyl-(acyl 21.8 1.4E+02 0.003 24.1 4.0 17 36-52 19-35 (253)
383 TIGR03366 HpnZ_proposed putati 21.8 2E+02 0.0044 24.1 5.2 83 46-131 122-208 (280)
384 PF05690 ThiG: Thiazole biosyn 21.8 66 0.0014 27.9 2.0 39 104-148 167-205 (247)
385 TIGR03371 cellulose_yhjQ cellu 21.7 1.9E+02 0.0042 23.6 4.9 34 14-50 1-34 (246)
386 PRK12422 chromosomal replicati 21.7 4.6E+02 0.01 24.4 7.8 104 34-146 121-241 (445)
387 PRK05920 aromatic acid decarbo 21.6 1.8E+02 0.0039 24.3 4.6 81 110-191 93-183 (204)
388 KOG1888 Putative phosphoinosit 21.5 44 0.00094 33.7 1.0 63 139-201 307-380 (868)
389 PRK08589 short chain dehydroge 21.5 1.4E+02 0.003 25.0 4.0 53 15-76 7-59 (272)
390 PRK08979 acetolactate synthase 21.5 5.8E+02 0.012 24.3 8.6 85 34-123 195-285 (572)
391 PRK09072 short chain dehydroge 21.4 1.4E+02 0.0031 24.6 4.0 29 15-51 6-34 (263)
392 cd01170 THZ_kinase 4-methyl-5- 21.4 4.1E+02 0.0088 22.3 6.9 67 57-149 18-87 (242)
393 cd06309 PBP1_YtfQ_like Peripla 21.4 1.9E+02 0.0042 23.6 4.9 38 106-148 51-88 (273)
394 PRK08264 short chain dehydroge 21.3 4.3E+02 0.0093 21.1 9.3 29 47-76 8-37 (238)
395 TIGR00035 asp_race aspartate r 21.3 4.1E+02 0.0089 22.0 6.8 77 115-193 4-97 (229)
396 PRK14072 6-phosphofructokinase 21.2 4E+02 0.0088 24.7 7.3 55 18-76 73-138 (416)
397 TIGR02076 pyrH_arch uridylate 21.2 1.2E+02 0.0026 25.0 3.5 36 20-55 5-43 (221)
398 PLN02949 transferase, transfer 21.2 2.8E+02 0.006 25.9 6.2 71 105-194 349-421 (463)
399 PRK00071 nadD nicotinic acid m 21.1 1.5E+02 0.0033 24.1 4.1 26 14-39 3-28 (203)
400 COG0796 MurI Glutamate racemas 21.1 5.7E+02 0.012 22.4 16.6 154 28-195 49-222 (269)
401 COG1763 MobB Molybdopterin-gua 21.1 2E+02 0.0044 23.1 4.6 33 14-50 2-34 (161)
402 PRK02551 flavoprotein NrdI; Pr 21.1 1.3E+02 0.0028 24.0 3.5 44 5-51 85-128 (154)
403 PRK07062 short chain dehydroge 21.0 1.4E+02 0.003 24.6 3.9 32 15-54 9-40 (265)
404 PF00464 SHMT: Serine hydroxym 21.0 63 0.0014 29.9 1.9 43 33-75 307-359 (399)
405 COG0148 Eno Enolase [Carbohydr 20.9 3.7E+02 0.008 25.2 6.7 67 102-169 319-385 (423)
406 PRK07814 short chain dehydroge 20.9 1.5E+02 0.0032 24.6 4.1 32 15-54 11-42 (263)
407 cd04246 AAK_AK-DapG-like AAK_A 20.8 2.4E+02 0.0051 23.6 5.3 34 20-54 6-41 (239)
408 cd06318 PBP1_ABC_sugar_binding 20.8 2E+02 0.0042 23.6 4.8 37 107-148 52-88 (282)
409 smart00516 SEC14 Domain in hom 20.8 2.8E+02 0.006 20.7 5.3 63 123-190 79-145 (158)
410 PF01989 DUF126: Protein of un 20.8 64 0.0014 23.1 1.5 36 110-145 27-62 (82)
411 COG0061 nadF NAD kinase [Coenz 20.7 1.4E+02 0.003 26.0 3.9 47 114-165 58-107 (281)
412 TIGR03087 stp1 sugar transfera 20.7 3.2E+02 0.0069 24.2 6.4 66 106-194 293-361 (397)
413 PF09848 DUF2075: Uncharacteri 20.7 5.9E+02 0.013 22.5 8.9 88 105-195 112-216 (352)
414 TIGR01470 cysG_Nterm siroheme 20.6 1.2E+02 0.0027 25.0 3.5 32 47-80 11-42 (205)
415 PRK08303 short chain dehydroge 20.5 1.4E+02 0.003 25.9 3.9 32 15-54 9-40 (305)
416 PRK00536 speE spermidine synth 20.5 4E+02 0.0086 23.1 6.7 30 112-150 74-104 (262)
417 PRK02122 glucosamine-6-phospha 20.5 3.9E+02 0.0084 26.4 7.3 42 110-152 58-101 (652)
418 cd03133 GATase1_ES1 Type 1 glu 20.3 1.3E+02 0.0027 25.3 3.4 12 114-125 85-96 (213)
419 PF02698 DUF218: DUF218 domain 20.3 3.9E+02 0.0085 20.2 6.1 8 111-118 2-9 (155)
420 KOG4435 Predicted lipid kinase 20.3 5.3E+02 0.011 24.4 7.6 99 93-206 96-196 (535)
421 COG4221 Short-chain alcohol de 20.2 2.6E+02 0.0057 24.3 5.4 48 10-64 1-48 (246)
422 PF00890 FAD_binding_2: FAD bi 20.2 95 0.0021 27.8 2.9 28 48-77 2-29 (417)
423 PRK05713 hypothetical protein; 20.2 2.1E+02 0.0046 24.9 5.0 45 140-186 192-236 (312)
424 PRK05723 flavodoxin; Provision 20.2 2.1E+02 0.0045 22.5 4.5 35 16-50 86-120 (151)
425 PLN02178 cinnamyl-alcohol dehy 20.2 6.2E+02 0.013 22.5 10.7 31 47-79 181-211 (375)
426 KOG1098 Putative SAM-dependent 20.1 3.8E+02 0.0083 26.8 6.9 49 27-76 11-75 (780)
427 PRK09291 short chain dehydroge 20.0 1.6E+02 0.0035 23.9 4.1 32 15-54 3-34 (257)
428 TIGR02329 propionate_PrpR prop 20.0 7.8E+02 0.017 23.6 12.9 146 6-157 89-280 (526)
429 TIGR00520 asnASE_II L-asparagi 20.0 1.4E+02 0.003 27.1 3.9 34 111-147 106-139 (349)
No 1
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=100.00 E-value=9.2e-56 Score=362.13 Aligned_cols=178 Identities=43% Similarity=0.818 Sum_probs=170.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCcccccccCCCCCcee
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEV 94 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~ 94 (206)
++|||||||+.+++++|++.|++||++||++|+.||||||..|+|+++++||+++||+|+||+|..+...+.+++.+++.
T Consensus 1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~ 80 (178)
T TIGR00730 1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTEL 80 (178)
T ss_pred CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCce
Confidence 48999999999999999999999999999999999999995599999999999999999999999887777788888899
Q ss_pred eccCCHHHHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccC
Q 028644 95 KPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRS 174 (206)
Q Consensus 95 ~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~ 174 (206)
+.+++|++||.+|++.||+||++|||+|||+|++++|+|.|+|+++||++++|++|||+++++|+++|+++||++++..+
T Consensus 81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~ 160 (178)
T TIGR00730 81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLK 160 (178)
T ss_pred EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCHHHHHHHhHhc
Q 028644 175 ILVSAPNAKELVQKLEVG 192 (206)
Q Consensus 175 ~i~~~~~~ee~~~~l~~~ 192 (206)
.++++||++|++++|++|
T Consensus 161 ~~~~~d~~~e~~~~i~~~ 178 (178)
T TIGR00730 161 LIHVVSRPDELIEQVQNY 178 (178)
T ss_pred cEEEcCCHHHHHHHHHhC
Confidence 999999999999999764
No 2
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=100.00 E-value=6.7e-46 Score=309.78 Aligned_cols=191 Identities=35% Similarity=0.595 Sum_probs=174.6
Q ss_pred hHHHHHccCCCceEEEEcCCCCCCChH-HHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCccc
Q 028644 4 NKAAAKAMSRFKRVCVFCGSSTGKRNC-YRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLM 82 (206)
Q Consensus 4 ~~~~~~~~~~~~~I~Vfggs~~~~~~~-~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~ 82 (206)
++++......+++|||||||+.+.++. |++.|++||++||++|+.|+|||++ |+|+|+++||.++||.|+||+|....
T Consensus 4 ~~~~~~~~~~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tGG~~-GiMea~~~gA~~~gg~~vGi~p~~~~ 82 (205)
T COG1611 4 LRFARLLFIGIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITGGGP-GVMEAVARGALEAGGLVVGILPGLLH 82 (205)
T ss_pred hhhhhhcccCcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeCCch-hhhhHHHHHHHHcCCeEEEecCCCch
Confidence 455666677789999999999866666 9999999999999999988999987 99999999999999999999998776
Q ss_pred ccccCCCCCceeeccCCHHHHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCC--CccEEEEecCccchhHHHHHH
Q 028644 83 NKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIH--DKPVGLINVDGYYNSLLNFID 160 (206)
Q Consensus 83 ~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~--~kPiill~~~g~w~~l~~~l~ 160 (206)
..+.++...++++.+.+|++||..|+++|||||++|||+||++|++++|+|.|++.+ .+|.++++.++||+++.+|++
T Consensus 83 ~~e~~~~~~~~l~~~~~~~~Rk~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~~l~~~~~i~~~~~~~~~~~~~~d 162 (205)
T COG1611 83 EQEPPNYEVIELITGMDFAERKRAMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNGNGFWEPLLEFLD 162 (205)
T ss_pred hhccCccccceeeecCCHHHHHHHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcccCCCCcEEecchHHHHHHHHHhC
Confidence 555344556788899999999999999999999999999999999999999999988 889889999999999999998
Q ss_pred -HHHHcCCCCccccCcEEEcCCHHHHHHHhHhccCC
Q 028644 161 -KAVDDGFISPSQRSILVSAPNAKELVQKLEVGFLF 195 (206)
Q Consensus 161 -~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~~~~~~ 195 (206)
+++.++++++...+.++++||++++++.+.++.++
T Consensus 163 ~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (205)
T COG1611 163 PHLIVEGLISEADRELLIVVDDAEEAIDAILKYLPP 198 (205)
T ss_pred HHHHHhhcCChhhhhheeeecCHHHHHHHHHHhccc
Confidence 89999999999999999999999999999999876
No 3
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=100.00 E-value=1.4e-42 Score=279.65 Aligned_cols=158 Identities=24% Similarity=0.357 Sum_probs=135.1
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCcccccccCCCCCce
Q 028644 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGE 93 (206)
Q Consensus 14 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~ 93 (206)
|++|||||||+ .++.|++.|++||++||++|+.|||||++ |+|++++++|+++||+|+||+|..+. ..++..+.
T Consensus 1 ~~~I~V~gss~--~~~~~~~~A~~lg~~La~~g~~lv~Gg~~-GlM~a~a~ga~~~gg~viGVlp~~l~---~~~~~~~~ 74 (159)
T TIGR00725 1 MVQIGVIGSSN--KSEELYEIAYRLGKELAKKGHILINGGRT-GVMEAVSKGAREAGGLVVGILPDEDF---AGNPYLTI 74 (159)
T ss_pred CeEEEEEeCCC--CChHHHHHHHHHHHHHHHCCCEEEcCCch-hHHHHHHHHHHHCCCeEEEECChhhc---cCCCCceE
Confidence 57999999988 37899999999999999999999999987 99999999999999999999998763 22333443
Q ss_pred eeccCCHHHHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCcccc
Q 028644 94 VKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQR 173 (206)
Q Consensus 94 ~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~ 173 (206)
.+....+++||++|++.||+||++|||+|||+|++++|+ ++||++++|.+|||+++++++ +.+.+|++ +
T Consensus 75 ~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~------~~kpv~~l~~~g~~~~~l~~~--~~~~~~~~-~-- 143 (159)
T TIGR00725 75 KVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYA------LGGPVVVLRGTGGWTDRLSQV--LIEGVYLD-E-- 143 (159)
T ss_pred EEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHH------cCCCEEEEECCCcchHHHHHH--Hhcccccc-c--
Confidence 444555588999999999999999999999999999996 689999999999999998864 44444444 3
Q ss_pred CcEEEcCCHHHHHHHh
Q 028644 174 SILVSAPNAKELVQKL 189 (206)
Q Consensus 174 ~~i~~~~~~ee~~~~l 189 (206)
.+.+++|++|+++.+
T Consensus 144 -~~~~~~~~~e~~~~~ 158 (159)
T TIGR00725 144 -RVIVEITPAEAVKLA 158 (159)
T ss_pred -eeEecCCHHHHHHhh
Confidence 599999999999864
No 4
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=100.00 E-value=7.9e-40 Score=256.28 Aligned_cols=131 Identities=44% Similarity=0.768 Sum_probs=125.0
Q ss_pred hHHHHHHHHhcCCeEEEEeCCcccc-cccCCCCCceeeccCCHHHHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhC
Q 028644 59 MGLVSHVVHRGGGHVLGIIPKTLMN-KEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLG 137 (206)
Q Consensus 59 M~a~~~ga~~~gG~viGv~P~~~~~-~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g 137 (206)
|+|+++||+++||.|+||+|+...+ ++.+++.+++++.+++|++||+.|+++||+||++|||+|||+|++++|+|.|++
T Consensus 1 M~a~~~ga~~~gG~viGi~p~~~~~~~~~~~~~~~~~~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~ 80 (133)
T PF03641_consen 1 MGAVAKGAKEAGGRVIGIIPEFLFPFEEPPNPYVTELIIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLG 80 (133)
T ss_dssp HHHHHHHHHHTTTTEEEEEETTGTTTTTTCCTTSSEEEEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCeEEEEecCccccccccCCcccCceeEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhc
Confidence 9999999999999999999999888 667778888999999999999999999999999999999999999999999999
Q ss_pred CCCc-cEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHh
Q 028644 138 IHDK-PVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKL 189 (206)
Q Consensus 138 ~~~k-Piill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l 189 (206)
.++| |++|+|.+|||+++++|+++|+++||+++++.+.++++||++|++++|
T Consensus 81 ~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 81 RHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp SSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred cccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 8877 999999999999999999999999999999999999999999999975
No 5
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=99.69 E-value=1.7e-15 Score=128.05 Aligned_cols=155 Identities=14% Similarity=0.176 Sum_probs=116.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCccc---ccc------
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLM---NKE------ 85 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~---~~e------ 85 (206)
+.|+|.| ||.. .+...+.|+++++.|+++|++||+|++. |+|.+++++|+++||.+|+|+|..+. |.+
T Consensus 45 ~~iaIvG-sR~~-s~~~~~~a~~l~~~l~~~g~~IVSG~A~-GiD~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~ 121 (220)
T TIGR00732 45 RKVAIVG-TRRP-TKYGERWTRKLAEELAKNGVTIVSGLAL-GIDGIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAA 121 (220)
T ss_pred CeEEEEc-CCCC-CHHHHHHHHHHHHHHHhCCCEEEcCchh-hHHHHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHH
Confidence 6899995 5654 4556788999999999999999999997 99999999999999999999997652 211
Q ss_pred -cCCCC---C-----ceeeccCCHHHHHHHHHhhCCeeEEecCC--cCcHHHHHHHHHHHHhCCCCccEEEEecCccchh
Q 028644 86 -ITGET---V-----GEVKPVADMHQRKAEMARNSDCFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLINVDGYYNS 154 (206)
Q Consensus 86 -~~~~~---~-----~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG--~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~ 154 (206)
...+. + .......+|..|++++...||++|++..+ .||+.++-.++ ..+|||+.+-.. .+++
T Consensus 122 ~i~~~gglliSe~p~~~~~~~~~f~~RNriia~ls~~vivve~~~~sGtl~ta~~A~------~~gr~v~~~pg~-~~~~ 194 (220)
T TIGR00732 122 KIAENGGLLLSEYPPDTKPIKYNFPKRNRIISGLSRAVLVVEAPLKSGALITARYAL------EQGREVFAYPGD-LNSP 194 (220)
T ss_pred HHHHcCCEEEEecCCCCCCCcccHHHHHHHHHHhcCEEEEEECCCCCchHHHHHHHH------HhCCcEEEEcCC-CCCc
Confidence 00001 0 11112347789999999999999999987 79999998887 358999998543 5555
Q ss_pred HHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHH
Q 028644 155 LLNFIDKAVDDGFISPSQRSILVSAPNAKELVQK 188 (206)
Q Consensus 155 l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~ 188 (206)
.-+--..++++|- ..+.+++|+++.
T Consensus 195 ~~~G~~~Li~~GA---------~~i~~~~d~~~~ 219 (220)
T TIGR00732 195 ESDGCHKLIEQGA---------ALITSAKDILET 219 (220)
T ss_pred cchHHHHHHHCCC---------EEECCHHHHHHh
Confidence 4454556777762 345788888764
No 6
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=99.40 E-value=3.3e-12 Score=107.40 Aligned_cols=143 Identities=17% Similarity=0.164 Sum_probs=87.3
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCccc---cccc----
Q 028644 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLM---NKEI---- 86 (206)
Q Consensus 14 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~---~~e~---- 86 (206)
.+.|+|.| ||.. ++...+.|+++++.|+++|++||+|+.. |++.+++++|+++||.+|+|+|..+. |.+.
T Consensus 44 ~~~iaIvG-sR~~-s~~g~~~a~~l~~~l~~~g~~vvSGlA~-GiD~~ah~~al~~~g~tIaVl~~gl~~~yP~~n~~l~ 120 (212)
T PF02481_consen 44 QPSIAIVG-SRNP-SEYGLKFAKKLARELAKAGIVVVSGLAK-GIDAAAHRGALDAGGPTIAVLACGLDNIYPKENRELA 120 (212)
T ss_dssp S-EEEEE---SS---HHHHHHHHHHHHHHHHHT-EEEE---T-THHHHHHHHHTTT---EEEE-SS-TTS-SSGGGHHHH
T ss_pred CceEEEEc-CCCC-CHHHHHHHHHHHHHHhhCCEEEEcCCCC-CHHHHHHHHHHHccCCEEEEECCCcccccchhhHHHH
Confidence 56899995 5654 5677899999999999999999999997 99999999999999999999987652 3221
Q ss_pred ---C-CCC-------CceeeccCCHHHHHHHHHhhCCeeEEecCC--cCcHHHHHHHHHHHHhCCCCccEEEEecCccch
Q 028644 87 ---T-GET-------VGEVKPVADMHQRKAEMARNSDCFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLINVDGYYN 153 (206)
Q Consensus 87 ---~-~~~-------~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG--~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~ 153 (206)
. .+. .........|.+|++++...||++|++.-+ .||+.-+-.++. .+|||+.+.. ..++
T Consensus 121 ~~i~~~~glliSe~~p~~~~~~~~f~~RNRiiaaLs~~~vvvea~~~sGt~~ta~~A~~------~gr~v~~vp~-~~~~ 193 (212)
T PF02481_consen 121 ERILDEGGLLISEYPPGTKPSRWRFPERNRIIAALSDAVVVVEAGEKSGTLHTARFALE------QGRPVFAVPG-PIDD 193 (212)
T ss_dssp HHHHHTT-EEEE-S-TT----TTHHHHHHHHHHHH-S-EEE----TT-THHHHHHHHHH------HT--EEE-----TT-
T ss_pred HHHHhcCcEEEeCCCCCCCcccccChHHHHHHHHhCCeEEEEecCCCChHHHHHHHHHH------cCCeEEEEeC-CCCC
Confidence 0 111 111123356789999999999999999644 699988877773 5799998743 3666
Q ss_pred hHHHHHHHHHHcC
Q 028644 154 SLLNFIDKAVDDG 166 (206)
Q Consensus 154 ~l~~~l~~~~~~g 166 (206)
+.-+.-.+++++|
T Consensus 194 ~~~~G~~~Li~~G 206 (212)
T PF02481_consen 194 PNSEGNNELIKEG 206 (212)
T ss_dssp GGGHHHHHHHHTT
T ss_pred cccHHHHHHHHcC
Confidence 6666666677776
No 7
>PRK10736 hypothetical protein; Provisional
Probab=99.36 E-value=3e-11 Score=109.18 Aligned_cols=157 Identities=13% Similarity=0.141 Sum_probs=116.5
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCccc---ccc------
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLM---NKE------ 85 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~---~~e------ 85 (206)
+.|+|.| ||.. ++...+.++++++.||++|++||+|+.. |+..+++++|+++||.+|+|++..+. |.+
T Consensus 108 ~~iaiVG-sR~~-s~yg~~~~~~l~~~la~~g~~IVSGlA~-GiD~~AH~~aL~~~g~TIaVlg~Gld~~YP~~n~~L~~ 184 (374)
T PRK10736 108 PQLAVVG-SRAH-SWYGERWGRLFCEELAKNGLTITSGLAR-GIDGVAHRAALQAGGKTIAVLGNGLENIYPRRHARLAE 184 (374)
T ss_pred CeEEEEC-CCCC-CHHHHHHHHHHHHHHHHCCCEEECcchh-hHHHHHHHHHHHcCCCEEEEECCCCCccCCHhHHHHHH
Confidence 5799995 5654 4666788999999999999999999997 99999999999999999999876542 321
Q ss_pred -c-CCC-------CCceeeccCCHHHHHHHHHhhCCeeEEecCC--cCcHHHHHHHHHHHHhCCCCccEEEEecCccchh
Q 028644 86 -I-TGE-------TVGEVKPVADMHQRKAEMARNSDCFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLINVDGYYNS 154 (206)
Q Consensus 86 -~-~~~-------~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG--~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~ 154 (206)
. ... +........+|..||+++...|+++||+--+ .|||.-.-.++ ..+|+|+.+-+ ..+++
T Consensus 185 ~I~~~~G~liSEyp~~~~p~~~~Fp~RNRIIagLS~~viVvEA~~kSGsliTA~~Al------~~gR~VfavPG-~i~~~ 257 (374)
T PRK10736 185 SIIEQGGALVSEFPLDTPPLAANFPRRNRIISGLSKGVLVVEAALRSGSLVTARCAL------EQGRDVFALPG-PIGNP 257 (374)
T ss_pred HHHhcCCEEEECCCCCCCCChhhhhHhhhHHHHhCCeEEEEEeCCCCchHHHHHHHH------HhCCeEEEEcC-CCCCc
Confidence 1 001 0111122358899999999999999999755 68987666665 46899988843 35555
Q ss_pred HHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHhH
Q 028644 155 LLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLE 190 (206)
Q Consensus 155 l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~ 190 (206)
.-+--++++.+| -..+.+++|+++.+.
T Consensus 258 ~s~G~n~LI~~G---------A~lv~~~~Di~~~l~ 284 (374)
T PRK10736 258 GSEGPHWLIKQG---------AYLVTSPEDILENLQ 284 (374)
T ss_pred cchhHHHHHHCC---------CEEeCCHHHHHHHhh
Confidence 545455667666 245678888888874
No 8
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=99.21 E-value=4e-10 Score=101.07 Aligned_cols=159 Identities=16% Similarity=0.188 Sum_probs=110.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCccc---cccc-----
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLM---NKEI----- 86 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~---~~e~----- 86 (206)
+.|+|.| ||.. +..-.+.++.+++.|+++|++||+|+.. |+..+++++|+++||++|+|+...+. |++.
T Consensus 112 ~~vaIVG-sR~~-S~~g~~~~~~~a~~L~~~g~~IvSGlA~-GID~~AH~aaL~~~G~TiaVl~~Gld~iYP~~n~~l~~ 188 (350)
T COG0758 112 PSVAIVG-SRKP-SKYGLDYTRDLAEYLAQNGITIVSGLAR-GIDTEAHKAALNAGGKTIAVLATGLDKIYPRENIKLAE 188 (350)
T ss_pred CceEEEe-CCCC-CHhHHHHHHHHHHHHHhCCeEEEecCcc-eecHHHHHHHHHcCCcEEEEEcCCCCccCChhhHHHHH
Confidence 6899995 5655 4566789999999999999999999998 99999999999999999999876542 2210
Q ss_pred --CCC-------CCceeeccCCHHHHHHHHHhhCCeeEEecCC--cCcHHHHHHHHHHHHhCCCCccEEEEecCccchhH
Q 028644 87 --TGE-------TVGEVKPVADMHQRKAEMARNSDCFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSL 155 (206)
Q Consensus 87 --~~~-------~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG--~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l 155 (206)
..+ +........+|..||+++...||++||+-.+ +|+|.=.-.++. .++.|+.+-++ ..++.
T Consensus 189 ~i~~~g~liSEypp~~~p~~~~Fp~RNRiIagLS~gvlVvEA~~kSGSLiTA~~Ale------qgR~VfavPg~-~~~~~ 261 (350)
T COG0758 189 KIAENGLLISEYPPDTEPNKGNFPRRNRLIAGLSDGVLVVEAGLKSGSLITAKYALE------QGRDVFAVPGS-IDNPR 261 (350)
T ss_pred HHHhcCeEEeecCCCCCcccccchHHHHHHHHhcCceEEEecCcccccHHHHHHHHH------cCCeeEEcCCC-ccccc
Confidence 011 1112233458999999999999999999877 699966665553 56777766442 22322
Q ss_pred HHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHhHhc
Q 028644 156 LNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEVG 192 (206)
Q Consensus 156 ~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~~~ 192 (206)
-.=-.+++++|- ..+.+.+++++.+...
T Consensus 262 s~G~~~LI~~GA---------~lv~~~~dil~~l~~~ 289 (350)
T COG0758 262 SEGCNKLIKEGA---------KLVTSAEDILEELNAL 289 (350)
T ss_pred ccchHHHHHccc---------hhcccHHHHHHHhhhh
Confidence 111234555552 2345556666655443
No 9
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=97.21 E-value=0.0034 Score=49.84 Aligned_cols=93 Identities=22% Similarity=0.199 Sum_probs=53.3
Q ss_pred EEEcCCccChhHHHHHHHHhcCCeEEEEeCCccccccc-CCCCCc-eeeccCCHHHHHHHHHhhCCeeEEecCCc---Cc
Q 028644 49 LVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEI-TGETVG-EVKPVADMHQRKAEMARNSDCFIALPGGY---GT 123 (206)
Q Consensus 49 lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~-~~~~~~-~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~---GT 123 (206)
||+||-. |+..|+-+.|+++|=..=|-.|......+- .+..|. ......+...|.+..++.||+-++|-=|. ||
T Consensus 1 IiSGGQT-GvDRAALDaAi~~gi~~GGWcP~GR~aEDG~ip~~Y~L~E~~~~~Y~~RT~~NV~DsDgTlI~~~g~l~GGt 79 (145)
T PF12694_consen 1 IISGGQT-GVDRAALDAAIAHGIPHGGWCPKGRRAEDGPIPARYPLQETPSSGYRQRTEWNVRDSDGTLIFTRGELTGGT 79 (145)
T ss_dssp EE----T-THHHHHHHHHHHTT--EE-EE-GGG--TTSS--TTS--EE-SS--HHHHHHHHHHTSSEEEEEESSS--HHH
T ss_pred CccCccc-cHHHHHHHHHHHcCCCccCcCCCCcccccCcCCccccceecCCCCHHHHHHhhhhhcCeEEEEecCCCCcHH
Confidence 6899986 999999999999998888888876543332 122221 22345788999999999999988776442 55
Q ss_pred HHHHHHHHHHHHhCCCCccEEEEec
Q 028644 124 LEELLEVITWAQLGIHDKPVGLINV 148 (206)
Q Consensus 124 L~El~~~~~~~~~g~~~kPiill~~ 148 (206)
..=+..+ .++.||+.+++.
T Consensus 80 ~lT~~~a------~~~~KP~l~i~~ 98 (145)
T PF12694_consen 80 ALTVEFA------RKHGKPCLHIDL 98 (145)
T ss_dssp HHHHHHH------HHTT--EEEETS
T ss_pred HHHHHHH------HHhCCCEEEEec
Confidence 3222222 268999998854
No 10
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.94 E-value=0.14 Score=52.94 Aligned_cols=187 Identities=19% Similarity=0.199 Sum_probs=109.8
Q ss_pred CceEEEEcCCCCCC-ChHHHHHHHH-HHHHHHHCCCeEEEcCCccChhHHHHHHHHhcC-----Ce--EEEEeCCccccc
Q 028644 14 FKRVCVFCGSSTGK-RNCYRDAALD-LGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGG-----GH--VLGIIPKTLMNK 84 (206)
Q Consensus 14 ~~~I~Vfggs~~~~-~~~~~~~A~~-lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~g-----G~--viGv~P~~~~~~ 84 (206)
.-.|.|-||...-. .|.+.+.-++ |-+..-..|-=|+|||-..|+|.-+.+++.+++ ++ +|||-|-.....
T Consensus 118 ~LvISV~GG~~nF~L~pkl~~~frkGLvkaAqtTGAWIiTsG~~tGv~khVg~Al~dh~~~s~~~~ivaiGiApWGvv~n 197 (1381)
T KOG3614|consen 118 KLVISVHGGLQNFELQPKLKSVFRKGLIKAAQTTGAWIITSGLDTGVMKHVGSALRDHSLASSGGKIVAIGIAPWGIVKN 197 (1381)
T ss_pred cEEEEEecCCCCccccHHHHHHHHHHHHHHHhhcCeEEEecCcccchHHHHHHHHHhccchhccCceEEEeeccceeeec
Confidence 34799999887643 5666544433 333333479999999999999999999999864 23 366655322110
Q ss_pred ----------------ccC-------CCCCceeeccCC---------HHHHHHH--HHh----hCC-------eeEEecC
Q 028644 85 ----------------EIT-------GETVGEVKPVAD---------MHQRKAE--MAR----NSD-------CFIALPG 119 (206)
Q Consensus 85 ----------------e~~-------~~~~~~~~~~~~---------~~~Rk~~--m~~----~sD-------a~IvlpG 119 (206)
+.+ ++..+..+.+++ ..-|+++ -+. .+- ..+++.|
T Consensus 198 r~~lI~~d~~~~Y~~~~~~~~~L~~Ln~nhShFiLvDnGTvGkygae~~lR~~LEk~Is~q~~~~~~~~~iPvvc~v~eG 277 (1381)
T KOG3614|consen 198 RDDLIGGDFTVSYQTDDNPLNKLTILNNNHSHFILVDNGTVGKYGAETKLRLRLEKYISLQKINSGGTGKIPVVCLVLEG 277 (1381)
T ss_pred hhhhccCCcceeeeecCCCCcceeeccCCCceeEEecCCccCccchHHHHHHhchhhHhhhccCCCCCCccceEEEEecC
Confidence 000 111122222221 1223221 111 011 4778899
Q ss_pred CcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHH-HHHcCCCCccccCc-EE-----E---cCCHHHHHHHh
Q 028644 120 GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDK-AVDDGFISPSQRSI-LV-----S---APNAKELVQKL 189 (206)
Q Consensus 120 G~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~-~~~~gfi~~~~~~~-i~-----~---~~~~ee~~~~l 189 (206)
|.+|+.=+.+..+. ..+.|++++.++|--.++++++-+ ..+.|.++...... ++ + -.|.++++++|
T Consensus 278 g~nti~~I~~~v~~----~~~iPvvVc~GSGraADilA~~~~~~~~~g~l~~~~~~~i~~~i~~~~~fs~~d~~~l~~~l 353 (1381)
T KOG3614|consen 278 GPNTLAIILDYVTD----KPPIPVVVCAGSGRAADILAFAHEEHGAPGILSDAEREQILHLIRLTFEFSEFDAEKLIKWL 353 (1381)
T ss_pred CchHHHHHHHHhcc----CCCCceEEEcCCchHHHHHHHHHHhhcCCCcccHHHHHHHHHhHHHHccCCHHHHHHHHHHH
Confidence 99999888777631 245699999999999999998754 55666666554332 11 1 12455556666
Q ss_pred Hhcc-CCccceeeccc
Q 028644 190 EVGF-LFVSRICFRFK 204 (206)
Q Consensus 190 ~~~~-~~~~~~~~~~~ 204 (206)
++-. +-..=.|||+.
T Consensus 354 ~ec~~~k~LlTvf~~g 369 (1381)
T KOG3614|consen 354 RECLYRKELLTVFRLG 369 (1381)
T ss_pred HHHhhhhhhhheeecc
Confidence 5543 33345566653
No 11
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=95.26 E-value=0.037 Score=41.48 Aligned_cols=46 Identities=35% Similarity=0.344 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHhhCCeeEEecCC----cCcHHHHHHHHHHHHhCCCCccEEEEecC
Q 028644 98 ADMHQRKAEMARNSDCFIALPGG----YGTLEELLEVITWAQLGIHDKPVGLINVD 149 (206)
Q Consensus 98 ~~~~~Rk~~m~~~sDa~IvlpGG----~GTL~El~~~~~~~~~g~~~kPiill~~~ 149 (206)
....+|....++.||++|+.-.+ .||.-|+..++. .+|||+++..+
T Consensus 49 ~~i~~~d~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~a------lgkpv~~~~~d 98 (113)
T PF05014_consen 49 REIFERDLEGIRECDIVIANLDGFRPDSGTAFELGYAYA------LGKPVILLTED 98 (113)
T ss_dssp HHHHHHHHHHHHHSSEEEEEECSSS--HHHHHHHHHHHH------TTSEEEEEECC
T ss_pred HHHHHHHHHHHHHCCEEEEECCCCCCCCcHHHHHHHHHH------CCCEEEEEEcC
Confidence 44568888999999998888766 899999999985 57999999765
No 12
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=95.11 E-value=0.54 Score=38.56 Aligned_cols=117 Identities=18% Similarity=0.184 Sum_probs=56.6
Q ss_pred CChHHHHHHHHHHHHH---HHCCCe-EEEcCCccChhHHHHHHHHhcC-----CeEEEEeCCcccccccCCC--------
Q 028644 27 KRNCYRDAALDLGQEL---VSKKLD-LVYGGGSVGLMGLVSHVVHRGG-----GHVLGIIPKTLMNKEITGE-------- 89 (206)
Q Consensus 27 ~~~~~~~~A~~lG~~l---A~~g~~-lv~GGg~~GlM~a~~~ga~~~g-----G~viGv~P~~~~~~e~~~~-------- 89 (206)
.+|.+...-..|-+.| -++|++ ++|||.. |+.--+++.+++.- =+.+-++|-......+..+
T Consensus 20 ~~~~~~~ik~~L~~~i~~lie~G~~~fi~Ggal-G~D~waae~vl~LK~~yp~ikL~~v~Pf~~q~~~W~~~~q~~y~~i 98 (177)
T PF06908_consen 20 KDPKIQVIKKALKKQIIELIEEGVRWFITGGAL-GVDLWAAEVVLELKKEYPEIKLALVLPFENQGNNWNEANQERYQSI 98 (177)
T ss_dssp --HHHHHHHHHHHHHHHHHHTTT--EEEE---T-THHHHHHHHHHTTTTT-TT-EEEEEESSB-TTTTS-HHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHCCCCEEEECCcc-cHHHHHHHHHHHHHhhhhheEEEEEEcccchhhcCCHHHHHHHHHH
Confidence 3555544444444433 347885 4677765 99999999999854 3455567743322221100
Q ss_pred --CCceeecc--------CCHHHHHHHHHhhCCeeEEec-----CCcCcHHHHHHHHHHHHhCCCCccEEEEec
Q 028644 90 --TVGEVKPV--------ADMHQRKAEMARNSDCFIALP-----GGYGTLEELLEVITWAQLGIHDKPVGLINV 148 (206)
Q Consensus 90 --~~~~~~~~--------~~~~~Rk~~m~~~sDa~Ivlp-----GG~GTL~El~~~~~~~~~g~~~kPiill~~ 148 (206)
..+....+ .-|..|++.|+++||.+|++= ||....-+-..... ..++.||.+++.
T Consensus 99 l~~aD~v~~vs~~~Y~~~~~~~~rn~fMvdhsd~~iavyD~~~~G~t~~~~~~a~~~~----~~~~y~i~~I~~ 168 (177)
T PF06908_consen 99 LEQADFVVVVSERPYYSPGQLQKRNRFMVDHSDGLIAVYDGEPEGGTKYTVRAAKKYQ----EQKGYPIDLIDP 168 (177)
T ss_dssp HHH-SEEEESSSSB---HHHHHHHHHHHHHHSSEEEEE--TTT--TTHHHHHHHHHHH----HHH---EEEE-H
T ss_pred HHhCCEEEEccCCCCCCHHHHHHHhHHHHhCCCeEEEEEeCCCCCcchHHHHHHHHHh----hccCCeEEEecH
Confidence 01222222 235699999999999988883 22222222222111 134678888764
No 13
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=95.07 E-value=0.58 Score=40.35 Aligned_cols=119 Identities=24% Similarity=0.244 Sum_probs=68.4
Q ss_pred CCCeEEEcCCccChhHHHHHHHHhcCC-eEEEEeCCcccccccCCCCCceeeccCCHH-HHHHHHHhhCCeeEEecCCcC
Q 028644 45 KKLDLVYGGGSVGLMGLVSHVVHRGGG-HVLGIIPKTLMNKEITGETVGEVKPVADMH-QRKAEMARNSDCFIALPGGYG 122 (206)
Q Consensus 45 ~g~~lv~GGg~~GlM~a~~~ga~~~gG-~viGv~P~~~~~~e~~~~~~~~~~~~~~~~-~Rk~~m~~~sDa~IvlpGG~G 122 (206)
.++.+||=||. |.- .+.+.+.+..+ .++-+-|... +.....+ ....+. ..-.-.+..||++|.- ||.+
T Consensus 192 ~~~iLv~~gg~-~~~-~~~~~l~~~~~~~~~v~g~~~~---~~~~~ni----~~~~~~~~~~~~~m~~ad~vIs~-~G~~ 261 (318)
T PF13528_consen 192 EPKILVYFGGG-GPG-DLIEALKALPDYQFIVFGPNAA---DPRPGNI----HVRPFSTPDFAELMAAADLVISK-GGYT 261 (318)
T ss_pred CCEEEEEeCCC-cHH-HHHHHHHhCCCCeEEEEcCCcc---cccCCCE----EEeecChHHHHHHHHhCCEEEEC-CCHH
Confidence 46777777764 655 55565555554 3333322211 1112222 122221 2223346889988776 7899
Q ss_pred cHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcC----CHHHHHHHhHh
Q 028644 123 TLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP----NAKELVQKLEV 191 (206)
Q Consensus 123 TL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~----~~ee~~~~l~~ 191 (206)
|+.|.. ..++|++++-..++++.... .+.+.+.|.. ...+ +++.+.++|++
T Consensus 262 t~~Ea~---------~~g~P~l~ip~~~~~EQ~~~-a~~l~~~G~~--------~~~~~~~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 262 TISEAL---------ALGKPALVIPRPGQDEQEYN-ARKLEELGLG--------IVLSQEDLTPERLAEFLER 316 (318)
T ss_pred HHHHHH---------HcCCCEEEEeCCCCchHHHH-HHHHHHCCCe--------EEcccccCCHHHHHHHHhc
Confidence 988875 36899999987777776554 2344555543 2323 67888888765
No 14
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=93.86 E-value=1.1 Score=35.32 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=48.8
Q ss_pred HHHHHHHHhhCCeeEEecCC----cCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcE
Q 028644 101 HQRKAEMARNSDCFIALPGG----YGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSIL 176 (206)
Q Consensus 101 ~~Rk~~m~~~sDa~IvlpGG----~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i 176 (206)
..|.+.+++.||.+|+.-|- ..|.-....+. ..+||+|++.....--+|.+.=. ...
T Consensus 63 ~iRT~~li~~aDvVVvrFGekYKQWNaAfDAg~a~------AlgKplI~lh~~~~~HpLKEvda-------------~A~ 123 (141)
T PF11071_consen 63 AIRTRTLIEKADVVVVRFGEKYKQWNAAFDAGYAA------ALGKPLITLHPEELHHPLKEVDA-------------AAL 123 (141)
T ss_pred HHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHH------HcCCCeEEecchhccccHHHHhH-------------hhH
Confidence 57999999999999998875 23322222222 25899999987666666655211 124
Q ss_pred EEcCCHHHHHHHhH
Q 028644 177 VSAPNAKELVQKLE 190 (206)
Q Consensus 177 ~~~~~~ee~~~~l~ 190 (206)
.+++||+++++.|+
T Consensus 124 a~~et~~Qvv~iL~ 137 (141)
T PF11071_consen 124 AVAETPEQVVEILR 137 (141)
T ss_pred hhhCCHHHHHHHHH
Confidence 67899999999874
No 15
>PRK10565 putative carbohydrate kinase; Provisional
Probab=93.10 E-value=0.46 Score=45.07 Aligned_cols=127 Identities=20% Similarity=0.175 Sum_probs=68.3
Q ss_pred CCCeEEEcCCccChhHHH---HHHHHhcC-CeEEEEeCCcccccccCCCCCceeeccCCHHHHHHHHHhhCCeeEEecCC
Q 028644 45 KKLDLVYGGGSVGLMGLV---SHVVHRGG-GHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGG 120 (206)
Q Consensus 45 ~g~~lv~GGg~~GlM~a~---~~ga~~~g-G~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG 120 (206)
.|+.+|-||.. +-++|+ +++|+..| |.|.=+.|....+ .......+++......+--..++..+|++++=||
T Consensus 254 ~G~vliigGs~-~~~GA~~Laa~aAlr~GaGlv~~~~~~~~~~--~~~~~~Pe~~~~~~~~~~~~~~~~~~~a~viGpG- 329 (508)
T PRK10565 254 HGRLLIIGGDH-GTAGAIRMAGEAALRSGAGLVRVLTRSENIA--PLLTARPELMVHELTPDSLEESLEWADVVVIGPG- 329 (508)
T ss_pred CCeEEEEECCC-CCccHHHHHHHHHHHhCCCeEEEEeChhhHH--HHhhcCceeEEecCCHhHHHHHhhcCCEEEEeCC-
Confidence 58899999976 666664 67777776 5665555654211 1111112333322111222334577899887776
Q ss_pred cCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHhH
Q 028644 121 YGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLE 190 (206)
Q Consensus 121 ~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~ 190 (206)
.|+-++...++... ...++|+| ++.++ +.++.. ... . ....+++.++.|+.+.+.
T Consensus 330 lg~~~~~~~~~~~~--~~~~~P~V-LDAda-----L~ll~~---~~~--~--~~~~VLTPh~gE~~rL~~ 384 (508)
T PRK10565 330 LGQQEWGKKALQKV--ENFRKPML-WDADA-----LNLLAI---NPD--K--RHNRVITPHPGEAARLLG 384 (508)
T ss_pred CCCCHHHHHHHHHH--HhcCCCEE-EEchH-----HHHHhh---Ccc--c--cCCeEECCCHHHHHHHhC
Confidence 77755554444222 24568974 57776 233321 100 0 113567788888777663
No 16
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=93.00 E-value=4.1 Score=36.19 Aligned_cols=78 Identities=12% Similarity=0.207 Sum_probs=54.6
Q ss_pred HHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccC--c-----EEEc
Q 028644 107 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRS--I-----LVSA 179 (206)
Q Consensus 107 m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~--~-----i~~~ 179 (206)
++..||+|||-+-..-=+.|. + ..+|||.++...+--+.+..+++.|.++|.+..-... . ..-.
T Consensus 225 ~La~ad~i~VT~DSvSMvsEA---~------~tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~~~~~~~~~~~~~pl 295 (311)
T PF06258_consen 225 FLAAADAIVVTEDSVSMVSEA---A------ATGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFTGWRDLEQWTPYEPL 295 (311)
T ss_pred HHHhCCEEEEcCccHHHHHHH---H------HcCCCEEEecCCCcchHHHHHHHHHHHCCCEEECCCcccccccccCCCc
Confidence 678999999988766555544 4 3689999998877555677788889999987653322 1 3445
Q ss_pred CCHHHHHHHhHhcc
Q 028644 180 PNAKELVQKLEVGF 193 (206)
Q Consensus 180 ~~~ee~~~~l~~~~ 193 (206)
|+.+.+.+.|.+..
T Consensus 296 ~et~r~A~~i~~r~ 309 (311)
T PF06258_consen 296 DETDRVAAEIRERL 309 (311)
T ss_pred cHHHHHHHHHHHHh
Confidence 66667777776544
No 17
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=92.98 E-value=4.9 Score=34.73 Aligned_cols=73 Identities=18% Similarity=0.103 Sum_probs=39.6
Q ss_pred HHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcC--CHH
Q 028644 106 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP--NAK 183 (206)
Q Consensus 106 ~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~--~~e 183 (206)
-++..||++|. ++|..|+-|. + ..++|++..+..+.-.....-.+.+.+. ....+.-.. |++
T Consensus 246 ~~l~~ad~~v~-~~g~~~l~Ea---~------~~g~Pvv~~~~~~~~~~~~~~~~~i~~~------~~G~~~~~~~~~~~ 309 (348)
T TIGR01133 246 AAYAAADLVIS-RAGASTVAEL---A------AAGVPAILIPYPYAADDQYYNAKFLEDL------GAGLVIRQKELLPE 309 (348)
T ss_pred HHHHhCCEEEE-CCChhHHHHH---H------HcCCCEEEeeCCCCccchhhHHHHHHHC------CCEEEEecccCCHH
Confidence 46789999886 4554565544 4 4689999876543211100000112111 112223233 499
Q ss_pred HHHHHhHhccC
Q 028644 184 ELVQKLEVGFL 194 (206)
Q Consensus 184 e~~~~l~~~~~ 194 (206)
++.+.|.+...
T Consensus 310 ~l~~~i~~ll~ 320 (348)
T TIGR01133 310 KLLEALLKLLL 320 (348)
T ss_pred HHHHHHHHHHc
Confidence 99988887663
No 18
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=92.49 E-value=1.1 Score=31.25 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=44.6
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHC-CCeEEEcCCccChhHHHHHHHHhcCCeEEEEeCC
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSK-KLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPK 79 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~-g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~ 79 (206)
++|.| +|++.-+|... .-..|-+.+++. ...||+||.+.|....+.+=|.+.|-.++-+-|+
T Consensus 4 ~rVli-~GgR~~~D~~~--i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~ad 66 (71)
T PF10686_consen 4 MRVLI-TGGRDWTDHEL--IWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVIRFPAD 66 (71)
T ss_pred CEEEE-EECCccccHHH--HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCcC
Confidence 45555 56676554433 445577777775 6688999995599999999999998777766554
No 19
>PRK13660 hypothetical protein; Provisional
Probab=92.39 E-value=5.5 Score=32.89 Aligned_cols=108 Identities=18% Similarity=0.088 Sum_probs=59.7
Q ss_pred HHHHHHHHHCCCe-EEEcCCccChhHHHHHHHHhcC-----CeEEEEeCCcccccccCC----------CCCceeecc--
Q 028644 36 LDLGQELVSKKLD-LVYGGGSVGLMGLVSHVVHRGG-----GHVLGIIPKTLMNKEITG----------ETVGEVKPV-- 97 (206)
Q Consensus 36 ~~lG~~lA~~g~~-lv~GGg~~GlM~a~~~ga~~~g-----G~viGv~P~~~~~~e~~~----------~~~~~~~~~-- 97 (206)
++|-+.+. .|+. +++||.- |+.--+++-|++.- -+.+-++|-......+.. ...+.+..+
T Consensus 33 ~~l~~~~e-~G~~wfi~ggal-G~d~wAaEvvl~LK~~yp~lkL~~~~PF~~q~~~W~e~~q~~y~~i~~~aD~v~~vs~ 110 (182)
T PRK13660 33 RKLIALLE-EGLEWVIISGQL-GVELWAAEVVLELKEEYPDLKLAVITPFEEHGENWNEANQEKLANILKQADFVKSISK 110 (182)
T ss_pred HHHHHHHH-CCCCEEEECCcc-hHHHHHHHHHHHHHhhCCCeEEEEEeCccchhhcCCHHHHHHHHHHHHhCCEEEEecC
Confidence 34444444 5774 5667764 99999999998852 345566674322221110 011222211
Q ss_pred ------CCHHHHHHHHHhhCCeeEEecCC---cCcHHHHHHHHHHHHhCCCCccEEEEe
Q 028644 98 ------ADMHQRKAEMARNSDCFIALPGG---YGTLEELLEVITWAQLGIHDKPVGLIN 147 (206)
Q Consensus 98 ------~~~~~Rk~~m~~~sDa~IvlpGG---~GTL~El~~~~~~~~~g~~~kPiill~ 147 (206)
.-|..|++.|+++||.+|++=-| .||---+- .+..+-..++.||.+++
T Consensus 111 ~~y~~p~q~~~rn~fmv~~sd~~i~~YD~e~~Ggt~y~~~--~A~k~~~~~~y~i~~I~ 167 (182)
T PRK13660 111 RPYESPAQFRQYNQFMLEHTDGALLVYDEENEGSPKYFYE--AAKKKQEKEDYPLDLIT 167 (182)
T ss_pred CCCCChHHHHHHHHHHHHccCeEEEEEcCCCCCChHHHHH--HHHHhhhccCceEEEeC
Confidence 12789999999999998887322 23332111 11112123578888874
No 20
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=92.35 E-value=0.6 Score=42.33 Aligned_cols=82 Identities=17% Similarity=0.110 Sum_probs=47.6
Q ss_pred ccCCHHHHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccc---hhHHHHHHHHHHcCCCCccc
Q 028644 96 PVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYY---NSLLNFIDKAVDDGFISPSQ 172 (206)
Q Consensus 96 ~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w---~~l~~~l~~~~~~gfi~~~~ 172 (206)
.+..|.......+..||.+|.=+ |..|+.|++ ..++|.|++-. .++ +...+ .+.+.+.|.-
T Consensus 238 ~v~~f~~dm~~~~~~ADLvIsRa-Ga~Ti~E~~---------a~g~P~IliP~-p~~~~~~Q~~N-A~~l~~~gaa---- 301 (357)
T COG0707 238 RVLPFIDDMAALLAAADLVISRA-GALTIAELL---------ALGVPAILVPY-PPGADGHQEYN-AKFLEKAGAA---- 301 (357)
T ss_pred EEeeHHhhHHHHHHhccEEEeCC-cccHHHHHH---------HhCCCEEEeCC-CCCccchHHHH-HHHHHhCCCE----
Confidence 34444444556778899877665 568999987 35799999854 244 22222 1234454432
Q ss_pred cCcEEEcC--CHHHHHHHhHhccCC
Q 028644 173 RSILVSAP--NAKELVQKLEVGFLF 195 (206)
Q Consensus 173 ~~~i~~~~--~~ee~~~~l~~~~~~ 195 (206)
.+.--+ +++++.+.|.+...+
T Consensus 302 --~~i~~~~lt~~~l~~~i~~l~~~ 324 (357)
T COG0707 302 --LVIRQSELTPEKLAELILRLLSN 324 (357)
T ss_pred --EEeccccCCHHHHHHHHHHHhcC
Confidence 121111 366888877776543
No 21
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=91.53 E-value=3.1 Score=32.81 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=48.4
Q ss_pred HHHHHHHHhhCCeeEEecCC-cCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEc
Q 028644 101 HQRKAEMARNSDCFIALPGG-YGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 179 (206)
Q Consensus 101 ~~Rk~~m~~~sDa~IvlpGG-~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~ 179 (206)
..|-+.+++.||.+|+.-|- +=-.+-.|.+=... ..+||+|++.....--+|.+. +. ....++
T Consensus 66 aiRT~~li~~aDvvVvrFGekYKQWNaAfDAg~aa---AlgKplI~lh~~~~~HpLKEv-da------------aA~ava 129 (144)
T TIGR03646 66 NIRTRKLIEKADVVIALFGEKYKQWNAAFDAGYAA---ALGKPLIILRPEELIHPLKEV-DN------------KAQAVV 129 (144)
T ss_pred hHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHH---HcCCCeEEecchhccccHHHH-hH------------HHHHHh
Confidence 57899999999999998775 22222222221111 258999999876565666552 11 124568
Q ss_pred CCHHHHHHHhH
Q 028644 180 PNAKELVQKLE 190 (206)
Q Consensus 180 ~~~ee~~~~l~ 190 (206)
++|+++++.|.
T Consensus 130 etp~Qvv~iL~ 140 (144)
T TIGR03646 130 ETPEQAIETLK 140 (144)
T ss_pred cCHHHHHHHHH
Confidence 99999999874
No 22
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=90.72 E-value=8.5 Score=34.08 Aligned_cols=132 Identities=16% Similarity=0.158 Sum_probs=72.5
Q ss_pred cCCCceEEEEcCCCCCCChHHHHHHHHHHHHH----HHCCCeEEEcCCccChhHHHHHHHHhcCCe-EEEE-eCCccccc
Q 028644 11 MSRFKRVCVFCGSSTGKRNCYRDAALDLGQEL----VSKKLDLVYGGGSVGLMGLVSHVVHRGGGH-VLGI-IPKTLMNK 84 (206)
Q Consensus 11 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~l----A~~g~~lv~GGg~~GlM~a~~~ga~~~gG~-viGv-~P~~~~~~ 84 (206)
....++|+|+-|.....-+-..+.|.++...| .+.|+.++---.. =-...+.. -+.++-. +-|+ -|+.
T Consensus 158 p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSR-RTp~~~~s-~l~~~l~s~~~i~w~~~---- 231 (329)
T COG3660 158 PLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSR-RTPDTVKS-ILKNNLNSSPGIVWNNE---- 231 (329)
T ss_pred CCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeec-CCcHHHHH-HHHhccccCceeEeCCC----
Confidence 34456788887766553222234445554444 4466666544443 33333322 2232221 1222 2221
Q ss_pred ccCCCCCceeeccCCHHHHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccch-hHHHHHHHHH
Q 028644 85 EITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYN-SLLNFIDKAV 163 (206)
Q Consensus 85 e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~-~l~~~l~~~~ 163 (206)
+...|+|- -|+..||++|+---.+.-..|.+ ..+|||.++-.+++-. ...-|+++++
T Consensus 232 d~g~NPY~-------------~~La~Adyii~TaDSinM~sEAa---------sTgkPv~~~~~~~~~s~K~r~Fi~~L~ 289 (329)
T COG3660 232 DTGYNPYI-------------DMLAAADYIISTADSINMCSEAA---------STGKPVFILEPPNFNSLKFRIFIEQLV 289 (329)
T ss_pred CCCCCchH-------------HHHhhcceEEEecchhhhhHHHh---------ccCCCeEEEecCCcchHHHHHHHHHHH
Confidence 12233331 26789999999888777766654 4689999998877733 4445667888
Q ss_pred HcCCCCc
Q 028644 164 DDGFISP 170 (206)
Q Consensus 164 ~~gfi~~ 170 (206)
+++....
T Consensus 290 eq~~AR~ 296 (329)
T COG3660 290 EQKIARP 296 (329)
T ss_pred Hhhhccc
Confidence 7665443
No 23
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=90.29 E-value=11 Score=32.50 Aligned_cols=77 Identities=18% Similarity=0.143 Sum_probs=41.3
Q ss_pred HHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCcc-chhHHHHHHHHHHcCCCCccccCcEEEcC
Q 028644 102 QRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGY-YNSLLNFIDKAVDDGFISPSQRSILVSAP 180 (206)
Q Consensus 102 ~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~-w~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 180 (206)
..-..++..||++|. ++|..|+. |++ ..++|++.....+. ++.-....+.+.+.| ...+.-.+
T Consensus 244 ~~~~~~l~~ad~~v~-~sg~~t~~---Eam------~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g------~g~~v~~~ 307 (350)
T cd03785 244 DDMAAAYAAADLVIS-RAGASTVA---ELA------ALGLPAILIPLPYAADDHQTANARALVKAG------AAVLIPQE 307 (350)
T ss_pred hhHHHHHHhcCEEEE-CCCHhHHH---HHH------HhCCCEEEeecCCCCCCcHHHhHHHHHhCC------CEEEEecC
Confidence 344567789999885 55556644 445 36899998754321 111000012222222 11222223
Q ss_pred --CHHHHHHHhHhccC
Q 028644 181 --NAKELVQKLEVGFL 194 (206)
Q Consensus 181 --~~ee~~~~l~~~~~ 194 (206)
|++++.+.|.++..
T Consensus 308 ~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 308 ELTPERLAAALLELLS 323 (350)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 89999988887653
No 24
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=89.76 E-value=9.3 Score=34.19 Aligned_cols=72 Identities=26% Similarity=0.299 Sum_probs=42.8
Q ss_pred HHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 028644 103 RKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNA 182 (206)
Q Consensus 103 Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ 182 (206)
.-..++..||++|.-+| .+|+.|. + ..++|+++.+.-. ....-+ .+.+.+.|. -..+.|+
T Consensus 275 ~~~~l~~aaDv~V~~~g-~~ti~EA---m------a~g~PvI~~~~~p-gqe~gn-~~~i~~~g~--------g~~~~~~ 334 (382)
T PLN02605 275 NMEEWMGACDCIITKAG-PGTIAEA---L------IRGLPIILNGYIP-GQEEGN-VPYVVDNGF--------GAFSESP 334 (382)
T ss_pred cHHHHHHhCCEEEECCC-cchHHHH---H------HcCCCEEEecCCC-ccchhh-HHHHHhCCc--------eeecCCH
Confidence 34457799999997555 4786554 4 3689999986311 011111 122333332 1235899
Q ss_pred HHHHHHhHhccC
Q 028644 183 KELVQKLEVGFL 194 (206)
Q Consensus 183 ee~~~~l~~~~~ 194 (206)
+++.+.|.+...
T Consensus 335 ~~la~~i~~ll~ 346 (382)
T PLN02605 335 KEIARIVAEWFG 346 (382)
T ss_pred HHHHHHHHHHHc
Confidence 999988887653
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=88.83 E-value=8.8 Score=34.14 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=42.7
Q ss_pred HHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHH
Q 028644 106 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKEL 185 (206)
Q Consensus 106 ~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~ 185 (206)
.++..+|+|| -.||.||+.|.. .+++|++++-. +.|.. ...+.+.+.|.-..-... .-+++++
T Consensus 300 ~ll~~~d~~I-~hgG~~t~~eal---------~~GvP~v~~P~--~~dQ~-~~a~~~~~~G~g~~l~~~----~~~~~~l 362 (401)
T cd03784 300 WLLPRCAAVV-HHGGAGTTAAAL---------RAGVPQLVVPF--FGDQP-FWAARVAELGAGPALDPR----ELTAERL 362 (401)
T ss_pred HHhhhhheee-ecCCchhHHHHH---------HcCCCEEeeCC--CCCcH-HHHHHHHHCCCCCCCCcc----cCCHHHH
Confidence 4567788887 677799988775 47899999843 23322 223456665532110001 1267777
Q ss_pred HHHhHhccC
Q 028644 186 VQKLEVGFL 194 (206)
Q Consensus 186 ~~~l~~~~~ 194 (206)
.+.+++...
T Consensus 363 ~~al~~~l~ 371 (401)
T cd03784 363 AAALRRLLD 371 (401)
T ss_pred HHHHHHHhC
Confidence 777766543
No 26
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=88.51 E-value=6.4 Score=34.73 Aligned_cols=31 Identities=29% Similarity=0.300 Sum_probs=22.7
Q ss_pred HHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEE
Q 028644 105 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLI 146 (206)
Q Consensus 105 ~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill 146 (206)
..++..||.+|. ++|..|+ |.. ..++|+++.
T Consensus 256 ~~~~~~aDl~v~-~sG~~~l-Ea~---------a~G~PvI~~ 286 (380)
T PRK00025 256 REAMAAADAALA-ASGTVTL-ELA---------LLKVPMVVG 286 (380)
T ss_pred HHHHHhCCEEEE-CccHHHH-HHH---------HhCCCEEEE
Confidence 456789998887 6677776 553 258999875
No 27
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=88.32 E-value=1.1 Score=35.16 Aligned_cols=34 Identities=32% Similarity=0.470 Sum_probs=22.6
Q ss_pred HHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEec
Q 028644 105 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 148 (206)
Q Consensus 105 ~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~ 148 (206)
..+++.|| +|+--||.||+.|+. ..++|.|++-.
T Consensus 67 ~~~m~~aD-lvIs~aG~~Ti~E~l---------~~g~P~I~ip~ 100 (167)
T PF04101_consen 67 AELMAAAD-LVISHAGAGTIAEAL---------ALGKPAIVIPL 100 (167)
T ss_dssp HHHHHHHS-EEEECS-CHHHHHHH---------HCT--EEEE--
T ss_pred HHHHHHcC-EEEeCCCccHHHHHH---------HcCCCeeccCC
Confidence 44668899 677789999998875 36899988743
No 28
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=87.92 E-value=7.8 Score=34.59 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=40.2
Q ss_pred HHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEE-EcCCHHH
Q 028644 106 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV-SAPNAKE 184 (206)
Q Consensus 106 ~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~-~~~~~ee 184 (206)
.++..||++| -.||.||+.|.. .+++|++++-.. ..+.. ..+.+.+.|.-. .+. -.-++++
T Consensus 287 ~ll~~~~~~I-~hgG~~t~~Eal---------~~G~P~v~~p~~-~dq~~--~a~~l~~~g~g~-----~l~~~~~~~~~ 348 (392)
T TIGR01426 287 EILKKADAFI-THGGMNSTMEAL---------FNGVPMVAVPQG-ADQPM--TARRIAELGLGR-----HLPPEEVTAEK 348 (392)
T ss_pred HHHhhCCEEE-ECCCchHHHHHH---------HhCCCEEecCCc-ccHHH--HHHHHHHCCCEE-----EeccccCCHHH
Confidence 3557888554 689999987765 468999987532 22222 224444444210 011 1225677
Q ss_pred HHHHhHhcc
Q 028644 185 LVQKLEVGF 193 (206)
Q Consensus 185 ~~~~l~~~~ 193 (206)
+.+.|++..
T Consensus 349 l~~ai~~~l 357 (392)
T TIGR01426 349 LREAVLAVL 357 (392)
T ss_pred HHHHHHHHh
Confidence 777776654
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=87.83 E-value=15 Score=32.85 Aligned_cols=73 Identities=21% Similarity=0.289 Sum_probs=39.6
Q ss_pred HHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCcc---chhHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 028644 106 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGY---YNSLLNFIDKAVDDGFISPSQRSILVSAPNA 182 (206)
Q Consensus 106 ~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~---w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ 182 (206)
.++..||++|. -||.+|+.|+. ..++|.+++-.... .+...+ .+.+.+.|....-. .-.-++
T Consensus 248 ~~~~~adlvIs-r~G~~t~~E~~---------~~g~P~I~iP~~~~~~~~~Q~~N-a~~l~~~g~~~~l~----~~~~~~ 312 (352)
T PRK12446 248 DILAITDFVIS-RAGSNAIFEFL---------TLQKPMLLIPLSKFASRGDQILN-AESFERQGYASVLY----EEDVTV 312 (352)
T ss_pred HHHHhCCEEEE-CCChhHHHHHH---------HcCCCEEEEcCCCCCCCchHHHH-HHHHHHCCCEEEcc----hhcCCH
Confidence 36789995554 56677888775 46899999832100 122222 23455555331100 111156
Q ss_pred HHHHHHhHhcc
Q 028644 183 KELVQKLEVGF 193 (206)
Q Consensus 183 ee~~~~l~~~~ 193 (206)
+++.+.+.+..
T Consensus 313 ~~l~~~l~~ll 323 (352)
T PRK12446 313 NSLIKHVEELS 323 (352)
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 30
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=86.87 E-value=1.4 Score=38.90 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHCCC-eEEEcCCccChhHHHHHHHHhcCCeEEEEeCCc
Q 028644 34 AALDLGQELVSKKL-DLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKT 80 (206)
Q Consensus 34 ~A~~lG~~lA~~g~-~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~ 80 (206)
.|.++.+.++..++ .|+.+||. |...+++.|....+...+||+|..
T Consensus 46 ~a~~~a~~a~~~~~D~via~GGD-GTv~evingl~~~~~~~LgilP~G 92 (301)
T COG1597 46 DAIEIAREAAVEGYDTVIAAGGD-GTVNEVANGLAGTDDPPLGILPGG 92 (301)
T ss_pred cHHHHHHHHHhcCCCEEEEecCc-chHHHHHHHHhcCCCCceEEecCC
Confidence 45667777777766 56778887 999999999999888889999964
No 31
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=86.63 E-value=15 Score=33.20 Aligned_cols=76 Identities=16% Similarity=0.090 Sum_probs=41.5
Q ss_pred HHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCC-------cc-ccCcEEE
Q 028644 107 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFIS-------PS-QRSILVS 178 (206)
Q Consensus 107 m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~-------~~-~~~~i~~ 178 (206)
.+..||++|.-. |..|+ |++ ..++|+|+...-..+..++. ++++.-.++. .. ..+.+.-
T Consensus 264 ~l~aADl~V~~S-Gt~tl-Ea~---------a~G~P~Vv~yk~~pl~~~~~--~~~~~~~~~~~~nil~~~~~~pel~q~ 330 (385)
T TIGR00215 264 AMFAADAALLAS-GTAAL-EAA---------LIKTPMVVGYRMKPLTFLIA--RRLVKTDYISLPNILANRLLVPELLQE 330 (385)
T ss_pred HHHhCCEEeecC-CHHHH-HHH---------HcCCCEEEEEcCCHHHHHHH--HHHHcCCeeeccHHhcCCccchhhcCC
Confidence 668899887766 56677 664 36899888643222322221 2222222221 11 1223334
Q ss_pred cCCHHHHHHHhHhccCC
Q 028644 179 APNAKELVQKLEVGFLF 195 (206)
Q Consensus 179 ~~~~ee~~~~l~~~~~~ 195 (206)
.-|++.+.+.+.++...
T Consensus 331 ~~~~~~l~~~~~~ll~~ 347 (385)
T TIGR00215 331 ECTPHPLAIALLLLLEN 347 (385)
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 45788888888777643
No 32
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=84.49 E-value=12 Score=32.68 Aligned_cols=54 Identities=28% Similarity=0.332 Sum_probs=35.4
Q ss_pred HHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCC
Q 028644 103 RKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGF 167 (206)
Q Consensus 103 Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gf 167 (206)
.-.-++..||++|.= ||.+|+.|.. .+++|++++...+.++...+ .+.+.+.|.
T Consensus 240 ~~~~~l~~ad~vI~~-~G~~t~~Ea~---------~~g~P~l~ip~~~~~eQ~~n-a~~l~~~g~ 293 (321)
T TIGR00661 240 NFKELIKNAELVITH-GGFSLISEAL---------SLGKPLIVIPDLGQFEQGNN-AVKLEDLGC 293 (321)
T ss_pred HHHHHHHhCCEEEEC-CChHHHHHHH---------HcCCCEEEEcCCCcccHHHH-HHHHHHCCC
Confidence 344566888888775 6778877653 47899999876666665443 234555553
No 33
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=82.35 E-value=13 Score=32.12 Aligned_cols=36 Identities=25% Similarity=0.189 Sum_probs=26.9
Q ss_pred HHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEec
Q 028644 102 QRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 148 (206)
Q Consensus 102 ~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~ 148 (206)
..-.-++..||.+|. +|| +|+.|+. ..++|++++-.
T Consensus 233 ~~m~~lm~~aDl~Is-~~G-~T~~E~~---------a~g~P~i~i~~ 268 (279)
T TIGR03590 233 ENMAELMNEADLAIG-AAG-STSWERC---------CLGLPSLAICL 268 (279)
T ss_pred HHHHHHHHHCCEEEE-CCc-hHHHHHH---------HcCCCEEEEEe
Confidence 344557789999999 566 8987775 35799998854
No 34
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=81.93 E-value=4 Score=32.45 Aligned_cols=45 Identities=11% Similarity=0.065 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEE
Q 028644 31 YRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 31 ~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 76 (206)
+-.-|.-+.+.|+..|+.++++|.. --.+.+++.|.+....+|||
T Consensus 25 Hd~gakvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgv 69 (143)
T COG2185 25 HDRGAKVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGV 69 (143)
T ss_pred cccchHHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEE
Confidence 3356678899999999999999997 78899999999999999999
No 35
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=80.67 E-value=24 Score=30.20 Aligned_cols=125 Identities=22% Similarity=0.291 Sum_probs=61.8
Q ss_pred EEEcCCccChhHHH---HHHHHhcC-CeEEEEeCCccccc-ccCCCCCceeeccC-CH--HHHHHHHHhhCCeeEEecCC
Q 028644 49 LVYGGGSVGLMGLV---SHVVHRGG-GHVLGIIPKTLMNK-EITGETVGEVKPVA-DM--HQRKAEMARNSDCFIALPGG 120 (206)
Q Consensus 49 lv~GGg~~GlM~a~---~~ga~~~g-G~viGv~P~~~~~~-e~~~~~~~~~~~~~-~~--~~Rk~~m~~~sDa~IvlpGG 120 (206)
+|-||.. +..+|+ +++|+..| |.|.-+.|....+. ....+ +.+..+ .. ...-....+..|++++=||
T Consensus 2 lvigGS~-~~~GA~~Laa~aAlr~GaGlV~~~~~~~~~~~~~~~~P---e~m~~~~~~~~~~~~~~~~~~~~av~iGPG- 76 (242)
T PF01256_consen 2 LVIGGSE-GYPGAAILAARAALRSGAGLVTLATPESIAPVIASYSP---EAMVSPLPSDEDVEILELLEKADAVVIGPG- 76 (242)
T ss_dssp EEEE-BT-SSHHHHHHHHHHHHHTT-SEEEEEECGCCHHHHHHHTT---TSEEEETTHCCHHHHHHHHCH-SEEEE-TT-
T ss_pred EEEECCC-CCCCHHHHHHHHHHHHCCCcEEEEEcHHHHHHHHhCCc---eeEEecccchhhhhhHhhhccCCEEEeecC-
Confidence 5667765 666665 66777776 67766666543211 00111 222111 11 1122334577899888776
Q ss_pred cCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHhHhc
Q 028644 121 YGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEVG 192 (206)
Q Consensus 121 ~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~~~ 192 (206)
.|+-++..+.+... -...+| ++++-|+.| .+.+.. ......++++..+-|+-+.+...
T Consensus 77 lg~~~~~~~~~~~~--~~~~~p-~VlDADaL~--------~l~~~~---~~~~~~~IlTPH~gE~~rL~~~~ 134 (242)
T PF01256_consen 77 LGRDEETEELLEEL--LESDKP-LVLDADALN--------LLAENP---KKRNAPVILTPHPGEFARLLGKS 134 (242)
T ss_dssp -SSSHHHHHHHHHH--HHHCST-EEEECHHHH--------CHHHCC---CCSSSCEEEE-BHHHHHHHHTTT
T ss_pred CCCchhhHHHHHHH--Hhhcce-EEEehHHHH--------HHHhcc---ccCCCCEEECCCHHHHHHHhCCc
Confidence 45555544333221 124678 456765432 122211 33455678889998888866543
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=79.25 E-value=7.5 Score=34.45 Aligned_cols=73 Identities=25% Similarity=0.198 Sum_probs=41.7
Q ss_pred HHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCC
Q 028644 102 QRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 181 (206)
Q Consensus 102 ~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~ 181 (206)
..-..++..||++|.-+|| .|+.| ++ ..++|+++.+..+..+.- -.+.+.+.|+ .....|
T Consensus 265 ~~~~~l~~~aD~~v~~~gg-~t~~E---A~------a~g~PvI~~~~~~g~~~~--n~~~~~~~G~--------~~~~~~ 324 (380)
T PRK13609 265 ENIDELFRVTSCMITKPGG-ITLSE---AA------ALGVPVILYKPVPGQEKE--NAMYFERKGA--------AVVIRD 324 (380)
T ss_pred hhHHHHHHhccEEEeCCCc-hHHHH---HH------HhCCCEEECCCCCCcchH--HHHHHHhCCc--------EEEECC
Confidence 3444577899988865554 45544 44 368999887632222211 0112233343 344578
Q ss_pred HHHHHHHhHhccC
Q 028644 182 AKELVQKLEVGFL 194 (206)
Q Consensus 182 ~ee~~~~l~~~~~ 194 (206)
++++.+.|.+...
T Consensus 325 ~~~l~~~i~~ll~ 337 (380)
T PRK13609 325 DEEVFAKTEALLQ 337 (380)
T ss_pred HHHHHHHHHHHHC
Confidence 8888888876653
No 37
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=79.14 E-value=4.6 Score=36.41 Aligned_cols=72 Identities=22% Similarity=0.192 Sum_probs=42.4
Q ss_pred HHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCC
Q 028644 102 QRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 181 (206)
Q Consensus 102 ~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~ 181 (206)
.+-..++..||++|.-|||. |+.|. + ..++|+++.+..+- ++..+- ..+.+.|+ -...+|
T Consensus 265 ~~~~~~~~~aDl~I~k~gg~-tl~EA---~------a~G~PvI~~~~~pg-qe~~N~-~~~~~~G~--------g~~~~~ 324 (391)
T PRK13608 265 KHMNEWMASSQLMITKPGGI-TISEG---L------ARCIPMIFLNPAPG-QELENA-LYFEEKGF--------GKIADT 324 (391)
T ss_pred chHHHHHHhhhEEEeCCchH-HHHHH---H------HhCCCEEECCCCCC-cchhHH-HHHHhCCc--------EEEeCC
Confidence 34556789999999877764 65544 4 36899999864221 111110 11223332 234678
Q ss_pred HHHHHHHhHhcc
Q 028644 182 AKELVQKLEVGF 193 (206)
Q Consensus 182 ~ee~~~~l~~~~ 193 (206)
++++.+.|.+..
T Consensus 325 ~~~l~~~i~~ll 336 (391)
T PRK13608 325 PEEAIKIVASLT 336 (391)
T ss_pred HHHHHHHHHHHh
Confidence 888877777664
No 38
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=77.74 E-value=18 Score=31.01 Aligned_cols=44 Identities=20% Similarity=0.324 Sum_probs=24.9
Q ss_pred HHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCc
Q 028644 103 RKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDG 150 (206)
Q Consensus 103 Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g 150 (206)
+-..++..+|++++ .+|.++-+.+.++..... ..++|+ +++.+|
T Consensus 85 ~~~~~~~~~davvi-g~Gl~~~~~~~~l~~~~~--~~~~pv-VlDa~g 128 (272)
T TIGR00196 85 EDEELLERYDVVVI-GPGLGQDPSFKKAVEEVL--ELDKPV-VLDADA 128 (272)
T ss_pred HHHhhhccCCEEEE-cCCCCCCHHHHHHHHHHH--hcCCCE-EEEhHH
Confidence 33445566776666 666888665443333222 357886 456654
No 39
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=77.39 E-value=18 Score=29.61 Aligned_cols=53 Identities=25% Similarity=0.207 Sum_probs=37.6
Q ss_pred HHHHHHHHhhCCeeEEecCC------cCcHHHHHHHHHHHHhCCCCccEEEEecCc--cchhHHHHH
Q 028644 101 HQRKAEMARNSDCFIALPGG------YGTLEELLEVITWAQLGIHDKPVGLINVDG--YYNSLLNFI 159 (206)
Q Consensus 101 ~~Rk~~m~~~sDa~IvlpGG------~GTL~El~~~~~~~~~g~~~kPiill~~~g--~w~~l~~~l 159 (206)
.+=..-++++||++|+.-=+ .||.-|+-.+++ .+||++.+..+. +...+...+
T Consensus 59 ~e~d~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~A------lgKPv~~~~~d~~~~~~r~~~~~ 119 (172)
T COG3613 59 YEADIKLIDQADIVLANLDPFRPDPDSGTAFELGYAIA------LGKPVYAYRKDAANYASRLNAHL 119 (172)
T ss_pred HHHHHHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHH------cCCceEEEeecccchhhHHHHhH
Confidence 33455578999999888544 799999999885 589999887542 344444443
No 40
>PRK11914 diacylglycerol kinase; Reviewed
Probab=77.04 E-value=34 Score=29.74 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=18.5
Q ss_pred cCCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe
Q 028644 11 MSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLD 48 (206)
Q Consensus 11 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~ 48 (206)
+..|+++.++--...+... ..+...++-+.|.+.|+.
T Consensus 5 ~~~~~~~~iI~NP~sG~g~-~~~~~~~~~~~l~~~g~~ 41 (306)
T PRK11914 5 RHEIGKVTVLTNPLSGHGA-APHAAERAIARLHHRGVD 41 (306)
T ss_pred cCCCceEEEEECCCCCCCc-HHHHHHHHHHHHHHcCCe
Confidence 4556677766544433322 223344555566666543
No 41
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=76.61 E-value=59 Score=29.46 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=41.9
Q ss_pred CCeeE-EecCCcCcHHHHHHHHHHHHhC-CCCccEEEEecCc-cchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHH
Q 028644 111 SDCFI-ALPGGYGTLEELLEVITWAQLG-IHDKPVGLINVDG-YYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQ 187 (206)
Q Consensus 111 sDa~I-vlpGG~GTL~El~~~~~~~~~g-~~~kPiill~~~g-~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~ 187 (206)
.|+++ .++|++...+++.+++.-..-. ..+||+++. ..| ..+...+ .+.+.|+ .+.+.+|++++++
T Consensus 311 vd~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~~-~~g~~~~~~~~---~L~~~Gi-------~ip~f~~pe~A~~ 379 (388)
T PRK00696 311 VKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVR-LEGTNVELGKK---ILAESGL-------NIIAADTLDDAAQ 379 (388)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHH---HHHHCCC-------CceecCCHHHHHH
Confidence 46655 4567777777787777543322 267999554 333 2222222 2333331 2567899999999
Q ss_pred HhHhc
Q 028644 188 KLEVG 192 (206)
Q Consensus 188 ~l~~~ 192 (206)
.+.+.
T Consensus 380 al~~~ 384 (388)
T PRK00696 380 KAVEA 384 (388)
T ss_pred HHHHH
Confidence 88753
No 42
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=74.98 E-value=68 Score=29.41 Aligned_cols=128 Identities=18% Similarity=0.143 Sum_probs=67.3
Q ss_pred HHHCCCeEEEcCCccC----hhHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceeeccCCHHHHHHHHHhhCCeeEEe
Q 028644 42 LVSKKLDLVYGGGSVG----LMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIAL 117 (206)
Q Consensus 42 lA~~g~~lv~GGg~~G----lM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~Ivl 117 (206)
.+.+....++=|.. + +-+.+.+...+.+.++|=-..+ ... .. .+-....++....+ ...++..||+|| -
T Consensus 234 ~~d~~~vyvslGt~-~~~~~l~~~~~~a~~~l~~~vi~~~~~-~~~-~~-~~~p~n~~v~~~~p--~~~~l~~ad~vI-~ 306 (406)
T COG1819 234 PADRPIVYVSLGTV-GNAVELLAIVLEALADLDVRVIVSLGG-ARD-TL-VNVPDNVIVADYVP--QLELLPRADAVI-H 306 (406)
T ss_pred cCCCCeEEEEcCCc-ccHHHHHHHHHHHHhcCCcEEEEeccc-ccc-cc-ccCCCceEEecCCC--HHHHhhhcCEEE-e
Confidence 33455555655554 6 4456666666777777665543 111 11 11111223333332 233788898875 5
Q ss_pred cCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEE-cCCHHHHHHHhHhcc
Q 028644 118 PGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS-APNAKELVQKLEVGF 193 (206)
Q Consensus 118 pGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~-~~~~ee~~~~l~~~~ 193 (206)
+||.||..|.. ..++|++++-. .||.... .+...+.|.= ..+.+ ..+++.+.+.+.+..
T Consensus 307 hGG~gtt~eaL---------~~gvP~vv~P~--~~DQ~~n-A~rve~~G~G-----~~l~~~~l~~~~l~~av~~vL 366 (406)
T COG1819 307 HGGAGTTSEAL---------YAGVPLVVIPD--GADQPLN-AERVEELGAG-----IALPFEELTEERLRAAVNEVL 366 (406)
T ss_pred cCCcchHHHHH---------HcCCCEEEecC--CcchhHH-HHHHHHcCCc-----eecCcccCCHHHHHHHHHHHh
Confidence 89999988764 47899999853 2555332 1333333311 11111 345556666555544
No 43
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=74.38 E-value=66 Score=28.95 Aligned_cols=81 Identities=14% Similarity=0.053 Sum_probs=46.5
Q ss_pred eeccCCHHHHHHHHHhhCCeeEEec---CCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCc
Q 028644 94 VKPVADMHQRKAEMARNSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISP 170 (206)
Q Consensus 94 ~~~~~~~~~Rk~~m~~~sDa~Ivlp---GG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~ 170 (206)
++..+++. .-..++..||.+++.| .+.|.- +.|+++ .++||+.-...+-+.++. +.+.+.|+
T Consensus 304 v~l~~~~~-el~~~y~~aDi~~v~~S~~e~~g~~--~lEAma------~G~PVI~g~~~~~~~e~~---~~~~~~g~--- 368 (425)
T PRK05749 304 VLLGDTMG-ELGLLYAIADIAFVGGSLVKRGGHN--PLEPAA------FGVPVISGPHTFNFKEIF---ERLLQAGA--- 368 (425)
T ss_pred EEEEecHH-HHHHHHHhCCEEEECCCcCCCCCCC--HHHHHH------hCCCEEECCCccCHHHHH---HHHHHCCC---
Confidence 44445444 3445678999877642 123432 567773 689998743212233333 23333343
Q ss_pred cccCcEEEcCCHHHHHHHhHhccC
Q 028644 171 SQRSILVSAPNAKELVQKLEVGFL 194 (206)
Q Consensus 171 ~~~~~i~~~~~~ee~~~~l~~~~~ 194 (206)
++..+|++++.+.|.+...
T Consensus 369 -----~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 369 -----AIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred -----eEEECCHHHHHHHHHHHhc
Confidence 4557889999888877654
No 44
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=73.75 E-value=6.6 Score=31.11 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=27.9
Q ss_pred cCCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 028644 11 MSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (206)
Q Consensus 11 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (206)
-.+-++|+|+|-|..+..+.| .+.+.|-++||.|+
T Consensus 13 L~~~K~IAvVG~S~~P~r~sy-----~V~kyL~~~GY~Vi 47 (140)
T COG1832 13 LKSAKTIAVVGASDKPDRPSY-----RVAKYLQQKGYRVI 47 (140)
T ss_pred HHhCceEEEEecCCCCCccHH-----HHHHHHHHCCCEEE
Confidence 344579999988887666666 58899999999987
No 45
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=72.94 E-value=17 Score=31.69 Aligned_cols=79 Identities=22% Similarity=0.233 Sum_probs=44.3
Q ss_pred CHHHHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCc--cchhHHHHHHHHHHcCCCCccccCcE
Q 028644 99 DMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDG--YYNSLLNFIDKAVDDGFISPSQRSIL 176 (206)
Q Consensus 99 ~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g--~w~~l~~~l~~~~~~gfi~~~~~~~i 176 (206)
++...-..++..||++|. ++|.+|+-|. + ..++|++.....+ ..+.... .+.+.+.| ...+
T Consensus 241 g~~~~~~~~~~~~d~~i~-~~g~~~~~Ea---~------~~g~Pvv~~~~~~~~~~~~~~~-~~~i~~~~------~g~~ 303 (357)
T PRK00726 241 PFIDDMAAAYAAADLVIC-RAGASTVAEL---A------AAGLPAILVPLPHAADDHQTAN-ARALVDAG------AALL 303 (357)
T ss_pred ehHhhHHHHHHhCCEEEE-CCCHHHHHHH---H------HhCCCEEEecCCCCCcCcHHHH-HHHHHHCC------CEEE
Confidence 333344567789999986 5556665544 4 3689999875422 1121111 12333333 1223
Q ss_pred EEcCC--HHHHHHHhHhccC
Q 028644 177 VSAPN--AKELVQKLEVGFL 194 (206)
Q Consensus 177 ~~~~~--~ee~~~~l~~~~~ 194 (206)
.-.+| ++++.+.|++...
T Consensus 304 ~~~~~~~~~~l~~~i~~ll~ 323 (357)
T PRK00726 304 IPQSDLTPEKLAEKLLELLS 323 (357)
T ss_pred EEcccCCHHHHHHHHHHHHc
Confidence 33444 8999998887653
No 46
>PRK00861 putative lipid kinase; Reviewed
Probab=72.26 E-value=8.2 Score=33.53 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=31.5
Q ss_pred HHHHHHHHHCCC-eEEEcCCccChhHHHHHHHHhcCCeEEEEeCCc
Q 028644 36 LDLGQELVSKKL-DLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKT 80 (206)
Q Consensus 36 ~~lG~~lA~~g~-~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~ 80 (206)
.++.+..++.++ .||..||. |-..++..+.... +..+||+|..
T Consensus 47 ~~~a~~~~~~~~d~vv~~GGD-GTl~evv~~l~~~-~~~lgviP~G 90 (300)
T PRK00861 47 DQLAQEAIERGAELIIASGGD-GTLSAVAGALIGT-DIPLGIIPRG 90 (300)
T ss_pred HHHHHHHHhcCCCEEEEECCh-HHHHHHHHHHhcC-CCcEEEEcCC
Confidence 445555556654 56778887 9999999998765 4679999964
No 47
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=71.80 E-value=27 Score=27.25 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=36.1
Q ss_pred CCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhH--------------HHHHH-HHHHcCCCCccccCc
Q 028644 111 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSL--------------LNFID-KAVDDGFISPSQRSI 175 (206)
Q Consensus 111 sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l--------------~~~l~-~~~~~gfi~~~~~~~ 175 (206)
.+++++.--|++--.+++++..-.. . .|||+++..+ -++.= .+..+ -+.+.|
T Consensus 55 t~~I~ly~E~~~d~~~f~~~~~~a~--~-~KPVv~lk~G-rt~~g~~aa~sHTgslag~~~~~~a~~~~aG--------- 121 (138)
T PF13607_consen 55 TRVIVLYLEGIGDGRRFLEAARRAA--R-RKPVVVLKAG-RTEAGARAAASHTGSLAGDDAVYDAALRQAG--------- 121 (138)
T ss_dssp --EEEEEES--S-HHHHHHHHHHHC--C-CS-EEEEE----------------------HHHHHHHHHHCT---------
T ss_pred CCEEEEEccCCCCHHHHHHHHHHHh--c-CCCEEEEeCC-CchhhhhhhhccCCcccCcHHHHHHHHHHcC---------
Confidence 5677777888998899888875332 3 3999999764 21110 00111 122333
Q ss_pred EEEcCCHHHHHHHhH
Q 028644 176 LVSAPNAKELVQKLE 190 (206)
Q Consensus 176 i~~~~~~ee~~~~l~ 190 (206)
++.++|++|+++..+
T Consensus 122 v~~v~~~~el~~~~~ 136 (138)
T PF13607_consen 122 VVRVDDLDELLDAAK 136 (138)
T ss_dssp EEEESSHHHHHHHHC
T ss_pred ceEECCHHHHHHHHH
Confidence 788999999998753
No 48
>PRK13337 putative lipid kinase; Reviewed
Probab=71.29 E-value=11 Score=32.97 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=30.8
Q ss_pred HHHHHHHHHCCC-eEEEcCCccChhHHHHHHHHhcC-CeEEEEeCCc
Q 028644 36 LDLGQELVSKKL-DLVYGGGSVGLMGLVSHVVHRGG-GHVLGIIPKT 80 (206)
Q Consensus 36 ~~lG~~lA~~g~-~lv~GGg~~GlM~a~~~ga~~~g-G~viGv~P~~ 80 (206)
.++.+.+++.++ .||..||. |...++..+....+ ...+||+|..
T Consensus 47 ~~~a~~~~~~~~d~vvv~GGD-GTl~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 47 TLAAERAVERKFDLVIAAGGD-GTLNEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred HHHHHHHHhcCCCEEEEEcCC-CHHHHHHHHHhhCCCCCcEEEECCc
Confidence 344555556554 56677777 99999999887654 3579999953
No 49
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=71.22 E-value=7.2 Score=29.49 Aligned_cols=44 Identities=27% Similarity=0.324 Sum_probs=29.8
Q ss_pred HHHHHHHHHCCC--eEEEcCCccChhHHHHHHHHhcCC---eEEEEeCCc
Q 028644 36 LDLGQELVSKKL--DLVYGGGSVGLMGLVSHVVHRGGG---HVLGIIPKT 80 (206)
Q Consensus 36 ~~lG~~lA~~g~--~lv~GGg~~GlM~a~~~ga~~~gG---~viGv~P~~ 80 (206)
+++.+....... .||..||. |....+..+....+. ..+|++|..
T Consensus 43 ~~~~~~~~~~~~~~~ivv~GGD-GTl~~vv~~l~~~~~~~~~~l~iiP~G 91 (130)
T PF00781_consen 43 EALARILALDDYPDVIVVVGGD-GTLNEVVNGLMGSDREDKPPLGIIPAG 91 (130)
T ss_dssp HHHHHHHHHTTS-SEEEEEESH-HHHHHHHHHHCTSTSSS--EEEEEE-S
T ss_pred HHHHHHHhhccCccEEEEEcCc-cHHHHHHHHHhhcCCCccceEEEecCC
Confidence 344444444444 77777777 888888888887765 479999854
No 50
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=70.33 E-value=11 Score=33.78 Aligned_cols=56 Identities=16% Similarity=0.174 Sum_probs=37.7
Q ss_pred HHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEec-----CccchhHHHHHHH
Q 028644 103 RKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV-----DGYYNSLLNFIDK 161 (206)
Q Consensus 103 Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~-----~g~w~~l~~~l~~ 161 (206)
+-+...+..|+|||+.| .-||+|-..++.+.-- .+||||+-+. .-..|...++++.
T Consensus 70 ~I~~~~~~~dG~VVtHG-TDTme~TA~~Ls~~l~--~~kPVVlTGsmrp~~~~~sDg~~NL~~A 130 (336)
T TIGR00519 70 AVKKEYDDYDGFVITHG-TDTMAYTAAALSFMLE--TPKPVVFTGAQRSSDRPSSDAALNLLCA 130 (336)
T ss_pred HHHHHHhcCCeEEEccC-CchHHHHHHHHHHHcC--CCCCEEEECCCCCCCCcCcchHHHHHHH
Confidence 33334446899999986 8999999988876442 3899999753 2234455555443
No 51
>PRK13054 lipid kinase; Reviewed
Probab=69.66 E-value=12 Score=32.61 Aligned_cols=43 Identities=23% Similarity=0.411 Sum_probs=28.8
Q ss_pred HHHHHHHHCCC-eEEEcCCccChhHHHHHHHHhcC-C--eEEEEeCCc
Q 028644 37 DLGQELVSKKL-DLVYGGGSVGLMGLVSHVVHRGG-G--HVLGIIPKT 80 (206)
Q Consensus 37 ~lG~~lA~~g~-~lv~GGg~~GlM~a~~~ga~~~g-G--~viGv~P~~ 80 (206)
++.+.+++.++ .||..||. |....++.+..... + ..+||+|..
T Consensus 47 ~~a~~~~~~~~d~vvv~GGD-GTl~evv~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 47 RYVEEALALGVATVIAGGGD-GTINEVATALAQLEGDARPALGILPLG 93 (300)
T ss_pred HHHHHHHHcCCCEEEEECCc-cHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 44444445554 56677777 98888888887542 2 479999953
No 52
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=69.43 E-value=12 Score=32.55 Aligned_cols=44 Identities=20% Similarity=0.356 Sum_probs=30.4
Q ss_pred HHHHHHHHHCCC-eEEEcCCccChhHHHHHHHHhcC-C--eEEEEeCCc
Q 028644 36 LDLGQELVSKKL-DLVYGGGSVGLMGLVSHVVHRGG-G--HVLGIIPKT 80 (206)
Q Consensus 36 ~~lG~~lA~~g~-~lv~GGg~~GlM~a~~~ga~~~g-G--~viGv~P~~ 80 (206)
.++.+.+++.++ .||.-||. |...++..|..+.+ + ..+||+|..
T Consensus 42 ~~~a~~~~~~~~d~vv~~GGD-GTi~ev~ngl~~~~~~~~~~lgiiP~G 89 (293)
T TIGR03702 42 QRYVAEALALGVSTVIAGGGD-GTLREVATALAQIRDDAAPALGLLPLG 89 (293)
T ss_pred HHHHHHHHHcCCCEEEEEcCC-hHHHHHHHHHHhhCCCCCCcEEEEcCC
Confidence 445555556554 55666776 99999999998654 2 359999953
No 53
>PRK13055 putative lipid kinase; Reviewed
Probab=68.93 E-value=12 Score=33.35 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=30.5
Q ss_pred HHHHHHHHHCCC-eEEEcCCccChhHHHHHHHHhcC-CeEEEEeCCc
Q 028644 36 LDLGQELVSKKL-DLVYGGGSVGLMGLVSHVVHRGG-GHVLGIIPKT 80 (206)
Q Consensus 36 ~~lG~~lA~~g~-~lv~GGg~~GlM~a~~~ga~~~g-G~viGv~P~~ 80 (206)
.++.+.+++.++ .||..||. |.+.+++.+....+ ...+||+|..
T Consensus 49 ~~~~~~~~~~~~d~vvv~GGD-GTl~evvngl~~~~~~~~LgiiP~G 94 (334)
T PRK13055 49 KNEAKRAAEAGFDLIIAAGGD-GTINEVVNGIAPLEKRPKMAIIPAG 94 (334)
T ss_pred HHHHHHHhhcCCCEEEEECCC-CHHHHHHHHHhhcCCCCcEEEECCC
Confidence 344444555554 55667777 99999999988654 4569999953
No 54
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=68.01 E-value=33 Score=28.47 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=44.3
Q ss_pred HCCCeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceeec---cCCHHHHHHHHHh---------hC
Q 028644 44 SKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKP---VADMHQRKAEMAR---------NS 111 (206)
Q Consensus 44 ~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~---~~~~~~Rk~~m~~---------~s 111 (206)
+.|-.|||||- |..+.++-.++++++..++-+- +...|.+. .-|+ .+++-+..+..++ .-
T Consensus 2 sagrVivYGGk--GALGSacv~~FkannywV~siD--l~eNe~Ad----~sI~V~~~~swtEQe~~v~~~vg~sL~gekv 73 (236)
T KOG4022|consen 2 SAGRVIVYGGK--GALGSACVEFFKANNYWVLSID--LSENEQAD----SSILVDGNKSWTEQEQSVLEQVGSSLQGEKV 73 (236)
T ss_pred CCceEEEEcCc--chHhHHHHHHHHhcCeEEEEEe--eccccccc----ceEEecCCcchhHHHHHHHHHHHHhhccccc
Confidence 35778999983 9999999999999987766531 11122222 1222 2355444444433 36
Q ss_pred CeeEEecCCc
Q 028644 112 DCFIALPGGY 121 (206)
Q Consensus 112 Da~IvlpGG~ 121 (206)
|+++++.||.
T Consensus 74 Dav~CVAGGW 83 (236)
T KOG4022|consen 74 DAVFCVAGGW 83 (236)
T ss_pred ceEEEeeccc
Confidence 9999998885
No 55
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=66.60 E-value=26 Score=29.45 Aligned_cols=41 Identities=27% Similarity=0.427 Sum_probs=23.1
Q ss_pred HHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCcc
Q 028644 107 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGY 151 (206)
Q Consensus 107 m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~ 151 (206)
.....|++++ .+|.|+-+.+..+..... .++.|++ +|.++.
T Consensus 74 ~~~~~d~v~i-g~gl~~~~~~~~i~~~~~--~~~~pvV-lDa~~~ 114 (254)
T cd01171 74 LLERADAVVI-GPGLGRDEEAAEILEKAL--AKDKPLV-LDADAL 114 (254)
T ss_pred hhccCCEEEE-ecCCCCCHHHHHHHHHHH--hcCCCEE-EEcHHH
Confidence 4456777665 556887544444433222 3467865 677653
No 56
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=66.37 E-value=78 Score=27.45 Aligned_cols=113 Identities=23% Similarity=0.352 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHCCC--eEEEcCCccChhHHH--HHHHHh-cC--CeEEEEeCCcccccc---cCCCCCc---eeeccCC
Q 028644 33 DAALDLGQELVSKKL--DLVYGGGSVGLMGLV--SHVVHR-GG--GHVLGIIPKTLMNKE---ITGETVG---EVKPVAD 99 (206)
Q Consensus 33 ~~A~~lG~~lA~~g~--~lv~GGg~~GlM~a~--~~ga~~-~g--G~viGv~P~~~~~~e---~~~~~~~---~~~~~~~ 99 (206)
++|+ .+-.+|+.|+ .+|+||-+ |+-+.+ .-.+.+ .| ..=+-|+|....... ....|+. ..+--+|
T Consensus 60 ~Ra~-~AielA~~G~~ValVSsGDp-gVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hDF~~ISLSD 137 (249)
T COG1010 60 ERAK-EAIELAAEGRDVALVSSGDP-GVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHDFCVISLSD 137 (249)
T ss_pred HHHH-HHHHHHhcCCeEEEEeCCCc-cHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccceEEEEhHh
Confidence 4443 4556677666 56888877 875443 333333 44 344667887532110 0011111 1121122
Q ss_pred H------HHHHHHHHhhCCeeEEe--cCCcC---cHHHHHHHHHHHHhCCCCccEEEEecC
Q 028644 100 M------HQRKAEMARNSDCFIAL--PGGYG---TLEELLEVITWAQLGIHDKPVGLINVD 149 (206)
Q Consensus 100 ~------~~Rk~~m~~~sDa~Ivl--pGG~G---TL~El~~~~~~~~~g~~~kPiill~~~ 149 (206)
. -++.-.....+|.+|+| |=+-+ -+.+.++++. ++...+.||++...-
T Consensus 138 lLtPwe~IekRl~aAA~adfVi~~YNP~s~~R~~~~~~a~eil~--~~r~~~tpVgivrna 196 (249)
T COG1010 138 LLTPWEVIEKRLRAAAEADFVIALYNPISKRRPEQLGRAFEILR--EHRSPDTPVGIVRNA 196 (249)
T ss_pred cCCcHHHHHHHHHHHhhCCEEEEEECCccccchHHHHHHHHHHH--HhcCCCCcEEEEecC
Confidence 1 24555577889999988 66665 4455555543 222346899998643
No 57
>PRK09267 flavodoxin FldA; Validated
Probab=66.25 E-value=59 Score=25.49 Aligned_cols=100 Identities=20% Similarity=0.262 Sum_probs=0.0
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCcccccccCCCCCce
Q 028644 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGE 93 (206)
Q Consensus 14 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~ 93 (206)
|++|.|+.+|..++.. +.|+++++.|......++
T Consensus 1 mmki~IiY~S~tGnT~---~vA~~Ia~~l~~~~~~~~------------------------------------------- 34 (169)
T PRK09267 1 MAKIGIFFGSDTGNTE---DIAKMIQKKLGKDVADVV------------------------------------------- 34 (169)
T ss_pred CCeEEEEEECCCChHH---HHHHHHHHHhCCCceEEE-------------------------------------------
Q ss_pred eeccCCHHHHHHHHHhhCCeeEEecCCc--CcHHHHHHHH--HHHHhCCCCccEEEEecCccc---hhHHHHHHHHHH
Q 028644 94 VKPVADMHQRKAEMARNSDCFIALPGGY--GTLEELLEVI--TWAQLGIHDKPVGLINVDGYY---NSLLNFIDKAVD 164 (206)
Q Consensus 94 ~~~~~~~~~Rk~~m~~~sDa~IvlpGG~--GTL~El~~~~--~~~~~g~~~kPiill~~~g~w---~~l~~~l~~~~~ 164 (206)
++..-...-+...|++|+--.-. |-+...+..+ .+......+||++++...+.. +.....++.+.+
T Consensus 35 -----~~~~~~~~~l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg~g~~~~~~~~~~~~~~~l~~ 107 (169)
T PRK09267 35 -----DIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFGLGDQEDYAEYFCDAMGTLYD 107 (169)
T ss_pred -----EhhhCCHhhHhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEecCCCCcchHHHHHHHHHHHH
No 58
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=66.21 E-value=16 Score=32.50 Aligned_cols=36 Identities=31% Similarity=0.381 Sum_probs=28.8
Q ss_pred hhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEe
Q 028644 109 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 147 (206)
Q Consensus 109 ~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~ 147 (206)
+..|+|||..| .-||+|...++.+.- ..+||||+-+
T Consensus 77 ~~~dGiVVtHG-TDTmeeTA~~L~~~l--~~~kPVVlTG 112 (323)
T cd00411 77 DSYDGFVITHG-TDTMEETAYFLSLTL--ENDKPVVLTG 112 (323)
T ss_pred HhcCcEEEEcC-cccHHHHHHHHHHHh--cCCCCEEEEC
Confidence 45899999986 899999998887643 2389999974
No 59
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=64.97 E-value=31 Score=26.37 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=6.1
Q ss_pred CeeEEecCCcC
Q 028644 112 DCFIALPGGYG 122 (206)
Q Consensus 112 Da~IvlpGG~G 122 (206)
|++|||+||..
T Consensus 1 d~IvVLG~~~~ 11 (150)
T cd06259 1 DAIVVLGGGVN 11 (150)
T ss_pred CEEEEeCCccC
Confidence 45555555554
No 60
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=64.88 E-value=1.1e+02 Score=27.94 Aligned_cols=115 Identities=15% Similarity=0.146 Sum_probs=62.4
Q ss_pred EcCCccChhHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceeec--c-CCHHHHHHHHHh--hCCeeEE-ecCCcCcH
Q 028644 51 YGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKP--V-ADMHQRKAEMAR--NSDCFIA-LPGGYGTL 124 (206)
Q Consensus 51 ~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~--~-~~~~~Rk~~m~~--~sDa~Iv-lpGG~GTL 124 (206)
-+.|- |+.-+..+.....||.. .|+++ +-- . +.+..=-+.+++ ..|++++ ++||+.-.
T Consensus 262 i~nGa-Gl~m~t~D~i~~~gg~p--------------aNPlD-lgg~a~~e~~~~aL~~ll~Dp~VdaVlv~i~ggi~~~ 325 (392)
T PRK14046 262 IVNGA-GLAMATMDMIKLAGGEP--------------ANFLD-VGGGASPERVAKAFRLVLSDRNVKAILVNIFAGINRC 325 (392)
T ss_pred EeCCc-cHHHHHHHHHHhcCCCC--------------cCCEE-ecCCCCHHHHHHHHHHHHcCCCCCEEEEEcCCCCCCH
Confidence 34443 88888889888888752 22221 110 1 111111223332 2366554 46777766
Q ss_pred HHHHHHHHHHHhC-CCCccEEEEecCc-cchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHhHhc
Q 028644 125 EELLEVITWAQLG-IHDKPVGLINVDG-YYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEVG 192 (206)
Q Consensus 125 ~El~~~~~~~~~g-~~~kPiill~~~g-~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~~~ 192 (206)
+++.+.+.-..-. ..+||+++- ..| -.+...+ .+.+.|. .++..+|.+|+++...+.
T Consensus 326 ~~vA~~Ii~a~~~~~~~kPvvv~-l~G~~~e~~~~---iL~~~Gi-------pvf~~~~~~~a~~~~v~~ 384 (392)
T PRK14046 326 DWVAEGVVQAAREVGIDVPLVVR-LAGTNVEEGRK---ILAESGL-------PIITADTLAEAAEKAVEA 384 (392)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEE-cCCCCHHHHHH---HHHHcCC-------CeeecCCHHHHHHHHHHH
Confidence 8888777643322 257899553 333 2222222 2333342 378899999999987654
No 61
>PRK11914 diacylglycerol kinase; Reviewed
Probab=63.42 E-value=16 Score=31.86 Aligned_cols=45 Identities=31% Similarity=0.374 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHCCC-eEEEcCCccChhHHHHHHHHhcCCeEEEEeCCc
Q 028644 34 AALDLGQELVSKKL-DLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKT 80 (206)
Q Consensus 34 ~A~~lG~~lA~~g~-~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~ 80 (206)
.+.++.+.+++.++ .||..||. |...+++.+.... +..+||+|..
T Consensus 52 ~~~~~a~~~~~~~~d~vvv~GGD-GTi~evv~~l~~~-~~~lgiiP~G 97 (306)
T PRK11914 52 DARHLVAAALAKGTDALVVVGGD-GVISNALQVLAGT-DIPLGIIPAG 97 (306)
T ss_pred HHHHHHHHHHhcCCCEEEEECCc-hHHHHHhHHhccC-CCcEEEEeCC
Confidence 45667777777765 46677777 9999999887643 4679999953
No 62
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=63.21 E-value=9.5 Score=28.87 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=22.5
Q ss_pred eEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEe
Q 028644 114 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 147 (206)
Q Consensus 114 ~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~ 147 (206)
.|+.-||=||++|+...+.-........|+.++-
T Consensus 52 ~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP 85 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLP 85 (124)
T ss_pred EEEEEccccHHHHHHHHHHhcccccCCCcEEEeC
Confidence 7778999999999988773211111115787773
No 63
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=63.17 E-value=36 Score=27.98 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=42.8
Q ss_pred HHHHHHHhhCCeeEEecC--CcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEc
Q 028644 102 QRKAEMARNSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 179 (206)
Q Consensus 102 ~Rk~~m~~~sDa~IvlpG--G~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~ 179 (206)
+....++..||++|.-.. |+|+- +.|++ ..++|++..+..+....+.. ......+.-.
T Consensus 244 ~~~~~~~~~ad~~i~ps~~e~~~~~--~~Ea~------a~G~Pvi~~~~~~~~~~~~~------------~~~~g~~~~~ 303 (348)
T cd03820 244 KNIEEYYAKASIFVLTSRFEGFPMV--LLEAM------AFGLPVISFDCPTGPSEIIE------------DGVNGLLVPN 303 (348)
T ss_pred chHHHHHHhCCEEEeCccccccCHH--HHHHH------HcCCCEEEecCCCchHhhhc------------cCcceEEeCC
Confidence 344557778998775432 33432 66777 47899998765443333221 1112233444
Q ss_pred CCHHHHHHHhHhccC
Q 028644 180 PNAKELVQKLEVGFL 194 (206)
Q Consensus 180 ~~~ee~~~~l~~~~~ 194 (206)
+|++++.+.|.+...
T Consensus 304 ~~~~~~~~~i~~ll~ 318 (348)
T cd03820 304 GDVEALAEALLRLME 318 (348)
T ss_pred CCHHHHHHHHHHHHc
Confidence 678899998888753
No 64
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.80 E-value=14 Score=32.75 Aligned_cols=107 Identities=21% Similarity=0.295 Sum_probs=62.0
Q ss_pred CCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCcccccccCCCCCc
Q 028644 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVG 92 (206)
Q Consensus 13 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~ 92 (206)
++++|.++-- ++ .+...+.+.++-++|.+.|+.+..---. . ... + ..
T Consensus 2 ~~kkv~lI~n--~~-~~~~~~~~~~i~~~L~~~g~~v~v~~~~-~---------~~~-----~------------~~--- 48 (305)
T PRK02645 2 QLKQVIIAYK--AG-SSQAKEAAERCAKQLEARGCKVLMGPSG-P---------KDN-----P------------YP--- 48 (305)
T ss_pred CcCEEEEEEe--CC-CHHHHHHHHHHHHHHHHCCCEEEEecCc-h---------hhc-----c------------cc---
Confidence 4567888843 33 3455567888888898888886542211 0 000 0 00
Q ss_pred eeeccCCHHHHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecC---ccchhH------HHHHHHHH
Q 028644 93 EVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD---GYYNSL------LNFIDKAV 163 (206)
Q Consensus 93 ~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~---g~w~~l------~~~l~~~~ 163 (206)
. . ........|.+|++ ||=||+.+....+. ..++|++.+|.+ ||.... .+.++++.
T Consensus 49 ~------~---~~~~~~~~d~vi~~-GGDGT~l~~~~~~~-----~~~~pv~gin~~G~lGFL~~~~~~~~~~~~l~~i~ 113 (305)
T PRK02645 49 V------F---LASASELIDLAIVL-GGDGTVLAAARHLA-----PHDIPILSVNVGGHLGFLTHPRDLLQDESVWDRLQ 113 (305)
T ss_pred c------h---hhccccCcCEEEEE-CCcHHHHHHHHHhc-----cCCCCEEEEecCCcceEecCchhhcchHHHHHHHH
Confidence 0 0 01111346776666 99999998876652 357999999862 566653 34555555
Q ss_pred HcCC
Q 028644 164 DDGF 167 (206)
Q Consensus 164 ~~gf 167 (206)
+..|
T Consensus 114 ~g~~ 117 (305)
T PRK02645 114 EDRY 117 (305)
T ss_pred cCCc
Confidence 4433
No 65
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=62.31 E-value=11 Score=31.30 Aligned_cols=41 Identities=17% Similarity=0.075 Sum_probs=30.8
Q ss_pred CCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EcC
Q 028644 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV-YGG 53 (206)
Q Consensus 13 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv-~GG 53 (206)
++++|+|||||=++...-+...|+++.+.+...-...+ ++.
T Consensus 1 ~~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~ 42 (197)
T COG1057 1 KMKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPV 42 (197)
T ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCC
Confidence 46899999999888777888888888887776653333 444
No 66
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=62.25 E-value=5.2 Score=40.66 Aligned_cols=46 Identities=30% Similarity=0.470 Sum_probs=36.0
Q ss_pred HHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhc-----------CCeEEEEeCCcccc
Q 028644 36 LDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRG-----------GGHVLGIIPKTLMN 83 (206)
Q Consensus 36 ~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~-----------gG~viGv~P~~~~~ 83 (206)
.+|+|.|.-+-+.||.||| |.=++++-|++.| ||.+||-.-..++.
T Consensus 829 sRLAR~LtGnaIgLVLGGG--GARG~ahiGvl~ALeE~GIPvD~VGGTSIGafiGaLYA 885 (1158)
T KOG2968|consen 829 SRLARILTGNAIGLVLGGG--GARGAAHIGVLQALEEAGIPVDMVGGTSIGAFIGALYA 885 (1158)
T ss_pred HHHHHHHhCCeEEEEecCc--chhhhhHHHHHHHHHHcCCCeeeeccccHHHhhhhhhh
Confidence 4689999999999999997 8889998888763 67777764444443
No 67
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=62.23 E-value=74 Score=24.85 Aligned_cols=41 Identities=7% Similarity=-0.027 Sum_probs=36.1
Q ss_pred HHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEE
Q 028644 35 ALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 35 A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 76 (206)
..-+...|..+||.+++-|-. =-.+.+.+.|.+.+-..||+
T Consensus 18 k~iv~~~l~~~GfeVi~LG~~-v~~e~~v~aa~~~~adiVgl 58 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVNLGVL-SPQEEFIKAAIETKADAILV 58 (134)
T ss_pred HHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 355677788899999999986 88899999999999999999
No 68
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=62.20 E-value=1e+02 Score=26.57 Aligned_cols=69 Identities=16% Similarity=0.132 Sum_probs=40.4
Q ss_pred HHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCC
Q 028644 102 QRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 181 (206)
Q Consensus 102 ~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~ 181 (206)
..-..++..||++|.=+| |..+|. + ..++|++..+..+-+.. ..+.|. .+.+.+|
T Consensus 269 ~~~~~l~~~ad~~v~~Sg--gi~~Ea---~------~~g~PvI~~~~~~~~~~-------~~~~g~-------~~~~~~~ 323 (363)
T cd03786 269 LYFLLLLKNADLVLTDSG--GIQEEA---S------FLGVPVLNLRDRTERPE-------TVESGT-------NVLVGTD 323 (363)
T ss_pred HHHHHHHHcCcEEEEcCc--cHHhhh---h------hcCCCEEeeCCCCccch-------hhheee-------EEecCCC
Confidence 344556778999985555 444443 3 35799999864322221 222231 1333457
Q ss_pred HHHHHHHhHhccCC
Q 028644 182 AKELVQKLEVGFLF 195 (206)
Q Consensus 182 ~ee~~~~l~~~~~~ 195 (206)
++++.+.|.+....
T Consensus 324 ~~~i~~~i~~ll~~ 337 (363)
T cd03786 324 PEAILAAIEKLLSD 337 (363)
T ss_pred HHHHHHHHHHHhcC
Confidence 89998888876643
No 69
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=61.18 E-value=39 Score=28.62 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=45.0
Q ss_pred HHHHHHHhhCCeeEEec----CCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEE
Q 028644 102 QRKAEMARNSDCFIALP----GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 177 (206)
Q Consensus 102 ~Rk~~m~~~sDa~Ivlp----GG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~ 177 (206)
+....++..||++|... .|+|.- +.|++ ..++||+.-+..+..+.+.. ......++
T Consensus 255 ~~~~~~~~~ad~~i~ps~~~~e~~g~~--~~Ea~------~~g~Pvi~~~~~~~~~~i~~------------~~~~g~~~ 314 (357)
T cd03795 255 EEKAALLAACDVFVFPSVERSEAFGIV--LLEAM------AFGKPVISTEIGTGGSYVNL------------HGVTGLVV 314 (357)
T ss_pred HHHHHHHHhCCEEEeCCcccccccchH--HHHHH------HcCCCEEecCCCCchhHHhh------------CCCceEEe
Confidence 34566778899987652 455642 56666 36899998776543332211 01223345
Q ss_pred EcCCHHHHHHHhHhcc
Q 028644 178 SAPNAKELVQKLEVGF 193 (206)
Q Consensus 178 ~~~~~ee~~~~l~~~~ 193 (206)
-.+|++++.+.|.+..
T Consensus 315 ~~~d~~~~~~~i~~l~ 330 (357)
T cd03795 315 PPGDPAALAEAIRRLL 330 (357)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5678999999988765
No 70
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=60.81 E-value=1.3e+02 Score=28.58 Aligned_cols=141 Identities=16% Similarity=0.099 Sum_probs=69.2
Q ss_pred HHHccCCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHC--CCeEEEcCCcc-------ChhHHHHHHHHhcCCeEEEEe
Q 028644 7 AAKAMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSK--KLDLVYGGGSV-------GLMGLVSHVVHRGGGHVLGII 77 (206)
Q Consensus 7 ~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~--g~~lv~GGg~~-------GlM~a~~~ga~~~gG~viGv~ 77 (206)
+++.+..++++-..|+-.....+ -.....++-+.|.+. |..+++=|.-. -...++.++....+-++|=-.
T Consensus 257 ~d~~rp~~p~v~~vGgi~~~~~~-~~~l~~~l~~fl~~~~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~ 335 (507)
T PHA03392 257 FDNNRPVPPSVQYLGGLHLHKKP-PQPLDDYLEEFLNNSTNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKY 335 (507)
T ss_pred ccCCCCCCCCeeeecccccCCCC-CCCCCHHHHHHHhcCCCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEE
Confidence 34445555677777764321100 001123455556554 55666655421 134555555555554443222
Q ss_pred CCcccccccCCCCCceeeccCCHHHHHHHHHhh--CCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhH
Q 028644 78 PKTLMNKEITGETVGEVKPVADMHQRKAEMARN--SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSL 155 (206)
Q Consensus 78 P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~--sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l 155 (206)
.....+...+ ..+.+.+-+.. .. ++.+ +++| +-.||.||..|.. .+++|++.+-. ++|..
T Consensus 336 ~~~~~~~~~p----~Nv~i~~w~Pq-~~-lL~hp~v~~f-ItHGG~~s~~Eal---------~~GvP~v~iP~--~~DQ~ 397 (507)
T PHA03392 336 DGEVEAINLP----ANVLTQKWFPQ-RA-VLKHKNVKAF-VTQGGVQSTDEAI---------DALVPMVGLPM--MGDQF 397 (507)
T ss_pred CCCcCcccCC----CceEEecCCCH-HH-HhcCCCCCEE-EecCCcccHHHHH---------HcCCCEEECCC--CccHH
Confidence 2111110111 23344444443 33 4333 4444 5678899988765 47999998753 55554
Q ss_pred HHHHHHHHHcCC
Q 028644 156 LNFIDKAVDDGF 167 (206)
Q Consensus 156 ~~~l~~~~~~gf 167 (206)
.+ .+.+.+.|.
T Consensus 398 ~N-a~rv~~~G~ 408 (507)
T PHA03392 398 YN-TNKYVELGI 408 (507)
T ss_pred HH-HHHHHHcCc
Confidence 43 345666663
No 71
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=59.47 E-value=15 Score=27.67 Aligned_cols=40 Identities=28% Similarity=0.461 Sum_probs=24.5
Q ss_pred HHhhCCe--eEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEe
Q 028644 107 MARNSDC--FIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 147 (206)
Q Consensus 107 m~~~sDa--~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~ 147 (206)
.....+. .|+.-||=||++|+...+.-.... ...|+.++-
T Consensus 48 ~~~~~~~~~~ivv~GGDGTl~~vv~~l~~~~~~-~~~~l~iiP 89 (130)
T PF00781_consen 48 ILALDDYPDVIVVVGGDGTLNEVVNGLMGSDRE-DKPPLGIIP 89 (130)
T ss_dssp HHHHTTS-SEEEEEESHHHHHHHHHHHCTSTSS-S--EEEEEE
T ss_pred HHhhccCccEEEEEcCccHHHHHHHHHhhcCCC-ccceEEEec
Confidence 3444544 888889999999998877211000 022777764
No 72
>PRK08105 flavodoxin; Provisional
Probab=59.46 E-value=13 Score=29.21 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=26.6
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 028644 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (206)
Q Consensus 14 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (206)
|.+|.|+-+|..++.+ +.|+++++.|.+.|+.+.
T Consensus 1 m~~i~I~YgS~tGnte---~~A~~l~~~l~~~g~~~~ 34 (149)
T PRK08105 1 MAKVGIFVGTVYGNAL---LVAEEAEAILTAQGHEVT 34 (149)
T ss_pred CCeEEEEEEcCchHHH---HHHHHHHHHHHhCCCceE
Confidence 4578999899988644 567899999988888753
No 73
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=58.66 E-value=25 Score=32.67 Aligned_cols=48 Identities=13% Similarity=0.206 Sum_probs=35.5
Q ss_pred CCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEec-----CccchhHHHHHHH
Q 028644 111 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV-----DGYYNSLLNFIDK 161 (206)
Q Consensus 111 sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~-----~g~w~~l~~~l~~ 161 (206)
.|+|||..| .-||+|-..++.++- ..+|||||.+. .--.|...+++..
T Consensus 153 ~dGvVVtHG-TDTM~yTA~aLs~~l--~~~kPVVlTGAqrp~~~~~sDa~~NL~~A 205 (419)
T PRK04183 153 ADGVVVAHG-TDTMHYTAAALSFML--KTPVPIVFVGAQRSSDRPSSDAAMNLICA 205 (419)
T ss_pred CCeEEEecC-CchHHHHHHHHHHhc--CCCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 799999986 899999999888765 45899999763 1234555665544
No 74
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=58.58 E-value=62 Score=28.42 Aligned_cols=62 Identities=23% Similarity=0.222 Sum_probs=37.4
Q ss_pred cCCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC------------------------------eEEEcCCccChhH
Q 028644 11 MSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKL------------------------------DLVYGGGSVGLMG 60 (206)
Q Consensus 11 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~------------------------------~lv~GGg~~GlM~ 60 (206)
.+++++|+|+.-.. .+...+.+.++.++|.++|+ .+++-||. |.|-
T Consensus 2 ~~~~~~v~iv~~~~---~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD-Gt~l 77 (291)
T PRK02155 2 KSQFKTVALIGRYQ---TPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGD-GTML 77 (291)
T ss_pred CCcCCEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCc-HHHH
Confidence 34567888884322 24444556666666654433 34556666 7777
Q ss_pred HHHHHHHhcCCeEEEE
Q 028644 61 LVSHVVHRGGGHVLGI 76 (206)
Q Consensus 61 a~~~ga~~~gG~viGv 76 (206)
-+++.....+-.++||
T Consensus 78 ~~~~~~~~~~~pilGI 93 (291)
T PRK02155 78 GIGRQLAPYGVPLIGI 93 (291)
T ss_pred HHHHHhcCCCCCEEEE
Confidence 7777665556677777
No 75
>PRK09004 FMN-binding protein MioC; Provisional
Probab=58.54 E-value=12 Score=29.28 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=26.1
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 028644 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (206)
Q Consensus 14 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (206)
|++|.|+.+|..++.+ +.|+++.+.+.+.|+.+.
T Consensus 1 M~~i~I~ygS~tGnae---~~A~~l~~~~~~~g~~~~ 34 (146)
T PRK09004 1 MADITLISGSTLGGAE---YVADHLAEKLEEAGFSTE 34 (146)
T ss_pred CCeEEEEEEcCchHHH---HHHHHHHHHHHHcCCceE
Confidence 4578999999988644 567888888888887653
No 76
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=58.15 E-value=38 Score=27.97 Aligned_cols=70 Identities=23% Similarity=0.273 Sum_probs=41.2
Q ss_pred HHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCCHHH
Q 028644 105 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKE 184 (206)
Q Consensus 105 ~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee 184 (206)
..++..||++|.-...-|.-.=+.|++ ..++|++.-+..+ +.+++ . +.....+.-.+|+++
T Consensus 258 ~~~~~~adi~i~ps~~e~~~~~~~Ea~------~~G~Pvi~s~~~~-~~~~i-------~-----~~~~g~~~~~~~~~~ 318 (359)
T cd03808 258 PELLAAADVFVLPSYREGLPRVLLEAM------AMGRPVIATDVPG-CREAV-------I-----DGVNGFLVPPGDAEA 318 (359)
T ss_pred HHHHHhccEEEecCcccCcchHHHHHH------HcCCCEEEecCCC-chhhh-------h-----cCcceEEECCCCHHH
Confidence 346788998775433222223366777 4789999876543 22222 1 112233444568999
Q ss_pred HHHHhHhcc
Q 028644 185 LVQKLEVGF 193 (206)
Q Consensus 185 ~~~~l~~~~ 193 (206)
+.+.|.+..
T Consensus 319 ~~~~i~~l~ 327 (359)
T cd03808 319 LADAIERLI 327 (359)
T ss_pred HHHHHHHHH
Confidence 999888754
No 77
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=57.91 E-value=26 Score=30.40 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=29.5
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 028644 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (206)
Q Consensus 14 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (206)
+++|+|.+|......+.=...++.+.+.|.+.||.++.
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~ 40 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVG 40 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEE
Confidence 44788887766655566668999999999999998653
No 78
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=57.67 E-value=75 Score=28.32 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=20.5
Q ss_pred CCeEEEcCCccChhHHHHHHHHhcCC-eEEEE
Q 028644 46 KLDLVYGGGSVGLMGLVSHVVHRGGG-HVLGI 76 (206)
Q Consensus 46 g~~lv~GGg~~GlM~a~~~ga~~~gG-~viGv 76 (206)
+..+|.|.|+.|||. ...|...|. ++|.+
T Consensus 170 ~~V~V~GaGpIGLla--~~~a~~~Ga~~Viv~ 199 (350)
T COG1063 170 GTVVVVGAGPIGLLA--IALAKLLGASVVIVV 199 (350)
T ss_pred CEEEEECCCHHHHHH--HHHHHHcCCceEEEe
Confidence 358899999999997 444556664 44444
No 79
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=57.57 E-value=10 Score=32.35 Aligned_cols=38 Identities=29% Similarity=0.571 Sum_probs=29.6
Q ss_pred HHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchh
Q 028644 105 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNS 154 (206)
Q Consensus 105 ~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~ 154 (206)
..+++.||++|.+.+..| +|++ .++|||++++.. ||+.
T Consensus 194 ~~Ll~~s~~VvtinStvG-----lEAl------l~gkpVi~~G~~-~Y~~ 231 (269)
T PF05159_consen 194 YELLEQSDAVVTINSTVG-----LEAL------LHGKPVIVFGRA-FYAG 231 (269)
T ss_pred HHHHHhCCEEEEECCHHH-----HHHH------HcCCceEEecCc-ccCC
Confidence 357899999999998776 4556 579999999753 6654
No 80
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=56.98 E-value=1.5e+02 Score=26.87 Aligned_cols=36 Identities=33% Similarity=0.288 Sum_probs=23.7
Q ss_pred HHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCcc
Q 028644 105 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGY 151 (206)
Q Consensus 105 ~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~ 151 (206)
...+..||++|.-.| .-| .|+. ..++|.+++-..+.
T Consensus 291 ~~~l~~ADlvI~rSG-t~T-~E~a---------~lg~P~Ilip~~~~ 326 (396)
T TIGR03492 291 AEILHWADLGIAMAG-TAT-EQAV---------GLGKPVIQLPGKGP 326 (396)
T ss_pred HHHHHhCCEEEECcC-HHH-HHHH---------HhCCCEEEEeCCCC
Confidence 356689999998866 233 4432 35899999863333
No 81
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=56.77 E-value=43 Score=25.89 Aligned_cols=46 Identities=13% Similarity=0.059 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEE
Q 028644 30 CYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 30 ~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 76 (206)
.+-..+.-+...|...||.+++-|.. =-.+.+++.|.+.+..+||+
T Consensus 14 ~Hd~g~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~i 59 (132)
T TIGR00640 14 GHDRGAKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGV 59 (132)
T ss_pred ccHHHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 34445667788888999999999987 77788999999999999999
No 82
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=56.49 E-value=88 Score=27.15 Aligned_cols=60 Identities=17% Similarity=0.304 Sum_probs=37.0
Q ss_pred CHHHHHHHHHh-----hCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHc
Q 028644 99 DMHQRKAEMAR-----NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDD 165 (206)
Q Consensus 99 ~~~~Rk~~m~~-----~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~ 165 (206)
+=.+|-+-+.+ ..|++++.-||.|+.. +..-+.|..+..++|++ ++ |+++-.++-.+...
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~r-lL~~ld~~~~~~~pK~~--iG----ySDiTaL~~~l~~~ 110 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGYGANR-LLPYLDYDLIRANPKIF--VG----YSDITALHLALYAK 110 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcCCHHH-hhhhCCHHHHhhCCeEE--EE----ecHHHHHHHHHHHh
Confidence 33445544433 3689999999999964 66666777666555554 43 45655554444443
No 83
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=56.21 E-value=56 Score=28.63 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhCCeeEEecC--CcCcHHHHHHHHHHHHhCCCCccEEEEe-cCccchhHHHHHHHHHHcCCCCccccCcE
Q 028644 100 MHQRKAEMARNSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLIN-VDGYYNSLLNFIDKAVDDGFISPSQRSIL 176 (206)
Q Consensus 100 ~~~Rk~~m~~~sDa~IvlpG--G~GTL~El~~~~~~~~~g~~~kPiill~-~~g~w~~l~~~l~~~~~~gfi~~~~~~~i 176 (206)
..+.....+..+|++|.-.- |+|. =+.|++ ..++||+..+ .+| ..++ +.+ .....+
T Consensus 247 ~~~~~~~~~~~~d~~v~~s~~Egf~~--~~lEAm------a~G~Pvv~s~~~~g-~~ei-------v~~-----~~~G~l 305 (359)
T PRK09922 247 PWEVVQQKIKNVSALLLTSKFEGFPM--TLLEAM------SYGIPCISSDCMSG-PRDI-------IKP-----GLNGEL 305 (359)
T ss_pred cHHHHHHHHhcCcEEEECCcccCcCh--HHHHHH------HcCCCEEEeCCCCC-hHHH-------ccC-----CCceEE
Confidence 33444456678899886433 3332 366666 4789999988 443 3322 221 122334
Q ss_pred EEcCCHHHHHHHhHhccCC
Q 028644 177 VSAPNAKELVQKLEVGFLF 195 (206)
Q Consensus 177 ~~~~~~ee~~~~l~~~~~~ 195 (206)
+-.+|++++.+.|.++...
T Consensus 306 v~~~d~~~la~~i~~l~~~ 324 (359)
T PRK09922 306 YTPGNIDEFVGKLNKVISG 324 (359)
T ss_pred ECCCCHHHHHHHHHHHHhC
Confidence 5568999999999887533
No 84
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.16 E-value=14 Score=34.69 Aligned_cols=41 Identities=12% Similarity=0.313 Sum_probs=27.9
Q ss_pred hHHHHHccCCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 028644 4 NKAAAKAMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (206)
Q Consensus 4 ~~~~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (206)
+|+..++.+..+.|+|.||....-.+-. -.||.|+..||..
T Consensus 256 ~RL~srn~~~~P~V~Ilcgpgnnggdg~-----v~gRHL~~~G~~~ 296 (453)
T KOG2585|consen 256 KRLMSRNSHQWPLVAILCGPGNNGGDGL-----VCGRHLAQHGYTP 296 (453)
T ss_pred ccccccccCCCceEEEEeCCCCccchhH-----HHHHHHHHcCcee
Confidence 3445555566677999999876433333 2899999999754
No 85
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=56.12 E-value=22 Score=26.05 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=38.4
Q ss_pred HHHHHHhhCCeeEEec-CCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCC
Q 028644 103 RKAEMARNSDCFIALP-GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 181 (206)
Q Consensus 103 Rk~~m~~~sDa~Ivlp-GG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~ 181 (206)
....++..+|+.|..- =+.++-.-++|++ ..++|++..+. + +..+. ...... +.+.+|
T Consensus 63 e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~------~~G~pvi~~~~-~-~~~~~------------~~~~~~-~~~~~~ 121 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRFNEGFPNKLLEAM------AAGKPVIASDN-G-AEGIV------------EEDGCG-VLVAND 121 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS-SCC-HHHHHHH------CTT--EEEEHH-H-CHCHS---------------SEE-EE-TT-
T ss_pred HHHHHHHhCCEEEEEeeCCCcCcHHHHHHH------HhCCCEEECCc-c-hhhhe------------eecCCe-EEECCC
Confidence 4555677899877642 1346667777777 58999998764 2 22221 111222 444999
Q ss_pred HHHHHHHhHhcc
Q 028644 182 AKELVQKLEVGF 193 (206)
Q Consensus 182 ~ee~~~~l~~~~ 193 (206)
++++.+.|.+..
T Consensus 122 ~~~l~~~i~~l~ 133 (135)
T PF13692_consen 122 PEELAEAIERLL 133 (135)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999997653
No 86
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=55.15 E-value=45 Score=25.36 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHH----CCC-eEEEcCCc---cChhHHHHHHHHhcCCe
Q 028644 32 RDAALDLGQELVS----KKL-DLVYGGGS---VGLMGLVSHVVHRGGGH 72 (206)
Q Consensus 32 ~~~A~~lG~~lA~----~g~-~lv~GGg~---~GlM~a~~~ga~~~gG~ 72 (206)
.+.|+.+|..||+ .|+ .++++=++ .|-+.++++++.++|-.
T Consensus 70 ~~aa~~vG~lla~ra~~~gi~~v~fdr~~~~y~grv~a~~~~~re~Gl~ 118 (119)
T PF00861_consen 70 VEAAYLVGELLAKRALEKGIAKVVFDRGGYKYHGRVKALADGAREGGLE 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSEEEECTSTSSSSSHHHHHHHHHHHTTCB
T ss_pred EehHHHHHHHHHHHHHHcCCcEEEEcCCCCcccHHHHHHHHHHHHcCCC
Confidence 3678888888886 686 55664332 69999999999998843
No 87
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=55.12 E-value=33 Score=30.75 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=36.0
Q ss_pred HhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEec-----CccchhHHHHHHH
Q 028644 108 ARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV-----DGYYNSLLNFIDK 161 (206)
Q Consensus 108 ~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~-----~g~w~~l~~~l~~ 161 (206)
....|+|||..| .-||+|-...+.+.-. ..+|||||-+. .--.|...++.+.
T Consensus 79 ~~~~dG~VVtHG-TDTmeeTA~~L~~~l~-~~~kPVVlTGAmrP~~~~~sDg~~NL~~A 135 (335)
T PRK09461 79 YDDYDGFVILHG-TDTMAYTASALSFMLE-NLGKPVIVTGSQIPLAELRSDGQTNLLNA 135 (335)
T ss_pred hccCCeEEEeec-cchHHHHHHHHHHHHh-CCCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 356799999986 8999999988876432 23799999753 1234555555544
No 88
>PRK12361 hypothetical protein; Provisional
Probab=55.12 E-value=25 Score=33.48 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=30.7
Q ss_pred HHHHHHHHHHCCC-eEEEcCCccChhHHHHHHHHhcCCeEEEEeCCc
Q 028644 35 ALDLGQELVSKKL-DLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKT 80 (206)
Q Consensus 35 A~~lG~~lA~~g~-~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~ 80 (206)
|.++.+..++.|+ .||..||. |--..+..+.... +..+||+|..
T Consensus 286 a~~la~~~~~~~~d~Viv~GGD-GTl~ev~~~l~~~-~~~lgiiP~G 330 (547)
T PRK12361 286 AEALAKQARKAGADIVIACGGD-GTVTEVASELVNT-DITLGIIPLG 330 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCC-cHHHHHHHHHhcC-CCCEEEecCC
Confidence 3455666666665 56677777 9888888887654 4679999953
No 89
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=54.72 E-value=44 Score=27.28 Aligned_cols=88 Identities=17% Similarity=0.252 Sum_probs=54.3
Q ss_pred HHhhCCeeEEecCCcCcHHHHHHHHHHHH-----hC-CCCccEEEEec--Cccchh--HHHHHHHHHHcCC--CCccccC
Q 028644 107 MARNSDCFIALPGGYGTLEELLEVITWAQ-----LG-IHDKPVGLINV--DGYYNS--LLNFIDKAVDDGF--ISPSQRS 174 (206)
Q Consensus 107 m~~~sDa~IvlpGG~GTL~El~~~~~~~~-----~g-~~~kPiill~~--~g~w~~--l~~~l~~~~~~gf--i~~~~~~ 174 (206)
+...+|++|+.|=..+|+.-+..-++-.- +. ..++|+++.-. ...|.. ..+-++++.+.|. +++....
T Consensus 74 l~~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~ 153 (182)
T PRK07313 74 LAKRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGL 153 (182)
T ss_pred cccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCc
Confidence 44578999999999999887653221111 11 34799998732 146664 2333556667663 3333211
Q ss_pred ------cEEEcCCHHHHHHHhHhccC
Q 028644 175 ------ILVSAPNAKELVQKLEVGFL 194 (206)
Q Consensus 175 ------~i~~~~~~ee~~~~l~~~~~ 194 (206)
-..--.++|++++++.++..
T Consensus 154 la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 154 LACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred cccCCccCCCCCCHHHHHHHHHHHhc
Confidence 13446789999999988654
No 90
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=54.36 E-value=34 Score=24.88 Aligned_cols=38 Identities=24% Similarity=0.155 Sum_probs=28.8
Q ss_pred HHHHHHHHhhCCeeEEecC---CcCcHHHHHHHHHHHHhCCCCccEE
Q 028644 101 HQRKAEMARNSDCFIALPG---GYGTLEELLEVITWAQLGIHDKPVG 144 (206)
Q Consensus 101 ~~Rk~~m~~~sDa~IvlpG---G~GTL~El~~~~~~~~~g~~~kPii 144 (206)
..+.-.++..||+++.||| .-|..-|...|- ..++||+
T Consensus 50 m~~~l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~------~lGl~V~ 90 (92)
T PF14359_consen 50 MRICLAMLSDCDAIYMLPGWENSRGARLEHELAK------KLGLPVI 90 (92)
T ss_pred HHHHHHHHHhCCEEEEcCCcccCcchHHHHHHHH------HCCCeEe
Confidence 3456667789999999998 369999988776 3456664
No 91
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=54.09 E-value=28 Score=32.79 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=31.8
Q ss_pred HHHHHHHHHHCCC-eEEEcCCccChhHHHHHHHHhcC------CeEEEEeCCc
Q 028644 35 ALDLGQELVSKKL-DLVYGGGSVGLMGLVSHVVHRGG------GHVLGIIPKT 80 (206)
Q Consensus 35 A~~lG~~lA~~g~-~lv~GGg~~GlM~a~~~ga~~~g------G~viGv~P~~ 80 (206)
|+++.+.++..++ .||.-||. |....+..|-.... ...+||||..
T Consensus 157 A~~la~~~~~~~~D~VV~vGGD-GTlnEVvNGL~~~~~~~~~~~~pLGiIPaG 208 (481)
T PLN02958 157 AKEVVRTMDLSKYDGIVCVSGD-GILVEVVNGLLEREDWKTAIKLPIGMVPAG 208 (481)
T ss_pred HHHHHHHhhhcCCCEEEEEcCC-CHHHHHHHHHhhCccccccccCceEEecCc
Confidence 4455566655665 56777777 99999999987542 3569999953
No 92
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=54.00 E-value=33 Score=31.77 Aligned_cols=49 Identities=18% Similarity=0.193 Sum_probs=34.1
Q ss_pred CCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEec-----CccchhHHHHHHH
Q 028644 111 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV-----DGYYNSLLNFIDK 161 (206)
Q Consensus 111 sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~-----~g~w~~l~~~l~~ 161 (206)
.|+|||..| .-||+|-..++.++--. .+|||||.+. .--.|...+++..
T Consensus 140 ~dGvVVtHG-TDTM~yTA~aLs~~l~~-~~kPVVlTGAqrp~~~~~sDa~~NL~~A 193 (404)
T TIGR02153 140 ADGVVVAHG-TDTMAYTAAALSFMFET-LPVPVVLVGAQRSSDRPSSDAALNLICA 193 (404)
T ss_pred CCcEEEecC-ChhHHHHHHHHHHHhhC-CCCCEEEECCCCCCCCCCchHHHHHHHH
Confidence 799999986 89999999888765422 3899999763 1133455555543
No 93
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=53.73 E-value=42 Score=25.60 Aligned_cols=40 Identities=25% Similarity=0.462 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHH----CCCe-EEE--cCCc-cChhHHHHHHHHhcCC
Q 028644 32 RDAALDLGQELVS----KKLD-LVY--GGGS-VGLMGLVSHVVHRGGG 71 (206)
Q Consensus 32 ~~~A~~lG~~lA~----~g~~-lv~--GGg~-~GlM~a~~~ga~~~gG 71 (206)
.+.|..+|+.||+ .|+. +++ ||.. -|-+.|+++++.++|-
T Consensus 65 ~~aA~~vG~~la~ra~~~gi~~vvfDrgg~~YhGrv~A~a~~aRe~Gl 112 (114)
T TIGR00060 65 KDAAKKVGKLVAERLKEKGIKDVVFDRGGYKYHGRVAALAEAAREAGL 112 (114)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcchHHHHHHHHHHHHhCC
Confidence 5788889999887 4653 232 3322 5899999999999873
No 94
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=53.64 E-value=1.4e+02 Score=25.89 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=19.1
Q ss_pred CCeEEEcCCccChhHHHHHHHHhcCC-eEEEEe
Q 028644 46 KLDLVYGGGSVGLMGLVSHVVHRGGG-HVLGII 77 (206)
Q Consensus 46 g~~lv~GGg~~GlM~a~~~ga~~~gG-~viGv~ 77 (206)
...+|+|+|+.|+|- ..-|+..|. +++.+.
T Consensus 171 ~~VlV~G~G~vG~~a--iqlak~~G~~~Vi~~~ 201 (343)
T PRK09880 171 KRVFVSGVGPIGCLI--VAAVKTLGAAEIVCAD 201 (343)
T ss_pred CEEEEECCCHHHHHH--HHHHHHcCCcEEEEEe
Confidence 457788877666654 455666776 566663
No 95
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=53.41 E-value=23 Score=29.15 Aligned_cols=81 Identities=15% Similarity=0.109 Sum_probs=51.8
Q ss_pred hCCeeEEecCCcCcHHHHHHHHHHH-------HhCCCCccEEEEecCccchhH--HHHHHHHHHcCCC-CccccCcEEEc
Q 028644 110 NSDCFIALPGGYGTLEELLEVITWA-------QLGIHDKPVGLINVDGYYNSL--LNFIDKAVDDGFI-SPSQRSILVSA 179 (206)
Q Consensus 110 ~sDa~IvlpGG~GTL~El~~~~~~~-------~~g~~~kPiill~~~g~w~~l--~~~l~~~~~~gfi-~~~~~~~i~~~ 179 (206)
.+|++|+.|=..+|+.-+..-++-. ..-..++|+++.-. ..|..- ++-++.+.+.|+. =+.....+.--
T Consensus 78 ~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~-~M~~~p~~~~Nl~~L~~~G~~vi~P~~g~~a~p 156 (185)
T PRK06029 78 GTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVR-ETPLHLGHLRNMTKLAEMGAIIMPPVPAFYHRP 156 (185)
T ss_pred hhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEec-cccCCHHHHHHHHHHHHCcCEEECCCcccccCC
Confidence 4799999999999998775422111 11136799998865 477643 3335566676742 22233445556
Q ss_pred CCHHHHHHHhHh
Q 028644 180 PNAKELVQKLEV 191 (206)
Q Consensus 180 ~~~ee~~~~l~~ 191 (206)
.+.+|+++++..
T Consensus 157 ~~~~~~~~~~v~ 168 (185)
T PRK06029 157 QTLEDMVDQTVG 168 (185)
T ss_pred CCHHHHHHHHHH
Confidence 889999988754
No 96
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=52.85 E-value=35 Score=31.52 Aligned_cols=84 Identities=21% Similarity=0.375 Sum_probs=51.1
Q ss_pred CeEEEcCCccChhHHHHHHHHh--------------------cCCeEEEEeCCcccccccCCCCCceeeccCCHHHHHHH
Q 028644 47 LDLVYGGGSVGLMGLVSHVVHR--------------------GGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAE 106 (206)
Q Consensus 47 ~~lv~GGg~~GlM~a~~~ga~~--------------------~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~ 106 (206)
+.|-+|-|| |+.+--.+-+.+ .+|.+.||--+.+.|.....-....-.++.+|.
T Consensus 141 FHiTWGTGP-gvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~GdFe----- 214 (552)
T COG3573 141 FHITWGTGP-GVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGDFE----- 214 (552)
T ss_pred eEEeecCCc-chhhHHHHHHHHHHhCCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecceE-----
Confidence 578899998 999888776665 356777775444444322111111112233332
Q ss_pred HHhhCCeeEEecCCcCcHHHHHHH-HHHHHhCC
Q 028644 107 MARNSDCFIALPGGYGTLEELLEV-ITWAQLGI 138 (206)
Q Consensus 107 m~~~sDa~IvlpGG~GTL~El~~~-~~~~~~g~ 138 (206)
-++.++|+-.||+|-=.|+.-- |--..+|.
T Consensus 215 --f~A~aviv~SGGIGGnhelVRrnWP~eRlG~ 245 (552)
T COG3573 215 --FSASAVIVASGGIGGNHELVRRNWPTERLGR 245 (552)
T ss_pred --EeeeeEEEecCCcCCCHHHHHhcCchhhcCC
Confidence 3688999999999998888643 32234443
No 97
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=52.81 E-value=16 Score=27.52 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=28.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (206)
|+|+|++|......+.=...|+.+-+.|.+.+|.++
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~~~y~v~ 36 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDKEKYEVI 36 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHTTTEEEE
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhhhcceEE
Confidence 577777777666566667899999999999999887
No 98
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=52.70 E-value=56 Score=24.88 Aligned_cols=72 Identities=25% Similarity=0.410 Sum_probs=43.8
Q ss_pred HHHHHHHHhhCCeeEEecC--CcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEE
Q 028644 101 HQRKAEMARNSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 178 (206)
Q Consensus 101 ~~Rk~~m~~~sDa~IvlpG--G~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~ 178 (206)
.+....++..||++|...- |+|+ =+.|++ ..++|++.-+.. .+.. .+.++ ....++-
T Consensus 83 ~~~l~~~~~~~di~v~~s~~e~~~~--~~~Ea~------~~g~pvI~~~~~-~~~e-------~~~~~-----~~g~~~~ 141 (172)
T PF00534_consen 83 DDELDELYKSSDIFVSPSRNEGFGL--SLLEAM------ACGCPVIASDIG-GNNE-------IINDG-----VNGFLFD 141 (172)
T ss_dssp HHHHHHHHHHTSEEEE-BSSBSS-H--HHHHHH------HTT-EEEEESST-HHHH-------HSGTT-----TSEEEES
T ss_pred ccccccccccceecccccccccccc--cccccc------ccccceeecccc-CCce-------eeccc-----cceEEeC
Confidence 4456678888999998854 3333 366666 378999987754 2222 22221 2334555
Q ss_pred cCCHHHHHHHhHhcc
Q 028644 179 APNAKELVQKLEVGF 193 (206)
Q Consensus 179 ~~~~ee~~~~l~~~~ 193 (206)
..|++++.+.|.+..
T Consensus 142 ~~~~~~l~~~i~~~l 156 (172)
T PF00534_consen 142 PNDIEELADAIEKLL 156 (172)
T ss_dssp TTSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 678899999988765
No 99
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=52.62 E-value=27 Score=31.14 Aligned_cols=28 Identities=18% Similarity=0.087 Sum_probs=17.4
Q ss_pred eeeccCCHHHHHHHHHhhCCeeEEecCC
Q 028644 93 EVKPVADMHQRKAEMARNSDCFIALPGG 120 (206)
Q Consensus 93 ~~~~~~~~~~Rk~~m~~~sDa~IvlpGG 120 (206)
+-++-+|+..-+---.-.||.+|+|..-
T Consensus 208 eAVIDKDlasalLA~~i~AD~liILTdV 235 (312)
T COG0549 208 EAVIDKDLASALLAEQIDADLLIILTDV 235 (312)
T ss_pred eEEEccHHHHHHHHHHhcCCEEEEEecc
Confidence 3455667754333333479999999764
No 100
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=51.80 E-value=65 Score=28.09 Aligned_cols=59 Identities=19% Similarity=0.243 Sum_probs=39.3
Q ss_pred CCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCe--EEEEe
Q 028644 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGH--VLGII 77 (206)
Q Consensus 13 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~--viGv~ 77 (206)
..+....+-++.. |+ ..++++++.|-.+|..+|+.-+. +.-..+.+.|.+.|.. +||+-
T Consensus 160 ~i~v~~~~~gs~~--D~---~~~~~~a~~li~~GaDvI~~~ag-~~~~gv~~aa~e~g~~~~~IG~d 220 (306)
T PF02608_consen 160 DIKVNVSYTGSFN--DP---AKAKEAAEALIDQGADVIFPVAG-GSGQGVIQAAKEAGVYGYVIGVD 220 (306)
T ss_dssp T-EEEEEE-SSSS---H---HHHHHHHHHHHHTT-SEEEEE-C-CCHHHHHHHHHHHTHETEEEEEE
T ss_pred CceEEEEEcCCcC--ch---HHHHHHHHHHhhcCCeEEEECCC-CCchHHHHHHHHcCCceEEEEec
Confidence 3344455555443 44 46788889999999999999443 5566677788888877 99984
No 101
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=51.58 E-value=1.7e+02 Score=25.76 Aligned_cols=132 Identities=19% Similarity=0.202 Sum_probs=67.9
Q ss_pred HCCCeEEEcCCc--cChhHHHHHHHHhcC-CeEEEEeCCcccccccCCCCCceeecc--CCHH-HHHHHHHhhCCeeEEe
Q 028644 44 SKKLDLVYGGGS--VGLMGLVSHVVHRGG-GHVLGIIPKTLMNKEITGETVGEVKPV--ADMH-QRKAEMARNSDCFIAL 117 (206)
Q Consensus 44 ~~g~~lv~GGg~--~GlM~a~~~ga~~~g-G~viGv~P~~~~~~e~~~~~~~~~~~~--~~~~-~Rk~~m~~~sDa~Ivl 117 (206)
++|..+|-||.. .|-.--++.+|..+| |.|.=..|..... .. .....+++.. .+.. ..+..+.+..|++++=
T Consensus 31 ~~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~~~~-~~-~s~~Pe~mv~~~~~~~~~~~~~~~~~~~avviG 108 (284)
T COG0063 31 DYGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAAS-AL-KSYLPELMVIEVEGKKLLEERELVERADAVVIG 108 (284)
T ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchhhhh-hH-hhcCcceeEeecccchhhHHhhhhccCCEEEEC
Confidence 368888888863 466667778888887 4544444542111 11 1111233322 2222 2233566778877654
Q ss_pred cCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHhH
Q 028644 118 PGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLE 190 (206)
Q Consensus 118 pGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~ 190 (206)
-|.|.-+|..++....-.... +|+++ +-|+.+ .+ .+..... ....++++..+-|..+.+.
T Consensus 109 -pGlG~~~~~~~~~~~~l~~~~-~p~Vi-DADaL~-----~l---a~~~~~~--~~~~~VlTPH~gEf~rL~g 168 (284)
T COG0063 109 -PGLGRDAEGQEALKELLSSDL-KPLVL-DADALN-----LL---AELPDLL--DERKVVLTPHPGEFARLLG 168 (284)
T ss_pred -CCCCCCHHHHHHHHHHHhccC-CCEEE-eCcHHH-----HH---HhCcccc--cCCcEEECCCHHHHHHhcC
Confidence 468888776666543322222 89875 555432 11 1111111 1112677777777766553
No 102
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=51.47 E-value=2.1e+02 Score=26.65 Aligned_cols=141 Identities=15% Similarity=0.182 Sum_probs=70.4
Q ss_pred HHHHHHH------CCCeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCc------ccc-cccCCCCCceeeccC--CHHH
Q 028644 38 LGQELVS------KKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKT------LMN-KEITGETVGEVKPVA--DMHQ 102 (206)
Q Consensus 38 lG~~lA~------~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~------~~~-~e~~~~~~~~~~~~~--~~~~ 102 (206)
+.+.|+. ++..+|+.+| |.-..+++.+.+.|..+--..|.. .+| .....|+++-.-..+ .+..
T Consensus 283 ~~~~l~~~~~~~g~rvaivs~sG--G~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NPlDl~~~~~~~~~~~ 360 (447)
T TIGR02717 283 LARLLSNQPLPKGNRVAIITNAG--GPGVIATDACEENGLELAELSEATKNKLRNILPPEASIKNPVDVLGDATPERYAK 360 (447)
T ss_pred HHHHHhcCCCCCCCeEEEEECCc--hHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCCEecCCCCCHHHHHH
Confidence 4556663 4677788776 666678888888776532211100 011 112245554211111 1122
Q ss_pred HHHHHHh--hCCeeEEe--cCCcCcHHHHHHHHHHHHhCCC-CccEEEEecCccc-hhHHHHHHHHHHcCCCCccccCcE
Q 028644 103 RKAEMAR--NSDCFIAL--PGGYGTLEELLEVITWAQLGIH-DKPVGLINVDGYY-NSLLNFIDKAVDDGFISPSQRSIL 176 (206)
Q Consensus 103 Rk~~m~~--~sDa~Ivl--pGG~GTL~El~~~~~~~~~g~~-~kPiill~~~g~w-~~l~~~l~~~~~~gfi~~~~~~~i 176 (206)
=-+.+++ ..|+++++ |++....+++.+++.-.. ..+ +||++....++.. +... +.+.+.| +
T Consensus 361 al~~l~~dp~vd~Vlv~~~~~~~~~~~~~a~~l~~~~-~~~~~KPvv~~~~gg~~~~~~~---~~L~~~G---------i 427 (447)
T TIGR02717 361 ALKTVAEDENVDGVVVVLTPTAMTDPEEVAKGIIEGA-KKSNEKPVVAGFMGGKSVDPAK---RILEENG---------I 427 (447)
T ss_pred HHHHHHcCCCCCEEEEEccCCccCCHHHHHHHHHHHH-HhcCCCcEEEEecCCccHHHHH---HHHHhCC---------C
Confidence 2223332 34676654 455555566666654321 224 7999554332211 1122 2233333 5
Q ss_pred EEcCCHHHHHHHhHhcc
Q 028644 177 VSAPNAKELVQKLEVGF 193 (206)
Q Consensus 177 ~~~~~~ee~~~~l~~~~ 193 (206)
.+.++++++++.+....
T Consensus 428 p~f~~p~~A~~al~~~~ 444 (447)
T TIGR02717 428 PNYTFPERAVKALSALY 444 (447)
T ss_pred CccCCHHHHHHHHHHHH
Confidence 67899999999886543
No 103
>PRK13057 putative lipid kinase; Reviewed
Probab=51.39 E-value=33 Score=29.54 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=29.2
Q ss_pred HHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCc
Q 028644 35 ALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKT 80 (206)
Q Consensus 35 A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~ 80 (206)
|.++.+.+.+.--.|+..||. |....++.+.... +..+||+|..
T Consensus 40 a~~~~~~~~~~~d~iiv~GGD-GTv~~v~~~l~~~-~~~lgiiP~G 83 (287)
T PRK13057 40 LSEVIEAYADGVDLVIVGGGD-GTLNAAAPALVET-GLPLGILPLG 83 (287)
T ss_pred HHHHHHHHHcCCCEEEEECch-HHHHHHHHHHhcC-CCcEEEECCC
Confidence 344444433332356667776 9999999988754 5679999953
No 104
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=51.03 E-value=61 Score=27.09 Aligned_cols=72 Identities=13% Similarity=0.074 Sum_probs=43.6
Q ss_pred HHHHHHhhCCeeEEecC-----CcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEE
Q 028644 103 RKAEMARNSDCFIALPG-----GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 177 (206)
Q Consensus 103 Rk~~m~~~sDa~IvlpG-----G~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~ 177 (206)
...-++..||++|.... |.+.-.=+.|++ ..++|++..+..+.-+.+ .+ .....++
T Consensus 287 ~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~------~~G~pvi~~~~~~~~~~~--------~~-----~~~g~~~ 347 (394)
T cd03794 287 ELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYM------AAGKPVLASVDGESAELV--------EE-----AGAGLVV 347 (394)
T ss_pred HHHHHHHhhCeeEEeccCcccccccCchHHHHHH------HCCCcEEEecCCCchhhh--------cc-----CCcceEe
Confidence 44456788999886533 333334466777 478999988765432211 11 1222344
Q ss_pred EcCCHHHHHHHhHhcc
Q 028644 178 SAPNAKELVQKLEVGF 193 (206)
Q Consensus 178 ~~~~~ee~~~~l~~~~ 193 (206)
-.+|++++.+.|.+..
T Consensus 348 ~~~~~~~l~~~i~~~~ 363 (394)
T cd03794 348 PPGDPEALAAAILELL 363 (394)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4558999998888775
No 105
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=51.01 E-value=52 Score=29.81 Aligned_cols=139 Identities=20% Similarity=0.260 Sum_probs=74.9
Q ss_pred CCeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCcccccccCCCC-CceeeccCCHHHHHHHHHhhCCeeEEecCCcCcH
Q 028644 46 KLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGET-VGEVKPVADMHQRKAEMARNSDCFIALPGGYGTL 124 (206)
Q Consensus 46 g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~-~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL 124 (206)
.+..|+|.| ||=-.+.+=|+..|.+|+++.-+.. ..+.+..- .+..+... -.+.....-+..|++|..-+ .=|+
T Consensus 168 ~~V~I~G~G--GlGh~avQ~Aka~ga~Via~~~~~~-K~e~a~~lGAd~~i~~~-~~~~~~~~~~~~d~ii~tv~-~~~~ 242 (339)
T COG1064 168 KWVAVVGAG--GLGHMAVQYAKAMGAEVIAITRSEE-KLELAKKLGADHVINSS-DSDALEAVKEIADAIIDTVG-PATL 242 (339)
T ss_pred CEEEEECCc--HHHHHHHHHHHHcCCeEEEEeCChH-HHHHHHHhCCcEEEEcC-CchhhHHhHhhCcEEEECCC-hhhH
Confidence 467799998 5555567778888999999943221 11111111 12223322 22222222233999999999 8888
Q ss_pred HHHHHHHHHH----HhCCCC-ccEE-------EEe------c-CccchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHH
Q 028644 125 EELLEVITWA----QLGIHD-KPVG-------LIN------V-DGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKEL 185 (206)
Q Consensus 125 ~El~~~~~~~----~~g~~~-kPii-------ll~------~-~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~ 185 (206)
+....++... +.|... .|+. +++ . .|=-.++.++|+ +..+|-|.+... ..+-.++..|+
T Consensus 243 ~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~-f~~~g~Ikp~i~-e~~~l~~in~A 320 (339)
T COG1064 243 EPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEALD-FAAEGKIKPEIL-ETIPLDEINEA 320 (339)
T ss_pred HHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCCHHHHHHHHH-HHHhCCceeeEE-eeECHHHHHHH
Confidence 8877766432 123331 2211 111 0 122334555553 566777765554 23445677788
Q ss_pred HHHhHh
Q 028644 186 VQKLEV 191 (206)
Q Consensus 186 ~~~l~~ 191 (206)
++.+++
T Consensus 321 ~~~m~~ 326 (339)
T COG1064 321 YERMEK 326 (339)
T ss_pred HHHHHc
Confidence 887765
No 106
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=50.71 E-value=25 Score=28.66 Aligned_cols=83 Identities=17% Similarity=0.258 Sum_probs=49.4
Q ss_pred hhCCeeEEecCCcCcHHHHHHHHHHH-----HhC-CCCccEEEE---ecCccchh--HHHHHHHHHHcCC--CCccccCc
Q 028644 109 RNSDCFIALPGGYGTLEELLEVITWA-----QLG-IHDKPVGLI---NVDGYYNS--LLNFIDKAVDDGF--ISPSQRSI 175 (206)
Q Consensus 109 ~~sDa~IvlpGG~GTL~El~~~~~~~-----~~g-~~~kPiill---~~~g~w~~--l~~~l~~~~~~gf--i~~~~~~~ 175 (206)
..+|++|+.|=..+|+.-+..-++-. -+. ..++|+++. |. .+|+. ..+-++.+.+.|+ ++++....
T Consensus 75 ~~aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~-~M~~~p~~~~nl~~L~~~G~~vi~P~~g~l 153 (177)
T TIGR02113 75 KKADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNT-KMYQNPITQRNIKILKKIGYQEIQPKESLL 153 (177)
T ss_pred hhhCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCH-HHhCCHHHHHHHHHHHHCCCEEECCCcCcc
Confidence 36899999999999988775432111 111 247899986 34 47863 3344566666663 33333111
Q ss_pred ------EEEcCCHHHHHHHhHhc
Q 028644 176 ------LVSAPNAKELVQKLEVG 192 (206)
Q Consensus 176 ------i~~~~~~ee~~~~l~~~ 192 (206)
.=-..+++++++.+.++
T Consensus 154 a~g~~g~g~~~~~~~i~~~~~~~ 176 (177)
T TIGR02113 154 ACGDYGRGALADLDDILQTIKEI 176 (177)
T ss_pred cCCCccccCCCCHHHHHHHHHHh
Confidence 11134678888887654
No 107
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=50.37 E-value=74 Score=26.95 Aligned_cols=70 Identities=16% Similarity=0.271 Sum_probs=41.9
Q ss_pred HHHHHHhhCCeeEEec--CCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcC
Q 028644 103 RKAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 180 (206)
Q Consensus 103 Rk~~m~~~sDa~Ivlp--GG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 180 (206)
....++..||++|.-. .|+|. =+.|++ ..++|++..+..+.- .+ +.......+.-.+
T Consensus 257 ~~~~~~~~ad~~l~ps~~e~~g~--~~~Eam------~~g~PvI~~~~~~~~-e~------------~~~~~~g~~~~~~ 315 (365)
T cd03825 257 SLALIYSAADVFVVPSLQENFPN--TAIEAL------ACGTPVVAFDVGGIP-DI------------VDHGVTGYLAKPG 315 (365)
T ss_pred HHHHHHHhCCEEEeccccccccH--HHHHHH------hcCCCEEEecCCCCh-hh------------eeCCCceEEeCCC
Confidence 4456788999987743 33443 256666 478999988765432 11 1111222334445
Q ss_pred CHHHHHHHhHhcc
Q 028644 181 NAKELVQKLEVGF 193 (206)
Q Consensus 181 ~~ee~~~~l~~~~ 193 (206)
|++++.+.|.+..
T Consensus 316 ~~~~~~~~l~~l~ 328 (365)
T cd03825 316 DPEDLAEGIEWLL 328 (365)
T ss_pred CHHHHHHHHHHHH
Confidence 7888888887765
No 108
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=50.27 E-value=54 Score=28.24 Aligned_cols=72 Identities=14% Similarity=0.160 Sum_probs=45.7
Q ss_pred HHHHHHHhhCCeeEEec-CCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcC
Q 028644 102 QRKAEMARNSDCFIALP-GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 180 (206)
Q Consensus 102 ~Rk~~m~~~sDa~Ivlp-GG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 180 (206)
+....++..||++|... -|+|.. +.|++ ..++||+..+.+| +..++ .+.....++-.+
T Consensus 253 ~~~~~~~~~ad~~v~ps~e~~g~~--~~Eam------a~G~Pvi~~~~~~-~~e~i------------~~~~~G~~~~~~ 311 (351)
T cd03804 253 EELRDLYARARAFLFPAEEDFGIV--PVEAM------ASGTPVIAYGKGG-ALETV------------IDGVTGILFEEQ 311 (351)
T ss_pred HHHHHHHHhCCEEEECCcCCCCch--HHHHH------HcCCCEEEeCCCC-Cccee------------eCCCCEEEeCCC
Confidence 34556788999988643 566765 46777 4789999987654 22221 111223344467
Q ss_pred CHHHHHHHhHhccC
Q 028644 181 NAKELVQKLEVGFL 194 (206)
Q Consensus 181 ~~ee~~~~l~~~~~ 194 (206)
|++++.+.|.++..
T Consensus 312 ~~~~la~~i~~l~~ 325 (351)
T cd03804 312 TVESLAAAVERFEK 325 (351)
T ss_pred CHHHHHHHHHHHHh
Confidence 89998888877653
No 109
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=50.03 E-value=74 Score=27.23 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=23.4
Q ss_pred HHhhCCeeEEecCCcCcHHHHH--HHHHHHH-hCCCCccEEEEecCcc
Q 028644 107 MARNSDCFIALPGGYGTLEELL--EVITWAQ-LGIHDKPVGLINVDGY 151 (206)
Q Consensus 107 m~~~sDa~IvlpGG~GTL~El~--~~~~~~~-~g~~~kPiill~~~g~ 151 (206)
++..+|++++ +.||+.+-. .+....+ ...+++|+| ++..+.
T Consensus 51 ~~~~~~alvi---~~G~l~~~~~~~i~~~~~~a~~~~~pvV-lDpv~~ 94 (263)
T PRK09355 51 MAKIAGALVI---NIGTLTEERIEAMLAAGKIANEAGKPVV-LDPVGV 94 (263)
T ss_pred HHHhcCceEE---eCCCCCHHHHHHHHHHHHHHHhcCCCEE-ECCccc
Confidence 4578899998 555554432 2232222 224578975 676654
No 110
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=49.97 E-value=49 Score=27.83 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=41.9
Q ss_pred HHHHHHHhhCCeeEEec--C--Cc-CcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcE
Q 028644 102 QRKAEMARNSDCFIALP--G--GY-GTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSIL 176 (206)
Q Consensus 102 ~Rk~~m~~~sDa~Ivlp--G--G~-GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i 176 (206)
+....++..||++|.-. . |+ ++ +.|++ ..++||+..+..+ .+.+. ......+
T Consensus 259 ~~~~~~~~~ad~~v~ps~~e~~~~~~~---~~Ea~------a~G~PvI~~~~~~-~~~i~-------------~~~~g~~ 315 (366)
T cd03822 259 EELPELFSAADVVVLPYRSADQTQSGV---LAYAI------GFGKPVISTPVGH-AEEVL-------------DGGTGLL 315 (366)
T ss_pred HHHHHHHhhcCEEEecccccccccchH---HHHHH------HcCCCEEecCCCC-hheee-------------eCCCcEE
Confidence 34556778899987532 1 33 34 44555 3689999877654 22221 1222334
Q ss_pred EEcCCHHHHHHHhHhccC
Q 028644 177 VSAPNAKELVQKLEVGFL 194 (206)
Q Consensus 177 ~~~~~~ee~~~~l~~~~~ 194 (206)
+-.+|++++.+.|.+...
T Consensus 316 ~~~~d~~~~~~~l~~l~~ 333 (366)
T cd03822 316 VPPGDPAALAEAIRRLLA 333 (366)
T ss_pred EcCCCHHHHHHHHHHHHc
Confidence 445678999988877654
No 111
>PRK13937 phosphoheptose isomerase; Provisional
Probab=49.55 E-value=58 Score=26.37 Aligned_cols=32 Identities=19% Similarity=0.112 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHHHHHHCCCeEEEcCCccChh
Q 028644 28 RNCYRDAALDLGQELVSKKLDLVYGGGSVGLM 59 (206)
Q Consensus 28 ~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM 59 (206)
.+...+.|+++.+.|.+.+...++|-|..+..
T Consensus 21 ~~~l~~aa~~i~~~l~~a~rI~i~G~G~S~~~ 52 (188)
T PRK13937 21 LEAIAKVAEALIEALANGGKILLCGNGGSAAD 52 (188)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHhHHH
Confidence 36777899999999999999999999875553
No 112
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.40 E-value=1.1e+02 Score=26.95 Aligned_cols=62 Identities=24% Similarity=0.186 Sum_probs=38.7
Q ss_pred cCCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe------------------------------EEEcCCccChhH
Q 028644 11 MSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLD------------------------------LVYGGGSVGLMG 60 (206)
Q Consensus 11 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~------------------------------lv~GGg~~GlM~ 60 (206)
.+.+++|+|+.- .. ++...+.+.++.++|.++|+. +++=||. |-+-
T Consensus 2 ~~~~~~i~iv~~--~~-~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGD-GT~L 77 (292)
T PRK03378 2 NNHFKCIGIVGH--PR-HPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGD-GNML 77 (292)
T ss_pred CccCCEEEEEEe--CC-CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCc-HHHH
Confidence 455778999943 22 355557778888877655532 2334455 7776
Q ss_pred HHHHHHHhcCCeEEEE
Q 028644 61 LVSHVVHRGGGHVLGI 76 (206)
Q Consensus 61 a~~~ga~~~gG~viGv 76 (206)
.+++.+...+-.++||
T Consensus 78 ~aa~~~~~~~~Pilgi 93 (292)
T PRK03378 78 GAARVLARYDIKVIGI 93 (292)
T ss_pred HHHHHhcCCCCeEEEE
Confidence 6666665555567777
No 113
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=49.23 E-value=1.2e+02 Score=25.76 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEE
Q 028644 33 DAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 33 ~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 76 (206)
+.++++++.|-.+|..+|+..+ .|. .+.+.|.+.|..+||+
T Consensus 166 ~~a~~~a~~l~~~G~DvI~~~~-~~~--g~~~aa~~~g~~~IG~ 206 (258)
T cd06353 166 AKEKEAALALIDQGADVIYQHT-DSP--GVIQAAEEKGVYAIGY 206 (258)
T ss_pred HHHHHHHHHHHHCCCcEEEecC-CCh--HHHHHHHHhCCEEEee
Confidence 3556777777788999998886 242 4556677889999998
No 114
>PRK12359 flavodoxin FldB; Provisional
Probab=49.13 E-value=59 Score=26.35 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=17.1
Q ss_pred CceEEEEcCCCC-CCChHHHHHHHHHHHHHHHCCCeEE
Q 028644 14 FKRVCVFCGSST-GKRNCYRDAALDLGQELVSKKLDLV 50 (206)
Q Consensus 14 ~~~I~Vfggs~~-~~~~~~~~~A~~lG~~lA~~g~~lv 50 (206)
-++|+|||.... +..+.|...+..+-+.|.+.|..+|
T Consensus 79 gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~iv 116 (172)
T PRK12359 79 GKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFV 116 (172)
T ss_pred CCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEE
Confidence 345555543222 1123344455555555555555544
No 115
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=49.05 E-value=37 Score=27.71 Aligned_cols=80 Identities=10% Similarity=0.076 Sum_probs=49.2
Q ss_pred hCCeeEEecCCcCcHHHHHHHHHHH-------HhCCCCccEEEEecCccchhH--HHHHHHHHHcCC--CCccccCcEEE
Q 028644 110 NSDCFIALPGGYGTLEELLEVITWA-------QLGIHDKPVGLINVDGYYNSL--LNFIDKAVDDGF--ISPSQRSILVS 178 (206)
Q Consensus 110 ~sDa~IvlpGG~GTL~El~~~~~~~-------~~g~~~kPiill~~~g~w~~l--~~~l~~~~~~gf--i~~~~~~~i~~ 178 (206)
.+|++|+.|=..+|+.-+..=++-. ..-..++|+++.-.+ .|..- ++-++.+.+.|+ +++ ....+.-
T Consensus 75 ~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~~-m~~~~~~~~Nl~~L~~~G~~ii~P-~~g~~~~ 152 (181)
T TIGR00421 75 PFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPRE-TPLNSIHLENMLRLSRMGAIILPP-MPAFYTR 152 (181)
T ss_pred hhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeCC-CcCCHHHHHHHHHHHHCCCEEECC-CCcccCC
Confidence 4899999999999998875422100 111367999988654 55432 222345666663 333 2344555
Q ss_pred cCCHHHHHHHhHh
Q 028644 179 APNAKELVQKLEV 191 (206)
Q Consensus 179 ~~~~ee~~~~l~~ 191 (206)
-.+++|+++++..
T Consensus 153 p~~~~~~~~~i~~ 165 (181)
T TIGR00421 153 PKSVEDMIDFIVG 165 (181)
T ss_pred CCCHHHHHHHHHH
Confidence 6899997777654
No 116
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.96 E-value=1.1e+02 Score=27.06 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=38.6
Q ss_pred CCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE-----------------------------------EEcCCcc
Q 028644 12 SRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL-----------------------------------VYGGGSV 56 (206)
Q Consensus 12 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~l-----------------------------------v~GGg~~ 56 (206)
+.+++|+|+.-.. ++...+.+.++.++|.++|+.+ ++=||.
T Consensus 3 ~~~~~i~ii~~~~---~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGD- 78 (296)
T PRK04539 3 SPFHNIGIVTRPN---TPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGD- 78 (296)
T ss_pred CCCCEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECCc-
Confidence 3467899994322 3556677888888887665432 233444
Q ss_pred ChhHHHHHHHHhcCCeEEEE
Q 028644 57 GLMGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 57 GlM~a~~~ga~~~gG~viGv 76 (206)
|-|=.+++-+...+-.++||
T Consensus 79 GT~L~aa~~~~~~~~PilGI 98 (296)
T PRK04539 79 GTFLSVAREIAPRAVPIIGI 98 (296)
T ss_pred HHHHHHHHHhcccCCCEEEE
Confidence 77766666665556677787
No 117
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=48.78 E-value=70 Score=27.31 Aligned_cols=33 Identities=33% Similarity=0.606 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHH
Q 028644 123 TLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNF 158 (206)
Q Consensus 123 TL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~ 158 (206)
||+.+++......-.-...||+|+ |||+|+++.
T Consensus 78 tl~~i~emvk~ar~~gvt~PIiLm---gYYNPIl~y 110 (268)
T KOG4175|consen 78 TLNSIIEMVKEARPQGVTCPIILM---GYYNPILRY 110 (268)
T ss_pred cHHHHHHHHHHhcccCcccceeee---ecccHHHhh
Confidence 788888887655433346899998 599998875
No 118
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=48.43 E-value=1.2e+02 Score=27.98 Aligned_cols=80 Identities=15% Similarity=0.302 Sum_probs=47.0
Q ss_pred CHHHHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEec-CccchhHHHHHHHHHHcCCCCccccCcEE
Q 028644 99 DMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV-DGYYNSLLNFIDKAVDDGFISPSQRSILV 177 (206)
Q Consensus 99 ~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~-~g~w~~l~~~l~~~~~~gfi~~~~~~~i~ 177 (206)
.|..|-..++..||.+|.+ ||+.|.=|| + ..+||-+++-. .+--+.+++ .+++.+-|.++.=..+.+.
T Consensus 283 ~f~~~~~~ll~gA~~vVSm-~GYNTvCeI---L------s~~k~aLivPr~~p~eEQliR-A~Rl~~LGL~dvL~pe~lt 351 (400)
T COG4671 283 EFRNDFESLLAGARLVVSM-GGYNTVCEI---L------SFGKPALIVPRAAPREEQLIR-AQRLEELGLVDVLLPENLT 351 (400)
T ss_pred EhhhhHHHHHHhhheeeec-ccchhhhHH---H------hCCCceEEeccCCCcHHHHHH-HHHHHhcCcceeeCcccCC
Confidence 4455666778888888877 678886555 4 36788887742 222234333 1346666766543333332
Q ss_pred EcCCHHHHHHHhHhcc
Q 028644 178 SAPNAKELVQKLEVGF 193 (206)
Q Consensus 178 ~~~~~ee~~~~l~~~~ 193 (206)
++.+.++|+...
T Consensus 352 ----~~~La~al~~~l 363 (400)
T COG4671 352 ----PQNLADALKAAL 363 (400)
T ss_pred ----hHHHHHHHHhcc
Confidence 556666665544
No 119
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=48.29 E-value=47 Score=27.30 Aligned_cols=69 Identities=20% Similarity=0.372 Sum_probs=40.5
Q ss_pred HHHHHhhCCeeEEec--CCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCC
Q 028644 104 KAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 181 (206)
Q Consensus 104 k~~m~~~sDa~Ivlp--GG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~ 181 (206)
...++..||++|... .|+|+- ++|++ ..++|++..+..++ ..++ + ......++-.+|
T Consensus 269 ~~~~~~~~di~i~~~~~~~~~~~--~~Ea~------~~g~pvI~~~~~~~-~~~~-------~-----~~~~g~~~~~~~ 327 (374)
T cd03801 269 LPALYAAADVFVLPSLYEGFGLV--LLEAM------AAGLPVVASDVGGI-PEVV-------E-----DGETGLLVPPGD 327 (374)
T ss_pred HHHHHHhcCEEEecchhccccch--HHHHH------HcCCcEEEeCCCCh-hHHh-------c-----CCcceEEeCCCC
Confidence 445667899877653 233332 55666 46899998876432 2211 1 112233444556
Q ss_pred HHHHHHHhHhcc
Q 028644 182 AKELVQKLEVGF 193 (206)
Q Consensus 182 ~ee~~~~l~~~~ 193 (206)
++++.+.|.+..
T Consensus 328 ~~~l~~~i~~~~ 339 (374)
T cd03801 328 PEALAEAILRLL 339 (374)
T ss_pred HHHHHHHHHHHH
Confidence 899999888764
No 120
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=48.22 E-value=30 Score=30.84 Aligned_cols=36 Identities=31% Similarity=0.315 Sum_probs=27.5
Q ss_pred hCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEe
Q 028644 110 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 147 (206)
Q Consensus 110 ~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~ 147 (206)
..|+|||+.| .-||+|-...+.+.- .-.+||||+-+
T Consensus 77 ~~dG~VVtHG-TDTmeeTA~~Ls~~l-~~l~kPVVlTG 112 (323)
T smart00870 77 GYDGVVVTHG-TDTLEETAYFLSLTL-DSLDKPVVLTG 112 (323)
T ss_pred CCCEEEEecC-CccHHHHHHHHHHHh-hcCCCCEEEEC
Confidence 4689998875 899999998886532 22379999974
No 121
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=48.21 E-value=30 Score=26.93 Aligned_cols=39 Identities=8% Similarity=-0.051 Sum_probs=25.5
Q ss_pred hHHHHHccCCCceEEEEcCCCCCCChHHHHHHHHHHHHH
Q 028644 4 NKAAAKAMSRFKRVCVFCGSSTGKRNCYRDAALDLGQEL 42 (206)
Q Consensus 4 ~~~~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~l 42 (206)
++|++...++...++|+|+....-.+.|...+..+.+.+
T Consensus 63 ~~Fl~~~~n~~~~~gV~gsGnr~~g~~f~~a~~~i~~~~ 101 (134)
T PRK03600 63 IRFLNDEHNRKLLRGVIASGNRNFGDAFALAGDVISAKC 101 (134)
T ss_pred HHHHhccccCCcEEEEEEecCchHHHHHHHHHHHHHHHh
Confidence 457766677777888887655433566776666665543
No 122
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=48.05 E-value=58 Score=26.65 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=25.4
Q ss_pred CCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecC
Q 028644 111 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD 149 (206)
Q Consensus 111 sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~ 149 (206)
.+.+|+.+||+=.-+|-...+. ....+|.|+.+
T Consensus 72 ~~~ViaTGGG~v~~~enr~~l~------~~g~vv~L~~~ 104 (172)
T COG0703 72 DNAVIATGGGAVLSEENRNLLK------KRGIVVYLDAP 104 (172)
T ss_pred CCeEEECCCccccCHHHHHHHH------hCCeEEEEeCC
Confidence 3699999999999999887772 23477777754
No 123
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=47.96 E-value=17 Score=27.89 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=27.2
Q ss_pred HHHHHHHhhCCeeEEec--C---CcCcHHHHHHHHHHHHhCCCCccEEEE
Q 028644 102 QRKAEMARNSDCFIALP--G---GYGTLEELLEVITWAQLGIHDKPVGLI 146 (206)
Q Consensus 102 ~Rk~~m~~~sDa~Ivlp--G---G~GTL~El~~~~~~~~~g~~~kPiill 146 (206)
.=.+.+++.+|++|++. | ..|+.-|+-.+.+ +++||.++
T Consensus 71 ~~d~~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~------~~~~V~~~ 114 (116)
T PF09152_consen 71 DWDRPFLDACDELVVLDIPGWDDSEGIWAEIEAAEE------MGMPVFLY 114 (116)
T ss_dssp HHHHHHHHH-SEEEE---TTGGG-HHHHHHHHHHHH------TT-EEEEH
T ss_pred HHhHHHHHhcceeEEecCCCccccccHHHHHHHHHH------cCCeEEEe
Confidence 44567889999999995 4 3699999988874 68999874
No 124
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=47.77 E-value=66 Score=23.88 Aligned_cols=6 Identities=17% Similarity=0.733 Sum_probs=2.6
Q ss_pred cCCeEE
Q 028644 69 GGGHVL 74 (206)
Q Consensus 69 ~gG~vi 74 (206)
.|..++
T Consensus 109 ~g~~~v 114 (140)
T TIGR01753 109 AGATII 114 (140)
T ss_pred CCCEEe
Confidence 344443
No 125
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=47.77 E-value=45 Score=28.16 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHH----CCCe-EEE--cCCc-cChhHHHHHHHHhcCC
Q 028644 32 RDAALDLGQELVS----KKLD-LVY--GGGS-VGLMGLVSHVVHRGGG 71 (206)
Q Consensus 32 ~~~A~~lG~~lA~----~g~~-lv~--GGg~-~GlM~a~~~ga~~~gG 71 (206)
.+.|..+|+.||+ .|+. ||+ ||.. -|-++|.|++|.++|-
T Consensus 162 ieaA~~VGk~IAerAl~kGI~kVvFDRgGy~YHGRVkALAdaARe~GL 209 (211)
T PTZ00032 162 IKAAYELGKLIGRKALSKGISKVRFDRAHYKYAGKVEALAEGARAVGL 209 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCeehhHHHHHHHHHHHcCC
Confidence 4678899999997 5663 333 4432 5899999999999873
No 126
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=47.74 E-value=41 Score=29.36 Aligned_cols=154 Identities=19% Similarity=0.241 Sum_probs=79.0
Q ss_pred ccCCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcC-----CeEEEEeCCccccc
Q 028644 10 AMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGG-----GHVLGIIPKTLMNK 84 (206)
Q Consensus 10 ~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~g-----G~viGv~P~~~~~~ 84 (206)
...+++-|++++|..... .+.+...++.+.|-++++-|++-|+ +.+.. .+.| |...|+ |..+ +.
T Consensus 90 v~G~I~Gv~~ivGC~n~~--~~~~~~~~iakeL~k~d~LVlt~GC--~a~~l-----~k~gl~~~~g~~~gi-P~vl-~~ 158 (258)
T cd00587 90 VDGTIPGVALIVGCNNDK--KQDKAYADIAKELMKRGVMVLATGC--AAEAL-----LKLGLEDGAGILGGL-PIVF-DM 158 (258)
T ss_pred HcCCCCeEEEEEeCCCCC--ccchHHHHHHHHHHhCCEEEEecch--HHHHH-----HhcCCccccccccCC-Ccee-ec
Confidence 356888899998877643 3444567899999999999998886 23222 2333 555453 4322 22
Q ss_pred ccCCCCCceeeccCCHHHHHHHHHh---hCC--eeEEecCCcCcHHHHHH--HHHHHHhCCCCccEEEEec-Cccchh-H
Q 028644 85 EITGETVGEVKPVADMHQRKAEMAR---NSD--CFIALPGGYGTLEELLE--VITWAQLGIHDKPVGLINV-DGYYNS-L 155 (206)
Q Consensus 85 e~~~~~~~~~~~~~~~~~Rk~~m~~---~sD--a~IvlpGG~GTL~El~~--~~~~~~~g~~~kPiill~~-~g~w~~-l 155 (206)
. .+++....-.+..|-...+. ..| ++++.|+ -++|=.- .+.+..+|. |+++=-. ..|-++ +
T Consensus 159 G----sCvD~~~ai~~A~~lA~~fg~~~in~LP~~~~a~~---~~sqKAvAi~~g~l~lGI---pv~~Gp~~P~~~s~~v 228 (258)
T cd00587 159 G----NCVDNSHAANLALKLANMFGGYDRSDLPAVASAPG---AYSQKAAAIATGAVFLGV---PVHVGPPLPVDGSIPV 228 (258)
T ss_pred c----cchhHHHHHHHHHHHHHHhCCCCcccCceEEEccc---hhhHHHHHHHHHHHHcCC---ceeeCCCCccccChhH
Confidence 2 12222222333444443333 234 5666666 3344333 333344443 6554210 112222 2
Q ss_pred HHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHh
Q 028644 156 LNFIDKAVDDGFISPSQRSILVSAPNAKELVQKL 189 (206)
Q Consensus 156 ~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l 189 (206)
.++|. ++ ...-....+.+..||++..+.+
T Consensus 229 ~~~L~----~~-~~~~~g~~~~~~~dp~~~a~~i 257 (258)
T cd00587 229 WKVLT----PE-ASDNEGGYFISVTDYQDIVQKA 257 (258)
T ss_pred HHHHH----hc-chhccCcEEEecCCHHHHHHHh
Confidence 22222 11 1112334578889999988765
No 127
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=47.40 E-value=65 Score=27.18 Aligned_cols=73 Identities=23% Similarity=0.330 Sum_probs=42.9
Q ss_pred HHHHHHHhhCCeeEEecCC------cCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCc
Q 028644 102 QRKAEMARNSDCFIALPGG------YGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSI 175 (206)
Q Consensus 102 ~Rk~~m~~~sDa~IvlpGG------~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~ 175 (206)
+....++..||++|...-. -|.-.=++|++ ..++|++..+..+. ..++ ++ .....
T Consensus 247 ~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~------a~G~Pvi~~~~~~~-~~~i-------~~-----~~~g~ 307 (355)
T cd03799 247 EEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAM------AMGLPVISTDVSGI-PELV-------ED-----GETGL 307 (355)
T ss_pred HHHHHHHHhCCEEEecceecCCCCccCccHHHHHHH------HcCCCEEecCCCCc-chhh-------hC-----CCceE
Confidence 4556677899987764322 22233467777 47899998776432 2221 11 11223
Q ss_pred EEEcCCHHHHHHHhHhcc
Q 028644 176 LVSAPNAKELVQKLEVGF 193 (206)
Q Consensus 176 i~~~~~~ee~~~~l~~~~ 193 (206)
+.-.+|++++.+.|.+..
T Consensus 308 ~~~~~~~~~l~~~i~~~~ 325 (355)
T cd03799 308 LVPPGDPEALADAIERLL 325 (355)
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 333458999988887765
No 128
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=47.23 E-value=54 Score=26.25 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=36.8
Q ss_pred hHHHHHccCCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCc-cChhHHHHHHHHh
Q 028644 4 NKAAAKAMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGS-VGLMGLVSHVVHR 68 (206)
Q Consensus 4 ~~~~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~-~GlM~a~~~ga~~ 68 (206)
++|++...+ ++|++|+.+....++.|.+...+-.+.+...+..++ |.-- .|-|........+
T Consensus 59 ~~fl~~l~~--KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~~~~~l-g~f~CqGk~~~~~~e~~~ 121 (160)
T PF12641_consen 59 KEFLKKLKG--KKVALFGTAGAGPDSEYAKKILKNVEALLPKGNEIL-GTFMCQGKMDPKVIEKYK 121 (160)
T ss_pred HHHHHHccC--CeEEEEEecCCCCchHHHHHHHHHHHHhhccCCeec-ceEEeCCcCCHHHHHHHH
Confidence 567777555 589999888877677777666555555555553332 3211 2555555444444
No 129
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=47.20 E-value=52 Score=29.95 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=27.4
Q ss_pred CeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEe
Q 028644 112 DCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 147 (206)
Q Consensus 112 Da~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~ 147 (206)
|+||+..| .-||+|-...+.+.-. .+|||||.+
T Consensus 102 dGvVItHG-TDTmeeTA~~L~l~l~--~~kPVVlTG 134 (351)
T COG0252 102 DGVVITHG-TDTMEETAFFLSLTLN--TPKPVVLTG 134 (351)
T ss_pred CeEEEeCC-CchHHHHHHHHHHHhc--CCCCEEEeC
Confidence 88988885 8999999988877653 389999975
No 130
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=47.02 E-value=1.3e+02 Score=23.24 Aligned_cols=40 Identities=8% Similarity=-0.022 Sum_probs=35.0
Q ss_pred HHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEE
Q 028644 36 LDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 36 ~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 76 (206)
.-++..|-.+||.+++-|-. =-.+...+.|.+.+-.+||+
T Consensus 17 niv~~~L~~~GfeVidLG~~-v~~e~~v~aa~~~~adiVgl 56 (128)
T cd02072 17 KILDHAFTEAGFNVVNLGVL-SPQEEFIDAAIETDADAILV 56 (128)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 45667777899999999986 77899999999999999999
No 131
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=46.77 E-value=30 Score=26.94 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=26.1
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 028644 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (206)
Q Consensus 14 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (206)
|++|+|+-+|..++.. ..|+.+...|...|+.+.
T Consensus 1 M~ki~Ivy~S~tGnTe---~vA~~i~~~l~~~~~~~~ 34 (151)
T COG0716 1 MMKILIVYGSRTGNTE---KVAEIIAEELGADGFEVD 34 (151)
T ss_pred CCeEEEEEEcCCCcHH---HHHHHHHHHhccCCceEE
Confidence 5789999899988643 467888888888877663
No 132
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=46.60 E-value=16 Score=26.55 Aligned_cols=52 Identities=10% Similarity=0.224 Sum_probs=33.6
Q ss_pred EecCccchhHHHHHHHHHHcCCCCccccCcEEEc-----CCHHHHHHHhHhccCCccceee
Q 028644 146 INVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA-----PNAKELVQKLEVGFLFVSRICF 201 (206)
Q Consensus 146 l~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~-----~~~ee~~~~l~~~~~~~~~~~~ 201 (206)
+.++.+.+.++..+.+.++. |+-.++|++- ++|+.+++.+++|....+.-+|
T Consensus 27 ~~~ee~~d~lv~hF~~iteH----P~gSDLIfYP~~~~edsPegIv~~vKeWRa~nG~pgF 83 (85)
T PF01320_consen 27 LKTEEEHDELVDHFEKITEH----PDGSDLIFYPEDGREDSPEGIVKEVKEWRASNGKPGF 83 (85)
T ss_dssp SSSCHHHHHHHHHHHHHH------TTTTHHHHS-STTSTSSHHHHHHHHHHHHHHTT---S
T ss_pred CCCHHHHHHHHHHHHHcCCC----CCCCceeeeCCCCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 44556788888877776543 3444555543 5899999999999877776655
No 133
>PRK05723 flavodoxin; Provisional
Probab=46.58 E-value=24 Score=27.89 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=26.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (206)
++|+|+.||..++.+ +.|+++.+.|.+.|+.+.
T Consensus 1 ~~i~I~ygS~tG~ae---~~A~~la~~l~~~g~~~~ 33 (151)
T PRK05723 1 MKVAILSGSVYGTAE---EVARHAESLLKAAGFEAW 33 (151)
T ss_pred CeEEEEEEcCchHHH---HHHHHHHHHHHHCCCcee
Confidence 478899899988644 467888899988888763
No 134
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=46.54 E-value=2e+02 Score=25.20 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=33.7
Q ss_pred CCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHc-CCCC
Q 028644 111 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDD-GFIS 169 (206)
Q Consensus 111 sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~-gfi~ 169 (206)
.||++..-||.|+.. +..-+.+..+..++|++ ++ |+++-.+...+... |+++
T Consensus 67 i~aI~~~rGG~g~~r-lL~~lD~~~i~~~PK~f--iG----ySDiTaL~~al~~~~g~~t 119 (308)
T cd07062 67 IKAIIPTIGGDDSNE-LLPYLDYELIKKNPKIF--IG----YSDITALHLAIYKKTGLVT 119 (308)
T ss_pred CCEEEECCcccCHhh-hhhhcCHHHHhhCCCEE--Ee----ccHHHHHHHHHHHhcCCeE
Confidence 589999999999864 66667666666666654 32 45655554444433 5543
No 135
>PRK13057 putative lipid kinase; Reviewed
Probab=46.43 E-value=45 Score=28.73 Aligned_cols=32 Identities=25% Similarity=0.508 Sum_probs=23.4
Q ss_pred hCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEe
Q 028644 110 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 147 (206)
Q Consensus 110 ~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~ 147 (206)
..| .|+.-||=||++|+...+. ..+.|+.++-
T Consensus 50 ~~d-~iiv~GGDGTv~~v~~~l~-----~~~~~lgiiP 81 (287)
T PRK13057 50 GVD-LVIVGGGDGTLNAAAPALV-----ETGLPLGILP 81 (287)
T ss_pred CCC-EEEEECchHHHHHHHHHHh-----cCCCcEEEEC
Confidence 345 5667899999999987773 2357888774
No 136
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=46.13 E-value=2.3e+02 Score=25.61 Aligned_cols=70 Identities=14% Similarity=0.128 Sum_probs=40.7
Q ss_pred CCeeEE-ecCCcCcHHHHHHHHHHHHhCC-CCccEEEEecCc-cchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHH
Q 028644 111 SDCFIA-LPGGYGTLEELLEVITWAQLGI-HDKPVGLINVDG-YYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQ 187 (206)
Q Consensus 111 sDa~Iv-lpGG~GTL~El~~~~~~~~~g~-~~kPiill~~~g-~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~ 187 (206)
.|++++ ++||+.-.+++.+.+.-..-.. .+||+++-. .| -.+...+ .+.+.|+ .+.+.+|++++++
T Consensus 311 vd~ilv~i~gg~~~~~~va~~i~~a~~~~~~~kPvvv~~-~g~~~~~~~~---~L~~~G~-------~ip~~~~~~~Av~ 379 (386)
T TIGR01016 311 VKVVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVVRL-EGTNVEEGKK---ILAESGL-------NIIFATSMEEAAE 379 (386)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEe-CCccHHHHHH---HHHHcCC-------CccccCCHHHHHH
Confidence 366554 5788877788887765433221 348995543 33 2222222 2333342 2567899999998
Q ss_pred HhHh
Q 028644 188 KLEV 191 (206)
Q Consensus 188 ~l~~ 191 (206)
...+
T Consensus 380 ~~~~ 383 (386)
T TIGR01016 380 KAVE 383 (386)
T ss_pred HHHH
Confidence 8754
No 137
>PLN02565 cysteine synthase
Probab=46.11 E-value=2.1e+02 Score=25.28 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=23.3
Q ss_pred eEEEcCCccChhHHHHHHHHhcC--CeEEEEeCC
Q 028644 48 DLVYGGGSVGLMGLVSHVVHRGG--GHVLGIIPK 79 (206)
Q Consensus 48 ~lv~GGg~~GlM~a~~~ga~~~g--G~viGv~P~ 79 (206)
.+|.+.|.+|++..++++.++.+ -+++||-|.
T Consensus 175 ~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~ 208 (322)
T PLN02565 175 AFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPV 208 (322)
T ss_pred EEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 34444444599999999988765 489999774
No 138
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=45.89 E-value=34 Score=31.78 Aligned_cols=36 Identities=31% Similarity=0.337 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHCCCeEEEcCCc----------cChhHHHHHHHHhc
Q 028644 34 AALDLGQELVSKKLDLVYGGGS----------VGLMGLVSHVVHRG 69 (206)
Q Consensus 34 ~A~~lG~~lA~~g~~lv~GGg~----------~GlM~a~~~ga~~~ 69 (206)
.|+.|+..|-++||.|||||-. .|+.++.++-.++.
T Consensus 329 Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~ 374 (477)
T KOG2467|consen 329 NAKALASALISRGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLEL 374 (477)
T ss_pred HHHHHHHHHHHcCceEecCCccceEEEEeccccCCchHHHHHHHHH
Confidence 4566777777899999999953 57888887777764
No 139
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=45.67 E-value=31 Score=27.10 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=47.4
Q ss_pred HHHHHHHHhhCCeeEEecCC--cCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEE
Q 028644 101 HQRKAEMARNSDCFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 178 (206)
Q Consensus 101 ~~Rk~~m~~~sDa~IvlpGG--~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~ 178 (206)
......++..||++++-+-- -||++++.+.. ...+++++++++.-+-| +.+.+.|+ ....- ..
T Consensus 53 ~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~------~~~~~vil~GpS~~~~P-----~~l~~~Gv---~~v~g-~~ 117 (147)
T PF04016_consen 53 DEDAEEILPWADVVIITGSTLVNGTIDDILELA------RNAREVILYGPSAPLHP-----EALFDYGV---TYVGG-SR 117 (147)
T ss_dssp GGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHT------TTSSEEEEESCCGGS-G-----GGGCCTT----SEEEE-EE
T ss_pred HHHHHHHHccCCEEEEEeeeeecCCHHHHHHhC------ccCCeEEEEecCchhhH-----HHHHhCCC---CEEEE-EE
Confidence 34677788999998877544 39999997665 35789999987643333 11112221 11111 34
Q ss_pred cCCHHHHHHHhHh
Q 028644 179 APNAKELVQKLEV 191 (206)
Q Consensus 179 ~~~~ee~~~~l~~ 191 (206)
+.|+|.+++.+++
T Consensus 118 v~d~~~~~~~i~~ 130 (147)
T PF04016_consen 118 VVDPEKVLRAISE 130 (147)
T ss_dssp ES-HHHHHHHHCT
T ss_pred EeCHHHHHHHHHc
Confidence 7899999999875
No 140
>PRK13059 putative lipid kinase; Reviewed
Probab=45.55 E-value=51 Score=28.64 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=28.0
Q ss_pred HHHHHCCC-eEEEcCCccChhHHHHHHHHhcC-CeEEEEeCCc
Q 028644 40 QELVSKKL-DLVYGGGSVGLMGLVSHVVHRGG-GHVLGIIPKT 80 (206)
Q Consensus 40 ~~lA~~g~-~lv~GGg~~GlM~a~~~ga~~~g-G~viGv~P~~ 80 (206)
+..++.++ .||..||. |.-.+++.+....+ ...+||+|..
T Consensus 50 ~~~~~~~~d~vi~~GGD-GTv~evv~gl~~~~~~~~lgviP~G 91 (295)
T PRK13059 50 FKDIDESYKYILIAGGD-GTVDNVVNAMKKLNIDLPIGILPVG 91 (295)
T ss_pred HHHhhcCCCEEEEECCc-cHHHHHHHHHHhcCCCCcEEEECCC
Confidence 33444554 55666776 99999999888765 4679999953
No 141
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=45.45 E-value=54 Score=28.57 Aligned_cols=76 Identities=11% Similarity=0.122 Sum_probs=48.5
Q ss_pred HHHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhC-CCCccEEEEecCc-cchhHHHHHHHHHHcCCCCccccCcEEE
Q 028644 101 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLINVDG-YYNSLLNFIDKAVDDGFISPSQRSILVS 178 (206)
Q Consensus 101 ~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g-~~~kPiill~~~g-~w~~l~~~l~~~~~~gfi~~~~~~~i~~ 178 (206)
..|....++.+|.+|+ +||=-.+.-++.+.+.- .++.|++++|.+. .++. .--+.+
T Consensus 205 ~~~a~~~~~~~Dlllv----vGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~------------------~~~~~i 262 (285)
T PRK05333 205 VAAARAALDAADAVLV----VGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADP------------------LLTLKV 262 (285)
T ss_pred HHHHHHHHhcCCEEEE----ECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCc------------------ceeEEE
Confidence 4566667788999888 56655554444333332 4577999999752 1111 013677
Q ss_pred cCCHHHHHHHhHhccCCccc
Q 028644 179 APNAKELVQKLEVGFLFVSR 198 (206)
Q Consensus 179 ~~~~ee~~~~l~~~~~~~~~ 198 (206)
..+..+++..|.+...-..|
T Consensus 263 ~g~~~evL~~l~~~l~~~~~ 282 (285)
T PRK05333 263 EASCAQALAALVARLGLAGR 282 (285)
T ss_pred eCCHHHHHHHHHHHhCCCCC
Confidence 88999999999776654444
No 142
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=45.14 E-value=18 Score=33.51 Aligned_cols=27 Identities=41% Similarity=0.714 Sum_probs=20.1
Q ss_pred eEEEcCCccChhHHHHHHHHhcCCeEEEE
Q 028644 48 DLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 48 ~lv~GGg~~GlM~a~~~ga~~~gG~viGv 76 (206)
++|-|||+.|+|.|+.-+ ++|.+|+=+
T Consensus 6 viIIGgGpAGlMaA~~aa--~~G~~V~li 32 (408)
T COG2081 6 VIIIGGGPAGLMAAISAA--KAGRRVLLI 32 (408)
T ss_pred EEEECCCHHHHHHHHHHh--hcCCEEEEE
Confidence 578899999999887654 466666544
No 143
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=44.82 E-value=43 Score=29.84 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=31.0
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 028644 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGG 53 (206)
Q Consensus 14 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GG 53 (206)
|.+|+|++|......+.=...|+.+.+.|.+.||.++--.
T Consensus 1 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i~ 40 (347)
T PRK14572 1 MAKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPIL 40 (347)
T ss_pred CcEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEEE
Confidence 4578888877665566666899999999999999986443
No 144
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=44.66 E-value=57 Score=28.84 Aligned_cols=38 Identities=26% Similarity=0.256 Sum_probs=26.2
Q ss_pred HhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEe
Q 028644 108 ARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 147 (206)
Q Consensus 108 ~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~ 147 (206)
++..|+||++.| .-||+|....+.+.- ...+|||||-+
T Consensus 70 ~~~~~GvVVtHG-TDTme~tA~~Ls~~l-~~l~kPVVlTG 107 (313)
T PF00710_consen 70 LDDYDGVVVTHG-TDTMEETAFFLSLLL-DNLDKPVVLTG 107 (313)
T ss_dssp HTTCSEEEEE---STTHHHHHHHHHHHE-ES-SSEEEEE-
T ss_pred HHhcCeEEEecC-chHHHHHHHHHHHHh-cCCCCCEEEeC
Confidence 355899988875 899999988876543 12379999875
No 145
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=44.65 E-value=60 Score=27.88 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=26.9
Q ss_pred HHHCCC-eEEEcCCccChhHHHHHHHHhcC-CeEEEEeCCc
Q 028644 42 LVSKKL-DLVYGGGSVGLMGLVSHVVHRGG-GHVLGIIPKT 80 (206)
Q Consensus 42 lA~~g~-~lv~GGg~~GlM~a~~~ga~~~g-G~viGv~P~~ 80 (206)
.++.++ .||.-||. |....+..+..... ...+|++|..
T Consensus 53 ~~~~~~d~ivv~GGD-GTl~~v~~~l~~~~~~~~lgiiP~G 92 (293)
T TIGR00147 53 ARKFGVDTVIAGGGD-GTINEVVNALIQLDDIPALGILPLG 92 (293)
T ss_pred HHhcCCCEEEEECCC-ChHHHHHHHHhcCCCCCcEEEEcCc
Confidence 334443 56677777 99999999987643 3479999954
No 146
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
Probab=44.53 E-value=72 Score=24.81 Aligned_cols=40 Identities=20% Similarity=0.373 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHH----CCC-eEEEcCCc---cChhHHHHHHHHhcCC
Q 028644 32 RDAALDLGQELVS----KKL-DLVYGGGS---VGLMGLVSHVVHRGGG 71 (206)
Q Consensus 32 ~~~A~~lG~~lA~----~g~-~lv~GGg~---~GlM~a~~~ga~~~gG 71 (206)
.+.|..+|.++|+ .|+ .+|.|=+. .|--.|+++||.|+|-
T Consensus 76 ~~aA~~vG~lia~ra~~kgi~~vVfdr~g~~yhgRV~Ala~~AreaGL 123 (125)
T COG0256 76 TEAAYLVGKLIAERALAKGIEEVVFDRGGYKYHGRVAALADGAREAGL 123 (125)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCcchHHHHHHHHHHHcCc
Confidence 4677888888886 577 45665443 5889999999999874
No 147
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=44.52 E-value=59 Score=28.20 Aligned_cols=68 Identities=16% Similarity=0.229 Sum_probs=41.6
Q ss_pred HHhhCCeeEEecC--CcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCCHHH
Q 028644 107 MARNSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKE 184 (206)
Q Consensus 107 m~~~sDa~IvlpG--G~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee 184 (206)
++..||++|...- |+|. =+.|++ .+++|||..+.+..-.. ++. +.....++-.+|+++
T Consensus 275 ~~~~ad~~v~~S~~Eg~~~--~~lEAm------a~G~PvI~~~~~~g~~~-------~v~-----~~~~G~lv~~~d~~~ 334 (372)
T cd04949 275 VYQKAQLSLLTSQSEGFGL--SLMEAL------SHGLPVISYDVNYGPSE-------IIE-----DGENGYLVPKGDIEA 334 (372)
T ss_pred HHhhhhEEEecccccccCh--HHHHHH------hCCCCEEEecCCCCcHH-------Hcc-----cCCCceEeCCCcHHH
Confidence 5677998887652 4443 266777 47899999876421122 221 222333444458999
Q ss_pred HHHHhHhccC
Q 028644 185 LVQKLEVGFL 194 (206)
Q Consensus 185 ~~~~l~~~~~ 194 (206)
+.+.|.++..
T Consensus 335 la~~i~~ll~ 344 (372)
T cd04949 335 LAEAIIELLN 344 (372)
T ss_pred HHHHHHHHHc
Confidence 9998887764
No 148
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.39 E-value=1.3e+02 Score=26.47 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=34.1
Q ss_pred CCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe------------------------------EEEcCCccChhHH
Q 028644 12 SRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLD------------------------------LVYGGGSVGLMGL 61 (206)
Q Consensus 12 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~------------------------------lv~GGg~~GlM~a 61 (206)
+.+++|+|+.-.. .+.-.+.++++.++|.++|+. +++-||. |.+-.
T Consensus 2 ~~~~~v~iv~~~~---k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD-Gt~l~ 77 (295)
T PRK01231 2 PSFRNIGLIGRLG---SSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGD-GSLLG 77 (295)
T ss_pred CCCCEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCc-HHHHH
Confidence 3466788884322 244445666666666554432 3444555 65555
Q ss_pred HHHHHHhcCCeEEEE
Q 028644 62 VSHVVHRGGGHVLGI 76 (206)
Q Consensus 62 ~~~ga~~~gG~viGv 76 (206)
+++.+...+-.++||
T Consensus 78 ~~~~~~~~~~Pvlgi 92 (295)
T PRK01231 78 AARALARHNVPVLGI 92 (295)
T ss_pred HHHHhcCCCCCEEEE
Confidence 555544445567777
No 149
>PRK10494 hypothetical protein; Provisional
Probab=44.17 E-value=92 Score=26.86 Aligned_cols=12 Identities=42% Similarity=0.877 Sum_probs=9.9
Q ss_pred hCCeeEEecCCc
Q 028644 110 NSDCFIALPGGY 121 (206)
Q Consensus 110 ~sDa~IvlpGG~ 121 (206)
.+|++|||+||.
T Consensus 78 ~~d~IVVLGgG~ 89 (259)
T PRK10494 78 KVDYIVVLGGGY 89 (259)
T ss_pred CCCEEEEcCCCc
Confidence 488999999885
No 150
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=44.02 E-value=53 Score=27.82 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=42.0
Q ss_pred HHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCCHHH
Q 028644 105 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKE 184 (206)
Q Consensus 105 ~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee 184 (206)
..++..||++|.-...-|.-.=++|+++ .++|++..+..+ ...+ +.+ ...++-.+|+++
T Consensus 257 ~~~~~~ad~~v~~s~~e~~~~~~~Ea~a------~G~PvI~~~~~~-~~e~------------i~~--~g~~~~~~~~~~ 315 (360)
T cd04951 257 AAYYNAADLFVLSSAWEGFGLVVAEAMA------CELPVVATDAGG-VREV------------VGD--SGLIVPISDPEA 315 (360)
T ss_pred HHHHHhhceEEecccccCCChHHHHHHH------cCCCEEEecCCC-hhhE------------ecC--CceEeCCCCHHH
Confidence 3467889987765432222223667773 689999877643 2221 111 234556689999
Q ss_pred HHHHhHhcc
Q 028644 185 LVQKLEVGF 193 (206)
Q Consensus 185 ~~~~l~~~~ 193 (206)
+.+.|.+..
T Consensus 316 ~~~~i~~ll 324 (360)
T cd04951 316 LANKIDEIL 324 (360)
T ss_pred HHHHHHHHH
Confidence 999998875
No 151
>PLN02275 transferase, transferring glycosyl groups
Probab=44.01 E-value=1.4e+02 Score=26.35 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=41.5
Q ss_pred HHHHHHHhhCCeeEEec-C--CcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEE
Q 028644 102 QRKAEMARNSDCFIALP-G--GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 178 (206)
Q Consensus 102 ~Rk~~m~~~sDa~Ivlp-G--G~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~ 178 (206)
+.-..++..||++|... . |.|--.=+.|+++ .++||+..+.+|. ..++++| ... +.
T Consensus 298 ~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA------~G~PVVa~~~gg~--------~eiv~~g-----~~G-~l- 356 (371)
T PLN02275 298 EDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFG------CGLPVCAVSYSCI--------GELVKDG-----KNG-LL- 356 (371)
T ss_pred HHHHHHHHhCCEEEEeccccccccccHHHHHHHH------CCCCEEEecCCCh--------HHHccCC-----CCe-EE-
Confidence 44455778999998631 2 2333444677774 7999999876541 2233222 112 22
Q ss_pred cCCHHHHHHHhHhc
Q 028644 179 APNAKELVQKLEVG 192 (206)
Q Consensus 179 ~~~~ee~~~~l~~~ 192 (206)
++|++++.+.|.+.
T Consensus 357 v~~~~~la~~i~~l 370 (371)
T PLN02275 357 FSSSSELADQLLEL 370 (371)
T ss_pred ECCHHHHHHHHHHh
Confidence 35789988887653
No 152
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=43.84 E-value=76 Score=27.15 Aligned_cols=69 Identities=22% Similarity=0.297 Sum_probs=41.0
Q ss_pred HHHHHhhCCeeEEecC---------CcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccC
Q 028644 104 KAEMARNSDCFIALPG---------GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRS 174 (206)
Q Consensus 104 k~~m~~~sDa~IvlpG---------G~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~ 174 (206)
...++..||++|. |. |+|+ =+.|++ ..++||+.-+..+. .++ +.+....
T Consensus 258 l~~~~~~ad~~v~-ps~~~~~~~~E~~~~--~~~EA~------a~G~PvI~s~~~~~-~e~------------i~~~~~g 315 (367)
T cd05844 258 VRELMRRARIFLQ-PSVTAPSGDAEGLPV--VLLEAQ------ASGVPVVATRHGGI-PEA------------VEDGETG 315 (367)
T ss_pred HHHHHHhCCEEEE-CcccCCCCCccCCch--HHHHHH------HcCCCEEEeCCCCc-hhh------------eecCCee
Confidence 3346789998765 32 2333 266677 47899998776542 111 1111223
Q ss_pred cEEEcCCHHHHHHHhHhccC
Q 028644 175 ILVSAPNAKELVQKLEVGFL 194 (206)
Q Consensus 175 ~i~~~~~~ee~~~~l~~~~~ 194 (206)
.++-.+|++++.+.|.+...
T Consensus 316 ~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 316 LLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred EEECCCCHHHHHHHHHHHHc
Confidence 33435689999988887654
No 153
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=43.84 E-value=23 Score=31.70 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=32.9
Q ss_pred ccchhHHHHHHHHHHcCCCCccccCc---EEEcCCHHHHHHHhHhc
Q 028644 150 GYYNSLLNFIDKAVDDGFISPSQRSI---LVSAPNAKELVQKLEVG 192 (206)
Q Consensus 150 g~w~~l~~~l~~~~~~gfi~~~~~~~---i~~~~~~ee~~~~l~~~ 192 (206)
.+|+.+-.-+..|+.+|.|+++..+. -.+..+++|+-+.|++-
T Consensus 198 ~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~ 243 (334)
T PF03492_consen 198 MLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEE 243 (334)
T ss_dssp CHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcC
Confidence 47888888899999999999998764 47889999999988763
No 154
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=43.62 E-value=1.7e+02 Score=25.12 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=49.9
Q ss_pred HHHHHHHHh-hCCe-eEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEE
Q 028644 101 HQRKAEMAR-NSDC-FIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 178 (206)
Q Consensus 101 ~~Rk~~m~~-~sDa-~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~ 178 (206)
..+.+...+ -.+- ++...||. =+=+...++..- ..+.|++++|+.=.|...+++.+++.++=- .+ +.+
T Consensus 28 ~~i~~~~~~~~~~~~~~~~S~Gk--ds~V~l~L~~k~--~~~~~vif~DTg~~f~Et~~~~d~~~~~~~-----~~-l~~ 97 (261)
T COG0175 28 IEILRWAAEEFSNPVVVSFSGGK--DSTVLLHLAAKA--FPDFPVIFLDTGYHFPETYEFRDRLAEEYG-----LD-LKV 97 (261)
T ss_pred HHHHHHHHHHcCCCeEEEecCch--hHHHHHHHHHHh--cCCCcEEEEeCCCcCHHHHHHHHHHHHHcC-----Ce-EEE
Confidence 334443333 3444 45555554 443444443322 223799999998788899999988754311 22 444
Q ss_pred cCCHHHHHHH---hHhccCCc-ccee
Q 028644 179 APNAKELVQK---LEVGFLFV-SRIC 200 (206)
Q Consensus 179 ~~~~ee~~~~---l~~~~~~~-~~~~ 200 (206)
....++..+. ...+..+. .|+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~r~c 123 (261)
T COG0175 98 YRPDDEVAEGEKYGGKLWEPSVERWC 123 (261)
T ss_pred ecCccchhhhhhcccCCCCCCcchhh
Confidence 4444455555 56666555 5644
No 155
>PRK06756 flavodoxin; Provisional
Probab=43.52 E-value=40 Score=25.87 Aligned_cols=32 Identities=9% Similarity=0.232 Sum_probs=19.2
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe
Q 028644 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLD 48 (206)
Q Consensus 14 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~ 48 (206)
|++|.|+.+|..++.. +.|+.+++.|.+.|+.
T Consensus 1 mmkv~IiY~S~tGnTe---~vA~~ia~~l~~~g~~ 32 (148)
T PRK06756 1 MSKLVMIFASMSGNTE---EMADHIAGVIRETENE 32 (148)
T ss_pred CceEEEEEECCCchHH---HHHHHHHHHHhhcCCe
Confidence 3467777677766433 4556666666555544
No 156
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=43.48 E-value=91 Score=26.40 Aligned_cols=68 Identities=19% Similarity=0.268 Sum_probs=42.8
Q ss_pred HHHHHhhCCeeEEec---CCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcC
Q 028644 104 KAEMARNSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 180 (206)
Q Consensus 104 k~~m~~~sDa~Ivlp---GG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 180 (206)
....+..||++|.-. .|+|+ =++|++ ..++|+|..+..+ ..+++. ++ ....+.-.+
T Consensus 257 ~~~~l~~ad~~i~ps~~~e~~~~--~l~EA~------a~G~PvI~~~~~~-~~e~i~-------~~-----~~g~~~~~~ 315 (355)
T cd03819 257 MPAAYALADIVVSASTEPEAFGR--TAVEAQ------AMGRPVIASDHGG-ARETVR-------PG-----ETGLLVPPG 315 (355)
T ss_pred HHHHHHhCCEEEecCCCCCCCch--HHHHHH------hcCCCEEEcCCCC-cHHHHh-------CC-----CceEEeCCC
Confidence 345677899987643 34553 367777 4789999987654 333222 11 123445568
Q ss_pred CHHHHHHHhHhc
Q 028644 181 NAKELVQKLEVG 192 (206)
Q Consensus 181 ~~ee~~~~l~~~ 192 (206)
|++++.+.|.+.
T Consensus 316 ~~~~l~~~i~~~ 327 (355)
T cd03819 316 DAEALAQALDQI 327 (355)
T ss_pred CHHHHHHHHHHH
Confidence 999999988644
No 157
>PRK06703 flavodoxin; Provisional
Probab=43.11 E-value=84 Score=24.11 Aligned_cols=13 Identities=8% Similarity=0.204 Sum_probs=5.9
Q ss_pred HHHHHhcCCeEEE
Q 028644 63 SHVVHRGGGHVLG 75 (206)
Q Consensus 63 ~~ga~~~gG~viG 75 (206)
.+-..+.|..+++
T Consensus 106 ~~~l~~~G~~~~~ 118 (151)
T PRK06703 106 EERLVERGAELVQ 118 (151)
T ss_pred HHHHHHCCCEEcc
Confidence 3333345555544
No 158
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=42.30 E-value=48 Score=27.33 Aligned_cols=40 Identities=23% Similarity=0.363 Sum_probs=29.8
Q ss_pred CceEEEEcCCCCCC-ChHHHHHHHHHHHHHHHCCCeE-EEcC
Q 028644 14 FKRVCVFCGSSTGK-RNCYRDAALDLGQELVSKKLDL-VYGG 53 (206)
Q Consensus 14 ~~~I~Vfggs~~~~-~~~~~~~A~~lG~~lA~~g~~l-v~GG 53 (206)
|++|+|+|.-..++ --=|...+++|+..|+++|+.+ ||.-
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~ 42 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCR 42 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEc
Confidence 68999997654443 2256789999999999999975 5544
No 159
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=42.05 E-value=88 Score=22.40 Aligned_cols=91 Identities=12% Similarity=0.115 Sum_probs=51.3
Q ss_pred EEEcCCccChhHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceeeccCCHHHHHHHHHhhCCeeEEecCCcC--cHHH
Q 028644 49 LVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYG--TLEE 126 (206)
Q Consensus 49 lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~G--TL~E 126 (206)
++-||-. ......-+-+.+.|+..+-. ... . -......+-...+..+|.+|++-+=.. +...
T Consensus 3 liVGG~~-~~~~~~~~~~~~~G~~~~~h--g~~---~----------~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~ 66 (97)
T PF10087_consen 3 LIVGGRE-DRERRYKRILEKYGGKLIHH--GRD---G----------GDEKKASRLPSKIKKADLVIVFTDYVSHNAMWK 66 (97)
T ss_pred EEEcCCc-ccHHHHHHHHHHcCCEEEEE--ecC---C----------CCccchhHHHHhcCCCCEEEEEeCCcChHHHHH
Confidence 3445533 55555555666677766554 110 0 011112234456778999999988663 3333
Q ss_pred HHHHHHHHHhCCCCccEEEEecCccchhHHHHHHH
Q 028644 127 LLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDK 161 (206)
Q Consensus 127 l~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~ 161 (206)
+-.... ..++|++..+.. -|..+.+.|++
T Consensus 67 vk~~ak-----k~~ip~~~~~~~-~~~~l~~~l~~ 95 (97)
T PF10087_consen 67 VKKAAK-----KYGIPIIYSRSR-GVSSLERALER 95 (97)
T ss_pred HHHHHH-----HcCCcEEEECCC-CHHHHHHHHHh
Confidence 333321 478999998754 47777766554
No 160
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=41.93 E-value=2.5e+02 Score=24.82 Aligned_cols=83 Identities=18% Similarity=0.094 Sum_probs=39.6
Q ss_pred CCeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCcccccccC-CCCCceeeccCCHHHHHHHHHhhCCeeEEecCCcCcH
Q 028644 46 KLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEIT-GETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTL 124 (206)
Q Consensus 46 g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~-~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL 124 (206)
...+|.|+|+.|++ +..-|+..|..++.+........+.. .-..+.++...+- ++-..+....|.++=.-|+..|+
T Consensus 185 ~~VlV~G~G~vG~~--avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~-~~~~~~~~~~D~vid~~g~~~~~ 261 (360)
T PLN02586 185 KHLGVAGLGGLGHV--AVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDP-EKMKAAIGTMDYIIDTVSAVHAL 261 (360)
T ss_pred CEEEEECCCHHHHH--HHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCH-HHHHhhcCCCCEEEECCCCHHHH
Confidence 34567666655555 55567777888877643321101110 1111222222221 11111122357777777766677
Q ss_pred HHHHHHH
Q 028644 125 EELLEVI 131 (206)
Q Consensus 125 ~El~~~~ 131 (206)
++.+..+
T Consensus 262 ~~~~~~l 268 (360)
T PLN02586 262 GPLLGLL 268 (360)
T ss_pred HHHHHHh
Confidence 7665544
No 161
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=41.92 E-value=1e+02 Score=26.68 Aligned_cols=69 Identities=16% Similarity=0.065 Sum_probs=38.9
Q ss_pred eeEEecCCcCcHHHHHHHHHHHHhC-CCCccEEEEe---cCccchhHHHHHHHHHHcCCCCccccCc--EEEcCCHHHHH
Q 028644 113 CFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLIN---VDGYYNSLLNFIDKAVDDGFISPSQRSI--LVSAPNAKELV 186 (206)
Q Consensus 113 a~IvlpGG~GTL~El~~~~~~~~~g-~~~kPiill~---~~g~w~~l~~~l~~~~~~gfi~~~~~~~--i~~~~~~ee~~ 186 (206)
|+|+|.||.||- +| ..+||.+=+. ..-+.+-..+.+..+...- -....... +...++.++..
T Consensus 2 a~viLaGG~GtR-----------Lg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~-~~~~~Ip~~imts~~t~~~t~ 69 (266)
T cd04180 2 AVVLLAGGLGTR-----------LGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEID-LYSCKIPEQLMNSKYTHEKTQ 69 (266)
T ss_pred EEEEECCCCccc-----------cCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHh-hcCCCCCEEEEcCchhHHHHH
Confidence 689999999995 23 3467666443 3346666666554432210 00111222 23335677888
Q ss_pred HHhHhcc
Q 028644 187 QKLEVGF 193 (206)
Q Consensus 187 ~~l~~~~ 193 (206)
++++++.
T Consensus 70 ~~l~~~~ 76 (266)
T cd04180 70 CYFEKIN 76 (266)
T ss_pred HHHHHcC
Confidence 8888766
No 162
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=41.83 E-value=1.1e+02 Score=27.03 Aligned_cols=72 Identities=19% Similarity=0.276 Sum_probs=43.5
Q ss_pred HHHHHHHhhCCeeEEe--cCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEc
Q 028644 102 QRKAEMARNSDCFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 179 (206)
Q Consensus 102 ~Rk~~m~~~sDa~Ivl--pGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~ 179 (206)
+....++..||++|.- ..|+|.. +.|++ ..++||+..+..| ...+ +.++ ....+.-.
T Consensus 294 ~~~~~~l~~ad~~v~ps~~E~~g~~--~lEAm------a~G~Pvi~~~~~~-~~e~-------i~~~-----~~g~~~~~ 352 (405)
T TIGR03449 294 EELVHVYRAADVVAVPSYNESFGLV--AMEAQ------ACGTPVVAARVGG-LPVA-------VADG-----ETGLLVDG 352 (405)
T ss_pred HHHHHHHHhCCEEEECCCCCCcChH--HHHHH------HcCCCEEEecCCC-cHhh-------hccC-----CceEECCC
Confidence 4455678899998764 3566653 66666 3689999887643 2222 1111 11122223
Q ss_pred CCHHHHHHHhHhccC
Q 028644 180 PNAKELVQKLEVGFL 194 (206)
Q Consensus 180 ~~~ee~~~~l~~~~~ 194 (206)
+|++++.+.|.++..
T Consensus 353 ~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 353 HDPADWADALARLLD 367 (405)
T ss_pred CCHHHHHHHHHHHHh
Confidence 588888888877653
No 163
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=41.62 E-value=52 Score=24.59 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=18.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (206)
|+|+|+|.|..... .++.+-+.|.++|+.++
T Consensus 1 ksiAVvGaS~~~~~-----~g~~v~~~l~~~G~~v~ 31 (116)
T PF13380_consen 1 KSIAVVGASDNPGK-----FGYRVLRNLKAAGYEVY 31 (116)
T ss_dssp -EEEEET--SSTTS-----HHHHHHHHHHHTT-EEE
T ss_pred CEEEEEcccCCCCC-----hHHHHHHHHHhCCCEEE
Confidence 58999987765432 24567777777887765
No 164
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.56 E-value=63 Score=28.16 Aligned_cols=34 Identities=12% Similarity=0.045 Sum_probs=24.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (206)
++|+|+. +.+ ++.-.+.+.++.++|.++|+.+..
T Consensus 1 m~v~iv~--~~~-k~~~~~~~~~I~~~L~~~g~~v~v 34 (277)
T PRK03708 1 MRFGIVA--RRD-KEEALKLAYRVYDFLKVSGYEVVV 34 (277)
T ss_pred CEEEEEe--cCC-CHHHHHHHHHHHHHHHHCCCEEEE
Confidence 4688883 333 345557888999999999988775
No 165
>PRK11096 ansB L-asparaginase II; Provisional
Probab=41.30 E-value=43 Score=30.29 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=28.5
Q ss_pred hhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEe
Q 028644 109 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 147 (206)
Q Consensus 109 ~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~ 147 (206)
+..|+||+..| .-||+|....+.+. + ..+||||+-+
T Consensus 99 ~~~dGiVVtHG-TDTme~tA~~Ls~~-~-~~~kPVVlTG 134 (347)
T PRK11096 99 DKTDGFVITHG-TDTMEETAYFLDLT-V-KCDKPVVLVG 134 (347)
T ss_pred CCCCEEEEeCC-CchHHHHHHHHHHh-c-cCCCCEEEeC
Confidence 45788888765 89999999988874 3 3589999976
No 166
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=41.29 E-value=28 Score=30.75 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=25.2
Q ss_pred HHHHHHHHHCCCeEEEcCCccChhHHHHHHHHh
Q 028644 36 LDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHR 68 (206)
Q Consensus 36 ~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~ 68 (206)
++|+|.|+.+...||.+|| |+=+.++-|+++
T Consensus 5 ~rl~r~l~~~~~gLvL~GG--G~RG~ahiGvL~ 35 (306)
T cd07225 5 SRLARVLTGNSIALVLGGG--GARGCAHIGVIK 35 (306)
T ss_pred HHHHHHhcCCCEEEEECCh--HHHHHHHHHHHH
Confidence 5789999999999998887 777777777765
No 167
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=41.21 E-value=1.6e+02 Score=26.64 Aligned_cols=69 Identities=13% Similarity=0.009 Sum_probs=49.3
Q ss_pred HHHHHccCCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEE
Q 028644 5 KAAAKAMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 5 ~~~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 76 (206)
.+++...+--++|+|+++++..+... ..+++=+.+.++|+.|+.=+-+..-+-..+..++.....+|=+
T Consensus 150 ~lik~~~Pnak~Igv~Y~p~E~ns~~---l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~ 218 (322)
T COG2984 150 ELIKALLPNAKSIGVLYNPGEANSVS---LVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYI 218 (322)
T ss_pred HHHHHhCCCCeeEEEEeCCCCcccHH---HHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEE
Confidence 46677788889999999888655443 4467777777899999988776566666666666655555544
No 168
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=41.13 E-value=1.5e+02 Score=26.74 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=44.1
Q ss_pred HHHHHHHhhCCeeEEe-cC--CcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEE
Q 028644 102 QRKAEMARNSDCFIAL-PG--GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 178 (206)
Q Consensus 102 ~Rk~~m~~~sDa~Ivl-pG--G~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~ 178 (206)
+....++..||++|.+ +. |.|--.-++|+++ .++||+..+..| ..+ ++++| ... +.+
T Consensus 306 ~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama------~G~PVI~s~~~~-~~e-------iv~~~-----~~G-~lv 365 (415)
T cd03816 306 EDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFG------CGLPVCALDFKC-IDE-------LVKHG-----ENG-LVF 365 (415)
T ss_pred HHHHHHHHhCCEEEEccccccccCCcHHHHHHHH------cCCCEEEeCCCC-HHH-------HhcCC-----CCE-EEE
Confidence 4445577899999853 21 2333445677773 789999877643 222 22222 112 233
Q ss_pred cCCHHHHHHHhHhccCC
Q 028644 179 APNAKELVQKLEVGFLF 195 (206)
Q Consensus 179 ~~~~ee~~~~l~~~~~~ 195 (206)
+|++++.+.|.+....
T Consensus 366 -~d~~~la~~i~~ll~~ 381 (415)
T cd03816 366 -GDSEELAEQLIDLLSN 381 (415)
T ss_pred -CCHHHHHHHHHHHHhc
Confidence 6999999999877543
No 169
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=41.01 E-value=87 Score=26.50 Aligned_cols=70 Identities=13% Similarity=0.068 Sum_probs=38.9
Q ss_pred HHHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcC
Q 028644 101 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 180 (206)
Q Consensus 101 ~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 180 (206)
..+....++.||.+|+++=. -++.-+..+.+.-..+.|++++|.+. .+ + +.....-+.+..
T Consensus 166 ~~~~~~~~~~aDlllvvGTS----l~V~pa~~l~~~~~~~~~~v~iN~~~--~~------------~-~~~~~~d~~~~~ 226 (235)
T cd01408 166 FSHMEEDKEEADLLIVIGTS----LKVAPFASLPSRVPSEVPRVLINREP--VG------------H-LGKRPFDVALLG 226 (235)
T ss_pred HHHHHHHHhcCCEEEEECCC----CeeccHHHHHHHHhCCCcEEEEeCCC--CC------------C-CCCCCcCEEEeC
Confidence 45555667889999996433 22222222222223468999999641 00 0 001112367788
Q ss_pred CHHHHHHHh
Q 028644 181 NAKELVQKL 189 (206)
Q Consensus 181 ~~ee~~~~l 189 (206)
+.+|++..|
T Consensus 227 ~~~~~l~~~ 235 (235)
T cd01408 227 DCDDGVREL 235 (235)
T ss_pred CHHHHHHhC
Confidence 888888754
No 170
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=40.47 E-value=22 Score=30.93 Aligned_cols=30 Identities=30% Similarity=0.565 Sum_probs=23.1
Q ss_pred HHHHHHHHCCCeEEEcCCccChhHHHHHHHHh
Q 028644 37 DLGQELVSKKLDLVYGGGSVGLMGLVSHVVHR 68 (206)
Q Consensus 37 ~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~ 68 (206)
+|+|.|+.+...||.||| |.=++++-|+++
T Consensus 1 rlar~l~g~~igLVL~GG--GaRG~ahiGVL~ 30 (269)
T cd07227 1 RLARRLCGQAIGLVLGGG--GARGISHIGILQ 30 (269)
T ss_pred ChhhHhcCCCEEEEECCc--HHHHHHHHHHHH
Confidence 377888888888888886 777777777665
No 171
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=40.25 E-value=38 Score=25.74 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=22.2
Q ss_pred CeEEEcCCccChhHHHHHHHHhcCCeEEEEe
Q 028644 47 LDLVYGGGSVGLMGLVSHVVHRGGGHVLGII 77 (206)
Q Consensus 47 ~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~ 77 (206)
..||+||+. |+=.++++...+.|+.++.++
T Consensus 2 ~~lItGa~~-giG~~~a~~l~~~g~~~v~~~ 31 (167)
T PF00106_consen 2 TVLITGASS-GIGRALARALARRGARVVILT 31 (167)
T ss_dssp EEEEETTTS-HHHHHHHHHHHHTTTEEEEEE
T ss_pred EEEEECCCC-HHHHHHHHHHHhcCceEEEEe
Confidence 357888886 888888888888877555543
No 172
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=40.05 E-value=1.4e+02 Score=25.01 Aligned_cols=108 Identities=17% Similarity=0.143 Sum_probs=59.7
Q ss_pred CCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE--EEcCCccChhHHHHHHHHhcCCeEEEEeCCcccccccCC--
Q 028644 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL--VYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITG-- 88 (206)
Q Consensus 13 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~l--v~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~-- 88 (206)
..+.|+|+=+. ++ +.+.++++.|.+.|+.+ ||=-.+ +..+++.+-..+.+...+|.= .....+...
T Consensus 7 ~~~liaVlr~~----~~---e~a~~~~~al~~~Gi~~iEit~~t~-~a~~~i~~l~~~~~~~~vGAG--TVl~~~~a~~a 76 (204)
T TIGR01182 7 EAKIVPVIRID----DV---DDALPLAKALIEGGLRVLEVTLRTP-VALDAIRLLRKEVPDALIGAG--TVLNPEQLRQA 76 (204)
T ss_pred hCCEEEEEecC----CH---HHHHHHHHHHHHcCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEEEE--eCCCHHHHHHH
Confidence 34577777321 12 46678888899988866 343444 777776666656666778872 111111110
Q ss_pred -CCCceeeccCCHHHHHHHHHhhCCeeEEecCCcCcHHHHHHHHH
Q 028644 89 -ETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVIT 132 (206)
Q Consensus 89 -~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~ 132 (206)
+.=.+.++.+++. ....-....-.+..+| |.-|..|+..++.
T Consensus 77 ~~aGA~FivsP~~~-~~v~~~~~~~~i~~iP-G~~TptEi~~A~~ 119 (204)
T TIGR01182 77 VDAGAQFIVSPGLT-PELAKHAQDHGIPIIP-GVATPSEIMLALE 119 (204)
T ss_pred HHcCCCEEECCCCC-HHHHHHHHHcCCcEEC-CCCCHHHHHHHHH
Confidence 0001344444442 2222222333567788 6789999988884
No 173
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=39.94 E-value=1.9e+02 Score=26.29 Aligned_cols=95 Identities=23% Similarity=0.263 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHH----CCCeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCc-ccccccCCCCCceeec--------cCC
Q 028644 33 DAALDLGQELVS----KKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKT-LMNKEITGETVGEVKP--------VAD 99 (206)
Q Consensus 33 ~~A~~lG~~lA~----~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~-~~~~e~~~~~~~~~~~--------~~~ 99 (206)
+.|.++.+-|++ .|..|| ||=..=+.+....+-.+.-|-++|+.... ..+.+...+ .+.++ ...
T Consensus 114 ~~~~~iv~GiaeGc~~ag~aLv-GGETAeMPg~y~~g~yDlaG~~vGvvek~~ii~g~~i~~--GDviigl~SSG~HSNG 190 (345)
T COG0150 114 EVAAQIVKGIAEGCKQAGCALV-GGETAEMPGMYRGGDYDLAGFAVGVVEKDEIIDGSKVKE--GDVIIGLASSGLHSNG 190 (345)
T ss_pred HHHHHHHHHHHHHHHHhCCEEe-ccccccCCCcccCCceeeeeeEEEEEEccccccccccCC--CCEEEEecCCCcCCCc
Confidence 455777777775 788888 44432222222333356668889987532 222111111 12222 234
Q ss_pred HH-HHHHHHHhhCCeeEEecCCcC-cHHHHHHH
Q 028644 100 MH-QRKAEMARNSDCFIALPGGYG-TLEELLEV 130 (206)
Q Consensus 100 ~~-~Rk~~m~~~sDa~IvlpGG~G-TL~El~~~ 130 (206)
++ .||.+....-+.---+|...| ||-|.+..
T Consensus 191 ySLvRKi~~~~~~~~~~~~~~~~g~~l~e~LL~ 223 (345)
T COG0150 191 YSLVRKIIEESGLDYDDELPEELGKTLGEELLE 223 (345)
T ss_pred hHHHHHHHHhcCccccccCccccccCHHHHhcC
Confidence 43 687766432333445788877 88776643
No 174
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=39.73 E-value=38 Score=29.08 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=19.7
Q ss_pred eEEEcCCccChhHHHHHHHHhcCCeEEE
Q 028644 48 DLVYGGGSVGLMGLVSHVVHRGGGHVLG 75 (206)
Q Consensus 48 ~lv~GGg~~GlM~a~~~ga~~~gG~viG 75 (206)
.|+|||+. |+=-+.++...+.|-+||=
T Consensus 8 iLITGG~s-GIGl~lak~f~elgN~VIi 34 (245)
T COG3967 8 ILITGGAS-GIGLALAKRFLELGNTVII 34 (245)
T ss_pred EEEeCCcc-hhhHHHHHHHHHhCCEEEE
Confidence 45777775 8888888888887777653
No 175
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.62 E-value=1.9e+02 Score=25.74 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=20.4
Q ss_pred CCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC
Q 028644 12 SRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKL 47 (206)
Q Consensus 12 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~ 47 (206)
.++++|+++.- .. .+...+.++++.++|.++|+
T Consensus 3 ~~~~~I~iv~~--~~-~~~~~~~~~~l~~~L~~~g~ 35 (306)
T PRK03372 3 TASRRVLLVAH--TG-RDEATEAARRVAKQLGDAGI 35 (306)
T ss_pred CCccEEEEEec--CC-CHHHHHHHHHHHHHHHHCCC
Confidence 45677888843 22 34445677777777765543
No 176
>PRK06443 chorismate mutase; Validated
Probab=39.48 E-value=95 Score=25.58 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEE
Q 028644 30 CYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLG 75 (206)
Q Consensus 30 ~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viG 75 (206)
.|...|+.||..+...||.|+-- -.....-.|+..+||+++-
T Consensus 91 ~y~~~~~sl~~~~~~~g~~v~i~----~~~~~~~~~~~~~~~~~~~ 132 (177)
T PRK06443 91 DYDSLILSLGLILSRPGIEIYIE----DNPDSIEEGCSKAGGHVVI 132 (177)
T ss_pred chHHHHHHHHHHHhcCCcEEEec----cCchHHHHhhhhcCCeEec
Confidence 37789999999999999998732 3567777888899998643
No 177
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.90 E-value=1.7e+02 Score=25.75 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=17.6
Q ss_pred eEEEcCCccChhHHHHHHHHhcCCeEEEE
Q 028644 48 DLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 48 ~lv~GGg~~GlM~a~~~ga~~~gG~viGv 76 (206)
.+++-||. |.+-.+++.....+-.++||
T Consensus 60 ~vi~~GGD-GT~l~~~~~~~~~~~pv~gi 87 (305)
T PRK02645 60 LAIVLGGD-GTVLAAARHLAPHDIPILSV 87 (305)
T ss_pred EEEEECCc-HHHHHHHHHhccCCCCEEEE
Confidence 44555666 88888888776545444444
No 178
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=38.57 E-value=1e+02 Score=23.98 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=29.0
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 028644 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGG 53 (206)
Q Consensus 14 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GG 53 (206)
+++|.++|..+.+..| .|+.+.+.++..++.+-+.|
T Consensus 2 ~~kVLFVC~gN~cRSp----mAE~l~~~~~~~~~~v~SAG 37 (139)
T COG0394 2 MMKVLFVCTGNICRSP----MAEALLRHLAPDNVEVDSAG 37 (139)
T ss_pred CceEEEEcCCCcccCH----HHHHHHHHhccCCeEEECCc
Confidence 5789999988877554 67889999988888877777
No 179
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=38.51 E-value=53 Score=29.14 Aligned_cols=36 Identities=14% Similarity=0.305 Sum_probs=29.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (206)
++|+|.+|......+.=...|+.+.+.|.+.||.++
T Consensus 4 ~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~ 39 (343)
T PRK14568 4 IKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPF 39 (343)
T ss_pred cEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEE
Confidence 578888777666566666899999999999999886
No 180
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=38.48 E-value=95 Score=24.95 Aligned_cols=39 Identities=5% Similarity=0.095 Sum_probs=27.1
Q ss_pred HccCCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 028644 9 KAMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (206)
Q Consensus 9 ~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (206)
.....++.|+|. |...+..... .|..|+..+|+.|..++
T Consensus 12 ~~~~~~kvI~v~-s~kgG~GKTt--~a~~LA~~la~~G~rVl 50 (204)
T TIGR01007 12 FSGAEIKVLLIT-SVKPGEGKST--TSANIAVAFAQAGYKTL 50 (204)
T ss_pred hhcCCCcEEEEe-cCCCCCCHHH--HHHHHHHHHHhCCCeEE
Confidence 334557788887 4454544433 67889999999998765
No 181
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=38.16 E-value=1.2e+02 Score=26.95 Aligned_cols=70 Identities=17% Similarity=0.112 Sum_probs=42.5
Q ss_pred HHHHHHhhCCeeEEe--cCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcC
Q 028644 103 RKAEMARNSDCFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 180 (206)
Q Consensus 103 Rk~~m~~~sDa~Ivl--pGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 180 (206)
....++..||++|.. |.++|. =+.|++ ..++|||..+..|. ..+ +.+.....+.-.+
T Consensus 293 ~~~~~l~~adv~v~~s~~e~~~~--~llEAm------A~G~PVIas~~~g~-~e~------------i~~~~~G~lv~~~ 351 (396)
T cd03818 293 QYLALLQVSDVHVYLTYPFVLSW--SLLEAM------ACGCLVVGSDTAPV-REV------------ITDGENGLLVDFF 351 (396)
T ss_pred HHHHHHHhCcEEEEcCcccccch--HHHHHH------HCCCCEEEcCCCCc-hhh------------cccCCceEEcCCC
Confidence 344567899998864 344442 266777 37899998776532 221 1112223334456
Q ss_pred CHHHHHHHhHhcc
Q 028644 181 NAKELVQKLEVGF 193 (206)
Q Consensus 181 ~~ee~~~~l~~~~ 193 (206)
|++++.+.|.+..
T Consensus 352 d~~~la~~i~~ll 364 (396)
T cd03818 352 DPDALAAAVIELL 364 (396)
T ss_pred CHHHHHHHHHHHH
Confidence 8999988887765
No 182
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=38.16 E-value=1.9e+02 Score=22.33 Aligned_cols=49 Identities=20% Similarity=0.290 Sum_probs=32.5
Q ss_pred ceEEEEcCCC--CCCChHHHHHHHHHHHHHHHCCCeEEE-----cCCccChhHHHHH
Q 028644 15 KRVCVFCGSS--TGKRNCYRDAALDLGQELVSKKLDLVY-----GGGSVGLMGLVSH 64 (206)
Q Consensus 15 ~~I~Vfggs~--~~~~~~~~~~A~~lG~~lA~~g~~lv~-----GGg~~GlM~a~~~ 64 (206)
+.|.|.-.+. ..+...-.+..++++++|.++|+.+-. +.+. |+...++.
T Consensus 69 r~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~~~~w~~~~~K-GiDD~l~~ 124 (130)
T PF12965_consen 69 REVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVKIITWPPGEGK-GIDDLLAA 124 (130)
T ss_pred ceEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC-CHhHHHHh
Confidence 4555555655 333455557789999999999987632 5555 88877654
No 183
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=37.79 E-value=58 Score=28.76 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=28.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (206)
++|+|.+|......+.=...++.+.+.|.+.||.++
T Consensus 4 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~ 39 (333)
T PRK01966 4 MRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVV 39 (333)
T ss_pred cEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEE
Confidence 478888777665556556899999999999999875
No 184
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=37.79 E-value=90 Score=25.83 Aligned_cols=68 Identities=21% Similarity=0.258 Sum_probs=38.9
Q ss_pred HHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHH
Q 028644 106 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKEL 185 (206)
Q Consensus 106 ~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~ 185 (206)
.++..||++|.-...-|.-.=+.|++ ..++|++.-+..+ ...++ ++ ...+.-.+|++++
T Consensus 264 ~~~~~adi~v~ps~~e~~~~~~~Ea~------a~g~PvI~~~~~~-~~e~~---~~-----------~g~~~~~~~~~~l 322 (365)
T cd03807 264 ALLNALDVFVLSSLSEGFPNVLLEAM------ACGLPVVATDVGD-NAELV---GD-----------TGFLVPPGDPEAL 322 (365)
T ss_pred HHHHhCCEEEeCCccccCCcHHHHHH------hcCCCEEEcCCCC-hHHHh---hc-----------CCEEeCCCCHHHH
Confidence 46788998775322111112255666 3689999876543 22222 11 2234445788888
Q ss_pred HHHhHhccC
Q 028644 186 VQKLEVGFL 194 (206)
Q Consensus 186 ~~~l~~~~~ 194 (206)
.+.|.+...
T Consensus 323 ~~~i~~l~~ 331 (365)
T cd03807 323 AEAIEALLA 331 (365)
T ss_pred HHHHHHHHh
Confidence 888877653
No 185
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=37.57 E-value=69 Score=27.59 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=26.3
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 028644 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (206)
Q Consensus 16 ~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (206)
+|+|.+|......+.=...++++.+.|.+.||.++
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~ 36 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVT 36 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEE
Confidence 57777666555455555899999999999999763
No 186
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=37.50 E-value=1.7e+02 Score=25.38 Aligned_cols=40 Identities=30% Similarity=0.636 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHHhCCCCccEEEEecCccchhHHH-----HHHHHHHcC
Q 028644 123 TLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLN-----FIDKAVDDG 166 (206)
Q Consensus 123 TL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~-----~l~~~~~~g 166 (206)
|++.+++.+.-.+ ...+.|++++ +||+++.. |++.+.+.|
T Consensus 75 ~~~~~~~~~~~~r-~~~~~p~vlm---~Y~N~i~~~G~e~F~~~~~~aG 119 (263)
T CHL00200 75 NLNKILSILSEVN-GEIKAPIVIF---TYYNPVLHYGINKFIKKISQAG 119 (263)
T ss_pred CHHHHHHHHHHHh-cCCCCCEEEE---ecccHHHHhCHHHHHHHHHHcC
Confidence 4666777665444 3467898877 48887665 566666655
No 187
>PRK13337 putative lipid kinase; Reviewed
Probab=37.49 E-value=1.9e+02 Score=25.10 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=21.6
Q ss_pred eEEecCCcCcHHHHHHHHHHHHhCCCCccEEEE
Q 028644 114 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLI 146 (206)
Q Consensus 114 ~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill 146 (206)
.|+.-||=||++|+...+.- . ..+.|+.++
T Consensus 60 ~vvv~GGDGTl~~vv~gl~~--~-~~~~~lgii 89 (304)
T PRK13337 60 LVIAAGGDGTLNEVVNGIAE--K-ENRPKLGII 89 (304)
T ss_pred EEEEEcCCCHHHHHHHHHhh--C-CCCCcEEEE
Confidence 67788999999999987631 1 123577776
No 188
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=37.30 E-value=85 Score=26.24 Aligned_cols=70 Identities=19% Similarity=0.287 Sum_probs=40.1
Q ss_pred HHHHHhhCCeeEEecC--CcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCC
Q 028644 104 KAEMARNSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 181 (206)
Q Consensus 104 k~~m~~~sDa~IvlpG--G~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~ 181 (206)
....+..||++|.-.. |+|. =++|++ ..++||+..+..+. ..++ .+.....+.-.+|
T Consensus 260 ~~~~~~~~d~~l~~s~~e~~~~--~~lEa~------a~g~PvI~~~~~~~-~~~i------------~~~~~g~~~~~~~ 318 (364)
T cd03814 260 LAAAYASADVFVFPSRTETFGL--VVLEAM------ASGLPVVAPDAGGP-ADIV------------TDGENGLLVEPGD 318 (364)
T ss_pred HHHHHHhCCEEEECcccccCCc--HHHHHH------HcCCCEEEcCCCCc-hhhh------------cCCcceEEcCCCC
Confidence 3456788998775422 2332 256666 37899998775532 2211 1122333455667
Q ss_pred HHHHHHHhHhccC
Q 028644 182 AKELVQKLEVGFL 194 (206)
Q Consensus 182 ~ee~~~~l~~~~~ 194 (206)
++++.+.|.+...
T Consensus 319 ~~~l~~~i~~l~~ 331 (364)
T cd03814 319 AEAFAAALAALLA 331 (364)
T ss_pred HHHHHHHHHHHHc
Confidence 7778888877643
No 189
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=37.25 E-value=1.5e+02 Score=25.90 Aligned_cols=57 Identities=18% Similarity=0.341 Sum_probs=38.6
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEEeCC
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPK 79 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~ 79 (206)
+++-| -|++.+ ..+++++.||++|+.||-=+...=-++++++.-....|..+=++|-
T Consensus 7 ~~~lI-TGASsG-------IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~ 63 (265)
T COG0300 7 KTALI-TGASSG-------IGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPA 63 (265)
T ss_pred cEEEE-ECCCch-------HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEEC
Confidence 34444 455554 3357888999999999988887666677776655555555556654
No 190
>PLN02271 serine hydroxymethyltransferase
Probab=37.24 E-value=73 Score=31.06 Aligned_cols=42 Identities=31% Similarity=0.331 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCc----------cChhHHHHHHHHhcCCeEE
Q 028644 33 DAALDLGQELVSKKLDLVYGGGS----------VGLMGLVSHVVHRGGGHVL 74 (206)
Q Consensus 33 ~~A~~lG~~lA~~g~~lv~GGg~----------~GlM~a~~~ga~~~gG~vi 74 (206)
+.|+.|++.|.++|+.||+||-. .|+.+..++..++.-|.++
T Consensus 442 ~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~ 493 (586)
T PLN02271 442 KNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITL 493 (586)
T ss_pred HHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEe
Confidence 34667788888899999998842 3667777777777655443
No 191
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=37.22 E-value=95 Score=26.81 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=22.5
Q ss_pred eEEecCCcCcHHHHHHHHHHHHhC-CCCccEEEEe
Q 028644 114 FIALPGGYGTLEELLEVITWAQLG-IHDKPVGLIN 147 (206)
Q Consensus 114 ~IvlpGG~GTL~El~~~~~~~~~g-~~~kPiill~ 147 (206)
+|+.-||=||++|+...+. +.+ ..+.|+.++-
T Consensus 55 ~vv~~GGDGTi~ev~ngl~--~~~~~~~~~lgiiP 87 (293)
T TIGR03702 55 TVIAGGGDGTLREVATALA--QIRDDAAPALGLLP 87 (293)
T ss_pred EEEEEcCChHHHHHHHHHH--hhCCCCCCcEEEEc
Confidence 6778899999999998873 212 1235788773
No 192
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=37.17 E-value=1.2e+02 Score=27.08 Aligned_cols=72 Identities=10% Similarity=0.158 Sum_probs=43.2
Q ss_pred HHHHHHHhhCCeeEEe---cCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEE-
Q 028644 102 QRKAEMARNSDCFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV- 177 (206)
Q Consensus 102 ~Rk~~m~~~sDa~Ivl---pGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~- 177 (206)
+....++..||++|+- ..|+|.. +.|++ ..++||+.-+.+|. .++ +.+ .....+.
T Consensus 268 ~~l~~~~~~aDv~v~pS~~~E~f~~~--~lEAm------a~G~PVI~s~~gg~-~Ei-------v~~-----~~~G~~l~ 326 (380)
T PRK15484 268 EKMHNYYPLADLVVVPSQVEEAFCMV--AVEAM------AAGKPVLASTKGGI-TEF-------VLE-----GITGYHLA 326 (380)
T ss_pred HHHHHHHHhCCEEEeCCCCccccccH--HHHHH------HcCCCEEEeCCCCc-Hhh-------ccc-----CCceEEEe
Confidence 3445577899998863 2455653 56777 37899999876542 222 111 1112222
Q ss_pred EcCCHHHHHHHhHhccC
Q 028644 178 SAPNAKELVQKLEVGFL 194 (206)
Q Consensus 178 ~~~~~ee~~~~l~~~~~ 194 (206)
-..|++++.+.|.+...
T Consensus 327 ~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 327 EPMTSDSIISDINRTLA 343 (380)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 24688888888877653
No 193
>PRK13059 putative lipid kinase; Reviewed
Probab=37.12 E-value=1.5e+02 Score=25.63 Aligned_cols=33 Identities=27% Similarity=0.707 Sum_probs=23.0
Q ss_pred CCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEe
Q 028644 111 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 147 (206)
Q Consensus 111 sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~ 147 (206)
.| .|+.-||=||++|+...+. +.+ .+.|+.++-
T Consensus 57 ~d-~vi~~GGDGTv~evv~gl~--~~~-~~~~lgviP 89 (295)
T PRK13059 57 YK-YILIAGGDGTVDNVVNAMK--KLN-IDLPIGILP 89 (295)
T ss_pred CC-EEEEECCccHHHHHHHHHH--hcC-CCCcEEEEC
Confidence 45 5668899999999987773 111 246788773
No 194
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=36.84 E-value=1.1e+02 Score=25.13 Aligned_cols=72 Identities=21% Similarity=0.332 Sum_probs=43.1
Q ss_pred HHHHHHhhCCeeEEec--CCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcC
Q 028644 103 RKAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 180 (206)
Q Consensus 103 Rk~~m~~~sDa~Ivlp--GG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 180 (206)
....++..||++|... .|+|+- +.|++ ..++|++.-+..+. .. .+.+ .....+.-.+
T Consensus 271 ~~~~~~~~ad~~i~~~~~~~~~~~--~~Ea~------~~G~pvI~~~~~~~-~~-------~~~~-----~~~g~~~~~~ 329 (377)
T cd03798 271 EVPAYYAAADVFVLPSLREGFGLV--LLEAM------ACGLPVVATDVGGI-PE-------IITD-----GENGLLVPPG 329 (377)
T ss_pred HHHHHHHhcCeeecchhhccCChH--HHHHH------hcCCCEEEecCCCh-HH-------HhcC-----CcceeEECCC
Confidence 3456677899887653 334433 56666 47899988765432 21 1211 1112455567
Q ss_pred CHHHHHHHhHhccCC
Q 028644 181 NAKELVQKLEVGFLF 195 (206)
Q Consensus 181 ~~ee~~~~l~~~~~~ 195 (206)
|++++.+.|.+....
T Consensus 330 ~~~~l~~~i~~~~~~ 344 (377)
T cd03798 330 DPEALAEAILRLLAD 344 (377)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999998888876543
No 195
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=36.71 E-value=84 Score=26.78 Aligned_cols=71 Identities=6% Similarity=0.043 Sum_probs=44.3
Q ss_pred HHHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhC-CCCccEEEEecCc-cchhHHHHHHHHHHcCCCCccccCcEEE
Q 028644 101 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLINVDG-YYNSLLNFIDKAVDDGFISPSQRSILVS 178 (206)
Q Consensus 101 ~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g-~~~kPiill~~~g-~w~~l~~~l~~~~~~gfi~~~~~~~i~~ 178 (206)
.++....++.||.+|+++ |=-++.-+..+.+.. ..+.|++++|.+. .++. ..-+.+
T Consensus 169 ~~~~~~~~~~aDl~lviG----TSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~------------------~~~~~i 226 (244)
T PRK14138 169 LREAIRLSSKASLMIVMG----SSLVVYPAAELPLITVRSGGKLVIVNLGETPLDD------------------IATLKY 226 (244)
T ss_pred HHHHHHHHhcCCEEEEeC----cCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCc------------------ceeEEE
Confidence 456667778899999953 333333333333322 4678999999741 1111 112677
Q ss_pred cCCHHHHHHHhHhcc
Q 028644 179 APNAKELVQKLEVGF 193 (206)
Q Consensus 179 ~~~~ee~~~~l~~~~ 193 (206)
..+.+|++..|.++.
T Consensus 227 ~~~~~~~l~~l~~~~ 241 (244)
T PRK14138 227 NMDVVEFANRVMSEG 241 (244)
T ss_pred eCCHHHHHHHHHHHh
Confidence 899999999987743
No 196
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=36.68 E-value=56 Score=28.02 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=25.6
Q ss_pred CCceEEEEcCCCCCCChHHHHHHHHHHHHHHHC
Q 028644 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSK 45 (206)
Q Consensus 13 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~ 45 (206)
+.++|||||||=++..--+...|+++-+.+.-.
T Consensus 20 ~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld 52 (243)
T PRK06973 20 RPRRIGILGGTFDPIHDGHLALARRFADVLDLT 52 (243)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHHcCCC
Confidence 446799999998877777788888887776643
No 197
>PRK06703 flavodoxin; Provisional
Probab=36.66 E-value=48 Score=25.53 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 028644 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (206)
Q Consensus 14 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (206)
|++|.|+.+|..++.. +.|+.+++.|.+.|+.+
T Consensus 1 mmkv~IiY~S~tGnT~---~iA~~ia~~l~~~g~~v 33 (151)
T PRK06703 1 MAKILIAYASMSGNTE---DIADLIKVSLDAFDHEV 33 (151)
T ss_pred CCeEEEEEECCCchHH---HHHHHHHHHHHhcCCce
Confidence 3456666677766433 46677777776666653
No 198
>PRK08862 short chain dehydrogenase; Provisional
Probab=36.61 E-value=2.1e+02 Score=23.51 Aligned_cols=53 Identities=6% Similarity=-0.049 Sum_probs=28.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEE
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLG 75 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viG 75 (206)
+++.|.|+|+ + ..+++++.|+++|+.|+.-+....-.+.+.+...+.++.+..
T Consensus 6 k~~lVtGas~-G-------IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~ 58 (227)
T PRK08862 6 SIILITSAGS-V-------LGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYS 58 (227)
T ss_pred eEEEEECCcc-H-------HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEE
Confidence 4666666554 1 245677778888888766554433333333333344544443
No 199
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=36.28 E-value=93 Score=25.33 Aligned_cols=50 Identities=22% Similarity=0.389 Sum_probs=30.5
Q ss_pred hhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCc-cchhHHHHHHHHHHcCCC
Q 028644 109 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDG-YYNSLLNFIDKAVDDGFI 168 (206)
Q Consensus 109 ~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g-~w~~l~~~l~~~~~~gfi 168 (206)
+.||. |+=.+|.||.-|. + ..+||.+++--+. +-+.=.++.+++.++|++
T Consensus 79 ~~Adl-VIsHAGaGS~let---L------~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL 129 (170)
T KOG3349|consen 79 RSADL-VISHAGAGSCLET---L------RLGKPLIVVVNDSLMDNHQLELAKQLAEEGYL 129 (170)
T ss_pred hhccE-EEecCCcchHHHH---H------HcCCCEEEEeChHhhhhHHHHHHHHHHhcCcE
Confidence 44554 4457899996554 4 4679988763332 233344445678888765
No 200
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=36.24 E-value=1.4e+02 Score=24.44 Aligned_cols=82 Identities=23% Similarity=0.255 Sum_probs=43.8
Q ss_pred HHhhCCeeEEecCCcCcHHHHHHHHHHHH-hCCCCccEEEEecCccchh------HHHHHHH-HHHcCCCCccccCcEEE
Q 028644 107 MARNSDCFIALPGGYGTLEELLEVITWAQ-LGIHDKPVGLINVDGYYNS------LLNFIDK-AVDDGFISPSQRSILVS 178 (206)
Q Consensus 107 m~~~sDa~IvlpGG~GTL~El~~~~~~~~-~g~~~kPiill~~~g~w~~------l~~~l~~-~~~~gfi~~~~~~~i~~ 178 (206)
+-+...+.|+|+||. |...+++.+.-.. ....-+.|.+++.|.+|=+ -..++++ +.+..-++++ .++.
T Consensus 17 i~~~~~~~i~LsgGs-tp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~v~~~~~~Sn~~~~~~~l~~~~~i~~~---~i~~ 92 (199)
T PF01182_consen 17 IAERGRAVIALSGGS-TPKPLYQELAKLHKERIDWSRVHFFNVDERVVPPDDPDSNYRMLREHLLDPLPIPPE---NIHP 92 (199)
T ss_dssp HHHCSSEEEEE--SC-THHHHHHHHHHHHHTCSCGGGEEEEESEEESSTTTSTTSHHHHHHHHTGGGSGGGGG---GEET
T ss_pred HHHCCCEEEEEcCCH-HHHHHHHHHhhhccccCChhHeEEEeCcccccCCCCCccHHHHHHHHhhccCCCCcc---eEEe
Confidence 345678999999996 4446666665433 2233467888888777721 2233332 3332222222 3442
Q ss_pred ----cCCHHHHHHHhHhc
Q 028644 179 ----APNAKELVQKLEVG 192 (206)
Q Consensus 179 ----~~~~ee~~~~l~~~ 192 (206)
.+|+++..+..++.
T Consensus 93 ~~~~~~~~~~~~~~y~~~ 110 (199)
T PF01182_consen 93 IDGEADDPEEAAERYEQE 110 (199)
T ss_dssp SSTTTSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 35677777666554
No 201
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=36.21 E-value=1.4e+02 Score=26.89 Aligned_cols=63 Identities=21% Similarity=0.292 Sum_probs=36.8
Q ss_pred HHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHHH
Q 028644 107 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELV 186 (206)
Q Consensus 107 m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~ 186 (206)
++-.||.+| ||.||+. .|+. ..+.|.+-... |.+-.+-+ .+.+.|. ++.++|++|++
T Consensus 245 Ll~~a~l~I---g~ggTMa--~EAA------~LGtPaIs~~~-g~~~~vd~---~L~~~Gl--------l~~~~~~~ei~ 301 (335)
T PF04007_consen 245 LLYYADLVI---GGGGTMA--REAA------LLGTPAISCFP-GKLLAVDK---YLIEKGL--------LYHSTDPDEIV 301 (335)
T ss_pred HHHhcCEEE---eCCcHHH--HHHH------HhCCCEEEecC-CcchhHHH---HHHHCCC--------eEecCCHHHHH
Confidence 445566555 4555663 3333 24678875433 23333322 3455554 68899999999
Q ss_pred HHhHhc
Q 028644 187 QKLEVG 192 (206)
Q Consensus 187 ~~l~~~ 192 (206)
+.+.+.
T Consensus 302 ~~v~~~ 307 (335)
T PF04007_consen 302 EYVRKN 307 (335)
T ss_pred HHHHHh
Confidence 988654
No 202
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=36.21 E-value=67 Score=24.76 Aligned_cols=39 Identities=10% Similarity=-0.110 Sum_probs=26.4
Q ss_pred hHHHHHccCCCceEEEEcCCCCCCChHHHHHHHHHHHHHHH
Q 028644 4 NKAAAKAMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVS 44 (206)
Q Consensus 4 ~~~~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~ 44 (206)
.+|++...+ +..+|+||....-.+.|..++..+.+.+..
T Consensus 55 ~~Fle~~~n--~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~ 93 (125)
T TIGR00333 55 ISFLNKKHN--LLRGVAASGNKVWGDNFALAGDVISRKLNV 93 (125)
T ss_pred HHHHHhhhh--cEEEEEEcCCCchHHHHHHHHHHHHHHhCC
Confidence 466766666 688888655443257788777777776655
No 203
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=36.14 E-value=46 Score=26.81 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=17.2
Q ss_pred CceEEEEcCCCCCCChHHHHHHHH
Q 028644 14 FKRVCVFCGSSTGKRNCYRDAALD 37 (206)
Q Consensus 14 ~~~I~Vfggs~~~~~~~~~~~A~~ 37 (206)
|++|||||||=++..--+...|++
T Consensus 1 m~~i~ifGGSFDP~H~GHl~ia~~ 24 (174)
T PRK08887 1 MKKIAVFGSAFNPPSLGHKSVIES 24 (174)
T ss_pred CCeEEEeCCCCCCCCHHHHHHHHH
Confidence 457999999987666566555554
No 204
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=36.13 E-value=1.5e+02 Score=26.79 Aligned_cols=71 Identities=24% Similarity=0.282 Sum_probs=42.5
Q ss_pred HHHHhhCCeeEEec--CC----cCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEE
Q 028644 105 AEMARNSDCFIALP--GG----YGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 178 (206)
Q Consensus 105 ~~m~~~sDa~Ivlp--GG----~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~ 178 (206)
..++..||++|.-. +. -|.-.=+.|++ ..++|||.-+.+|. .+ ++. +.....+.-
T Consensus 293 ~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAm------a~G~PVI~t~~~g~-~E-------~v~-----~~~~G~lv~ 353 (406)
T PRK15427 293 KAMLDDADVFLLPSVTGADGDMEGIPVALMEAM------AVGIPVVSTLHSGI-PE-------LVE-----ADKSGWLVP 353 (406)
T ss_pred HHHHHhCCEEEECCccCCCCCccCccHHHHHHH------hCCCCEEEeCCCCc-hh-------hhc-----CCCceEEeC
Confidence 45778899998632 11 12223367777 37899998876542 11 221 122233444
Q ss_pred cCCHHHHHHHhHhccC
Q 028644 179 APNAKELVQKLEVGFL 194 (206)
Q Consensus 179 ~~~~ee~~~~l~~~~~ 194 (206)
.+|++++.+.|.+...
T Consensus 354 ~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 354 ENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 5789999988887754
No 205
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=36.11 E-value=2.2e+02 Score=24.31 Aligned_cols=43 Identities=26% Similarity=0.314 Sum_probs=27.7
Q ss_pred CCeeEEecCCcCcHHHHHHHHHHHHhC-CCCccEEEEecCccchh
Q 028644 111 SDCFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLINVDGYYNS 154 (206)
Q Consensus 111 sDa~IvlpGG~GTL~El~~~~~~~~~g-~~~kPiill~~~g~w~~ 154 (206)
..+.|+|+|| +|...+++.+.-..-+ ..-+-|.+++.|-+|-+
T Consensus 32 ~~~~l~LsgG-sTP~~~ye~L~~~~~~~~~w~~v~~f~~DEr~vp 75 (238)
T COG0363 32 GRAVLALSGG-STPLALYEALVKLPQGQLDWSKVTIFNLDERVVP 75 (238)
T ss_pred CcEEEEECCC-CCHHHHHHHHHhhhccCCCchheEEEeccccccC
Confidence 3689999998 4777777777543212 22356667777666654
No 206
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=35.97 E-value=9.6 Score=27.65 Aligned_cols=47 Identities=13% Similarity=0.230 Sum_probs=40.8
Q ss_pred HHHHHHHHcCCCCccccCcEEEcCCHHHHHHHhHhccCCccceeecc
Q 028644 157 NFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEVGFLFVSRICFRF 203 (206)
Q Consensus 157 ~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~~~~~~~~~~~~~~ 203 (206)
-+++++...|+|..++-+.|....|+.+=++.|-.+.++-.+.|+++
T Consensus 19 plLD~Ll~n~~it~E~y~~V~a~~T~qdkmRkLld~v~akG~~~k~~ 65 (85)
T cd08324 19 CLVDNLLKNDYFSTEDAEIVCACPTQPDKVRKILDLVQSKGEEVSEY 65 (85)
T ss_pred HHHHHHhccCCccHHHHHHHHhCCCCHHHHHHHHHHHHhcCchHHHH
Confidence 35678899999999999999999999999999999888888887764
No 207
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=35.95 E-value=1e+02 Score=26.12 Aligned_cols=71 Identities=14% Similarity=-0.011 Sum_probs=41.7
Q ss_pred HHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCCHH
Q 028644 104 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAK 183 (206)
Q Consensus 104 k~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~e 183 (206)
...++..||++|.-.---|.-.=++|+++ .++|||.-+..|. ...+ ++ ....+...++++
T Consensus 260 ~~~~~~~adi~v~ps~~E~~~~~~lEAma------~G~PvI~s~~~~~-~~~i---~~----------~~~~~~~~~~~~ 319 (358)
T cd03812 260 VPELLQAMDVFLFPSLYEGLPLVLIEAQA------SGLPCILSDTITK-EVDL---TD----------LVKFLSLDESPE 319 (358)
T ss_pred HHHHHHhcCEEEecccccCCCHHHHHHHH------hCCCEEEEcCCch-hhhh---cc----------CccEEeCCCCHH
Confidence 34467899988754321122223677774 7899999876542 2211 11 122344456679
Q ss_pred HHHHHhHhccC
Q 028644 184 ELVQKLEVGFL 194 (206)
Q Consensus 184 e~~~~l~~~~~ 194 (206)
++.+.|.+...
T Consensus 320 ~~a~~i~~l~~ 330 (358)
T cd03812 320 IWAEEILKLKS 330 (358)
T ss_pred HHHHHHHHHHh
Confidence 99999887753
No 208
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=35.88 E-value=86 Score=26.56 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=31.3
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCe
Q 028644 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGH 72 (206)
Q Consensus 14 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~ 72 (206)
|++++|+|-.+.+ ..|++.+++.||.++.|+.. -.++....+.+-+..
T Consensus 1 m~~~~i~GtGniG---------~alA~~~a~ag~eV~igs~r--~~~~~~a~a~~l~~~ 48 (211)
T COG2085 1 MMIIAIIGTGNIG---------SALALRLAKAGHEVIIGSSR--GPKALAAAAAALGPL 48 (211)
T ss_pred CcEEEEeccChHH---------HHHHHHHHhCCCeEEEecCC--ChhHHHHHHHhhccc
Confidence 5678887643333 46899999999999999864 344444444444433
No 209
>PRK09271 flavodoxin; Provisional
Probab=35.73 E-value=50 Score=25.92 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 028644 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (206)
Q Consensus 16 ~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (206)
+|.|+.+|..++.. +.|+.+.+.|.+.|+.+
T Consensus 2 kv~IvY~S~tGnTe---~~A~~ia~~l~~~g~~v 32 (160)
T PRK09271 2 RILLAYASLSGNTR---EVAREIEERCEEAGHEV 32 (160)
T ss_pred eEEEEEEcCCchHH---HHHHHHHHHHHhCCCee
Confidence 56666677776533 46677777777766654
No 210
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=35.56 E-value=39 Score=30.98 Aligned_cols=29 Identities=34% Similarity=0.559 Sum_probs=18.3
Q ss_pred eEEEcCCccChhHHHHHHHHhcCCeEEEEeC
Q 028644 48 DLVYGGGSVGLMGLVSHVVHRGGGHVLGIIP 78 (206)
Q Consensus 48 ~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P 78 (206)
.||.|||+.|++.|++ |.++|-+|+=|-+
T Consensus 2 VVVvGgG~aG~~AAi~--AAr~G~~VlLiE~ 30 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIA--AARAGAKVLLIEK 30 (428)
T ss_dssp EEEE--SHHHHHHHHH--HHHTTS-EEEE-S
T ss_pred EEEECccHHHHHHHHH--HHHCCCEEEEEEC
Confidence 4799999989887664 4566878777743
No 211
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=35.47 E-value=1.4e+02 Score=24.76 Aligned_cols=72 Identities=18% Similarity=0.273 Sum_probs=43.9
Q ss_pred HHHHHHHhhCCeeEEec---CCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEE
Q 028644 102 QRKAEMARNSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 178 (206)
Q Consensus 102 ~Rk~~m~~~sDa~Ivlp---GG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~ 178 (206)
+...-++..||++|.-. .|+|.- ++|++ ..++|++.-+..+ +..+ +.+ .....++-
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~~--~~Ea~------a~G~Pvi~~~~~~-~~e~-------i~~-----~~~g~~~~ 312 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPLV--IREAL------AAGVPVIASDIGG-MAEL-------VRD-----GVNGLLFP 312 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCChH--HHHHH------HCCCCEEECCCCC-HHHH-------hcC-----CCcEEEEC
Confidence 44455778899887642 444432 56666 4789999877643 2222 111 12233455
Q ss_pred cCCHHHHHHHhHhccC
Q 028644 179 APNAKELVQKLEVGFL 194 (206)
Q Consensus 179 ~~~~ee~~~~l~~~~~ 194 (206)
.+|++++.+.+.+...
T Consensus 313 ~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 313 PGDAEDLAAALERLID 328 (359)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 5678999999887764
No 212
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.27 E-value=2.1e+02 Score=25.35 Aligned_cols=33 Identities=12% Similarity=0.221 Sum_probs=20.2
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 028644 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (206)
Q Consensus 14 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (206)
|++|+|+.- .. .+...+.+.++.++|.++|+.+
T Consensus 1 m~~igiv~n--~~-~~~~~~~~~~l~~~L~~~g~~v 33 (305)
T PRK02649 1 MPKAGIIYN--DG-KPLAVRTAEELQDKLEAAGWEV 33 (305)
T ss_pred CCEEEEEEc--CC-CHHHHHHHHHHHHHHHHCCCEE
Confidence 457888843 22 3445567778887776665433
No 213
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.19 E-value=2.2e+02 Score=24.66 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=35.6
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe--------EEEcCCccChhHHHHHHHHh--cCCeEEEE
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLD--------LVYGGGSVGLMGLVSHVVHR--GGGHVLGI 76 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~--------lv~GGg~~GlM~a~~~ga~~--~gG~viGv 76 (206)
|+|+|+. + . ++.-.+.+.++-++|.+.|+. +++=||. |-|=-+++-+.. .+-.++||
T Consensus 1 M~i~Ii~--~-~-~~~~~~~~~~l~~~l~~~g~~~~~~~~Dlvi~iGGD-GT~L~a~~~~~~~~~~iPilGI 67 (265)
T PRK04885 1 MKVAIIS--N-G-DPKSKRVASKLKKYLKDFGFILDEKNPDIVISVGGD-GTLLSAFHRYENQLDKVRFVGV 67 (265)
T ss_pred CEEEEEe--C-C-CHHHHHHHHHHHHHHHHcCCccCCcCCCEEEEECCc-HHHHHHHHHhcccCCCCeEEEE
Confidence 3588883 3 2 455667888999988776542 2334445 777666665544 35566776
No 214
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=35.12 E-value=3.2e+02 Score=24.14 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=26.3
Q ss_pred CCCeEEEcCCccChhHHHHHHHHhcCCeEEEEeC
Q 028644 45 KKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIP 78 (206)
Q Consensus 45 ~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P 78 (206)
....||+||.. |+=-.+..=|+..|..++.+.-
T Consensus 143 g~~VLV~gaaG-gVG~~aiQlAk~~G~~~v~~~~ 175 (326)
T COG0604 143 GETVLVHGAAG-GVGSAAIQLAKALGATVVAVVS 175 (326)
T ss_pred CCEEEEecCCc-hHHHHHHHHHHHcCCcEEEEec
Confidence 35688999885 9988899999999887777753
No 215
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=35.12 E-value=73 Score=27.28 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=26.6
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (206)
++|+|.+|+.......-.+.++++-+.|.+.||.++.
T Consensus 5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~ 41 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHP 41 (304)
T ss_pred cEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEE
Confidence 3788887765544333346789999999999998744
No 216
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=35.06 E-value=2.7e+02 Score=23.36 Aligned_cols=89 Identities=22% Similarity=0.227 Sum_probs=54.2
Q ss_pred HHHHHHHH-CCCeEEEcCCccChhHHHHHHHHhc-CCeEEEEeCCcccccccCCCCCceeeccCCHHHHHHHHHhhCCee
Q 028644 37 DLGQELVS-KKLDLVYGGGSVGLMGLVSHVVHRG-GGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCF 114 (206)
Q Consensus 37 ~lG~~lA~-~g~~lv~GGg~~GlM~a~~~ga~~~-gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~ 114 (206)
+.-+.|++ +|..+|+|-|+.|+++-.--.-+.+ |-.+.-|=|... .+- ++- |+..-|.+
T Consensus 30 ~a~~~i~~~~gkv~V~G~GkSG~Igkk~Aa~L~s~G~~a~fv~p~ea-----~hg---dlg-----------~i~~~Dvv 90 (202)
T COG0794 30 RAVELILECKGKVFVTGVGKSGLIGKKFAARLASTGTPAFFVGPAEA-----LHG---DLG-----------MITPGDVV 90 (202)
T ss_pred HHHHHHHhcCCcEEEEcCChhHHHHHHHHHHHHccCCceEEecCchh-----ccC---Ccc-----------CCCCCCEE
Confidence 33444454 8999999999999998665544544 445544434321 111 111 45667888
Q ss_pred EEecCCcCcHHHHHHHHHHHHhCCCCccEEEEe
Q 028644 115 IALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 147 (206)
Q Consensus 115 IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~ 147 (206)
|++.| .|--.|+..++...+ ..+.|++.+.
T Consensus 91 iaiS~-SGeT~el~~~~~~aK--~~g~~liaiT 120 (202)
T COG0794 91 IAISG-SGETKELLNLAPKAK--RLGAKLIAIT 120 (202)
T ss_pred EEEeC-CCcHHHHHHHHHHHH--HcCCcEEEEe
Confidence 88775 466677877665443 3456777764
No 217
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=35.02 E-value=81 Score=26.55 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCc
Q 028644 33 DAALDLGQELVSKKLDLVYGGGS 55 (206)
Q Consensus 33 ~~A~~lG~~lA~~g~~lv~GGg~ 55 (206)
+.-+++++.+...|..+|.|+.+
T Consensus 203 ~~q~~~a~~lidaGaDiIiG~Hp 225 (250)
T PF09587_consen 203 PEQRELARALIDAGADIIIGHHP 225 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCC
Confidence 34467899999999999999987
No 218
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=34.95 E-value=3.1e+02 Score=23.88 Aligned_cols=30 Identities=30% Similarity=0.414 Sum_probs=19.9
Q ss_pred CCeEEEcCCccChhHHHHHHHHhcCCeEEEEe
Q 028644 46 KLDLVYGGGSVGLMGLVSHVVHRGGGHVLGII 77 (206)
Q Consensus 46 g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~ 77 (206)
...+|+|+|+.|++ +..-|+..|.+++.+.
T Consensus 168 ~~VlV~G~G~vG~~--a~~~a~~~G~~vi~~~ 197 (349)
T TIGR03201 168 DLVIVIGAGGVGGY--MVQTAKAMGAAVVAID 197 (349)
T ss_pred CEEEEECCCHHHHH--HHHHHHHcCCeEEEEc
Confidence 45678887655544 5566677788887763
No 219
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=34.68 E-value=86 Score=28.87 Aligned_cols=73 Identities=10% Similarity=0.056 Sum_probs=41.8
Q ss_pred ChhHHHHHHHHhcC-CeEEEEeCCcccccccCCCCCceee-------ccCCHHHHHHHHHhhCCeeEEecCCcCcHHHHH
Q 028644 57 GLMGLVSHVVHRGG-GHVLGIIPKTLMNKEITGETVGEVK-------PVADMHQRKAEMARNSDCFIALPGGYGTLEELL 128 (206)
Q Consensus 57 GlM~a~~~ga~~~g-G~viGv~P~~~~~~e~~~~~~~~~~-------~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~ 128 (206)
|--..+.+--.++| ..+.||++......+.+..--.+.+ +.+...++...+++.||++|..+--+|+-.++.
T Consensus 277 ~~~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~~~~~ 356 (402)
T PRK09536 277 QPAARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAARSGVI 356 (402)
T ss_pred CcHHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCCCCch
Confidence 33444555555555 4568888765433322111001111 123446788899999999999876666665554
Q ss_pred H
Q 028644 129 E 129 (206)
Q Consensus 129 ~ 129 (206)
.
T Consensus 357 ~ 357 (402)
T PRK09536 357 G 357 (402)
T ss_pred h
Confidence 4
No 220
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=34.62 E-value=1e+02 Score=26.63 Aligned_cols=70 Identities=23% Similarity=0.277 Sum_probs=41.2
Q ss_pred HHHHHhhCCeeEEe--cCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCC
Q 028644 104 KAEMARNSDCFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 181 (206)
Q Consensus 104 k~~m~~~sDa~Ivl--pGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~ 181 (206)
...++..||++|.- ..|+|.- ++|++ ..++||+..+..| ... ++++ .....+.-.+|
T Consensus 296 ~~~~~~~adi~l~ps~~e~~~~~--l~Ea~------a~G~Pvi~s~~~~-~~e-------~i~~-----~~~g~~~~~~~ 354 (398)
T cd03800 296 LPALYRAADVFVNPALYEPFGLT--ALEAM------ACGLPVVATAVGG-PRD-------IVVD-----GVTGLLVDPRD 354 (398)
T ss_pred HHHHHHhCCEEEecccccccCcH--HHHHH------hcCCCEEECCCCC-HHH-------HccC-----CCCeEEeCCCC
Confidence 34467789998743 2445543 56776 3789998876543 222 2211 12223333468
Q ss_pred HHHHHHHhHhccC
Q 028644 182 AKELVQKLEVGFL 194 (206)
Q Consensus 182 ~ee~~~~l~~~~~ 194 (206)
++++.+.|.+...
T Consensus 355 ~~~l~~~i~~l~~ 367 (398)
T cd03800 355 PEALAAALRRLLT 367 (398)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888877653
No 221
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.
Probab=34.40 E-value=82 Score=23.01 Aligned_cols=38 Identities=26% Similarity=0.340 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHH----CCCeE---EEcCCc-cChhHHHHHHHHhcC
Q 028644 33 DAALDLGQELVS----KKLDL---VYGGGS-VGLMGLVSHVVHRGG 70 (206)
Q Consensus 33 ~~A~~lG~~lA~----~g~~l---v~GGg~-~GlM~a~~~ga~~~g 70 (206)
+.|..+|+.||+ .|+.- =-|+.. .|-+.|+++++.++|
T Consensus 57 ~aA~~vG~~la~r~~~~gi~~vv~D~~~~~~~grv~a~~~~~r~~G 102 (103)
T cd00432 57 EAAYLVGRLLAKRALEKGIKKVVFDRGGYRYHGRVKALAKGAREGG 102 (103)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCCCcccccHHHHHHHHHHHcC
Confidence 678888888887 34422 224433 589999999999876
No 222
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=34.25 E-value=1.1e+02 Score=24.93 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=46.0
Q ss_pred HHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCc--cc---ccccCCCCCcee----eccCCHHHHHHHHH
Q 028644 38 LGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKT--LM---NKEITGETVGEV----KPVADMHQRKAEMA 108 (206)
Q Consensus 38 lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~--~~---~~e~~~~~~~~~----~~~~~~~~Rk~~m~ 108 (206)
+-+.+...+..|-|||| =+|-.-++.++...|.||=+--+. +. ..+...+.+.+. .+.+-|.+|+.+.-
T Consensus 65 l~~l~~~~~~ViaTGGG--~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~ 142 (172)
T COG0703 65 LKELLEEDNAVIATGGG--AVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYR 142 (172)
T ss_pred HHHHhhcCCeEEECCCc--cccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHH
Confidence 34444445678888887 578888888999888777662111 11 111111111111 12345578888877
Q ss_pred hhCCeeEEecCCc
Q 028644 109 RNSDCFIALPGGY 121 (206)
Q Consensus 109 ~~sDa~IvlpGG~ 121 (206)
+.||.++-.....
T Consensus 143 e~a~~~~~~~~~~ 155 (172)
T COG0703 143 EVADFIIDTDDRS 155 (172)
T ss_pred HhCcEEecCCCCc
Confidence 7766666555544
No 223
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=34.11 E-value=86 Score=26.19 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=17.3
Q ss_pred HHHHHHHHHCCCeEEEcCCc
Q 028644 36 LDLGQELVSKKLDLVYGGGS 55 (206)
Q Consensus 36 ~~lG~~lA~~g~~lv~GGg~ 55 (206)
+++++.|++.|..+|.||.+
T Consensus 195 ~~~A~~l~~~G~DvIiG~H~ 214 (239)
T smart00854 195 RELAHALIDAGADVVIGHHP 214 (239)
T ss_pred HHHHHHHHHcCCCEEEcCCC
Confidence 67888888899999999887
No 224
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=34.07 E-value=58 Score=26.23 Aligned_cols=41 Identities=29% Similarity=0.384 Sum_probs=22.9
Q ss_pred hhCCeeEEecCC-----cCcHHHHHHHHHHHHhC-CCCccEEEEecC
Q 028644 109 RNSDCFIALPGG-----YGTLEELLEVITWAQLG-IHDKPVGLINVD 149 (206)
Q Consensus 109 ~~sDa~IvlpGG-----~GTL~El~~~~~~~~~g-~~~kPiill~~~ 149 (206)
..+|.+|+.+|| ..+.......+.+.... ..++|+++++.+
T Consensus 62 ~~~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~g 108 (286)
T PF04230_consen 62 KNADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQG 108 (286)
T ss_pred ccCCeEEEECCcccccCCCcchhhHHHHHHHHHHHhcCCCeEEECce
Confidence 567778887775 22222221222233322 478999999764
No 225
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=34.07 E-value=39 Score=27.96 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=31.7
Q ss_pred hhCCeeEEecCCcCcHHHHHHHHHHHHhC----------CCCccEEEEecCccchhHHHHHHHH
Q 028644 109 RNSDCFIALPGGYGTLEELLEVITWAQLG----------IHDKPVGLINVDGYYNSLLNFIDKA 162 (206)
Q Consensus 109 ~~sDa~IvlpGG~GTL~El~~~~~~~~~g----------~~~kPiill~~~g~w~~l~~~l~~~ 162 (206)
+.+--+|=.--|.---.-++.++-+...+ +..+|+|==|. |||+.+++.=.++
T Consensus 93 ~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~-GFw~QLi~YE~qL 155 (198)
T KOG1718|consen 93 RGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNV-GFWRQLIDYEQQL 155 (198)
T ss_pred cCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCc-cHHHHHHHHHHHh
Confidence 33444555555555444566655433322 24689987665 7999999865454
No 226
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.00 E-value=50 Score=29.47 Aligned_cols=27 Identities=33% Similarity=0.573 Sum_probs=18.3
Q ss_pred CCCeEEEcCCccChhHHHHHHHHhcCCe
Q 028644 45 KKLDLVYGGGSVGLMGLVSHVVHRGGGH 72 (206)
Q Consensus 45 ~g~~lv~GGg~~GlM~a~~~ga~~~gG~ 72 (206)
.+..|+||||. |+=.+.+....+.|..
T Consensus 38 g~~vLITGgg~-GlGr~ialefa~rg~~ 64 (300)
T KOG1201|consen 38 GEIVLITGGGS-GLGRLIALEFAKRGAK 64 (300)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHhCCe
Confidence 45667777775 7777777766666653
No 227
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=33.98 E-value=2.4e+02 Score=22.39 Aligned_cols=66 Identities=18% Similarity=0.112 Sum_probs=40.6
Q ss_pred HHHHHccCCCceEEEEcCCCCCCChHH----------------HHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHh
Q 028644 5 KAAAKAMSRFKRVCVFCGSSTGKRNCY----------------RDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHR 68 (206)
Q Consensus 5 ~~~~~~~~~~~~I~Vfggs~~~~~~~~----------------~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~ 68 (206)
+++.......++|+|++..+...+-.. .+..+..-+.+.+.|+.++-||+. +.+-|.+
T Consensus 68 ~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~------~~~~A~~ 141 (176)
T PF06506_consen 68 RALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGV------VCRLARK 141 (176)
T ss_dssp HHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHH------HHHHHHH
T ss_pred HHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHH------HHHHHHH
Confidence 345566666789999987665432111 133455566777899999999964 4677777
Q ss_pred cCCeEEEE
Q 028644 69 GGGHVLGI 76 (206)
Q Consensus 69 ~gG~viGv 76 (206)
.|-.++=+
T Consensus 142 ~gl~~v~i 149 (176)
T PF06506_consen 142 LGLPGVLI 149 (176)
T ss_dssp TTSEEEES
T ss_pred cCCcEEEE
Confidence 88775433
No 228
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=33.96 E-value=1.8e+02 Score=24.12 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=42.0
Q ss_pred HHHHHHhhCCeeEEec--CCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcC
Q 028644 103 RKAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 180 (206)
Q Consensus 103 Rk~~m~~~sDa~Ivlp--GG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 180 (206)
...-++..||++|.-. .|+|+- +.|++ ..++|++..+..| +..++. + . ..+.+.+
T Consensus 274 ~~~~~~~~adv~v~ps~~e~~~~~--~~Eam------a~G~PvI~~~~~~-~~~~~~---~--~---------~~~~~~~ 330 (375)
T cd03821 274 DKAAALADADLFVLPSHSENFGIV--VAEAL------ACGTPVVTTDKVP-WQELIE---Y--G---------CGWVVDD 330 (375)
T ss_pred HHHHHHhhCCEEEeccccCCCCcH--HHHHH------hcCCCEEEcCCCC-HHHHhh---c--C---------ceEEeCC
Confidence 3444667899987653 455553 67777 4789999877643 232221 1 1 2244556
Q ss_pred CHHHHHHHhHhccC
Q 028644 181 NAKELVQKLEVGFL 194 (206)
Q Consensus 181 ~~ee~~~~l~~~~~ 194 (206)
+++++.+.|.+...
T Consensus 331 ~~~~~~~~i~~l~~ 344 (375)
T cd03821 331 DVDALAAALRRALE 344 (375)
T ss_pred ChHHHHHHHHHHHh
Confidence 66888888877643
No 229
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.61 E-value=90 Score=27.72 Aligned_cols=53 Identities=26% Similarity=0.374 Sum_probs=34.4
Q ss_pred hhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecC--ccc-----hhHHHHHHHHHHcCC
Q 028644 109 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD--GYY-----NSLLNFIDKAVDDGF 167 (206)
Q Consensus 109 ~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~--g~w-----~~l~~~l~~~~~~gf 167 (206)
+.+|.+|++ ||=||+-..+..+ ...++||+=.|.+ ||. +++.+.++++.+..|
T Consensus 67 ~~~Dlvi~i-GGDGTlL~aar~~-----~~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 67 SSMKFAIVL-GGDGTVLSAARQL-----APCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQY 126 (305)
T ss_pred cCcCEEEEE-eCcHHHHHHHHHh-----cCCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcCCc
Confidence 356766555 7899986555443 2457899888764 565 556666777665554
No 230
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=33.37 E-value=1.5e+02 Score=25.94 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=26.2
Q ss_pred HHHHHHhhCCeeEEecCCcCcHHHHHHHHHHH
Q 028644 103 RKAEMARNSDCFIALPGGYGTLEELLEVITWA 134 (206)
Q Consensus 103 Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~ 134 (206)
--+++.+.++.-|++.+|+||-+....++.+.
T Consensus 180 ~l~~i~e~~~vpVivdAGIgt~sDa~~AmElG 211 (267)
T CHL00162 180 NLQIIIENAKIPVIIDAGIGTPSEASQAMELG 211 (267)
T ss_pred HHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcC
Confidence 35667788999999999999999998888543
No 231
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=33.30 E-value=1.3e+02 Score=23.76 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHCCCeEE
Q 028644 31 YRDAALDLGQELVSKKLDLV 50 (206)
Q Consensus 31 ~~~~A~~lG~~lA~~g~~lv 50 (206)
|....+.+-+.|.+.|..+|
T Consensus 96 f~~a~~~l~~~l~~~G~~~i 115 (167)
T TIGR01752 96 FCDGMGILYDKIKARGAKVV 115 (167)
T ss_pred HHHHHHHHHHHHHHcCCeEE
Confidence 33444444444544555444
No 232
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=33.05 E-value=1e+02 Score=23.32 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (206)
|.|+|++ +..+.... ..|..+++.||+.|..+
T Consensus 1 k~i~v~s-~~~g~G~t--~~a~~lA~~la~~~~~V 32 (157)
T PF13614_consen 1 KVIAVWS-PKGGVGKT--TLALNLAAALARKGKKV 32 (157)
T ss_dssp EEEEEEE-SSTTSSHH--HHHHHHHHHHHHTTT-E
T ss_pred CEEEEEC-CCCCCCHH--HHHHHHHHHHHhcCCCe
Confidence 3577774 33332222 46788888898887644
No 233
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=33.03 E-value=60 Score=27.95 Aligned_cols=39 Identities=18% Similarity=0.102 Sum_probs=26.2
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 028644 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGG 54 (206)
Q Consensus 16 ~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg 54 (206)
+|+|+||......+.=...++.+-+.|.+.||.++.-..
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~~ 39 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVDI 39 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEee
Confidence 466766655443332236889999999999998754443
No 234
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=33.01 E-value=2.1e+02 Score=21.39 Aligned_cols=51 Identities=12% Similarity=0.359 Sum_probs=27.5
Q ss_pred HHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHH
Q 028644 107 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVD 164 (206)
Q Consensus 107 m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~ 164 (206)
+++.+|++|=+. +.+.+.+.+.... .+++|+++ ++.||-+.-++.++.+.+
T Consensus 64 ~~~~~DVvIDfT----~p~~~~~~~~~~~--~~g~~~Vi-GTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 64 LLEEADVVIDFT----NPDAVYDNLEYAL--KHGVPLVI-GTTGFSDEQIDELEELAK 114 (124)
T ss_dssp HTTH-SEEEEES-----HHHHHHHHHHHH--HHT-EEEE-E-SSSHHHHHHHHHHHTT
T ss_pred hcccCCEEEEcC----ChHHhHHHHHHHH--hCCCCEEE-ECCCCCHHHHHHHHHHhc
Confidence 445599999988 3333333332211 46788876 566776666676766543
No 235
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=32.99 E-value=1.6e+02 Score=26.96 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=44.1
Q ss_pred HHHHHHHhhCCeeEEec--CCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEc
Q 028644 102 QRKAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 179 (206)
Q Consensus 102 ~Rk~~m~~~sDa~Ivlp--GG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~ 179 (206)
+....++..||++|.-. .|+|. =++|+++ .++|||..+.+|. .++++ +. .......++-.
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~--~vlEAmA------~G~PVI~s~~gg~-~eiv~-------~~--~~~~~G~lv~~ 384 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGF--VVLEAMA------SGVPVVAARAGGI-PDIIP-------PD--QEGKTGFLYTP 384 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCc--HHHHHHH------cCCCEEEcCCCCc-Hhhhh-------cC--CCCCceEEeCC
Confidence 34556778999988542 23443 2567773 7899998876542 22221 10 00122334445
Q ss_pred CCHHHHHHHhHhccC
Q 028644 180 PNAKELVQKLEVGFL 194 (206)
Q Consensus 180 ~~~ee~~~~l~~~~~ 194 (206)
+|++++.+.|.+...
T Consensus 385 ~d~~~la~~i~~ll~ 399 (465)
T PLN02871 385 GDVDDCVEKLETLLA 399 (465)
T ss_pred CCHHHHHHHHHHHHh
Confidence 789999888877653
No 236
>PRK13054 lipid kinase; Reviewed
Probab=32.94 E-value=1.2e+02 Score=26.23 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=22.6
Q ss_pred CCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEE
Q 028644 111 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLI 146 (206)
Q Consensus 111 sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill 146 (206)
.| .|+.-||=||++|+...+.-.. ...+.|+.++
T Consensus 57 ~d-~vvv~GGDGTl~evv~~l~~~~-~~~~~~lgii 90 (300)
T PRK13054 57 VA-TVIAGGGDGTINEVATALAQLE-GDARPALGIL 90 (300)
T ss_pred CC-EEEEECCccHHHHHHHHHHhhc-cCCCCcEEEE
Confidence 35 5668899999999998773211 1123577776
No 237
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=32.88 E-value=1.5e+02 Score=25.36 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEcCCccChhHH
Q 028644 29 NCYRDAALDLGQELVSKKLDLVYGGGSVGLMGL 61 (206)
Q Consensus 29 ~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a 61 (206)
|...+.+..+.+.|.+.|..+++|.|..|.+..
T Consensus 33 ~~I~~av~~~~~~l~~ggrl~~~GaGtSg~la~ 65 (257)
T cd05007 33 PQIARAVDAAAERLRAGGRLIYVGAGTSGRLGV 65 (257)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEcCcHHHHHHH
Confidence 456677788888898888888999888777653
No 238
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=32.83 E-value=1.4e+02 Score=27.78 Aligned_cols=86 Identities=19% Similarity=0.176 Sum_probs=47.0
Q ss_pred CeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceeeccCCHHHHHHHHHhhCCeeEEecCCcCcHHH
Q 028644 47 LDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEE 126 (206)
Q Consensus 47 ~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~E 126 (206)
-.+|.|.|+.|.. ++..+...|.+|+.+-.+.....+.....+ .+.++. . .+..+|.+|...|..+.+++
T Consensus 197 ~VvViG~G~IG~~--vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~----~v~~le---e-al~~aDVVItaTG~~~vI~~ 266 (406)
T TIGR00936 197 TVVVAGYGWCGKG--IAMRARGMGARVIVTEVDPIRALEAAMDGF----RVMTME---E-AAKIGDIFITATGNKDVIRG 266 (406)
T ss_pred EEEEECCCHHHHH--HHHHHhhCcCEEEEEeCChhhHHHHHhcCC----EeCCHH---H-HHhcCCEEEECCCCHHHHHH
Confidence 3457788876655 455566778888887322211111111111 122332 2 35789999999988777764
Q ss_pred -HHHHHHHHHhCCCCccEEEEecCc
Q 028644 127 -LLEVITWAQLGIHDKPVGLINVDG 150 (206)
Q Consensus 127 -l~~~~~~~~~g~~~kPiill~~~g 150 (206)
.+..+ +.-.++.|.+.
T Consensus 267 ~~~~~m--------K~GailiN~G~ 283 (406)
T TIGR00936 267 EHFENM--------KDGAIVANIGH 283 (406)
T ss_pred HHHhcC--------CCCcEEEEECC
Confidence 44332 33345666643
No 239
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=32.70 E-value=3e+02 Score=24.12 Aligned_cols=73 Identities=18% Similarity=0.395 Sum_probs=40.9
Q ss_pred HHHHHHHCCCeEEE---cCCc-cChhHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceeeccCCHHHHHHHHHhhCCe
Q 028644 38 LGQELVSKKLDLVY---GGGS-VGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDC 113 (206)
Q Consensus 38 lG~~lA~~g~~lv~---GGg~-~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa 113 (206)
+-+.|-.....+|+ |||. .|.--.+++-+.+.|-.+++|.|..+. .|.. ....+=...-..|.+.+|.
T Consensus 78 I~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~-~Eg~-------~~~~nA~~~l~~L~~~~d~ 149 (304)
T cd02201 78 IKEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFS-FEGK-------KRMRQAEEGLEELRKHVDT 149 (304)
T ss_pred HHHHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCcc-ccch-------hHHHHHHHHHHHHHHhCCE
Confidence 34444445666666 5543 356666778888888888888653321 1110 1111112344556677888
Q ss_pred eEEec
Q 028644 114 FIALP 118 (206)
Q Consensus 114 ~Ivlp 118 (206)
+|+++
T Consensus 150 ~ivid 154 (304)
T cd02201 150 LIVIP 154 (304)
T ss_pred EEEEe
Confidence 88887
No 240
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=32.50 E-value=1.7e+02 Score=25.56 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=37.4
Q ss_pred HHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEE-ecCccchhHHHHHHHHHHcCCCCccccCcEEEcCC
Q 028644 103 RKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLI-NVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 181 (206)
Q Consensus 103 Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill-~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~ 181 (206)
+...++..||++|. +.| +. +.|++ ..++|++.. +..+ +..+ ++.| ..+.+..|
T Consensus 267 ~~~~~l~~ad~vv~-~Sg--~~--~~EA~------a~g~PvI~~~~~~~-~~e~-------~~~g-------~~~lv~~d 320 (365)
T TIGR00236 267 DFLNLAANSHLILT-DSG--GV--QEEAP------SLGKPVLVLRDTTE-RPET-------VEAG-------TNKLVGTD 320 (365)
T ss_pred HHHHHHHhCCEEEE-CCh--hH--HHHHH------HcCCCEEECCCCCC-ChHH-------HhcC-------ceEEeCCC
Confidence 34456677887754 433 33 34555 368999986 3333 3221 1111 12344578
Q ss_pred HHHHHHHhHhcc
Q 028644 182 AKELVQKLEVGF 193 (206)
Q Consensus 182 ~ee~~~~l~~~~ 193 (206)
++++.+.+.+..
T Consensus 321 ~~~i~~ai~~ll 332 (365)
T TIGR00236 321 KENITKAAKRLL 332 (365)
T ss_pred HHHHHHHHHHHH
Confidence 999998888765
No 241
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=32.37 E-value=3e+02 Score=23.04 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=27.4
Q ss_pred hhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccc
Q 028644 109 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYY 152 (206)
Q Consensus 109 ~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w 152 (206)
+...+.|+|+||. |...+++.++-. ...-.-+.++..|.+|
T Consensus 26 ~~~~~~lalsGGs-tp~~~y~~L~~~--~i~w~~v~~f~~DER~ 66 (233)
T TIGR01198 26 ERGQFSLALSGGR-SPIALLEALAAQ--PLDWSRIHLFLGDERY 66 (233)
T ss_pred hcCcEEEEECCCc-cHHHHHHHHhhC--CCCcceEEEEEecccc
Confidence 4567899999985 666777777632 2233556666666666
No 242
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=32.18 E-value=1.8e+02 Score=25.16 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=40.9
Q ss_pred HHHHhhCCeeEEec--CCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 028644 105 AEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNA 182 (206)
Q Consensus 105 ~~m~~~sDa~Ivlp--GG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ 182 (206)
..++..||+++..+ -|+|.. +.|++ ..++||+..+..|. .++ +.++ ..-+.+..|+
T Consensus 294 ~~~l~~ad~~l~~s~~E~~g~~--~lEAm------a~G~PvI~s~~~~~-~e~-------i~~~------~~g~~~~~~~ 351 (392)
T cd03805 294 ELLLSSARALLYTPSNEHFGIV--PLEAM------YAGKPVIACNSGGP-LET-------VVDG------ETGFLCEPTP 351 (392)
T ss_pred HHHHhhCeEEEECCCcCCCCch--HHHHH------HcCCCEEEECCCCc-HHH-------hccC------CceEEeCCCH
Confidence 45678899988643 334443 46776 37899999887542 222 1111 1224445688
Q ss_pred HHHHHHhHhcc
Q 028644 183 KELVQKLEVGF 193 (206)
Q Consensus 183 ee~~~~l~~~~ 193 (206)
+++.+.|.+..
T Consensus 352 ~~~a~~i~~l~ 362 (392)
T cd03805 352 EEFAEAMLKLA 362 (392)
T ss_pred HHHHHHHHHHH
Confidence 88888887654
No 243
>PF09353 DUF1995: Domain of unknown function (DUF1995); InterPro: IPR018962 This family of proteins are functionally uncharacterised.
Probab=32.13 E-value=2.9e+02 Score=22.70 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=23.8
Q ss_pred CCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhH
Q 028644 111 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSL 155 (206)
Q Consensus 111 sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l 155 (206)
.|++|++.=..-+++++-...... ..+|+|++|. -|++.
T Consensus 98 ~~~~vvv~p~~~~l~~~e~~~~~~----~~rpvvl~Np--~l~~~ 136 (209)
T PF09353_consen 98 DDILVVVAPSPQELDDVEKLCEAA----GGRPVVLLNP--QLEDV 136 (209)
T ss_pred CCEEEEEECChhhHHHHHHHHHhc----CCCeEEEEec--ccccC
Confidence 576666655555577665555321 2489999994 56643
No 244
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=32.08 E-value=75 Score=27.76 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=27.7
Q ss_pred HHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhC-CCCccEEEEecC
Q 028644 105 AEMARNSDCFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLINVD 149 (206)
Q Consensus 105 ~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g-~~~kPiill~~~ 149 (206)
..++..||++++|+-..=+++ .+...... ..++||.++|++
T Consensus 241 ~~~v~e~dg~LvlGsSL~v~S----g~r~i~~a~~~k~pi~IvNIG 282 (305)
T KOG2683|consen 241 MEKVKECDGFLVLGSSLMVLS----GFRFIRHAHEKKKPIAIVNIG 282 (305)
T ss_pred HHHHhccCceEEechhHHHHH----HHHHHHHHHhhcCcEEEEecC
Confidence 346778999999966555444 34333333 357899999985
No 245
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=31.93 E-value=2.1e+02 Score=23.22 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEcCCccCh
Q 028644 29 NCYRDAALDLGQELVSKKLDLVYGGGSVGL 58 (206)
Q Consensus 29 ~~~~~~A~~lG~~lA~~g~~lv~GGg~~Gl 58 (206)
+...+.++.+.+.+.+.+...++|-|..+.
T Consensus 28 ~~i~~a~~~i~~al~~~~rI~i~G~G~S~~ 57 (192)
T PRK00414 28 HAIQRAAVLIADSFKAGGKVLSCGNGGSHC 57 (192)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 455566666666666679999999987544
No 246
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=31.47 E-value=2e+02 Score=28.71 Aligned_cols=46 Identities=13% Similarity=0.054 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEE
Q 028644 30 CYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 30 ~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 76 (206)
.+...+.-+...|+..|+.+++|++. --.+.+++.|.+.+..++++
T Consensus 594 ~H~~ra~fv~~~l~~~GfeV~~~~~~-~s~e~~v~aa~~~~a~ivvl 639 (714)
T PRK09426 594 GHDRGAKVIATAFADLGFDVDIGPLF-QTPEEAARQAVENDVHVVGV 639 (714)
T ss_pred chhHhHHHHHHHHHhCCeeEecCCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 46667777888899999999988865 56778999999999999998
No 247
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=31.33 E-value=1.4e+02 Score=27.92 Aligned_cols=86 Identities=21% Similarity=0.263 Sum_probs=45.1
Q ss_pred eEEEcCCccChhHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceeeccCCHHHHHHHHHhhCCeeEEecCCcCcHH-H
Q 028644 48 DLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLE-E 126 (206)
Q Consensus 48 ~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~-E 126 (206)
.+|.|.|+.|. .++.-+...|.+|+.+-.+.....+.....+ + +.++. -.++.+|.+|...|-.++++ +
T Consensus 215 VlViG~G~IG~--~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~-~---v~~l~----eal~~aDVVI~aTG~~~vI~~~ 284 (425)
T PRK05476 215 VVVAGYGDVGK--GCAQRLRGLGARVIVTEVDPICALQAAMDGF-R---VMTME----EAAELGDIFVTATGNKDVITAE 284 (425)
T ss_pred EEEECCCHHHH--HHHHHHHhCCCEEEEEcCCchhhHHHHhcCC-E---ecCHH----HHHhCCCEEEECCCCHHHHHHH
Confidence 56778776553 4556666778887776322111111111111 1 12332 23568999999887666665 3
Q ss_pred HHHHHHHHHhCCCCccEEEEecCcc
Q 028644 127 LLEVITWAQLGIHDKPVGLINVDGY 151 (206)
Q Consensus 127 l~~~~~~~~~g~~~kPiill~~~g~ 151 (206)
.+..+ ++-.++.|.+.+
T Consensus 285 ~~~~m--------K~GailiNvG~~ 301 (425)
T PRK05476 285 HMEAM--------KDGAILANIGHF 301 (425)
T ss_pred HHhcC--------CCCCEEEEcCCC
Confidence 43332 344566776433
No 248
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=31.09 E-value=1.3e+02 Score=24.46 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=26.7
Q ss_pred hCCeeEEecCCcCcHHHHHHHHH-------HHHhCCCCccEEEEe
Q 028644 110 NSDCFIALPGGYGTLEELLEVIT-------WAQLGIHDKPVGLIN 147 (206)
Q Consensus 110 ~sDa~IvlpGG~GTL~El~~~~~-------~~~~g~~~kPiill~ 147 (206)
.+|++|+.|-...|+.-+..-++ ..+....++|++++-
T Consensus 78 ~~D~~vVaPaTaNtlakiA~GiaD~l~t~~~~~~lk~~~pvvi~P 122 (174)
T TIGR02699 78 KYDFLLIAPATANTVAKIAYGIADTLVTNAVIQAAKAKVPVYIMP 122 (174)
T ss_pred ccCEEEEEeCCHHHHHHHHccccCcHHHHHHHHHhccCCCEEEEE
Confidence 47999999999999988764332 122224578998863
No 249
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=30.98 E-value=3.4e+02 Score=23.86 Aligned_cols=17 Identities=6% Similarity=0.022 Sum_probs=14.4
Q ss_pred EEEcCCHHHHHHHhHhc
Q 028644 176 LVSAPNAKELVQKLEVG 192 (206)
Q Consensus 176 i~~~~~~ee~~~~l~~~ 192 (206)
++.++|++|+++.|++.
T Consensus 269 vi~v~~~~el~d~l~~~ 285 (286)
T TIGR01019 269 VTVVKSPSDIGELLAEI 285 (286)
T ss_pred CeEeCCHHHHHHHHHHh
Confidence 67789999999998763
No 250
>PLN02494 adenosylhomocysteinase
Probab=30.96 E-value=1.9e+02 Score=27.50 Aligned_cols=91 Identities=13% Similarity=0.249 Sum_probs=48.4
Q ss_pred CeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceeeccCCHHHHHHHHHhhCCeeEEecCCcCcH-H
Q 028644 47 LDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTL-E 125 (206)
Q Consensus 47 ~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL-~ 125 (206)
-.+|.|.|+.|. .+++-+...|.+|+.+-.+.....+.....+. +.++. -.+..+|.||..+|..+.+ .
T Consensus 256 tVvViGyG~IGr--~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~----vv~le----Eal~~ADVVI~tTGt~~vI~~ 325 (477)
T PLN02494 256 VAVICGYGDVGK--GCAAAMKAAGARVIVTEIDPICALQALMEGYQ----VLTLE----DVVSEADIFVTTTGNKDIIMV 325 (477)
T ss_pred EEEEECCCHHHH--HHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe----eccHH----HHHhhCCEEEECCCCccchHH
Confidence 455778887664 45555666777887773322110111111111 11332 2467899999988887765 4
Q ss_pred HHHHHHHHHHhCCCCccEEEEecCccchhHH
Q 028644 126 ELLEVITWAQLGIHDKPVGLINVDGYYNSLL 156 (206)
Q Consensus 126 El~~~~~~~~~g~~~kPiill~~~g~w~~l~ 156 (206)
+.+..+ ++=.++.|.+ .+++.+
T Consensus 326 e~L~~M--------K~GAiLiNvG-r~~~eI 347 (477)
T PLN02494 326 DHMRKM--------KNNAIVCNIG-HFDNEI 347 (477)
T ss_pred HHHhcC--------CCCCEEEEcC-CCCCcc
Confidence 444333 2224566764 555433
No 251
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=30.90 E-value=1.4e+02 Score=22.48 Aligned_cols=39 Identities=28% Similarity=0.461 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHH----CCCe-EEE--cCC-ccChhHHHHHHHHhcCC
Q 028644 33 DAALDLGQELVS----KKLD-LVY--GGG-SVGLMGLVSHVVHRGGG 71 (206)
Q Consensus 33 ~~A~~lG~~lA~----~g~~-lv~--GGg-~~GlM~a~~~ga~~~gG 71 (206)
+.|+.+|+.||+ .|+. +++ ||. ..|-+.+++++|.++|-
T Consensus 61 ~aA~~vG~lla~ra~~~gi~~vvfDrgg~~yhGrV~a~a~~are~GL 107 (109)
T CHL00139 61 DASKLVGQKLAKKSLKKGITKVVFDRGGKLYHGRIKALAEAAREAGL 107 (109)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEcCCCCccchHHHHHHHHHHHhCC
Confidence 578889988886 4653 232 331 25899999999999873
No 252
>PLN02591 tryptophan synthase
Probab=30.87 E-value=2.7e+02 Score=23.94 Aligned_cols=40 Identities=25% Similarity=0.523 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHhCCCCccEEEEecCccchhHHH-----HHHHHHHcC
Q 028644 123 TLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLN-----FIDKAVDDG 166 (206)
Q Consensus 123 TL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~-----~l~~~~~~g 166 (206)
|++.+++.+.-.+ ...+.|++++. ||+++.. |++.+.+.|
T Consensus 62 ~~~~~~~~~~~~r-~~~~~p~ilm~---Y~N~i~~~G~~~F~~~~~~aG 106 (250)
T PLN02591 62 TLDSVISMLKEVA-PQLSCPIVLFT---YYNPILKRGIDKFMATIKEAG 106 (250)
T ss_pred CHHHHHHHHHHHh-cCCCCCEEEEe---cccHHHHhHHHHHHHHHHHcC
Confidence 6677777775544 23567998874 8886554 566666655
No 253
>PLN02522 ATP citrate (pro-S)-lyase
Probab=30.87 E-value=5.3e+02 Score=25.38 Aligned_cols=88 Identities=15% Similarity=0.072 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHhh--CCeeEEecC-CcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhH---HHHHHHHHHcCCCCcc
Q 028644 98 ADMHQRKAEMARN--SDCFIALPG-GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSL---LNFIDKAVDDGFISPS 171 (206)
Q Consensus 98 ~~~~~Rk~~m~~~--sDa~IvlpG-G~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l---~~~l~~~~~~gfi~~~ 171 (206)
.++.+=-..+.+. .++++++.- |..--.++.+++. -...+|||+.+-. |-+.+. ... +--.|-+-..
T Consensus 208 ~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~~f~ea~~---~a~~~KPVVa~ka-Grsa~~~~~~aa---~gHtGAiag~ 280 (608)
T PLN02522 208 STLSDHVLRFNNIPQIKMIVVLGELGGRDEYSLVEALK---QGKVSKPVVAWVS-GTCARLFKSEVQ---FGHAGAKSGG 280 (608)
T ss_pred CCHHHHHHHHhcCCCCCEEEEEEecCchhHHHHHHHHH---HhcCCCCEEEEec-cCCCccCccccc---cccccccccC
Confidence 3455545555443 335555544 4444445555442 2125799999854 344421 110 1011111111
Q ss_pred c------------cCcEEEcCCHHHHHHHhHhc
Q 028644 172 Q------------RSILVSAPNAKELVQKLEVG 192 (206)
Q Consensus 172 ~------------~~~i~~~~~~ee~~~~l~~~ 192 (206)
+ ..-+++++|++|+.+.+++.
T Consensus 281 ~~~ta~~k~aAlr~aGv~vv~s~~El~~~~~~~ 313 (608)
T PLN02522 281 DMESAQAKNKALKDAGAIVPTSFEALEAAIKET 313 (608)
T ss_pred CCccHHHHHHHHHHCCCeEeCCHHHHHHHHHHH
Confidence 1 12378899999999988764
No 254
>PRK06756 flavodoxin; Provisional
Probab=30.81 E-value=1.5e+02 Score=22.61 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=5.9
Q ss_pred HHHHHhcCCeEEE
Q 028644 63 SHVVHRGGGHVLG 75 (206)
Q Consensus 63 ~~ga~~~gG~viG 75 (206)
.+-..+.|..+++
T Consensus 107 ~~~l~~~g~~~v~ 119 (148)
T PRK06756 107 IEKLQERGAAVVL 119 (148)
T ss_pred HHHHHHCCCEEcC
Confidence 3333345555544
No 255
>PRK05568 flavodoxin; Provisional
Probab=30.64 E-value=84 Score=23.66 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=14.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKL 47 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~ 47 (206)
++|.|+..|..++.. +.|+.+.+.+.+.|+
T Consensus 2 ~~~~IvY~S~~GnT~---~~a~~i~~~~~~~g~ 31 (142)
T PRK05568 2 KKINIIYWSGTGNTE---AMANLIAEGAKENGA 31 (142)
T ss_pred CeEEEEEECCCchHH---HHHHHHHHHHHHCCC
Confidence 345555556555433 344555555544444
No 256
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=30.62 E-value=90 Score=27.13 Aligned_cols=40 Identities=28% Similarity=0.600 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHH-HHHHHHc
Q 028644 123 TLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNF-IDKAVDD 165 (206)
Q Consensus 123 TL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~-l~~~~~~ 165 (206)
|++.+++.+.-.+-...+.|++++. ||+++... +++..++
T Consensus 70 ~~~~~~~~~~~ir~~~~~~pivlm~---Y~N~i~~~G~e~F~~~ 110 (259)
T PF00290_consen 70 TLEKIFELVKEIRKKEPDIPIVLMT---YYNPIFQYGIERFFKE 110 (259)
T ss_dssp -HHHHHHHHHHHHHHCTSSEEEEEE----HHHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCCEEEEe---eccHHhccchHHHHHH
No 257
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=30.49 E-value=87 Score=27.53 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=22.8
Q ss_pred CCeeEEecCCcCcHHHHHHHHHHHHhCCCCcc-EEEE
Q 028644 111 SDCFIALPGGYGTLEELLEVITWAQLGIHDKP-VGLI 146 (206)
Q Consensus 111 sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kP-iill 146 (206)
..-.|+..||=||++|+...+. .++.| +.++
T Consensus 58 ~~D~via~GGDGTv~evingl~-----~~~~~~Lgil 89 (301)
T COG1597 58 GYDTVIAAGGDGTVNEVANGLA-----GTDDPPLGIL 89 (301)
T ss_pred CCCEEEEecCcchHHHHHHHHh-----cCCCCceEEe
Confidence 4446677899999999998884 35556 6665
No 258
>PRK15494 era GTPase Era; Provisional
Probab=30.48 E-value=3.4e+02 Score=24.11 Aligned_cols=86 Identities=13% Similarity=0.152 Sum_probs=40.6
Q ss_pred HhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCC-ccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEE----cCCH
Q 028644 108 ARNSDCFIALPGGYGTLEELLEVITWAQLGIHD-KPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS----APNA 182 (206)
Q Consensus 108 ~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~-kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~----~~~~ 182 (206)
+..+|++|++--..-++++.-..+ +..+...+ .|++++|.-...+.....+.....+.+. ....+.+ -.+.
T Consensus 129 l~~aDvil~VvD~~~s~~~~~~~i-l~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~---~~~i~~iSAktg~gv 204 (339)
T PRK15494 129 LHSADLVLLIIDSLKSFDDITHNI-LDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTENHP---DSLLFPISALSGKNI 204 (339)
T ss_pred hhhCCEEEEEEECCCCCCHHHHHH-HHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhcCC---CcEEEEEeccCccCH
Confidence 568998777654433444432211 22222223 4555566533322212222222222111 0112222 3578
Q ss_pred HHHHHHhHhccCCcc
Q 028644 183 KELVQKLEVGFLFVS 197 (206)
Q Consensus 183 ee~~~~l~~~~~~~~ 197 (206)
+++++.|.++.++..
T Consensus 205 ~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 205 DGLLEYITSKAKISP 219 (339)
T ss_pred HHHHHHHHHhCCCCC
Confidence 999999988776544
No 259
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=30.31 E-value=2.9e+02 Score=22.29 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCcccc---cccCCCCCceeec----cCCHHHHHH
Q 028644 33 DAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMN---KEITGETVGEVKP----VADMHQRKA 105 (206)
Q Consensus 33 ~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~---~e~~~~~~~~~~~----~~~~~~Rk~ 105 (206)
+....+.+.+......+++.|-| ++-+....-+...+..-+=|+|..... .....-++.+... ..+...+..
T Consensus 55 ~~~~~i~~~~~g~~vv~l~~GDP-~~~~~~~~l~~~~~~~~v~iiPGiSs~~~a~a~~g~~l~~~~~is~~~~~~~~~~~ 133 (204)
T TIGR02467 55 ELLEFIAATRKEKRVVVLASGDP-LFYGIGRTLAERLGKERLEIIPGISSVQYAFARLGLPWQDAVVISLHGRELDELLL 133 (204)
T ss_pred HHHHHHHHhcCCCCEEEEecCCC-cccccHHHHHHhCCCCcEEEeCChHHHHHHHHHcCCChhhCeEEEeeCCCCcHHHH
Confidence 33344433332234556777766 888776665555554446677865210 0001111122111 111222223
Q ss_pred HHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCc-cEEEEe
Q 028644 106 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDK-PVGLIN 147 (206)
Q Consensus 106 ~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~k-Piill~ 147 (206)
..+...+.++++.++..++.++.+.+. ..|..+. |+.+..
T Consensus 134 ~~l~~~~~~vvl~~~~~~~~~i~~~L~--~~g~~~~~~v~v~~ 174 (204)
T TIGR02467 134 ALLRGHRKVAVLTDPRNGPAEIARELI--ELGIGGSYELTVGE 174 (204)
T ss_pred HHHhcCCcEEEEeCCCCCHHHHHHHHH--HCCCCCCeEEEEEc
Confidence 345667888888888889999998764 3344343 777753
No 260
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.25 E-value=3e+02 Score=26.52 Aligned_cols=65 Identities=18% Similarity=0.125 Sum_probs=42.3
Q ss_pred HHccCCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE------------------------------EEcCCccC
Q 028644 8 AKAMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL------------------------------VYGGGSVG 57 (206)
Q Consensus 8 ~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~l------------------------------v~GGg~~G 57 (206)
+....++++|+|+. +.. ++...+.+.++.++|.++|+.+ |+=||. |
T Consensus 284 ~~w~~~~~~i~iv~--~~~-~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGD-G 359 (569)
T PRK14076 284 NKWRIKPTKFGIVS--RID-NEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGD-G 359 (569)
T ss_pred hhcccCCcEEEEEc--CCC-CHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCc-H
Confidence 45567778999994 332 4556678888888887666422 333455 7
Q ss_pred hhHHHHHHHHhcCCeEEEE
Q 028644 58 LMGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 58 lM~a~~~ga~~~gG~viGv 76 (206)
-|=-+++-....+-.++||
T Consensus 360 T~L~aa~~~~~~~~PilGi 378 (569)
T PRK14076 360 TVLRASKLVNGEEIPIICI 378 (569)
T ss_pred HHHHHHHHhcCCCCCEEEE
Confidence 6666666555556677887
No 261
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=30.15 E-value=2.7e+02 Score=25.94 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHH-----CCCeEEEcCCccC---hhHHHHHHHHhcCC--eEEEEeCCcccccccCCCCCceeeccCCHHH
Q 028644 33 DAALDLGQELVS-----KKLDLVYGGGSVG---LMGLVSHVVHRGGG--HVLGIIPKTLMNKEITGETVGEVKPVADMHQ 102 (206)
Q Consensus 33 ~~A~~lG~~lA~-----~g~~lv~GGg~~G---lM~a~~~ga~~~gG--~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~ 102 (206)
+.|..++..+|+ .+...+|||-..| ||.|+...+.+.+- +++.+....+. +.+..-+.-..|.+
T Consensus 96 ~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~------~~~v~a~~~~~~~~ 169 (408)
T COG0593 96 RLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT------NDFVKALRDNEMEK 169 (408)
T ss_pred HHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH------HHHHHHHHhhhHHH
Confidence 566777888887 4567788875444 89999999999876 55555322110 00000111233432
Q ss_pred HHHHHHhhCCeeEE-----ecCCcCcHHHHHHHHHHHHhCCCCccEEE
Q 028644 103 RKAEMARNSDCFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVGL 145 (206)
Q Consensus 103 Rk~~m~~~sDa~Iv-----lpGG~GTL~El~~~~~~~~~g~~~kPiil 145 (206)
=|... +.|.+++ +.|.-.|.+|+|...... ...+|-|++
T Consensus 170 Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l--~~~~kqIvl 213 (408)
T COG0593 170 FKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNAL--LENGKQIVL 213 (408)
T ss_pred HHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHH--HhcCCEEEE
Confidence 22222 7777765 678889999999877433 234554444
No 262
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=30.13 E-value=1.5e+02 Score=26.64 Aligned_cols=42 Identities=33% Similarity=0.324 Sum_probs=28.0
Q ss_pred hhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccch
Q 028644 109 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYN 153 (206)
Q Consensus 109 ~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~ 153 (206)
..=|.+|++||+.||..-+..-++ +++ ++.+||=.+..+-=+
T Consensus 179 ~~fD~vVva~gs~gT~AGl~~g~~--~~~-~~~~ViG~~v~~~~~ 220 (323)
T COG2515 179 LKFDSVVVAPGSGGTHAGLLVGLA--QLG-PDVEVIGIDVSADPE 220 (323)
T ss_pred cCCCEEEEeCCCcchHHHHHHHhh--hcc-CCCceEEEeecCCHH
Confidence 455899999999999987765543 332 356776666544333
No 263
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=30.10 E-value=1.1e+02 Score=25.63 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=52.3
Q ss_pred hCCeeEEecCCcCcHHHHHHHHHHHHhC-------CCCccEEEEecCccch--hHHHHHHHHHHcC-CCCccccCcEEEc
Q 028644 110 NSDCFIALPGGYGTLEELLEVITWAQLG-------IHDKPVGLINVDGYYN--SLLNFIDKAVDDG-FISPSQRSILVSA 179 (206)
Q Consensus 110 ~sDa~IvlpGG~GTL~El~~~~~~~~~g-------~~~kPiill~~~g~w~--~l~~~l~~~~~~g-fi~~~~~~~i~~~ 179 (206)
..|+.|+.|=...||..+..-++-.-+. +.++|.+|+--+-=+. .|.++++ +.+.| .|-+.....++--
T Consensus 80 ~~~gMiI~PCSmkTla~IA~G~~dnLi~RAAdV~LKErR~LVLv~REtPl~~ihLeNMlk-l~~~GaiI~Pp~PaFY~~P 158 (191)
T COG0163 80 RTDGMIIAPCSMKTLAAIAHGFADNLITRAADVALKERRPLVLVPRETPLSLIHLENMLK-LAEMGAIIMPPMPAFYHKP 158 (191)
T ss_pred CcCcEEEEeCcHHHHHHHHhcccccHHHHHHHHHHhhCCceEEEeccCCccHHHHHHHHH-HHHCCCEecCCChhhhcCC
Confidence 3578999999999999998665443332 3578998875443232 2334333 33334 4445555666667
Q ss_pred CCHHHHHHHhHh
Q 028644 180 PNAKELVQKLEV 191 (206)
Q Consensus 180 ~~~ee~~~~l~~ 191 (206)
.|.||+++++..
T Consensus 159 ~sieDlvd~~v~ 170 (191)
T COG0163 159 QSIEDLVDFVVG 170 (191)
T ss_pred CCHHHHHHHHHH
Confidence 899999988754
No 264
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=30.09 E-value=66 Score=22.88 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=16.0
Q ss_pred EEEcCCHHHHHHHhHhcc
Q 028644 176 LVSAPNAKELVQKLEVGF 193 (206)
Q Consensus 176 i~~~~~~ee~~~~l~~~~ 193 (206)
++.++|+||+++.|.++.
T Consensus 55 ~V~A~t~eeL~~kI~~~i 72 (78)
T PF07293_consen 55 IVAAETAEELLEKIKEKI 72 (78)
T ss_pred EEecCCHHHHHHHHHHHH
Confidence 688999999999998765
No 265
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=29.96 E-value=1.6e+02 Score=25.32 Aligned_cols=55 Identities=16% Similarity=0.194 Sum_probs=26.1
Q ss_pred hCCeeEEecCCc----CcHHHHH-----HHHHHHHhCCCCccEEEEecC---ccchhHHHHHHHHHHcC
Q 028644 110 NSDCFIALPGGY----GTLEELL-----EVITWAQLGIHDKPVGLINVD---GYYNSLLNFIDKAVDDG 166 (206)
Q Consensus 110 ~sDa~IvlpGG~----GTL~El~-----~~~~~~~~g~~~kPiill~~~---g~w~~l~~~l~~~~~~g 166 (206)
..|++|||++|. |+++..+ .++.+.+-+ +.+.+++.++ ..++.-..+-+.+++.|
T Consensus 44 ~~d~ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LYk~g--k~~~ilvSGg~~~~~~~Ea~~M~~yLi~~G 110 (239)
T PRK10834 44 YRQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSG--KVNYLLLSGDNALQSYNEPMTMRKDLIAAG 110 (239)
T ss_pred CCCEEEEcCCcccCCCCCcCHHHHHHHHHHHHHHHhC--CCCEEEEeCCCCCCCCCHHHHHHHHHHHcC
Confidence 467777777653 5555443 333332222 2344444332 23444444334566666
No 266
>PRK00861 putative lipid kinase; Reviewed
Probab=29.83 E-value=1.2e+02 Score=26.29 Aligned_cols=30 Identities=33% Similarity=0.607 Sum_probs=22.0
Q ss_pred CCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEE
Q 028644 111 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLI 146 (206)
Q Consensus 111 sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill 146 (206)
.| .|+.-||=||++|+...+. ..+.|+.++
T Consensus 58 ~d-~vv~~GGDGTl~evv~~l~-----~~~~~lgvi 87 (300)
T PRK00861 58 AE-LIIASGGDGTLSAVAGALI-----GTDIPLGII 87 (300)
T ss_pred CC-EEEEECChHHHHHHHHHHh-----cCCCcEEEE
Confidence 35 4567899999999998773 134677776
No 267
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=29.82 E-value=4.1e+02 Score=23.81 Aligned_cols=84 Identities=13% Similarity=0.034 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHh--hCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchh----------HH--------H
Q 028644 98 ADMHQRKAEMAR--NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNS----------LL--------N 157 (206)
Q Consensus 98 ~~~~~Rk~~m~~--~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~----------l~--------~ 157 (206)
.++.+=-+.+.+ ..+++++..-+.|+.+|-...|- .....+|||+.+-. |-+.+ +. .
T Consensus 210 ~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi--~~~~~~KPVVa~~a-Grsap~G~r~gHaGAi~~~~~G~~~~ 286 (317)
T PTZ00187 210 TNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWI--KNNPIKKPVVSFIA-GITAPPGRRMGHAGAIISGGKGTAPG 286 (317)
T ss_pred CCHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHH--HhhcCCCcEEEEEe-cCCCCCCCcccchhhhhccCCCCHHH
Confidence 455555566654 45677777777788865544332 22235799999854 45543 11 1
Q ss_pred HHHHHHHcCCCCccccCcEEEcCCHHHHHHHhHhcc
Q 028644 158 FIDKAVDDGFISPSQRSILVSAPNAKELVQKLEVGF 193 (206)
Q Consensus 158 ~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~~~~ 193 (206)
+...+.+. -+.+++|++|+.+.+++.+
T Consensus 287 k~aal~qa---------Gv~v~~~~~el~~~~~~~~ 313 (317)
T PTZ00187 287 KIEALEAA---------GVRVVKSPAQLGKTMLEVM 313 (317)
T ss_pred HHHHHHHC---------CCeEeCCHHHHHHHHHHHH
Confidence 11122222 3788999999999987653
No 268
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=29.78 E-value=55 Score=26.10 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=22.4
Q ss_pred CCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 028644 12 SRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (206)
Q Consensus 12 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (206)
++.++|.|+||+... - -.+..++|.|+++|+.+.
T Consensus 23 ~~~~~v~il~G~GnN----G-gDgl~~AR~L~~~G~~V~ 56 (169)
T PF03853_consen 23 PKGPRVLILCGPGNN----G-GDGLVAARHLANRGYNVT 56 (169)
T ss_dssp CTT-EEEEEE-SSHH----H-HHHHHHHHHHHHTTCEEE
T ss_pred cCCCeEEEEECCCCC----h-HHHHHHHHHHHHCCCeEE
Confidence 666889999987631 1 234568888899998764
No 269
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=29.67 E-value=53 Score=30.28 Aligned_cols=40 Identities=23% Similarity=0.500 Sum_probs=32.3
Q ss_pred chh-HHHHHHHHHHcCCCCccccC---cEEEcCCHHHHHHHhHh
Q 028644 152 YNS-LLNFIDKAVDDGFISPSQRS---ILVSAPNAKELVQKLEV 191 (206)
Q Consensus 152 w~~-l~~~l~~~~~~gfi~~~~~~---~i~~~~~~ee~~~~l~~ 191 (206)
|+. +..-++.|+.+|.|+++..+ .-.+..+++|+-+.+++
T Consensus 255 ~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~ 298 (386)
T PLN02668 255 FGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEA 298 (386)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhh
Confidence 544 55567889999999998765 56889999999999875
No 270
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.55 E-value=2.7e+02 Score=24.20 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=16.8
Q ss_pred CCeEEEcCCccChhHHHHHHHHhcCCeEEEE
Q 028644 46 KLDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 46 g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 76 (206)
.+.++ -||. |.|-.+++ ....+-.++||
T Consensus 59 d~vi~-iGGD-GTlL~a~~-~~~~~~pi~gI 86 (277)
T PRK03708 59 DFIIA-IGGD-GTILRIEH-KTKKDIPILGI 86 (277)
T ss_pred CEEEE-EeCc-HHHHHHHH-hcCCCCeEEEE
Confidence 34444 4555 88777777 55555566666
No 271
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.51 E-value=1.3e+02 Score=26.50 Aligned_cols=106 Identities=24% Similarity=0.304 Sum_probs=60.4
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCcccccccCCCCCce
Q 028644 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGE 93 (206)
Q Consensus 14 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~ 93 (206)
+++|+|+. +.. +...+.+.++.++|.++|+.++.--.. +... +. +. .
T Consensus 10 ~~~i~ii~--~~~--~~~~~~~~~i~~~l~~~g~~~~~~~~~----------~~~~-----~~-~~-----------~-- 56 (287)
T PRK14077 10 IKKIGLVT--RPN--VSLDKEILKLQKILSIYKVEILLEKES----------AEIL-----DL-PG-----------Y-- 56 (287)
T ss_pred CCEEEEEe--CCc--HHHHHHHHHHHHHHHHCCCEEEEecch----------hhhh-----cc-cc-----------c--
Confidence 56799994 333 255678899999999999888754321 0000 00 00 0
Q ss_pred eeccCCHHHHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecC--ccc-----hhHHHHHHHHHHcC
Q 028644 94 VKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD--GYY-----NSLLNFIDKAVDDG 166 (206)
Q Consensus 94 ~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~--g~w-----~~l~~~l~~~~~~g 166 (206)
.. . -+...+|.+|++ ||=||+--.+..+ ...++||+=.|.+ ||. +.+.+.++++.+..
T Consensus 57 -----~~---~-~~~~~~Dlvi~i-GGDGT~L~aa~~~-----~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 57 -----GL---D-ELFKISDFLISL-GGDGTLISLCRKA-----AEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFFQGE 121 (287)
T ss_pred -----ch---h-hcccCCCEEEEE-CCCHHHHHHHHHh-----cCCCCcEEEEeCCCcccCCcCCHHHHHHHHHHHHcCC
Confidence 00 0 011246765554 7899975444333 2457898878764 565 45566666665444
Q ss_pred C
Q 028644 167 F 167 (206)
Q Consensus 167 f 167 (206)
|
T Consensus 122 y 122 (287)
T PRK14077 122 F 122 (287)
T ss_pred C
Confidence 3
No 272
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=29.49 E-value=1.7e+02 Score=23.78 Aligned_cols=66 Identities=20% Similarity=0.320 Sum_probs=37.8
Q ss_pred HHhhCCeeEEec--CCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCCHHH
Q 028644 107 MARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKE 184 (206)
Q Consensus 107 m~~~sDa~Ivlp--GG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee 184 (206)
++..||++|.-. .|+|+- +.|++ ..++|++..+..+ ...+ + .+.....+.-.+|+++
T Consensus 260 ~~~~~d~~i~ps~~e~~~~~--~~Ea~------~~G~PvI~~~~~~-~~e~-------i-----~~~~~g~~~~~~~~~~ 318 (353)
T cd03811 260 YLKAADLFVLSSRYEGFPNV--LLEAM------ALGTPVVATDCPG-PREI-------L-----EDGENGLLVPVGDEAA 318 (353)
T ss_pred HHHhCCEEEeCcccCCCCcH--HHHHH------HhCCCEEEcCCCC-hHHH-------h-----cCCCceEEECCCCHHH
Confidence 567899887643 344443 66667 3789999877653 2222 1 1222334455567777
Q ss_pred H---HHHhHhcc
Q 028644 185 L---VQKLEVGF 193 (206)
Q Consensus 185 ~---~~~l~~~~ 193 (206)
+ ++.+.+..
T Consensus 319 ~~~~~~~i~~~~ 330 (353)
T cd03811 319 LAAAALALLDLL 330 (353)
T ss_pred HHHHHHHHHhcc
Confidence 6 55555544
No 273
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.39 E-value=2.2e+02 Score=24.46 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=33.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe----------------EEEcCCccChhHHHHHHHHhcCCeEEEEe
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLD----------------LVYGGGSVGLMGLVSHVVHRGGGHVLGII 77 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~----------------lv~GGg~~GlM~a~~~ga~~~gG~viGv~ 77 (206)
|+++|+ .++ .-.+.+.++-.+|.+.|+. +++=||. |.|=.+++.. +-.++||-
T Consensus 1 m~~~~~--~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iGGD-GT~L~a~~~~---~~Pilgin 69 (256)
T PRK14075 1 MKLGIF--YRE----EKEKEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVGGD-GTVLKAAKKV---GTPLVGFK 69 (256)
T ss_pred CEEEEE--eCc----cHHHHHHHHHHHHHHcCCeeEeecccccccCCCCEEEEECCc-HHHHHHHHHc---CCCEEEEe
Confidence 467777 222 2336677888888877642 4445556 7776666654 66778873
No 274
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=29.39 E-value=1.2e+02 Score=23.04 Aligned_cols=47 Identities=23% Similarity=0.324 Sum_probs=25.9
Q ss_pred HHHHHHhhCCeeEEe-cCCc----CcHHHHHHHHHHHHhC-CCCccEEEEecC
Q 028644 103 RKAEMARNSDCFIAL-PGGY----GTLEELLEVITWAQLG-IHDKPVGLINVD 149 (206)
Q Consensus 103 Rk~~m~~~sDa~Ivl-pGG~----GTL~El~~~~~~~~~g-~~~kPiill~~~ 149 (206)
+-.--+..||++|+. |==. |.+--+++-+...... ..+||++++.+.
T Consensus 63 ~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 63 ELYDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVG 115 (152)
T ss_dssp HHHHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEE
T ss_pred HHHhceecCCeEEEeecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEEe
Confidence 334455789987665 5333 4444444444321122 468999988554
No 275
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=29.32 E-value=1.2e+02 Score=22.69 Aligned_cols=32 Identities=19% Similarity=0.394 Sum_probs=23.9
Q ss_pred eEEEcCCccChhHHHHHHHHhcCC----eEEEEeCCc
Q 028644 48 DLVYGGGSVGLMGLVSHVVHRGGG----HVLGIIPKT 80 (206)
Q Consensus 48 ~lv~GGg~~GlM~a~~~ga~~~gG----~viGv~P~~ 80 (206)
.||..||. |....+..+...... ..+|++|..
T Consensus 52 ~vvv~GGD-GTi~~vvn~l~~~~~~~~~~plgiiP~G 87 (124)
T smart00046 52 RVLVCGGD-GTVGWVLNALDKRELPLPEPPVAVLPLG 87 (124)
T ss_pred EEEEEccc-cHHHHHHHHHHhcccccCCCcEEEeCCC
Confidence 56667776 988888888876654 469999854
No 276
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=29.23 E-value=2.3e+02 Score=23.44 Aligned_cols=67 Identities=16% Similarity=0.113 Sum_probs=39.5
Q ss_pred HHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhC-CCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcC
Q 028644 102 QRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 180 (206)
Q Consensus 102 ~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g-~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 180 (206)
++....++.+|.+|+++ -.++. .-++.+...- ..+.|++++|.+.-. ++ ...-+.+..
T Consensus 156 ~~~~~~~~~~dl~lvlG-Tsl~v---~p~~~l~~~~~~~~~~~i~iN~~~~~---------------~~--~~~~~~i~g 214 (224)
T cd01412 156 LEAVEALAKADLFLVIG-TSGVV---YPAAGLPEEAKERGARVIEINPEPTP---------------LS--PIADFAFRG 214 (224)
T ss_pred HHHHHHHHcCCEEEEEC-cCccc---hhHHHHHHHHHHCCCeEEEECCCCCC---------------CC--CcCCEEEEC
Confidence 34455567899999875 33333 3333333322 357899999975211 11 122366778
Q ss_pred CHHHHHHHh
Q 028644 181 NAKELVQKL 189 (206)
Q Consensus 181 ~~ee~~~~l 189 (206)
+.+|++..|
T Consensus 215 ~~~~~l~~l 223 (224)
T cd01412 215 KAGEVLPAL 223 (224)
T ss_pred CHHHHHHHh
Confidence 899988865
No 277
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=29.03 E-value=3.4e+02 Score=24.31 Aligned_cols=23 Identities=39% Similarity=0.349 Sum_probs=19.1
Q ss_pred CeeEEecCCcCcHHHHHHHHHHH
Q 028644 112 DCFIALPGGYGTLEELLEVITWA 134 (206)
Q Consensus 112 Da~IvlpGG~GTL~El~~~~~~~ 134 (206)
-..|.+|--.|.|.++.+.+...
T Consensus 307 ~l~v~l~D~pG~L~~v~~~i~~~ 329 (380)
T TIGR01127 307 RIETVLPDRPGALYHLLESIAEA 329 (380)
T ss_pred EEEEEeCCCCCHHHHHHHHHhcC
Confidence 46788899999999999988643
No 278
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=28.66 E-value=2.2e+02 Score=26.77 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=30.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EcCCccChhHHHHHHHHhcCCeEEEEeCCcccccc
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV-YGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKE 85 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv-~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e 85 (206)
++|||+|| . |.... .+..|++.||.|+ ++--+ +.||...-=||++.++.+
T Consensus 124 ~~VaviGa-G----PAGl~----~a~~L~~~G~~Vtv~e~~~------------~~GGll~yGIP~~kl~k~ 174 (457)
T COG0493 124 KKVAVIGA-G----PAGLA----AADDLSRAGHDVTVFERVA------------LDGGLLLYGIPDFKLPKD 174 (457)
T ss_pred CEEEEECC-C----chHhh----hHHHHHhCCCeEEEeCCcC------------CCceeEEecCchhhccch
Confidence 78999964 3 45543 3556788898774 44332 456654333688776644
No 279
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=28.51 E-value=1.9e+02 Score=25.06 Aligned_cols=60 Identities=18% Similarity=0.290 Sum_probs=42.7
Q ss_pred CCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHC-CCeEEEcCCccChhHHHHHHHHhcCCeEEE
Q 028644 12 SRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSK-KLDLVYGGGSVGLMGLVSHVVHRGGGHVLG 75 (206)
Q Consensus 12 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~-g~~lv~GGg~~GlM~a~~~ga~~~gG~viG 75 (206)
.+..-|+|| .... .-.|.+.|-.+..-+|.+ |+.+..|-- .|-+.-+-+.|.++||..+-
T Consensus 77 G~R~Gi~II-dLdq--T~~~Lr~A~~fVa~vA~r~GiILFv~tn-~~~~~~ve~aA~r~~gy~~~ 137 (251)
T KOG0832|consen 77 GKRLGIHII-DLDQ--TASYLRRALNFVAHVAHRGGIILFVGTN-NGFKDLVERAARRAGGYSHN 137 (251)
T ss_pred ccccCcEEE-ecHH--HHHHHHHHHHHHHHHHhcCCeEEEEecC-cchHHHHHHHHHHhcCceee
Confidence 334445555 2111 357888999999999986 555555555 49999999999999987653
No 280
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=28.33 E-value=4.3e+02 Score=23.51 Aligned_cols=49 Identities=16% Similarity=0.334 Sum_probs=31.4
Q ss_pred HHHHHHHhhCCeeEEecCC---cCcHHHHHHHHHHHHhCCCCccEEEEecCccch
Q 028644 102 QRKAEMARNSDCFIALPGG---YGTLEELLEVITWAQLGIHDKPVGLINVDGYYN 153 (206)
Q Consensus 102 ~Rk~~m~~~sDa~IvlpGG---~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~ 153 (206)
++-..++..=+|+|+=||= -+++-++..++.... ..++|+++ +.||.|=
T Consensus 93 ~~i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~--~~dvP~VI-DaDGL~L 144 (306)
T KOG3974|consen 93 DIIEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLR--GKDVPLVI-DADGLWL 144 (306)
T ss_pred hHHHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHh--cCCCcEEE-cCCceEe
Confidence 3444477788888887762 355666666654433 34689875 7788883
No 281
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=28.32 E-value=1.4e+02 Score=25.32 Aligned_cols=46 Identities=20% Similarity=0.419 Sum_probs=28.4
Q ss_pred HHHHHHHhhCCeeEEec----CC-cCcHHHHHHHHHHHHhC------CCCccEEEEecCc
Q 028644 102 QRKAEMARNSDCFIALP----GG-YGTLEELLEVITWAQLG------IHDKPVGLINVDG 150 (206)
Q Consensus 102 ~Rk~~m~~~sDa~Ivlp----GG-~GTL~El~~~~~~~~~g------~~~kPiill~~~g 150 (206)
.+-+..++.+|+||+.. |+ .|+|=-. +.|..-. ..+||+.++...|
T Consensus 82 ~~l~~~v~~ADgvii~TPEYn~sipg~LKNa---iDwls~~~~~~~~~~~KpvaivgaSg 138 (219)
T TIGR02690 82 RELRQLSEWSEGQVWCSPERHGAITGSQKDQ---IDWIPLSVGPVRPTQGKTLAVMQVSG 138 (219)
T ss_pred HHHHHHHHhCCEEEEeCCccccCcCHHHHHH---HHhcccCcccccccCCCcEEEEEeCC
Confidence 34456778999988773 23 3554433 4444332 4679999987654
No 282
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=28.00 E-value=59 Score=30.24 Aligned_cols=41 Identities=24% Similarity=0.360 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCc----------cChhHHHHHHHHhcCCeE
Q 028644 33 DAALDLGQELVSKKLDLVYGGGS----------VGLMGLVSHVVHRGGGHV 73 (206)
Q Consensus 33 ~~A~~lG~~lA~~g~~lv~GGg~----------~GlM~a~~~ga~~~gG~v 73 (206)
+.|+.|+..|.++|+.||+||-. .|+-+..++.+++.-|.+
T Consensus 291 ~NAkaLAe~l~~~G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It 341 (413)
T COG0112 291 KNAKALAEALKERGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGIT 341 (413)
T ss_pred HHHHHHHHHHHHcCCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCEe
Confidence 45677788888899999998743 266677777777765544
No 283
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=28.00 E-value=1.2e+02 Score=25.16 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHCCCeEEEcCCc
Q 028644 34 AALDLGQELVSKKLDLVYGGGS 55 (206)
Q Consensus 34 ~A~~lG~~lA~~g~~lv~GGg~ 55 (206)
.-+++++.+...|..+|.|+.+
T Consensus 195 ~~~~la~~l~~~G~D~IiG~H~ 216 (239)
T cd07381 195 EQRELARALIDAGADLVIGHHP 216 (239)
T ss_pred HHHHHHHHHHHCCCCEEEcCCC
Confidence 3467888888889999999887
No 284
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=27.95 E-value=99 Score=23.60 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHH----CCCeE-EE--cCC-ccChhHHHHHHHHhcCC
Q 028644 33 DAALDLGQELVS----KKLDL-VY--GGG-SVGLMGLVSHVVHRGGG 71 (206)
Q Consensus 33 ~~A~~lG~~lA~----~g~~l-v~--GGg-~~GlM~a~~~ga~~~gG 71 (206)
+.|+.+|+.||+ .|+.= |+ ||. ..|-+.|+++++.++|-
T Consensus 69 ~aa~~vG~~la~ra~~~gi~~vvfDrg~~~yhGrV~a~a~~are~Gl 115 (117)
T PRK05593 69 EAAKKVGKLIAERAKAKGIKQVVFDRGGYKYHGRVKALADAAREAGL 115 (117)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEcCCCCcccHHHHHHHHHHHHhCC
Confidence 567888888887 46532 22 332 25899999999999873
No 285
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=27.85 E-value=3.1e+02 Score=22.34 Aligned_cols=65 Identities=22% Similarity=0.219 Sum_probs=36.1
Q ss_pred eEEEcCCccChhHHH-HHHHHhcCCeEEEEeCCcccccccCCCCCceeecc---CCHHHHHHHHHhhCCeeEEe
Q 028644 48 DLVYGGGSVGLMGLV-SHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPV---ADMHQRKAEMARNSDCFIAL 117 (206)
Q Consensus 48 ~lv~GGg~~GlM~a~-~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~---~~~~~Rk~~m~~~sDa~Ivl 117 (206)
+.++=-.. |-|+.+ ++.+...|..|+=|...... ..++..+.+.+ .+|.+.-...+..+|++|..
T Consensus 21 R~ItN~SS-G~~G~~lA~~~~~~Ga~V~li~g~~~~----~~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~a 89 (185)
T PF04127_consen 21 RFITNRSS-GKMGAALAEEAARRGAEVTLIHGPSSL----PPPPGVKVIRVESAEEMLEAVKELLPSADIIIMA 89 (185)
T ss_dssp EEEEES---SHHHHHHHHHHHHTT-EEEEEE-TTS--------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-
T ss_pred eEecCCCc-CHHHHHHHHHHHHCCCEEEEEecCccc----cccccceEEEecchhhhhhhhccccCcceeEEEe
Confidence 34555554 999865 77888899998888532211 11222244444 46666666667778887764
No 286
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=27.83 E-value=61 Score=22.39 Aligned_cols=40 Identities=20% Similarity=0.393 Sum_probs=32.1
Q ss_pred chhHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHhHhc
Q 028644 152 YNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEVG 192 (206)
Q Consensus 152 w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~~~ 192 (206)
|+.+...|+.+.+.|++. .....+.+++.-.++++.++++
T Consensus 33 ~~~~~~yL~~L~~~gLI~-~~~~~Y~lTekG~~~l~~l~~~ 72 (77)
T PF14947_consen 33 YSTLKKYLKELEEKGLIK-KKDGKYRLTEKGKEFLEELEEL 72 (77)
T ss_dssp HHHHHHHHHHHHHTTSEE-EETTEEEE-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCee-CCCCEEEECccHHHHHHHHHHH
Confidence 567778889999999994 4667788899999999988765
No 287
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=27.78 E-value=69 Score=26.89 Aligned_cols=39 Identities=13% Similarity=-0.032 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCCC-ChHHHHHHHHHHHHHHHCCCeEEEcC
Q 028644 14 FKRVCVFCGSSTGK-RNCYRDAALDLGQELVSKKLDLVYGG 53 (206)
Q Consensus 14 ~~~I~Vfggs~~~~-~~~~~~~A~~lG~~lA~~g~~lv~GG 53 (206)
|++|+|+.++.... .-+.. .+..-=..|.+.|+.+..=+
T Consensus 1 ~kkVlills~~~~~dG~e~~-E~~~P~~~L~~aG~~V~~aS 40 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEIH-EAVLTLLALDRAGAEAVCFA 40 (217)
T ss_pred CCEEEEEEccCCCCCCEehh-HHHHHHHHHHHCCCEEEEEe
Confidence 35788887542211 11221 22345567778999876544
No 288
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=27.27 E-value=1.6e+02 Score=24.50 Aligned_cols=123 Identities=23% Similarity=0.256 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHCCCeEEE-cCCccChhHHHHHHHHhcCCeEEEEeCCc--c--cccccCCCCCceeeccCCHHHHHHHHH
Q 028644 34 AALDLGQELVSKKLDLVY-GGGSVGLMGLVSHVVHRGGGHVLGIIPKT--L--MNKEITGETVGEVKPVADMHQRKAEMA 108 (206)
Q Consensus 34 ~A~~lG~~lA~~g~~lv~-GGg~~GlM~a~~~ga~~~gG~viGv~P~~--~--~~~e~~~~~~~~~~~~~~~~~Rk~~m~ 108 (206)
+|-.|+++==+.|-.++- |.|. |-+..-.- ..-..+++++|=-+. . ..+......++.+.++..-. -..+-
T Consensus 23 Ral~ls~L~~~~g~~l~DIGaGt-Gsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A--p~~L~ 98 (187)
T COG2242 23 RALTLSKLRPRPGDRLWDIGAGT-GSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA--PEALP 98 (187)
T ss_pred HHHHHHhhCCCCCCEEEEeCCCc-cHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc--hHhhc
Confidence 344444443345666654 5554 76654333 334578999992110 0 00001111222222222110 11222
Q ss_pred hh--CCeeEEecCCcCcHHHHHHHHHHHHhCCCCcc--EEEEecCccchhHHHHHHHHHHcCCC
Q 028644 109 RN--SDCFIALPGGYGTLEELLEVITWAQLGIHDKP--VGLINVDGYYNSLLNFIDKAVDDGFI 168 (206)
Q Consensus 109 ~~--sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kP--iill~~~g~w~~l~~~l~~~~~~gfi 168 (206)
.. .|+ |+++|| |+++|+++++. ..+ || -++.|.- --+.+...++.+.+.|+.
T Consensus 99 ~~~~~da-iFIGGg-~~i~~ile~~~-~~l----~~ggrlV~nai-tlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 99 DLPSPDA-IFIGGG-GNIEEILEAAW-ERL----KPGGRLVANAI-TLETLAKALEALEQLGGR 154 (187)
T ss_pred CCCCCCE-EEECCC-CCHHHHHHHHH-HHc----CcCCeEEEEee-cHHHHHHHHHHHHHcCCc
Confidence 33 343 455666 99999999874 222 33 3455532 223344445566666653
No 289
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=27.19 E-value=2.2e+02 Score=19.82 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=40.0
Q ss_pred CCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHh-cCCeEEEEeCCc
Q 028644 12 SRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHR-GGGHVLGIIPKT 80 (206)
Q Consensus 12 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~-~gG~viGv~P~~ 80 (206)
++...++++-|.+. |-+ -+++.+..-|+..|-|...-|=..|.-.-... ..|..++++|+.
T Consensus 7 ~~~~~~~~lvS~s~--DGe------~ia~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk~G~~~~itpDG 68 (74)
T PF04028_consen 7 RRRRKIAALVSRSR--DGE------LIARVLERFGFRTIRGSSSRGGARALREMLRALKEGYSIAITPDG 68 (74)
T ss_pred cCCCCEEEEEccCc--CHH------HHHHHHHHcCCCeEEeCCCCcHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 34466777755443 333 36677778899999998776766665432222 267889999875
No 290
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=27.18 E-value=1.6e+02 Score=26.69 Aligned_cols=88 Identities=22% Similarity=0.257 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCcccccccCC--CCCceeeccC--CHHHHHHH
Q 028644 31 YRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITG--ETVGEVKPVA--DMHQRKAE 106 (206)
Q Consensus 31 ~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~--~~~~~~~~~~--~~~~Rk~~ 106 (206)
..+..+.+++..-...+.+|.|+|+.|. .+++.-.+.|-.++.|-.+...-.+... +.+ ..+..+ +...-++.
T Consensus 217 l~~~~~~~~~~~~~~~~iiIiG~G~~g~--~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~-~~i~gd~~~~~~L~~~ 293 (453)
T PRK09496 217 IRAVMSEFGRLEKPVKRVMIVGGGNIGY--YLAKLLEKEGYSVKLIERDPERAEELAEELPNT-LVLHGDGTDQELLEEE 293 (453)
T ss_pred HHHHHHHhCccCCCCCEEEEECCCHHHH--HHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCC-eEEECCCCCHHHHHhc
Confidence 4334444444332357788999986444 4666544557777777322211001111 111 122222 33444445
Q ss_pred HHhhCCeeEEecCCc
Q 028644 107 MARNSDCFIALPGGY 121 (206)
Q Consensus 107 m~~~sDa~IvlpGG~ 121 (206)
-+..+|++|++.+.-
T Consensus 294 ~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 294 GIDEADAFIALTNDD 308 (453)
T ss_pred CCccCCEEEECCCCc
Confidence 667899999887764
No 291
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=27.13 E-value=84 Score=23.90 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=27.4
Q ss_pred hCCeeEEecC--CcCcHH-HHHHHHHHHHhCCCCccEEEEecC-ccch-----hHHHHHHHHH
Q 028644 110 NSDCFIALPG--GYGTLE-ELLEVITWAQLGIHDKPVGLINVD-GYYN-----SLLNFIDKAV 163 (206)
Q Consensus 110 ~sDa~IvlpG--G~GTL~-El~~~~~~~~~g~~~kPiill~~~-g~w~-----~l~~~l~~~~ 163 (206)
.+|.+|+-.. |.|.+. ++..-+... ...+|.+.+++.. ..|. .-.+.++.+.
T Consensus 50 ~~d~iilgs~t~~~g~~p~~~~~fl~~l--~~~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l 110 (140)
T TIGR01754 50 NYDLVFLGTWTWERGRTPDEMKDFIAEL--GYKPSNVAIFGTGETQWGDDLYCGAVDRLAHFF 110 (140)
T ss_pred hCCEEEEEcCeeCCCcCCHHHHHHHHHh--cccCCEEEEEEcCCCCcCcchHhHHHHHHHHHH
Confidence 3676555543 566654 444444332 2356888888763 2553 3444444443
No 292
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.11 E-value=2.6e+02 Score=24.53 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=19.9
Q ss_pred CCCeEEEcCCccChhHHHHHHHHhcCCeEEEE
Q 028644 45 KKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 45 ~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 76 (206)
..+.++-|| . |.|=-+++-+...+-.++||
T Consensus 65 ~Dlvi~iGG-D-GT~L~aa~~~~~~~~PilGI 94 (287)
T PRK14077 65 SDFLISLGG-D-GTLISLCRKAAEYDKFVLGI 94 (287)
T ss_pred CCEEEEECC-C-HHHHHHHHHhcCCCCcEEEE
Confidence 456666666 4 77766666666666677887
No 293
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=27.08 E-value=1.7e+02 Score=24.95 Aligned_cols=68 Identities=19% Similarity=0.297 Sum_probs=40.0
Q ss_pred HHHHhhCCeeEEec--CCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 028644 105 AEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNA 182 (206)
Q Consensus 105 ~~m~~~sDa~Ivlp--GG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ 182 (206)
..++..||++|.-. .|+|.- +.|++ ..++|++..+..+. .+++ .+| ....+.-.+|+
T Consensus 265 ~~~~~~~d~~v~ps~~E~~~~~--~~EAm------a~g~PvI~s~~~~~-~e~i-------~~~-----~~G~~~~~~~~ 323 (371)
T cd04962 265 EELLSIADLFLLPSEKESFGLA--ALEAM------ACGVPVVASNAGGI-PEVV-------KHG-----ETGFLVDVGDV 323 (371)
T ss_pred HHHHHhcCEEEeCCCcCCCccH--HHHHH------HcCCCEEEeCCCCc-hhhh-------cCC-----CceEEcCCCCH
Confidence 35567899987653 345533 56666 47899999876542 2221 111 12223334588
Q ss_pred HHHHHHhHhcc
Q 028644 183 KELVQKLEVGF 193 (206)
Q Consensus 183 ee~~~~l~~~~ 193 (206)
+++.+.+.+..
T Consensus 324 ~~l~~~i~~l~ 334 (371)
T cd04962 324 EAMAEYALSLL 334 (371)
T ss_pred HHHHHHHHHHH
Confidence 88888877664
No 294
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=27.04 E-value=2.8e+02 Score=24.26 Aligned_cols=59 Identities=27% Similarity=0.383 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHHHhCCCCccEEEEecCccchh-----HHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHhH
Q 028644 123 TLEELLEVITWAQLGIHDKPVGLINVDGYYNS-----LLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLE 190 (206)
Q Consensus 123 TL~El~~~~~~~~~g~~~kPiill~~~g~w~~-----l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~ 190 (206)
|++..++.+....-.....|++|+. ||++ +.+|++.+.+.|. +-+++.|=|-|--+.+.
T Consensus 77 t~~~~lel~~~~r~~~~~~Pivlm~---Y~Npi~~~Gie~F~~~~~~~Gv------dGlivpDLP~ee~~~~~ 140 (265)
T COG0159 77 TLEDTLELVEEIRAKGVKVPIVLMT---YYNPIFNYGIEKFLRRAKEAGV------DGLLVPDLPPEESDELL 140 (265)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEE---eccHHHHhhHHHHHHHHHHcCC------CEEEeCCCChHHHHHHH
Confidence 5556666665444333467999985 6666 4555666655553 34566665555444443
No 295
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=27.01 E-value=4.2e+02 Score=23.44 Aligned_cols=124 Identities=13% Similarity=0.104 Sum_probs=59.5
Q ss_pred HHHccCCCceEEEEcCCCCCCChHHHHHHHHHH----HHHHHCCCe--------------EEEcCCccChh-HHHHHHHH
Q 028644 7 AAKAMSRFKRVCVFCGSSTGKRNCYRDAALDLG----QELVSKKLD--------------LVYGGGSVGLM-GLVSHVVH 67 (206)
Q Consensus 7 ~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG----~~lA~~g~~--------------lv~GGg~~GlM-~a~~~ga~ 67 (206)
++..+++...|-++.......++. .....+++ ....+.+.. +|+=+. |.. ....+..+
T Consensus 57 ~~~~t~~pfgvnl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--G~p~~~~i~~l~ 133 (330)
T PF03060_consen 57 IRALTDKPFGVNLFLPPPDPADEE-DAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGF--GLPPPEVIERLH 133 (330)
T ss_dssp HHHH-SS-EEEEEETTSTTHHHH--HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEES--SSC-HHHHHHHH
T ss_pred HHhhccccccccccccCcccchhh-hhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeec--ccchHHHHHHHH
Confidence 445566667788886554422220 11112222 233345554 444332 556 77778888
Q ss_pred hcCCeEEEEeCCcccccccCCCCCceeec------------cCCHHHHHHHHHhhCCeeEEecCCcCcHHHHHHHHHH
Q 028644 68 RGGGHVLGIIPKTLMNKEITGETVGEVKP------------VADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITW 133 (206)
Q Consensus 68 ~~gG~viGv~P~~~~~~e~~~~~~~~~~~------------~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~ 133 (206)
++|..++...++............+-++. ..+...=-..+.+..|.-|+..||++|-..+..++++
T Consensus 134 ~~gi~v~~~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal~l 211 (330)
T PF03060_consen 134 AAGIKVIPQVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIAAALAL 211 (330)
T ss_dssp HTT-EEEEEESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHHHHHHC
T ss_pred HcCCccccccCCHHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHHHHHHc
Confidence 99999999877643221111111111111 0112222223445567888999999999998877753
No 296
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=26.94 E-value=1.2e+02 Score=24.58 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=27.6
Q ss_pred HHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecC
Q 028644 106 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD 149 (206)
Q Consensus 106 ~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~ 149 (206)
.+-...|++|+.|--...+.++.+.+. ..+.||++++.+
T Consensus 51 ~i~~~~d~Iiv~~~~~~~~~~~l~~~~-----~~gIpvv~~d~~ 89 (257)
T PF13407_consen 51 AISQGVDGIIVSPVDPDSLAPFLEKAK-----AAGIPVVTVDSD 89 (257)
T ss_dssp HHHTTESEEEEESSSTTTTHHHHHHHH-----HTTSEEEEESST
T ss_pred HHHhcCCEEEecCCCHHHHHHHHHHHh-----hcCceEEEEecc
Confidence 344557999999888777777766653 346788888765
No 297
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=26.90 E-value=2e+02 Score=23.73 Aligned_cols=11 Identities=9% Similarity=0.244 Sum_probs=6.8
Q ss_pred CCCccEEEEec
Q 028644 138 IHDKPVGLINV 148 (206)
Q Consensus 138 ~~~kPiill~~ 148 (206)
..+.|++-++.
T Consensus 144 ~~~~~vlAiDi 154 (205)
T TIGR00197 144 ELPAPIVSVDI 154 (205)
T ss_pred hCCCCeEEEec
Confidence 34567776664
No 298
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=26.61 E-value=1.7e+02 Score=24.45 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=22.3
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHHCC--CeEEEcCCccChhHH
Q 028644 20 FCGSSTGKRNCYRDAALDLGQELVSKK--LDLVYGGGSVGLMGL 61 (206)
Q Consensus 20 fggs~~~~~~~~~~~A~~lG~~lA~~g--~~lv~GGg~~GlM~a 61 (206)
||||...+.+...+.++++..+. +.| ..||.||+. +....
T Consensus 6 ~GGs~l~~~~~~~~~~~~i~~l~-~~g~~~vvV~sg~g-~~~~~ 47 (239)
T cd04261 6 FGGTSVASIERIKRVAERIKKRK-KKGNQVVVVVSAMG-GTTDE 47 (239)
T ss_pred ECCcccCCHHHHHHHHHHHHHHH-HcCCCEEEEECCCC-chhHH
Confidence 77877654444555555555533 344 456778753 44433
No 299
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=26.57 E-value=1.8e+02 Score=24.49 Aligned_cols=69 Identities=19% Similarity=0.107 Sum_probs=41.4
Q ss_pred HHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhC-CCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcC
Q 028644 102 QRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 180 (206)
Q Consensus 102 ~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g-~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~ 180 (206)
.+....+..+|.+|+++ -..+ +.-++.+.... ..+.|++++|.+.. + +++ ..-+.+..
T Consensus 169 ~~a~~~~~~~dl~lviG-Tsl~---V~p~~~l~~~~~~~~~~~i~iN~~~~--~-------------~~~--~~~~~i~~ 227 (242)
T PRK00481 169 DEAYEALEEADLFIVIG-TSLV---VYPAAGLPYEAREHGAKTVEINLEPT--P-------------LDS--LFDLVIHG 227 (242)
T ss_pred HHHHHHHhcCCEEEEEC-CCce---EcCHhHHHHHHHHCCCeEEEECCCCC--C-------------CCC--ccCEEEEC
Confidence 45555667889999965 3333 32333333221 35789999997621 0 111 12367788
Q ss_pred CHHHHHHHhHh
Q 028644 181 NAKELVQKLEV 191 (206)
Q Consensus 181 ~~ee~~~~l~~ 191 (206)
+.++++..|.+
T Consensus 228 ~~~~~l~~l~~ 238 (242)
T PRK00481 228 KAGEVVPELVE 238 (242)
T ss_pred CHHHHHHHHHH
Confidence 99999988854
No 300
>PRK00208 thiG thiazole synthase; Reviewed
Probab=26.53 E-value=4.3e+02 Score=22.98 Aligned_cols=101 Identities=13% Similarity=0.128 Sum_probs=57.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EcCCccChhHHHHHHHHhcCCeEEEEeCCcccccccCCCCCce
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV-YGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGE 93 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv-~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~ 93 (206)
-++=|.+...... |+- ..+.+-.+.|.+.|+.++ |-.-. + ..++...+.|-..+ .| .-.+... ...
T Consensus 94 iKlEVi~d~~~ll-pd~-~~tv~aa~~L~~~Gf~vlpyc~~d--~--~~ak~l~~~G~~~v--mP-lg~pIGs-g~g--- 160 (250)
T PRK00208 94 IKLEVIGDDKTLL-PDP-IETLKAAEILVKEGFVVLPYCTDD--P--VLAKRLEEAGCAAV--MP-LGAPIGS-GLG--- 160 (250)
T ss_pred EEEEEecCCCCCC-cCH-HHHHHHHHHHHHCCCEEEEEeCCC--H--HHHHHHHHcCCCEe--CC-CCcCCCC-CCC---
Confidence 3566776554332 222 244556677778888887 65543 2 22333334454544 33 1111110 111
Q ss_pred eeccCCHHHHHHHHHhhCCeeEEecCCcCcHHHHHHHHH
Q 028644 94 VKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVIT 132 (206)
Q Consensus 94 ~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~ 132 (206)
..+ .+..+.+.+..+.-|+..||++|.++...++.
T Consensus 161 ---i~~-~~~i~~i~e~~~vpVIveaGI~tpeda~~Ame 195 (250)
T PRK00208 161 ---LLN-PYNLRIIIEQADVPVIVDAGIGTPSDAAQAME 195 (250)
T ss_pred ---CCC-HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHH
Confidence 112 34466666767899999999999999999885
No 301
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=26.43 E-value=4.4e+02 Score=23.16 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=15.7
Q ss_pred EEEcCCHHHHHHHhHhcc
Q 028644 176 LVSAPNAKELVQKLEVGF 193 (206)
Q Consensus 176 i~~~~~~ee~~~~l~~~~ 193 (206)
++.++|++|+++.++..+
T Consensus 271 vi~v~~~~el~~~~~~~~ 288 (291)
T PRK05678 271 VKVARTPSEIGELLKEVL 288 (291)
T ss_pred CeECCCHHHHHHHHHHHH
Confidence 678999999999998765
No 302
>KOG0503 consensus Asparaginase [Amino acid transport and metabolism]
Probab=26.38 E-value=1e+02 Score=28.18 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=27.3
Q ss_pred hhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEe
Q 028644 109 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 147 (206)
Q Consensus 109 ~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~ 147 (206)
+..|++|++.| .-||+|....+.+.-- .-|||++.+
T Consensus 120 ~~~~G~VV~HG-TDTLe~tAffls~~~~--t~KPIVitG 155 (368)
T KOG0503|consen 120 KSYDGIVVTHG-TDTLEETAFFLSFTIN--TLKPIVITG 155 (368)
T ss_pred cccCcEEEEcC-cchHHHHHHHHHHHHh--cCCcEEEec
Confidence 34799999985 7899999888865431 239999875
No 303
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=26.20 E-value=2.8e+02 Score=25.24 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=37.2
Q ss_pred EEEcCCCCCC--ChHHHHHHHHHHHHHHHCCCe-EEEcCCccChhHHHHHHHHhcCCeEEEE
Q 028644 18 CVFCGSSTGK--RNCYRDAALDLGQELVSKKLD-LVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 18 ~Vfggs~~~~--~~~~~~~A~~lG~~lA~~g~~-lv~GGg~~GlM~a~~~ga~~~gG~viGv 76 (206)
.+.++||... .++.+ .+..+.|.+.|+. ||.=||. |-+..+..=+-+.+=.+|||
T Consensus 67 T~lgssR~~~~~~~e~~---~~~~~~l~~~gId~LvvIGGD-gS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 67 TFLGSARFPEFKTEEGR---KVAAENLKKLGIDALVVIGGD-GSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred eEEeeCCCCCcccHHHH---HHHHHHHHHcCCCEEEEECCC-ChHHHHHHHHHhcCCcEEec
Confidence 4566777653 23333 3666777788773 4666666 88888888777777888998
No 304
>PRK08105 flavodoxin; Provisional
Probab=26.16 E-value=2.2e+02 Score=22.08 Aligned_cols=18 Identities=11% Similarity=0.200 Sum_probs=8.7
Q ss_pred hhHHHHHHHHhcCCeEEE
Q 028644 58 LMGLVSHVVHRGGGHVLG 75 (206)
Q Consensus 58 lM~a~~~ga~~~gG~viG 75 (206)
.+..+.+-..+.|+..++
T Consensus 103 ~~~~ld~~l~~lGa~~v~ 120 (149)
T PRK08105 103 AGKQFDALLQEQGAKRVG 120 (149)
T ss_pred HHHHHHHHHHHCCCeEee
Confidence 333333334445666655
No 305
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=26.02 E-value=1.5e+02 Score=20.49 Aligned_cols=33 Identities=36% Similarity=0.638 Sum_probs=22.9
Q ss_pred CeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCc
Q 028644 112 DCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDG 150 (206)
Q Consensus 112 Da~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g 150 (206)
--+|.|| +|++|+..+.+ .++|.. |--+++.+|
T Consensus 19 GKvi~lP---~SleeLl~ia~-~kfg~~--~~~v~~~dg 51 (69)
T PF11834_consen 19 GKVIWLP---DSLEELLKIAS-EKFGFS--ATKVLNEDG 51 (69)
T ss_pred CEEEEcC---ccHHHHHHHHH-HHhCCC--ceEEEcCCC
Confidence 4578889 59999988764 555653 555666554
No 306
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=25.99 E-value=3.1e+02 Score=21.13 Aligned_cols=40 Identities=8% Similarity=-0.006 Sum_probs=32.8
Q ss_pred HHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEE
Q 028644 36 LDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 36 ~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 76 (206)
.-+...|..+||.++|-|-. =-.+.+.+.|.+.+-.++++
T Consensus 21 ~iv~~~lr~~G~eVi~LG~~-vp~e~i~~~a~~~~~d~V~l 60 (137)
T PRK02261 21 KILDRALTEAGFEVINLGVM-TSQEEFIDAAIETDADAILV 60 (137)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 44566677799999999975 55688889999999999998
No 307
>PLN02740 Alcohol dehydrogenase-like
Probab=25.82 E-value=1.8e+02 Score=25.84 Aligned_cols=83 Identities=20% Similarity=0.253 Sum_probs=41.6
Q ss_pred CCeEEEcCCccChhHHHHHHHHhcCC-eEEEEeCCcccccccCC-CCCceeeccC----CHHHHHHHHHh-hCCeeEEec
Q 028644 46 KLDLVYGGGSVGLMGLVSHVVHRGGG-HVLGIIPKTLMNKEITG-ETVGEVKPVA----DMHQRKAEMAR-NSDCFIALP 118 (206)
Q Consensus 46 g~~lv~GGg~~GlM~a~~~ga~~~gG-~viGv~P~~~~~~e~~~-~~~~~~~~~~----~~~~Rk~~m~~-~sDa~Ivlp 118 (206)
...+|.|+|+.|++ +..-|+..|. +|+.+..... ..+... -..+..+... ++.++-..+.. ..|+++=..
T Consensus 200 ~~VlV~G~G~vG~~--a~q~ak~~G~~~Vi~~~~~~~-r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~ 276 (381)
T PLN02740 200 SSVAIFGLGAVGLA--VAEGARARGASKIIGVDINPE-KFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECA 276 (381)
T ss_pred CEEEEECCCHHHHH--HHHHHHHCCCCcEEEEcCChH-HHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECC
Confidence 46778887665555 4556777787 5888743211 111110 0112222221 13332222222 357777777
Q ss_pred CCcCcHHHHHHHH
Q 028644 119 GGYGTLEELLEVI 131 (206)
Q Consensus 119 GG~GTL~El~~~~ 131 (206)
|+..++.+.+..+
T Consensus 277 G~~~~~~~a~~~~ 289 (381)
T PLN02740 277 GNVEVLREAFLST 289 (381)
T ss_pred CChHHHHHHHHhh
Confidence 7766777666554
No 308
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=25.81 E-value=1.8e+02 Score=23.98 Aligned_cols=15 Identities=40% Similarity=0.505 Sum_probs=6.6
Q ss_pred HHHHHHhcCCeEEEE
Q 028644 62 VSHVVHRGGGHVLGI 76 (206)
Q Consensus 62 ~~~ga~~~gG~viGv 76 (206)
+.+.+.+.|..++||
T Consensus 69 ~~~~~~~~~~PvlGi 83 (209)
T PRK13146 69 VIEAVLAAGRPFLGI 83 (209)
T ss_pred HHHHHHhCCCcEEEE
Confidence 333333344455554
No 309
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=25.76 E-value=84 Score=26.54 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=17.3
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHH
Q 028644 20 FCGSSTGKRNCYRDAALDLGQELVS 44 (206)
Q Consensus 20 fggs~~~~~~~~~~~A~~lG~~lA~ 44 (206)
||||...+.+.+.+.++++.++..+
T Consensus 6 ~GGs~l~~~~~~~~~~~~I~~~~~~ 30 (244)
T cd04260 6 FGGTSVSTKERREQVAKKVKQAVDE 30 (244)
T ss_pred ECchhcCCHHHHHHHHHHHHHHHHC
Confidence 8898887656666667777666543
No 310
>PRK09330 cell division protein FtsZ; Validated
Probab=25.74 E-value=3.6e+02 Score=24.81 Aligned_cols=73 Identities=16% Similarity=0.323 Sum_probs=40.3
Q ss_pred HHHHHHHCCCeEEEc---CCc-cChhHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceeeccCCHHHHHHHHHhhCCe
Q 028644 38 LGQELVSKKLDLVYG---GGS-VGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDC 113 (206)
Q Consensus 38 lG~~lA~~g~~lv~G---Gg~-~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa 113 (206)
+-+.|-..+..+|+- ||. +|.=-.+++-|.+.|-.+++|.|..+. .|... ....=..--..|.+.+|.
T Consensus 91 I~~~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF~-fEG~~-------r~~nA~~gL~~L~~~~D~ 162 (384)
T PRK09330 91 IREALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPFS-FEGKK-------RMKQAEEGIEELRKHVDT 162 (384)
T ss_pred HHHHHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCcc-ccchh-------HHHHHHHHHHHHHHHCCE
Confidence 334443345555542 232 355557889999999999999764321 11100 011112234456678888
Q ss_pred eEEec
Q 028644 114 FIALP 118 (206)
Q Consensus 114 ~Ivlp 118 (206)
+|++|
T Consensus 163 vIvi~ 167 (384)
T PRK09330 163 LIVIP 167 (384)
T ss_pred EEEEe
Confidence 88886
No 311
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=25.62 E-value=88 Score=26.25 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=28.9
Q ss_pred HHHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecC
Q 028644 101 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD 149 (206)
Q Consensus 101 ~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~ 149 (206)
.++....++.+|.+|++ ||--.+.-++.+.+...++.|++++|.+
T Consensus 162 ~~~~~~~~~~~Dlllvi----GTSl~v~p~~~l~~~~~~~~~~i~iN~~ 206 (225)
T cd01411 162 IEEAIQAIEKADLLVIV----GTSFVVYPFAGLIDYRQAGANLIAINKE 206 (225)
T ss_pred HHHHHHHHhcCCEEEEE----CcCCeehhHHHHHHHHhCCCeEEEECCC
Confidence 35666677889977773 3544454445444433457899999975
No 312
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=25.58 E-value=1.2e+02 Score=24.99 Aligned_cols=34 Identities=9% Similarity=0.036 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 028644 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (206)
Q Consensus 16 ~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (206)
+|+|+..+- .++-+.+....+-+.+.+.|+.++.
T Consensus 1 ~igvi~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~ 34 (275)
T cd06320 1 KYGVVLKTL--SNEFWRSLKEGYENEAKKLGVSVDI 34 (275)
T ss_pred CeeEEEecC--CCHHHHHHHHHHHHHHHHhCCeEEE
Confidence 367775432 2455666666777777778887754
No 313
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.56 E-value=1.8e+02 Score=25.03 Aligned_cols=42 Identities=26% Similarity=0.513 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHhCCCCccEEEEecCccchhHHH-----HHHHHHHcCC
Q 028644 123 TLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLN-----FIDKAVDDGF 167 (206)
Q Consensus 123 TL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~-----~l~~~~~~gf 167 (206)
|++++++.+.-.+-...+.|++++. ||+++.. |++.+.+-|.
T Consensus 72 ~~~~~~~~~~~~r~~~~~~p~vlm~---Y~N~i~~~G~e~f~~~~~~aGv 118 (258)
T PRK13111 72 TLADVFELVREIREKDPTIPIVLMT---YYNPIFQYGVERFAADAAEAGV 118 (258)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEe---cccHHhhcCHHHHHHHHHHcCC
Confidence 4666776665444334568998774 7876554 5666666553
No 314
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=25.55 E-value=3e+02 Score=22.96 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=40.6
Q ss_pred HHHHhhCCeeEEec---CCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCC
Q 028644 105 AEMARNSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 181 (206)
Q Consensus 105 ~~m~~~sDa~Ivlp---GG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~ 181 (206)
...+..+|++|... .|+|.. ++|++ ..++||+.-+.+|. .++ ++++ . . -.++++
T Consensus 238 ~~~~~~~d~~v~ps~~~E~~~~~--~lEAm------a~G~PvI~~~~~~~-~e~-------i~~~-----~-~-g~l~~~ 294 (335)
T cd03802 238 AELLGNARALLFPILWEEPFGLV--MIEAM------ACGTPVIAFRRGAV-PEV-------VEDG-----V-T-GFLVDS 294 (335)
T ss_pred HHHHHhCcEEEeCCcccCCcchH--HHHHH------hcCCCEEEeCCCCc-hhh-------eeCC-----C-c-EEEeCC
Confidence 45668899988753 466653 67777 47899999887543 222 2111 1 1 123355
Q ss_pred HHHHHHHhHhcc
Q 028644 182 AKELVQKLEVGF 193 (206)
Q Consensus 182 ~ee~~~~l~~~~ 193 (206)
++++.+.|.+..
T Consensus 295 ~~~l~~~l~~l~ 306 (335)
T cd03802 295 VEELAAAVARAD 306 (335)
T ss_pred HHHHHHHHHHHh
Confidence 888888887653
No 315
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=25.55 E-value=1.9e+02 Score=26.41 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=11.0
Q ss_pred hhCCeeEEecCCc
Q 028644 109 RNSDCFIALPGGY 121 (206)
Q Consensus 109 ~~sDa~IvlpGG~ 121 (206)
..+|++|+++||.
T Consensus 105 ~~~D~IiavGGGS 117 (395)
T PRK15454 105 SGCDGVIAFGGGS 117 (395)
T ss_pred cCcCEEEEeCChH
Confidence 3789999999984
No 316
>PRK07308 flavodoxin; Validated
Probab=25.46 E-value=95 Score=23.69 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=20.9
Q ss_pred hhCCeeEEecCCc--CcHH-HHHHHHHHHH-hCCCCccEEEEec
Q 028644 109 RNSDCFIALPGGY--GTLE-ELLEVITWAQ-LGIHDKPVGLINV 148 (206)
Q Consensus 109 ~~sDa~IvlpGG~--GTL~-El~~~~~~~~-~g~~~kPiill~~ 148 (206)
..+|++|+...-. |.+. .+...+.+.+ ....+|++.+++.
T Consensus 47 ~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~~~l~~k~~~vfG~ 90 (146)
T PRK07308 47 EDADIAIVATYTYGDGELPDEIVDFYEDLADLDLSGKIYGVVGS 90 (146)
T ss_pred ccCCEEEEEeCccCCCCCCHHHHHHHHHHhcCCCCCCEEEEEee
Confidence 4556666554433 3444 3444443322 2235788888865
No 317
>PRK13669 hypothetical protein; Provisional
Probab=25.46 E-value=90 Score=22.26 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=16.0
Q ss_pred EEEcCCHHHHHHHhHhccC
Q 028644 176 LVSAPNAKELVQKLEVGFL 194 (206)
Q Consensus 176 i~~~~~~ee~~~~l~~~~~ 194 (206)
++.++|+||+++.|.++..
T Consensus 55 ~V~a~t~eeL~~kI~~~i~ 73 (78)
T PRK13669 55 VVEGETPEELVENIYAHLE 73 (78)
T ss_pred EeecCCHHHHHHHHHHHHh
Confidence 6789999999999987653
No 318
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.32 E-value=90 Score=26.25 Aligned_cols=30 Identities=23% Similarity=0.478 Sum_probs=26.7
Q ss_pred CeEEEcCCccChhHHHHHHHHhcCCeEEEEe
Q 028644 47 LDLVYGGGSVGLMGLVSHVVHRGGGHVLGII 77 (206)
Q Consensus 47 ~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~ 77 (206)
..+|||.|. |+=.+.+..-.++|.+||.|.
T Consensus 9 ~vlvTgaga-GIG~~~v~~La~aGA~ViAva 38 (245)
T KOG1207|consen 9 IVLVTGAGA-GIGKEIVLSLAKAGAQVIAVA 38 (245)
T ss_pred EEEeecccc-cccHHHHHHHHhcCCEEEEEe
Confidence 467999996 999999999999999999984
No 319
>PRK07102 short chain dehydrogenase; Provisional
Probab=25.23 E-value=1.1e+02 Score=24.97 Aligned_cols=15 Identities=7% Similarity=0.202 Sum_probs=9.4
Q ss_pred cCCHHHHHHHhHhcc
Q 028644 179 APNAKELVQKLEVGF 193 (206)
Q Consensus 179 ~~~~ee~~~~l~~~~ 193 (206)
.-+++++.+.+.+..
T Consensus 196 ~~~~~~~a~~i~~~~ 210 (243)
T PRK07102 196 TAQPEEVAKDIFRAI 210 (243)
T ss_pred cCCHHHHHHHHHHHH
Confidence 456777777666543
No 320
>PRK06696 uridine kinase; Validated
Probab=25.03 E-value=1.6e+02 Score=24.15 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=30.1
Q ss_pred HHHccCCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 028644 7 AAKAMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGG 53 (206)
Q Consensus 7 ~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GG 53 (206)
++....+...|+|-|+|..|. + ..|.+|.+.|.+.|..++.-+
T Consensus 15 ~~~~~~~~~iI~I~G~sgsGK-S---TlA~~L~~~l~~~g~~v~~~~ 57 (223)
T PRK06696 15 LTLNLTRPLRVAIDGITASGK-T---TFADELAEEIKKRGRPVIRAS 57 (223)
T ss_pred HHhCCCCceEEEEECCCCCCH-H---HHHHHHHHHHHHcCCeEEEec
Confidence 344456678999998888773 2 356788888877787776533
No 321
>PRK07677 short chain dehydrogenase; Provisional
Probab=24.96 E-value=1.2e+02 Score=24.90 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=16.6
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 028644 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGG 53 (206)
Q Consensus 16 ~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GG 53 (206)
++-|.|+++. ....+++.|+++|+.|+.-+
T Consensus 3 ~~lItG~s~g--------iG~~ia~~l~~~G~~Vi~~~ 32 (252)
T PRK07677 3 VVIITGGSSG--------MGKAMAKRFAEEGANVVITG 32 (252)
T ss_pred EEEEeCCCCh--------HHHHHHHHHHHCCCEEEEEe
Confidence 4556655442 33456666667777665433
No 322
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=24.92 E-value=5.4e+02 Score=23.51 Aligned_cols=113 Identities=14% Similarity=0.069 Sum_probs=61.1
Q ss_pred EEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE---cCCc----c-------ChhHHHHHHHHhcCCeEEEEeCC-cc
Q 028644 17 VCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY---GGGS----V-------GLMGLVSHVVHRGGGHVLGIIPK-TL 81 (206)
Q Consensus 17 I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~---GGg~----~-------GlM~a~~~ga~~~gG~viGv~P~-~~ 81 (206)
+.||-||... ....+...++.+.--+.|..++- -=|+ . -+..-+++-|.+.|..+|=+-+. ..
T Consensus 165 ~tvy~Gs~~E--~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~ 242 (348)
T PRK09250 165 ATIYFGSEES--RRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNN 242 (348)
T ss_pred EEEecCCHHH--HHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCCh
Confidence 4556554321 22233333444444456887764 1111 0 26677788888889998888432 11
Q ss_pred cccccC-----CCCCceeeccCCHHHHHHHHHhhC---CeeEEecCCcC-cHHHHHHHH
Q 028644 82 MNKEIT-----GETVGEVKPVADMHQRKAEMARNS---DCFIALPGGYG-TLEELLEVI 131 (206)
Q Consensus 82 ~~~e~~-----~~~~~~~~~~~~~~~Rk~~m~~~s---Da~IvlpGG~G-TL~El~~~~ 131 (206)
...+.. .....+.+..++..+|-+..++.| ..-|++-||.= +.+|+++..
T Consensus 243 ~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v 301 (348)
T PRK09250 243 GGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAV 301 (348)
T ss_pred hhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHH
Confidence 111111 111223445677788999999987 56566666643 555555444
No 323
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=24.90 E-value=1.8e+02 Score=24.47 Aligned_cols=39 Identities=18% Similarity=0.037 Sum_probs=29.8
Q ss_pred CCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 028644 12 SRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (206)
Q Consensus 12 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (206)
.+...|+|||||=++...-+...|+..-+.+...++.+|
T Consensus 19 ~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v 57 (236)
T PLN02945 19 PRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVL 57 (236)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEE
Confidence 455789999999887777777788777777777776554
No 324
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=24.85 E-value=2.8e+02 Score=20.60 Aligned_cols=78 Identities=12% Similarity=0.158 Sum_probs=44.5
Q ss_pred HHHHHHhcCCeEEEEeCCcccccccCCCCCceeeccCCHHHHHHHHHhhCCeeEEecCCc-----CcHHHHHHHHHHHHh
Q 028644 62 VSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGY-----GTLEELLEVITWAQL 136 (206)
Q Consensus 62 ~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~-----GTL~El~~~~~~~~~ 136 (206)
+.+.+++.|-+++.|-.+.. +...-.+.||-.+.+|++. =|.+++.++..
T Consensus 17 ~~ra~r~~Gi~tv~v~s~~d---------------------~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~---- 71 (110)
T PF00289_consen 17 IIRALRELGIETVAVNSNPD---------------------TVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIAR---- 71 (110)
T ss_dssp HHHHHHHTTSEEEEEEEGGG---------------------TTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHH----
T ss_pred HHHHHHHhCCcceeccCchh---------------------cccccccccccceecCcchhhhhhccHHHHhhHhh----
Confidence 45677788888888853221 1122455677777777555 56777766663
Q ss_pred CCCCccEEEEecCccchhHHHHHHHHHHcC
Q 028644 137 GIHDKPVGLINVDGYYNSLLNFIDKAVDDG 166 (206)
Q Consensus 137 g~~~kPiill~~~g~w~~l~~~l~~~~~~g 166 (206)
......+..+-||-+.-.+|-+.+.+.|
T Consensus 72 --~~g~~~i~pGyg~lse~~~fa~~~~~~g 99 (110)
T PF00289_consen 72 --KEGADAIHPGYGFLSENAEFAEACEDAG 99 (110)
T ss_dssp --HTTESEEESTSSTTTTHHHHHHHHHHTT
T ss_pred --hhcCcccccccchhHHHHHHHHHHHHCC
Confidence 2234444544455555555555554444
No 325
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=24.82 E-value=1.1e+02 Score=24.84 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=17.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGG 53 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GG 53 (206)
++|-|.|+++. ....+++.|+++|+.|+--+
T Consensus 6 k~vlItGas~g--------IG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 6 KVALVTGANTG--------LGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEEEc
Confidence 45666655431 23456666667777665444
No 326
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=24.72 E-value=1e+02 Score=23.65 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=20.9
Q ss_pred CCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 028644 12 SRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (206)
Q Consensus 12 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (206)
....+|+|+|..+.+ ..||+.|.++||.|+
T Consensus 8 ~~~l~I~iIGaGrVG---------~~La~aL~~ag~~v~ 37 (127)
T PF10727_consen 8 AARLKIGIIGAGRVG---------TALARALARAGHEVV 37 (127)
T ss_dssp ----EEEEECTSCCC---------CHHHHHHHHTTSEEE
T ss_pred CCccEEEEECCCHHH---------HHHHHHHHHCCCeEE
Confidence 345689999877765 368888899999865
No 327
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=24.69 E-value=3.5e+02 Score=21.33 Aligned_cols=44 Identities=16% Similarity=0.045 Sum_probs=25.4
Q ss_pred hhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccch
Q 028644 109 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYN 153 (206)
Q Consensus 109 ~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~ 153 (206)
+...+.|+++||. |..++++.++-......-+.+.++..|-+|-
T Consensus 18 ~~~~~~i~lsgGs-Tp~~~y~~L~~~~~~~~w~~v~~f~~DEr~v 61 (169)
T cd00458 18 EKDDMVIGLGTGS-TPAYFYKLLGEKLKRGEISDIVGFPTDERYV 61 (169)
T ss_pred hCCCEEEEECCCc-cHHHHHHHHHhhhhhCCccceEEEECccccC
Confidence 4567888998885 5555666554322111124566777766653
No 328
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=24.64 E-value=2.3e+02 Score=21.20 Aligned_cols=62 Identities=21% Similarity=0.304 Sum_probs=30.7
Q ss_pred CeeEEecCCcCcHHHH---HHHHHHHHh-CCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHH
Q 028644 112 DCFIALPGGYGTLEEL---LEVITWAQL-GIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKEL 185 (206)
Q Consensus 112 Da~IvlpGG~GTL~El---~~~~~~~~~-g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~ 185 (206)
|+ |++|||.++...+ -....|.+- ..+.|||.....+-+ -+.+.|.+.. + .-++..++++++
T Consensus 64 D~-liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~---------~La~aGll~~-~-~gv~~~~~~~~~ 129 (142)
T cd03132 64 DA-VVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGSD---------LLEAAGIPLE-D-PGVVTADDVKDV 129 (142)
T ss_pred CE-EEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchHH---------HHHHcCCCCC-C-CcEEEecCcchH
Confidence 55 5567887765421 112223222 246899987754311 1334555432 2 345555556553
No 329
>PRK07035 short chain dehydrogenase; Provisional
Probab=24.64 E-value=1.1e+02 Score=24.98 Aligned_cols=32 Identities=13% Similarity=0.066 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGG 54 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg 54 (206)
++|.|.|+++. ....+.+.|+++|+.|+--+.
T Consensus 9 k~vlItGas~g--------IG~~l~~~l~~~G~~Vi~~~r 40 (252)
T PRK07035 9 KIALVTGASRG--------IGEAIAKLLAQQGAHVIVSSR 40 (252)
T ss_pred CEEEEECCCcH--------HHHHHHHHHHHCCCEEEEEeC
Confidence 45666655431 235667777778887764443
No 330
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=24.48 E-value=1.5e+02 Score=24.34 Aligned_cols=30 Identities=3% Similarity=-0.058 Sum_probs=16.2
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHC---CC
Q 028644 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSK---KL 47 (206)
Q Consensus 16 ~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~---g~ 47 (206)
+|+|.... ..++-|.+..+.+-+.+.+. |+
T Consensus 1 ~Ig~i~~~--~~~~~~~~~~~~i~~~~~~~~~~g~ 33 (272)
T cd06300 1 KIGLSNSY--AGNTWRAQMLDEFKAQAKELKKAGL 33 (272)
T ss_pred CeEEeccc--cCChHHHHHHHHHHHHHHhhhccCC
Confidence 35666432 22455555666666666666 65
No 331
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=24.43 E-value=59 Score=24.92 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=19.3
Q ss_pred eEEecCCcCcHHHHH-H---HHHHHHhC-CCCccEEEEec
Q 028644 114 FIALPGGYGTLEELL-E---VITWAQLG-IHDKPVGLINV 148 (206)
Q Consensus 114 ~IvlpGG~GTL~El~-~---~~~~~~~g-~~~kPiill~~ 148 (206)
.|++|||.|..+-+. . ...+.+.- .++|||.....
T Consensus 40 alilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~ 79 (147)
T PF01965_consen 40 ALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICH 79 (147)
T ss_dssp EEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETT
T ss_pred EEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCC
Confidence 678899999666555 2 22222211 35789887643
No 332
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.41 E-value=1.2e+02 Score=25.15 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=23.6
Q ss_pred HHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEec
Q 028644 106 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 148 (206)
Q Consensus 106 ~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~ 148 (206)
++-...|++|+.|......++....+. ..+.|+++++.
T Consensus 51 ~~~~~vdgiii~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (272)
T cd06313 51 MASQGWDFIAVDPLGIGTLTEAVQKAI-----ARGIPVIDMGT 88 (272)
T ss_pred HHHcCCCEEEEcCCChHHhHHHHHHHH-----HCCCcEEEeCC
Confidence 344557999998865555555543332 34678888763
No 333
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.28 E-value=2.5e+02 Score=23.44 Aligned_cols=107 Identities=15% Similarity=0.106 Sum_probs=57.0
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE--EEcCCccChhHHHHHHHHhcCCeEEEEeCCcccccccCC---
Q 028644 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL--VYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITG--- 88 (206)
Q Consensus 14 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~l--v~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~--- 88 (206)
.+.|.|+=+. ++ +.+.++.+.|.+.|+.+ ||=-.+ +..+++.+-..+.....||.=. ....+...
T Consensus 4 ~~vv~Vir~~----~~---~~a~~ia~al~~gGi~~iEit~~tp-~a~~~I~~l~~~~~~~~vGAGT--Vl~~e~a~~ai 73 (201)
T PRK06015 4 QPVIPVLLID----DV---EHAVPLARALAAGGLPAIEITLRTP-AALDAIRAVAAEVEEAIVGAGT--ILNAKQFEDAA 73 (201)
T ss_pred CCEEEEEEcC----CH---HHHHHHHHHHHHCCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEeeEe--CcCHHHHHHHH
Confidence 3467776221 12 46678888888888866 344455 7777776665566667788721 11111110
Q ss_pred CCCceeeccCCHHHHHHHHHhhCCeeEEecCCcCcHHHHHHHHH
Q 028644 89 ETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVIT 132 (206)
Q Consensus 89 ~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~ 132 (206)
+-=.+.++.+.+.. ..+-....-.+.++|| .-|..|+..+|.
T Consensus 74 ~aGA~FivSP~~~~-~vi~~a~~~~i~~iPG-~~TptEi~~A~~ 115 (201)
T PRK06015 74 KAGSRFIVSPGTTQ-ELLAAANDSDVPLLPG-AATPSEVMALRE 115 (201)
T ss_pred HcCCCEEECCCCCH-HHHHHHHHcCCCEeCC-CCCHHHHHHHHH
Confidence 00013344444432 2222233345666775 458888887774
No 334
>cd01356 AcnX_swivel Putative Aconitase X swivel domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=24.20 E-value=1.4e+02 Score=23.04 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=26.5
Q ss_pred hCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEE
Q 028644 110 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGL 145 (206)
Q Consensus 110 ~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiil 145 (206)
.++-++++|+|.|+-.--.-.|.+.+.|..++-+++
T Consensus 42 i~gkILv~p~~kGSt~gs~vl~~l~~~g~aP~AiI~ 77 (123)
T cd01356 42 IAGKVLVLPGGKGSTVGSYVLYELARNGTAPAAIVF 77 (123)
T ss_pred ccceEEEecCCCCcchHHHHHHHHHHcCCCCeeEee
Confidence 478899999999998877777777766654444444
No 335
>PRK07109 short chain dehydrogenase; Provisional
Probab=24.14 E-value=3.1e+02 Score=24.00 Aligned_cols=55 Identities=11% Similarity=0.176 Sum_probs=31.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEEe
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGII 77 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~ 77 (206)
++|.|.|+|+. ..+.+.+.|+++|+.|+.-+...--.+...+...+.|+++..+.
T Consensus 9 k~vlITGas~g--------IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~ 63 (334)
T PRK07109 9 QVVVITGASAG--------VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVV 63 (334)
T ss_pred CEEEEECCCCH--------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEE
Confidence 56777766542 33567788888999887555432222333333344566666553
No 336
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=24.09 E-value=93 Score=27.10 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=22.0
Q ss_pred CCeEEEcCCccChhHHHHHHHHhcCCeEEEEeC
Q 028644 46 KLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIP 78 (206)
Q Consensus 46 g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P 78 (206)
...+|+|+|..|++ +..-|+..|..++.+..
T Consensus 167 ~~VlV~G~g~iG~~--a~~~a~~~G~~vi~~~~ 197 (329)
T TIGR02822 167 GRLGLYGFGGSAHL--TAQVALAQGATVHVMTR 197 (329)
T ss_pred CEEEEEcCCHHHHH--HHHHHHHCCCeEEEEeC
Confidence 46779887655644 55677888888888754
No 337
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=24.06 E-value=1.6e+02 Score=28.93 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=30.3
Q ss_pred CCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHH
Q 028644 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGL 61 (206)
Q Consensus 13 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a 61 (206)
.-..|+|+|||. +.|.+.+..+.+.|.+.|...|+=.|..+-|+.
T Consensus 545 sga~i~viCssD----~~Y~~~a~~~~~al~~ag~~~v~lAG~p~~~~~ 589 (619)
T TIGR00642 545 AGAQVAVLCSSD----KVYAQQGLEVAKALKAAGAKALYLAGAFKEFGD 589 (619)
T ss_pred cCCCEEEEeCCC----cchHHHHHHHHHHHHhCCCCEEEEeCCCcchhh
Confidence 335799999865 578899999999997766544333333354544
No 338
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=23.97 E-value=5e+02 Score=23.09 Aligned_cols=78 Identities=13% Similarity=0.054 Sum_probs=41.6
Q ss_pred HHHHHHhhCC-eeEEecCCcCcHHHHHHHHHHHHhC-CCCccEEEEe---cCccchhHHHHHHHHH---HcCCCCccccC
Q 028644 103 RKAEMARNSD-CFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLIN---VDGYYNSLLNFIDKAV---DDGFISPSQRS 174 (206)
Q Consensus 103 Rk~~m~~~sD-a~IvlpGG~GTL~El~~~~~~~~~g-~~~kPiill~---~~g~w~~l~~~l~~~~---~~gfi~~~~~~ 174 (206)
+-..+++... ++|+|.||.||-- | ..+||.+-+. ..-+.+-..+.+..+. .+.+-......
T Consensus 6 ~G~~~i~~~~va~viLaGG~GTRL-----------g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip 74 (323)
T cd04193 6 AGLKAIAEGKVAVLLLAGGQGTRL-----------GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIP 74 (323)
T ss_pred HhHHHHhcCCEEEEEECCCccccc-----------CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCce
Confidence 3334555555 6888999999952 3 2467776554 1236666555554432 11111111223
Q ss_pred cEEEc--CCHHHHHHHhHh
Q 028644 175 ILVSA--PNAKELVQKLEV 191 (206)
Q Consensus 175 ~i~~~--~~~ee~~~~l~~ 191 (206)
.++.+ ++-++..+++++
T Consensus 75 ~~imtS~~t~~~t~~~~~~ 93 (323)
T cd04193 75 WYIMTSEATHEETRKFFKE 93 (323)
T ss_pred EEEEcChhHhHHHHHHHHh
Confidence 33333 356777777775
No 339
>PRK05854 short chain dehydrogenase; Provisional
Probab=23.95 E-value=1.2e+02 Score=26.30 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=14.0
Q ss_pred HHHHHHHHHCCCeEEEcCCc
Q 028644 36 LDLGQELVSKKLDLVYGGGS 55 (206)
Q Consensus 36 ~~lG~~lA~~g~~lv~GGg~ 55 (206)
.++++.|+++|+.|+..+..
T Consensus 28 ~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 28 LGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred HHHHHHHHHCCCEEEEEeCC
Confidence 56677778888887765543
No 340
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=23.94 E-value=1.5e+02 Score=26.15 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe
Q 028644 12 SRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLD 48 (206)
Q Consensus 12 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~ 48 (206)
.++++|.|+.+ +.+. -+...|+.|.+.|.++|+.
T Consensus 2 ~~~~rili~t~-~~G~--GH~~~a~al~~~l~~~g~~ 35 (380)
T PRK13609 2 IKNPKVLILTA-HYGN--GHVQVAKTLEQTFRQKGIK 35 (380)
T ss_pred CCCCeEEEEEc-CCCc--hHHHHHHHHHHHHHhcCCC
Confidence 35678999854 4453 3446889999999999885
No 341
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=23.92 E-value=83 Score=27.59 Aligned_cols=62 Identities=21% Similarity=0.201 Sum_probs=35.5
Q ss_pred HHHHHHHhhCCeeEEecCCcCcHHH--HHHHHHHHHhC-CCCccEEEEecC-ccchhHHHHHHHHHHcC
Q 028644 102 QRKAEMARNSDCFIALPGGYGTLEE--LLEVITWAQLG-IHDKPVGLINVD-GYYNSLLNFIDKAVDDG 166 (206)
Q Consensus 102 ~Rk~~m~~~sDa~IvlpGG~GTL~E--l~~~~~~~~~g-~~~kPiill~~~-g~w~~l~~~l~~~~~~g 166 (206)
+=-.-|.+.||++++- +|||++ .-......+.. ..++|++|=-+. |.-.-..++...+.+++
T Consensus 47 eE~~e~~kia~AL~IN---IGTL~~~~~~~m~~A~~~An~~~~PvvLDPVgvgAt~~R~~~~~~LL~~~ 112 (265)
T COG2145 47 EEVEEFAKIADALLIN---IGTLSAERIQAMRAAIKAANESGKPVVLDPVGVGATKFRTKFALELLAEV 112 (265)
T ss_pred HHHHHHHHhccceEEe---eccCChHHHHHHHHHHHHHHhcCCCEEecCccCCchHHHHHHHHHHHHhc
Confidence 3455688999998875 678877 33333333333 578999873221 22223333445566655
No 342
>PRK06180 short chain dehydrogenase; Provisional
Probab=23.82 E-value=1.2e+02 Score=25.45 Aligned_cols=34 Identities=21% Similarity=-0.014 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCc
Q 028644 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGS 55 (206)
Q Consensus 14 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~ 55 (206)
.++|.|.|+++. ..+.+.+.|+++|+.|+..+.+
T Consensus 4 ~~~vlVtGasgg--------iG~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 4 MKTWLITGVSSG--------FGRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CCEEEEecCCCh--------HHHHHHHHHHhCcCEEEEEeCC
Confidence 356778776552 3456777778888887765543
No 343
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.80 E-value=1.6e+02 Score=25.92 Aligned_cols=51 Identities=25% Similarity=0.343 Sum_probs=30.9
Q ss_pred hCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecC--ccch-----hHHHHHHHHHHcC
Q 028644 110 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD--GYYN-----SLLNFIDKAVDDG 166 (206)
Q Consensus 110 ~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~--g~w~-----~l~~~l~~~~~~g 166 (206)
.+|. |+.-||=||+.+.+..+. ..+.||+-+|.+ ||.. ++.+.++++.+..
T Consensus 62 ~~d~-vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~G~lGFl~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 62 VCDL-VIVVGGDGSLLGAARALA-----RHNVPVLGINRGRLGFLTDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred CCCE-EEEEeCcHHHHHHHHHhc-----CCCCCEEEEeCCcccccccCCHHHHHHHHHHHHcCC
Confidence 3454 555688999988865542 357898877763 4544 3444455554433
No 344
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=23.78 E-value=3.7e+02 Score=22.21 Aligned_cols=44 Identities=25% Similarity=0.272 Sum_probs=27.7
Q ss_pred HHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccc
Q 028644 107 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYY 152 (206)
Q Consensus 107 m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w 152 (206)
+-+...+.|+++||. |...+++.+.-.. ...-+-|.++..|.+|
T Consensus 19 i~~~~~~~l~lsGGs-tp~~~y~~L~~~~-~i~w~~v~~f~~DEr~ 62 (219)
T cd01400 19 IAKRGRFSLALSGGS-TPKPLYELLAAAP-ALDWSKVHVFLGDERC 62 (219)
T ss_pred HHhcCeEEEEECCCc-cHHHHHHHhcccc-CCCCceEEEEEeeccc
Confidence 334578999999996 4447777765332 1223566666666666
No 345
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=23.76 E-value=57 Score=30.11 Aligned_cols=25 Identities=36% Similarity=0.732 Sum_probs=14.8
Q ss_pred eEEEcCCccChhHHHHHHHHhcCCeEE
Q 028644 48 DLVYGGGSVGLMGLVSHVVHRGGGHVL 74 (206)
Q Consensus 48 ~lv~GGg~~GlM~a~~~ga~~~gG~vi 74 (206)
.+|-|||+.|+|.|..- .+.|-.|+
T Consensus 3 viIIGgGaAGl~aA~~a--a~~g~~V~ 27 (409)
T PF03486_consen 3 VIIIGGGAAGLMAAITA--AEKGARVL 27 (409)
T ss_dssp EEEE--SHHHHHHHHHH--HHTT--EE
T ss_pred EEEECCCHHHHHHHHHH--HhCCCCEE
Confidence 46889999999988765 34454443
No 346
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=23.74 E-value=1.4e+02 Score=23.14 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=25.5
Q ss_pred HHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEE
Q 028644 38 LGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 38 lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 76 (206)
+.+.+.+++..|.+||| -++..-+...+...|.+|-+
T Consensus 55 l~~l~~~~~~VIa~GGG--~~~~~~~~~~L~~~g~vI~L 91 (158)
T PF01202_consen 55 LRELLKENNCVIACGGG--IVLKEENRELLKENGLVIYL 91 (158)
T ss_dssp HHHHHCSSSEEEEE-TT--GGGSHHHHHHHHHHSEEEEE
T ss_pred HHHHhccCcEEEeCCCC--CcCcHHHHHHHHhCCEEEEE
Confidence 43444445888888887 46666677778888898887
No 347
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=23.73 E-value=2.8e+02 Score=22.98 Aligned_cols=40 Identities=20% Similarity=0.298 Sum_probs=25.6
Q ss_pred HHHHHHHhhCCeeEEecC--CcCcHHHHHHHHHHHHhCCCCccEEEEecC
Q 028644 102 QRKAEMARNSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLINVD 149 (206)
Q Consensus 102 ~Rk~~m~~~sDa~IvlpG--G~GTL~El~~~~~~~~~g~~~kPiill~~~ 149 (206)
+.-..++..||++|.... +.|+ =+.|++ ..++||+..+..
T Consensus 270 ~~~~~~~~~ad~~l~~s~~e~~~~--~~~Ea~------~~g~PvI~~~~~ 311 (374)
T cd03817 270 EELPDYYKAADLFVFASTTETQGL--VLLEAM------AAGLPVVAVDAP 311 (374)
T ss_pred HHHHHHHHHcCEEEecccccCcCh--HHHHHH------HcCCcEEEeCCC
Confidence 345567788999775432 2332 256666 368999987764
No 348
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.68 E-value=3.1e+02 Score=20.37 Aligned_cols=91 Identities=18% Similarity=0.074 Sum_probs=48.2
Q ss_pred HHHHHHHHHHCCCeEEEcCCccChhHHHHHHHH---hcCC-eEEEEeCCcccccccCCCCCceeeccCCHHHHHHHHHhh
Q 028644 35 ALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVH---RGGG-HVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARN 110 (206)
Q Consensus 35 A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~---~~gG-~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~ 110 (206)
.+++.+.+.+.....++|-| +....+.++++ +.++ .+.++.. .|..+ -...++..
T Consensus 3 ~~~~a~~~~~~~~i~~~G~G--~s~~~a~e~~~kl~e~~~i~~~~~~~-----~e~~h--------------g~~~~~~~ 61 (153)
T cd05009 3 IKELAEKLKEAKSFYVLGRG--PNYGTALEGALKLKETSYIHAEAYSA-----GEFKH--------------GPIALVDE 61 (153)
T ss_pred HHHHHHHHhccCcEEEEcCC--CCHHHHHHHHHHHHHHHhhcceeccH-----HHhcc--------------ChhhhccC
Confidence 35667777778788888877 34444444444 4432 3333211 11111 12224456
Q ss_pred CCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEec
Q 028644 111 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 148 (206)
Q Consensus 111 sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~ 148 (206)
.|.+|++-+.-.|-++...++...+ ..+.|++++..
T Consensus 62 ~~~vi~is~~g~t~~~~~~~~~~~~--~~~~~vi~it~ 97 (153)
T cd05009 62 GTPVIFLAPEDRLEEKLESLIKEVK--ARGAKVIVITD 97 (153)
T ss_pred CCcEEEEecCChhHHHHHHHHHHHH--HcCCEEEEEec
Confidence 6766666644466666665654433 34567777643
No 349
>PRK06242 flavodoxin; Provisional
Probab=23.66 E-value=2.6e+02 Score=21.08 Aligned_cols=18 Identities=11% Similarity=0.178 Sum_probs=10.5
Q ss_pred hHHHHHHHHhcCCeEEEE
Q 028644 59 MGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 59 M~a~~~ga~~~gG~viGv 76 (206)
.....+-....|..++|-
T Consensus 91 ~~~l~~~l~~~g~~~~~~ 108 (150)
T PRK06242 91 HKALKKKLKEKGFEIVGE 108 (150)
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 444555555567777664
No 350
>PRK06382 threonine dehydratase; Provisional
Probab=23.63 E-value=4e+02 Score=24.27 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=29.0
Q ss_pred HHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcC--CeEEEEeCCc
Q 028644 36 LDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGG--GHVLGIIPKT 80 (206)
Q Consensus 36 ~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~g--G~viGv~P~~ 80 (206)
.++-+++..-.+.++.-|+ +|++..++++.++.+ -+++||-|..
T Consensus 165 ~Ei~eq~~~~d~vvvpvG~-GG~~~Gv~~~~k~~~p~~~vigVe~~~ 210 (406)
T PRK06382 165 LEIMEDLPDLDQIIVPVGG-GGLISGIALAAKHINPNVKIIGIESEL 210 (406)
T ss_pred HHHHHhcCCCCEEEEeeCh-HHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 3333333333566666665 599999999888753 5899997753
No 351
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.61 E-value=2.6e+02 Score=25.43 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=16.3
Q ss_pred eEEEcCCccChhHHHHHHHHhcCCeEEEEeC
Q 028644 48 DLVYGGGSVGLMGLVSHVVHRGGGHVLGIIP 78 (206)
Q Consensus 48 ~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P 78 (206)
.+|+|+|+.|+ ++++...+.|-.|+++-+
T Consensus 8 v~iiG~g~~G~--~~A~~l~~~G~~V~~~d~ 36 (450)
T PRK14106 8 VLVVGAGVSGL--ALAKFLKKLGAKVILTDE 36 (450)
T ss_pred EEEECCCHHHH--HHHHHHHHCCCEEEEEeC
Confidence 45666665442 555555566666666533
No 352
>PRK06182 short chain dehydrogenase; Validated
Probab=23.57 E-value=4.2e+02 Score=21.85 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=15.5
Q ss_pred CeEEEcCCccChhHHHHHHHHhcCCeEEEE
Q 028644 47 LDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 47 ~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 76 (206)
..+||||.. |+=.++++...+.|-+|+++
T Consensus 5 ~vlItGasg-giG~~la~~l~~~G~~V~~~ 33 (273)
T PRK06182 5 VALVTGASS-GIGKATARRLAAQGYTVYGA 33 (273)
T ss_pred EEEEECCCC-hHHHHHHHHHHHCCCEEEEE
Confidence 345555553 55555555555555555544
No 353
>PRK05866 short chain dehydrogenase; Provisional
Probab=23.52 E-value=3.5e+02 Score=23.05 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEE
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 76 (206)
++|-|.|+++ -....+++.|+++|+.|+..+....-.+.+.+...+.++.+..+
T Consensus 41 k~vlItGasg--------gIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~ 94 (293)
T PRK05866 41 KRILLTGASS--------GIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAV 94 (293)
T ss_pred CEEEEeCCCc--------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEE
No 354
>PRK12361 hypothetical protein; Provisional
Probab=23.41 E-value=1.3e+02 Score=28.70 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=21.4
Q ss_pred eEEecCCcCcHHHHHHHHHHHHhCCCCccEEEE
Q 028644 114 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLI 146 (206)
Q Consensus 114 ~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill 146 (206)
.|+.-||=||++|+...+. ..+.|+.++
T Consensus 300 ~Viv~GGDGTl~ev~~~l~-----~~~~~lgii 327 (547)
T PRK12361 300 IVIACGGDGTVTEVASELV-----NTDITLGII 327 (547)
T ss_pred EEEEECCCcHHHHHHHHHh-----cCCCCEEEe
Confidence 5667899999999998773 235677776
No 355
>PRK04155 chaperone protein HchA; Provisional
Probab=23.23 E-value=79 Score=27.81 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=21.2
Q ss_pred eeEEecCCcCcHHHHHHHHHHHHhC----CCCccEEEEe
Q 028644 113 CFIALPGGYGTLEELLEVITWAQLG----IHDKPVGLIN 147 (206)
Q Consensus 113 a~IvlpGG~GTL~El~~~~~~~~~g----~~~kPiill~ 147 (206)
..|++|||.|.+..+.+.-.+.++- ..+|||..+-
T Consensus 149 DaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAIC 187 (287)
T PRK04155 149 AAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLC 187 (287)
T ss_pred cEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEC
Confidence 4678999999877654432222221 3567776653
No 356
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=23.16 E-value=1.3e+02 Score=20.87 Aligned_cols=18 Identities=11% Similarity=0.054 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHCCCeEEE
Q 028644 34 AALDLGQELVSKKLDLVY 51 (206)
Q Consensus 34 ~A~~lG~~lA~~g~~lv~ 51 (206)
.=.++++.|+++|+.++.
T Consensus 31 ry~~~a~~L~~~G~~V~~ 48 (79)
T PF12146_consen 31 RYAHLAEFLAEQGYAVFA 48 (79)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 336789999999999884
No 357
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=23.14 E-value=83 Score=23.61 Aligned_cols=38 Identities=24% Similarity=0.184 Sum_probs=25.8
Q ss_pred CCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 028644 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (206)
Q Consensus 13 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (206)
+.++.+|||..+..-.. |...++.+-+.|.+.|..++.
T Consensus 86 ~~~~~avfg~Gd~~~~~-f~~~~k~l~~~l~~~G~~~~~ 123 (143)
T PF00258_consen 86 KGKKYAVFGLGDSGYGG-FCAAAKKLDERLEELGAKRVG 123 (143)
T ss_dssp TTCEEEEEEEEETTSST-TTHHHHHHHHHHHHTTEEEES
T ss_pred ccceeeeeecCCccchh-hhhHHHHHHHHHHHCCCEEEE
Confidence 44567777433222222 888899999999999888774
No 358
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=23.08 E-value=1.7e+02 Score=29.32 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 028644 13 RFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (206)
Q Consensus 13 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (206)
++++|+|++|......+.=...|+++.+.|-+.||.++
T Consensus 450 ~~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~ 487 (809)
T PRK14573 450 KKLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVS 487 (809)
T ss_pred CCcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEE
Confidence 34567776666555445445677778888877787765
No 359
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=23.06 E-value=1.4e+02 Score=25.58 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (206)
++|.|+||+.+.=.+-| -++|.|+++|+.+
T Consensus 61 ~~V~VlcG~GNNGGDGl-----v~AR~L~~~G~~V 90 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGL-----VAARHLAHFGYEV 90 (246)
T ss_pred CeEEEEECCCCCchhHH-----HHHHHHHHCCCeE
Confidence 57999998765323444 4777888888865
No 360
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=23.05 E-value=5.2e+02 Score=22.71 Aligned_cols=85 Identities=16% Similarity=0.279 Sum_probs=45.2
Q ss_pred CCChH-HHHHHHHHHHHHHH----CCCeEEE---cCCc-cChhHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceeec
Q 028644 26 GKRNC-YRDAALDLGQELVS----KKLDLVY---GGGS-VGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKP 96 (206)
Q Consensus 26 ~~~~~-~~~~A~~lG~~lA~----~g~~lv~---GGg~-~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~ 96 (206)
+.+|+ -++.|.+.-..|-+ ....+++ |||. .|.=-.+++-+.+.+..+++|.|..+.. |.. ..
T Consensus 61 G~~~~~G~~~a~e~~~~I~~~le~~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~~~~~vvt~Pf~~-Eg~-------~~ 132 (303)
T cd02191 61 GANPELGAEAAEEVQEAIDNIPVHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVTLPFSD-EGG-------IR 132 (303)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCccchhHHHHHHHHHHHhCCCEEEEEeCCccc-CCc-------cc
Confidence 34443 23444444333333 4445555 3332 4666677888899998999997654321 110 11
Q ss_pred cCCHHHHHHHHHhhCCeeEEec
Q 028644 97 VADMHQRKAEMARNSDCFIALP 118 (206)
Q Consensus 97 ~~~~~~Rk~~m~~~sDa~Ivlp 118 (206)
..+=...-..|.+.+|.+|+++
T Consensus 133 ~~NA~~~l~~L~~~~D~~iv~d 154 (303)
T cd02191 133 MLNAAEGFQTLVREVDNLMVIP 154 (303)
T ss_pred hhhHHHHHHHHHHhCCEEEEEe
Confidence 1111233445667777777776
No 361
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=23.02 E-value=2.2e+02 Score=26.01 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=36.4
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCeEEEcCCc---cChhHHHHHHHHhcCC-eEEEEe
Q 028644 25 TGKRNCYRDAALDLGQELVSKKLDLVYGGGS---VGLMGLVSHVVHRGGG-HVLGII 77 (206)
Q Consensus 25 ~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~---~GlM~a~~~ga~~~gG-~viGv~ 77 (206)
.+-++.+.+.-+.+-..++++|+.||+++|. .|+.+++.+-|.+.|- .-|+++
T Consensus 50 ~gY~~~~~~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~lkvA~V 106 (362)
T PF07287_consen 50 KGYAPDFVRDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLSLKVAVV 106 (362)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCCeeEEEE
Confidence 3456778888888888899999999999874 3444555555555553 335554
No 362
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=23.01 E-value=87 Score=26.43 Aligned_cols=88 Identities=14% Similarity=0.103 Sum_probs=53.3
Q ss_pred HHhhCCeeEEecCCcCcHHHHHHHHHHHH-----hC-CCCccEEEE---ecCccchh--HHHHHHHHHHcCC--CCcccc
Q 028644 107 MARNSDCFIALPGGYGTLEELLEVITWAQ-----LG-IHDKPVGLI---NVDGYYNS--LLNFIDKAVDDGF--ISPSQR 173 (206)
Q Consensus 107 m~~~sDa~IvlpGG~GTL~El~~~~~~~~-----~g-~~~kPiill---~~~g~w~~--l~~~l~~~~~~gf--i~~~~~ 173 (206)
+.+.+|++|+.|-..+|+.-+..=++-.- +. ..++|+++. |. .+|+. ..+-++.+.+.|+ +++...
T Consensus 93 La~wAD~~vVaPaTaNtlaKiA~GiaDnlltt~l~a~~~~~Pv~iaPaMN~-~Mw~~Pat~~nl~~L~~~G~~vi~P~~g 171 (209)
T PLN02496 93 LRRWADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNT-FMWNNPFTERHLMSIDELGISLIPPVTK 171 (209)
T ss_pred hhhhhCEEEEEeCCHHHHHHHHcccCCcHHHHHHHHcCCCCCEEEEeCCCH-HHHhCHHHHHHHHHHHHCCCEEECCCcC
Confidence 45579999999999999988764332111 11 136899986 44 47873 3344566666663 333222
Q ss_pred Cc------EEEcCCHHHHHHHhHhccCC
Q 028644 174 SI------LVSAPNAKELVQKLEVGFLF 195 (206)
Q Consensus 174 ~~------i~~~~~~ee~~~~l~~~~~~ 195 (206)
.. .=--.+|++++..+.++...
T Consensus 172 ~lAcg~~G~Grm~ep~~I~~~i~~~l~~ 199 (209)
T PLN02496 172 RLACGDYGNGAMAEPSLIYSTVRLFLES 199 (209)
T ss_pred cccCCCcCCCCCCCHHHHHHHHHHHHhh
Confidence 11 11124789999888877643
No 363
>PRK07308 flavodoxin; Validated
Probab=23.00 E-value=2.3e+02 Score=21.53 Aligned_cols=28 Identities=14% Similarity=-0.010 Sum_probs=12.7
Q ss_pred eEEEcCCc------cChhHHHHHHHHhcCCeEEE
Q 028644 48 DLVYGGGS------VGLMGLVSHVVHRGGGHVLG 75 (206)
Q Consensus 48 ~lv~GGg~------~GlM~a~~~ga~~~gG~viG 75 (206)
..|.|-|. .+.+..+.+-..+.|+.+++
T Consensus 85 ~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~ 118 (146)
T PRK07308 85 YGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGA 118 (146)
T ss_pred EEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEcc
Confidence 34666653 13334443333445665443
No 364
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=23.00 E-value=1.8e+02 Score=25.26 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=26.1
Q ss_pred HHHHHhhCCeeEEec--CCcCcHHHHHHHHHHHHhCCCCccEEEEecCc
Q 028644 104 KAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDG 150 (206)
Q Consensus 104 k~~m~~~sDa~Ivlp--GG~GTL~El~~~~~~~~~g~~~kPiill~~~g 150 (206)
-..++..||++|.-. -|+|.. +.|++ ..++||+.-+.+|
T Consensus 274 ~~~~~~~aDv~v~ps~~e~~g~~--~lEA~------a~G~PvI~s~~~~ 314 (388)
T TIGR02149 274 LVELLSNAEVFVCPSIYEPLGIV--NLEAM------ACGTPVVASATGG 314 (388)
T ss_pred HHHHHHhCCEEEeCCccCCCChH--HHHHH------HcCCCEEEeCCCC
Confidence 344668899887642 345544 46676 4789999887654
No 365
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=22.84 E-value=2.9e+02 Score=25.68 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=38.2
Q ss_pred CeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCcccccccC-CCCCceeeccCCHHHHHHHHHhhCCeeEEecCCcCcHH
Q 028644 47 LDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEIT-GETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLE 125 (206)
Q Consensus 47 ~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~-~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~ 125 (206)
-.+|.|.|+.|+. ++.-+...|.+|+.+-++... .+.+ ...+ +. ..+. . .+..+|.+|-..|..++++
T Consensus 204 tVvViG~G~IG~~--va~~ak~~Ga~ViV~d~d~~R-~~~A~~~G~-~~---~~~~---e-~v~~aDVVI~atG~~~~i~ 272 (413)
T cd00401 204 VAVVAGYGDVGKG--CAQSLRGQGARVIVTEVDPIC-ALQAAMEGY-EV---MTME---E-AVKEGDIFVTTTGNKDIIT 272 (413)
T ss_pred EEEEECCCHHHHH--HHHHHHHCCCEEEEEECChhh-HHHHHhcCC-EE---ccHH---H-HHcCCCEEEECCCCHHHHH
Confidence 4668899887774 444566778888776332211 1111 1111 11 1221 1 3467899988888777766
Q ss_pred H
Q 028644 126 E 126 (206)
Q Consensus 126 E 126 (206)
+
T Consensus 273 ~ 273 (413)
T cd00401 273 G 273 (413)
T ss_pred H
Confidence 4
No 366
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=22.80 E-value=3.5e+02 Score=20.58 Aligned_cols=53 Identities=13% Similarity=0.183 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCcc
Q 028644 97 VADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPS 171 (206)
Q Consensus 97 ~~~~~~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~ 171 (206)
..++..|-..++...|.= + ..++||+....+|..+.=++.|++++++|-++.+
T Consensus 55 ~~~~~~r~k~~l~~~~~~--------~--------------l~g~~i~~~~~EGLs~E~IE~Lk~Lv~eGKi~ne 107 (110)
T PF06819_consen 55 RSSFFKRFKFALKTEDGS--------A--------------LTGEKIISTDAEGLSKEDIEKLKKLVEEGKIENE 107 (110)
T ss_pred cccHHHHHHHHHHhcccc--------c--------------ccCCeEEeccccCCCHHHHHHHHHHHHcCCCccc
Confidence 357788888877665521 0 1268999999999999999999999999988654
No 367
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=22.79 E-value=2.3e+02 Score=20.74 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=34.5
Q ss_pred CCCccEEEEecCccchhHHHHHHH-HHHcCCCCccccCcEEEcCCHHHHHHHhHhc
Q 028644 138 IHDKPVGLINVDGYYNSLLNFIDK-AVDDGFISPSQRSILVSAPNAKELVQKLEVG 192 (206)
Q Consensus 138 ~~~kPiill~~~g~w~~l~~~l~~-~~~~gfi~~~~~~~i~~~~~~ee~~~~l~~~ 192 (206)
.+=+|++..+.+|.-+.+++.++. +.....|.-+-... .-+|..|+.+.|++.
T Consensus 14 h~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~~--~~~~~~e~a~~i~~~ 67 (95)
T TIGR00253 14 HHLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVATE--DREDKTLIAEALVKE 67 (95)
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecCC--ChhHHHHHHHHHHHH
Confidence 345899999999999999999876 44444443222111 124566777777654
No 368
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=22.76 E-value=2.8e+02 Score=21.04 Aligned_cols=93 Identities=15% Similarity=0.197 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCcccccccCCCCC-----ceeeccCCHHHH
Q 028644 29 NCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETV-----GEVKPVADMHQR 103 (206)
Q Consensus 29 ~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~-----~~~~~~~~~~~R 103 (206)
+...+.+..+.+.+.+.|-..++|-|..+ ..+.+-+.+.++.. ++-|.. .+.-..++.. ...-....+...
T Consensus 19 ~~i~~aa~~i~~~~~~gg~i~~~G~G~S~--~~a~~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 94 (138)
T PF13580_consen 19 EAIEKAADLIAEALRNGGRIFVCGNGHSA--AIASHFAADLGGLF-GVNRIL-LPAIALNDDALTAISNDLEYDEGFARQ 94 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEESTHHH--HHHHHHHHHHHCHS-SSTSSS--SEEETTSTHHHHHHHHTTGGGTHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCchhh--hHHHHHHHHHhcCc-CCCccc-ccccccccchHhhhhcccchhhHHHHH
Confidence 45667778888888888888899987533 33555566666541 221111 0100001100 000011234333
Q ss_pred HHHH--HhhCCeeEEecCCcCcHH
Q 028644 104 KAEM--ARNSDCFIALPGGYGTLE 125 (206)
Q Consensus 104 k~~m--~~~sDa~IvlpGG~GTL~ 125 (206)
-... +...|.+|++..+-.|..
T Consensus 95 ~~~~~~~~~gDvli~iS~SG~s~~ 118 (138)
T PF13580_consen 95 LLALYDIRPGDVLIVISNSGNSPN 118 (138)
T ss_dssp HHHHTT--TT-EEEEEESSS-SHH
T ss_pred HHHHcCCCCCCEEEEECCCCCCHH
Confidence 3334 678899999976655544
No 369
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=22.70 E-value=1.6e+02 Score=26.46 Aligned_cols=66 Identities=21% Similarity=0.309 Sum_probs=35.3
Q ss_pred eeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEe-----cCccchhHHHHHHHHHH---cCCCCccccCcE--EEcCCH
Q 028644 113 CFIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN-----VDGYYNSLLNFIDKAVD---DGFISPSQRSIL--VSAPNA 182 (206)
Q Consensus 113 a~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~-----~~g~w~~l~~~l~~~~~---~gfi~~~~~~~i--~~~~~~ 182 (206)
|+|.|.||.||- +|. ..|=.++. ..-|++-..+++..+.+ ++ .......+ ...+|-
T Consensus 2 a~vllaGG~GTR-----------LG~-~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~--~~~~IPl~IMTS~~Th 67 (315)
T cd06424 2 VFVLVAGGLGER-----------LGY-SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKG--EKMEIPFVIMTSDDTH 67 (315)
T ss_pred EEEEecCCCccc-----------cCC-CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhcc--CCCceeEEEECCCchh
Confidence 789999999993 342 33433333 23477766666655432 21 01111222 223556
Q ss_pred HHHHHHhHhc
Q 028644 183 KELVQKLEVG 192 (206)
Q Consensus 183 ee~~~~l~~~ 192 (206)
++..+++++.
T Consensus 68 ~~T~~~fe~n 77 (315)
T cd06424 68 SKTLKLLEEN 77 (315)
T ss_pred HHHHHHHHHC
Confidence 6777777653
No 370
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=22.22 E-value=4.6e+02 Score=22.39 Aligned_cols=41 Identities=29% Similarity=0.515 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHhCCCCccEEEEecCccchhH-----HHHHHHHHHcC
Q 028644 123 TLEELLEVITWAQLGIHDKPVGLINVDGYYNSL-----LNFIDKAVDDG 166 (206)
Q Consensus 123 TL~El~~~~~~~~~g~~~kPiill~~~g~w~~l-----~~~l~~~~~~g 166 (206)
|++.+++.+...+-...+.|++++. ||+++ .+|++.+.+.|
T Consensus 70 ~~~~~~~~v~~ir~~~~~~plv~m~---Y~Npi~~~G~e~f~~~~~~aG 115 (256)
T TIGR00262 70 TPEKCFELLKKVRQKHPNIPIGLLT---YYNLIFRKGVEEFYAKCKEVG 115 (256)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEE---eccHHhhhhHHHHHHHHHHcC
Confidence 5666776665443222467988764 67663 45666776655
No 371
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=22.16 E-value=1e+02 Score=25.86 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=39.6
Q ss_pred HHHHHhhCCeeEEec--CCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCC
Q 028644 104 KAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 181 (206)
Q Consensus 104 k~~m~~~sDa~Ivlp--GG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~ 181 (206)
...++..||++|.-. .|+|.- ++|++ ..++||+..+..++-+ +. + ....++..+|
T Consensus 266 ~~~~~~~~d~~l~ps~~e~~~~~--~~Ea~------a~G~pvI~~~~~~~~e-~~-------~-------~~~~~~~~~~ 322 (365)
T cd03809 266 LAALYRGARAFVFPSLYEGFGLP--VLEAM------ACGTPVIASNISSLPE-VA-------G-------DAALYFDPLD 322 (365)
T ss_pred HHHHHhhhhhhcccchhccCCCC--HHHHh------cCCCcEEecCCCCccc-ee-------c-------CceeeeCCCC
Confidence 344567888665432 223322 56666 4789999877643222 11 1 1234566678
Q ss_pred HHHHHHHhHhcc
Q 028644 182 AKELVQKLEVGF 193 (206)
Q Consensus 182 ~ee~~~~l~~~~ 193 (206)
++++.+.|.+..
T Consensus 323 ~~~~~~~i~~l~ 334 (365)
T cd03809 323 PEALAAAIERLL 334 (365)
T ss_pred HHHHHHHHHHHh
Confidence 999999988854
No 372
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=22.11 E-value=3e+02 Score=24.71 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=10.8
Q ss_pred hhCCeeEEecCCc
Q 028644 109 RNSDCFIALPGGY 121 (206)
Q Consensus 109 ~~sDa~IvlpGG~ 121 (206)
..+|++|+++||.
T Consensus 82 ~~~D~IiavGGGS 94 (380)
T cd08185 82 EGCDFVVGLGGGS 94 (380)
T ss_pred cCCCEEEEeCCcc
Confidence 3689999999984
No 373
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=22.09 E-value=1.9e+02 Score=24.19 Aligned_cols=40 Identities=20% Similarity=0.436 Sum_probs=22.8
Q ss_pred HhhCCeeE--Ee-cCCcCcHHHHH-HHHHHHHhCCCCccEEEEecC
Q 028644 108 ARNSDCFI--AL-PGGYGTLEELL-EVITWAQLGIHDKPVGLINVD 149 (206)
Q Consensus 108 ~~~sDa~I--vl-pGG~GTL~El~-~~~~~~~~g~~~kPiill~~~ 149 (206)
...+|.+| +| -|-.|.+.|-+ .+.. ++....+||+-++.-
T Consensus 117 ~~~~dvIVDalfG~G~~g~lrep~a~~Ie--~iN~~~~pivAVDiP 160 (203)
T COG0062 117 PESADVIVDALFGTGLSGPLREPFASLIE--AINASGKPIVAVDIP 160 (203)
T ss_pred cccCCEEEEeceecCCCCCCccHHHHHHH--HHHhcCCceEEEeCC
Confidence 34566655 22 35567666553 3332 233678999988853
No 374
>PRK12367 short chain dehydrogenase; Provisional
Probab=22.08 E-value=1.3e+02 Score=25.07 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=18.3
Q ss_pred CeEEEcCCccChhHHHHHHHHhcCCeEEEE
Q 028644 47 LDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 47 ~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 76 (206)
..|||||+. |+=.++++...+.|..|+.+
T Consensus 16 ~~lITGas~-gIG~ala~~l~~~G~~Vi~~ 44 (245)
T PRK12367 16 RIGITGASG-ALGKALTKAFRAKGAKVIGL 44 (245)
T ss_pred EEEEEcCCc-HHHHHHHHHHHHCCCEEEEE
Confidence 456666664 66666666666666666555
No 375
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=22.06 E-value=3e+02 Score=24.86 Aligned_cols=50 Identities=10% Similarity=0.025 Sum_probs=28.2
Q ss_pred Ccc-EEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHhHhc
Q 028644 140 DKP-VGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEVG 192 (206)
Q Consensus 140 ~kP-iill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~~~ 192 (206)
.+| +++++..-|+......+..+...-- -....+++.-++++++++..+.
T Consensus 125 srpllvilDd~fy~ks~Ryel~~LAr~~~---~~~~~V~ld~ple~~l~RN~~R 175 (340)
T TIGR03575 125 SRPLCLVLDDNFYYQSMRYEVYQLARKYS---LGFCQLFLDCPVESCLLRNKQR 175 (340)
T ss_pred hCCCCceecCCCCCHHHHHHHHHHHHHhC---CCEEEEEEeCCHHHHHHHHhcC
Confidence 577 4566655455555555554443211 1124567777777777777654
No 376
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=22.04 E-value=1.2e+02 Score=26.68 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=25.3
Q ss_pred HHHHHHHHhhC-CeeEEecCCcCcHHHHHHHH
Q 028644 101 HQRKAEMARNS-DCFIALPGGYGTLEELLEVI 131 (206)
Q Consensus 101 ~~Rk~~m~~~s-Da~IvlpGG~GTL~El~~~~ 131 (206)
.+|-..+-+.. +.-+||.||+|+-+|-+...
T Consensus 193 ~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~a 224 (287)
T PF01116_consen 193 FDRLKEIREAVPDIPLVLHGGSGLPDEQIRKA 224 (287)
T ss_dssp HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCHHHHHHH
Confidence 46777787888 99999999999999977655
No 377
>CHL00175 minD septum-site determining protein; Validated
Probab=22.02 E-value=2.1e+02 Score=24.17 Aligned_cols=38 Identities=11% Similarity=0.177 Sum_probs=25.3
Q ss_pred HccCCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 028644 9 KAMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDL 49 (206)
Q Consensus 9 ~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~l 49 (206)
++.+..+.|+|. |...+...-. .|..|+..|++.|+.+
T Consensus 10 ~~~~~~~vi~v~-s~KGGvGKTt--~a~nLA~~La~~g~~v 47 (281)
T CHL00175 10 KSATMSRIIVIT-SGKGGVGKTT--TTANLGMSIARLGYRV 47 (281)
T ss_pred hcCCCceEEEEE-cCCCCCcHHH--HHHHHHHHHHhCCCeE
Confidence 334445667776 4555555443 5788999999999754
No 378
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=21.95 E-value=1.8e+02 Score=27.36 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=24.2
Q ss_pred HHHHhhCCeeEEecCCcCcHHHHH-HHHHHHHhCCCCccEEEE
Q 028644 105 AEMARNSDCFIALPGGYGTLEELL-EVITWAQLGIHDKPVGLI 146 (206)
Q Consensus 105 ~~m~~~sDa~IvlpGG~GTL~El~-~~~~~~~~g~~~kPiill 146 (206)
..-+..+|.||-+.|. |.+.|=+ .. +++.|||+-
T Consensus 264 ~~~~~~adv~iG~S~~-G~~t~e~V~~-------Ma~~PiIfa 298 (432)
T COG0281 264 DLALAGADVLIGVSGV-GAFTEEMVKE-------MAKHPIIFA 298 (432)
T ss_pred cccccCCCEEEEcCCC-CCcCHHHHHH-------hccCCEEee
Confidence 4456779999999998 8876533 22 356699975
No 379
>PRK08339 short chain dehydrogenase; Provisional
Probab=21.87 E-value=1.4e+02 Score=25.00 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=12.1
Q ss_pred HHHHHHHHHCCCeEEEcC
Q 028644 36 LDLGQELVSKKLDLVYGG 53 (206)
Q Consensus 36 ~~lG~~lA~~g~~lv~GG 53 (206)
+.+++.|+++|+.|+.-+
T Consensus 22 ~aia~~l~~~G~~V~~~~ 39 (263)
T PRK08339 22 FGVARVLARAGADVILLS 39 (263)
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 456777777888765444
No 380
>PRK05867 short chain dehydrogenase; Provisional
Probab=21.86 E-value=4.4e+02 Score=21.41 Aligned_cols=54 Identities=13% Similarity=0.217 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEE
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 76 (206)
+++-|.|+++ -...++.+.|+++|+.|+..+....-.+...+...+.++.+..+
T Consensus 10 k~vlVtGas~--------gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~ 63 (253)
T PRK05867 10 KRALITGAST--------GIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPV 63 (253)
T ss_pred CEEEEECCCc--------hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEE
No 381
>PRK09004 FMN-binding protein MioC; Provisional
Probab=21.83 E-value=2.1e+02 Score=22.13 Aligned_cols=7 Identities=29% Similarity=0.691 Sum_probs=3.2
Q ss_pred cCCeEEE
Q 028644 69 GGGHVLG 75 (206)
Q Consensus 69 ~gG~viG 75 (206)
.|+..++
T Consensus 112 lGa~~v~ 118 (146)
T PRK09004 112 KGAKQIG 118 (146)
T ss_pred cCCeEee
Confidence 4554443
No 382
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.78 E-value=1.4e+02 Score=24.11 Aligned_cols=17 Identities=18% Similarity=0.102 Sum_probs=9.5
Q ss_pred HHHHHHHHHCCCeEEEc
Q 028644 36 LDLGQELVSKKLDLVYG 52 (206)
Q Consensus 36 ~~lG~~lA~~g~~lv~G 52 (206)
..+.+.|+++|+.++.-
T Consensus 19 ~~~a~~l~~~G~~vi~~ 35 (253)
T PRK08217 19 RAMAEYLAQKGAKLALI 35 (253)
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 34555566666665433
No 383
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=21.75 E-value=2e+02 Score=24.15 Aligned_cols=83 Identities=19% Similarity=0.307 Sum_probs=41.0
Q ss_pred CCeEEEcCCccChhHHHHHHHHhcCCe-EEEEeCCcccccccCC-CCCceeeccCCHHHHHHHHH--hhCCeeEEecCCc
Q 028644 46 KLDLVYGGGSVGLMGLVSHVVHRGGGH-VLGIIPKTLMNKEITG-ETVGEVKPVADMHQRKAEMA--RNSDCFIALPGGY 121 (206)
Q Consensus 46 g~~lv~GGg~~GlM~a~~~ga~~~gG~-viGv~P~~~~~~e~~~-~~~~~~~~~~~~~~Rk~~m~--~~sDa~IvlpGG~ 121 (206)
...+|+|+|+.|++ ++.-|+..|.. ++.+-... ...+... -..+..+......+.-..+. ...|.++=..|+.
T Consensus 122 ~~VlV~G~G~vG~~--~~~~ak~~G~~~Vi~~~~~~-~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~ 198 (280)
T TIGR03366 122 RRVLVVGAGMLGLT--AAAAAAAAGAARVVAADPSP-DRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGAT 198 (280)
T ss_pred CEEEEECCCHHHHH--HHHHHHHcCCCEEEEECCCH-HHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCCh
Confidence 46778887766655 34456667766 66662211 1111110 11122222222211111111 1368888888877
Q ss_pred CcHHHHHHHH
Q 028644 122 GTLEELLEVI 131 (206)
Q Consensus 122 GTL~El~~~~ 131 (206)
.++++....+
T Consensus 199 ~~~~~~~~~l 208 (280)
T TIGR03366 199 AAVRACLESL 208 (280)
T ss_pred HHHHHHHHHh
Confidence 7888776665
No 384
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=21.75 E-value=66 Score=27.86 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=28.0
Q ss_pred HHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEec
Q 028644 104 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 148 (206)
Q Consensus 104 k~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~ 148 (206)
-+++.+.+|.-|++-+|+||.++..+++.+ +---+|+|+
T Consensus 167 l~~i~~~~~vPvIvDAGiG~pSdaa~AMEl------G~daVLvNT 205 (247)
T PF05690_consen 167 LRIIIERADVPVIVDAGIGTPSDAAQAMEL------GADAVLVNT 205 (247)
T ss_dssp HHHHHHHGSSSBEEES---SHHHHHHHHHT------T-SEEEESH
T ss_pred HHHHHHhcCCcEEEeCCCCCHHHHHHHHHc------CCceeehhh
Confidence 566778889999999999999999999853 334467775
No 385
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=21.67 E-value=1.9e+02 Score=23.56 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 028644 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (206)
Q Consensus 14 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (206)
|+.|+|+ +...+.... ..|..|+..||+.|+.++
T Consensus 1 m~iI~v~-s~KGGvGKT--t~a~nla~~la~~g~~Vl 34 (246)
T TIGR03371 1 MKVIAIV-GVKGGVGKT--TLTANLASALKLLGEPVL 34 (246)
T ss_pred CcEEEEE-eCCCCccHH--HHHHHHHHHHHhCCCcEE
Confidence 4567776 445454443 367889999999998553
No 386
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=21.66 E-value=4.6e+02 Score=24.42 Aligned_cols=104 Identities=20% Similarity=0.282 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHC---------CCeEEEcCCccC---hhHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceeeccCCHH
Q 028644 34 AALDLGQELVSK---------KLDLVYGGGSVG---LMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMH 101 (206)
Q Consensus 34 ~A~~lG~~lA~~---------g~~lv~GGg~~G---lM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~ 101 (206)
.|...++.+|+. +..++||+-..| |+.+++..+.+.|..++-+....+.. + +...+....+
T Consensus 121 ~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~-~-----~~~~l~~~~~- 193 (445)
T PRK12422 121 LPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE-H-----LVSAIRSGEM- 193 (445)
T ss_pred HHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH-H-----HHHHHhcchH-
Confidence 445555555541 335788765444 78888888877777776553221110 0 0000111122
Q ss_pred HHHHHHHhhCCeeEE-----ecCCcCcHHHHHHHHHHHHhCCCCccEEEE
Q 028644 102 QRKAEMARNSDCFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVGLI 146 (206)
Q Consensus 102 ~Rk~~m~~~sDa~Iv-----lpGG~GTL~El~~~~~~~~~g~~~kPiill 146 (206)
++-+......|++++ +.|.-.|.+|++..+.... ..++++++.
T Consensus 194 ~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~--~~~k~IIlt 241 (445)
T PRK12422 194 QRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLH--TEGKLIVIS 241 (445)
T ss_pred HHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHH--HCCCcEEEe
Confidence 122223456676554 3455567888887764322 235777765
No 387
>PRK05920 aromatic acid decarboxylase; Validated
Probab=21.60 E-value=1.8e+02 Score=24.29 Aligned_cols=81 Identities=19% Similarity=0.196 Sum_probs=47.8
Q ss_pred hCCeeEEecCCcCcHHHHHHHHHHH-------HhCCCCccEEEEecCccchhH--HHHHHHHHHcCCC-CccccCcEEEc
Q 028644 110 NSDCFIALPGGYGTLEELLEVITWA-------QLGIHDKPVGLINVDGYYNSL--LNFIDKAVDDGFI-SPSQRSILVSA 179 (206)
Q Consensus 110 ~sDa~IvlpGG~GTL~El~~~~~~~-------~~g~~~kPiill~~~g~w~~l--~~~l~~~~~~gfi-~~~~~~~i~~~ 179 (206)
.+|++|+.|-..+|+.-+..-++-. ..-..++|+++.-.. .|..- .+-++.+.+.|.. -+.....+.--
T Consensus 93 ~aD~~vVaPaTantlakiA~GiaD~ll~~~a~~~L~~~~pvvi~P~~-m~~~~~~~~nl~~L~~~G~~ii~P~~g~y~~p 171 (204)
T PRK05920 93 RTDGMVIAPCSMGTLAAIAHGLSDNLIERAADVVLKERRKLILVPRE-TPLSLIHLENMLKLAEAGAIILPAIPAFYHKP 171 (204)
T ss_pred ccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEeCC-CCCCHHHHHHHHHHHHCCCEEeCCcccccCCC
Confidence 6899999999999988765432111 111257899987543 44432 2234556666642 12222334445
Q ss_pred CCHHHHHHHhHh
Q 028644 180 PNAKELVQKLEV 191 (206)
Q Consensus 180 ~~~ee~~~~l~~ 191 (206)
++.+|.++++-.
T Consensus 172 ~~~~~~~~f~~~ 183 (204)
T PRK05920 172 QTIDDLVDFVVA 183 (204)
T ss_pred CCHHHHHHHHHH
Confidence 677888877753
No 388
>KOG1888 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=21.55 E-value=44 Score=33.73 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=36.4
Q ss_pred CCccEEEEe-cCccchhHHHHHHHHHHc-C-------CCCcc--ccCcEEEcCCHHHHHHHhHhccCCccceee
Q 028644 139 HDKPVGLIN-VDGYYNSLLNFIDKAVDD-G-------FISPS--QRSILVSAPNAKELVQKLEVGFLFVSRICF 201 (206)
Q Consensus 139 ~~kPiill~-~~g~w~~l~~~l~~~~~~-g-------fi~~~--~~~~i~~~~~~ee~~~~l~~~~~~~~~~~~ 201 (206)
.+||-|+++ .+-||+.-.--.++++.+ | .|... ....=+.....++++++|.++.||..|.||
T Consensus 307 ~~KP~I~l~~~DP~y~~a~lHF~~L~~RYG~PIiilNLIKt~ekr~~E~IL~~eF~~ai~yLNqflp~e~rl~~ 380 (868)
T KOG1888|consen 307 VPKPDIVLDKRDPFYETAALHFDNLVQRYGNPIIILNLIKTNEKRPRESILREEFENAIDYLNQFLPPENRLKY 380 (868)
T ss_pred CCCCCeEEeccCCccchHHHHHHHHHHhcCCcEEEEEeeccccCCchhHHHHHHHHHHHHHHhccCCCcceeee
Confidence 466666654 345566544444554432 1 11111 111122346688999999999999999886
No 389
>PRK08589 short chain dehydrogenase; Validated
Probab=21.52 E-value=1.4e+02 Score=25.03 Aligned_cols=53 Identities=9% Similarity=0.023 Sum_probs=29.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhcCCeEEEE
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 76 (206)
+++-|.|+++. ..+.+++.|+++|+.|+.-+.+ ---+...+...+.++.+..+
T Consensus 7 k~vlItGas~g--------IG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~ 59 (272)
T PRK08589 7 KVAVITGASTG--------IGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAY 59 (272)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEE
Confidence 46667666542 3467788888899988765543 21122222233345565555
No 390
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.48 E-value=5.8e+02 Score=24.29 Aligned_cols=85 Identities=13% Similarity=0.064 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHCC-CeEEEcCCcc--ChhHHHHHHHHhcCCeEEEEeCC--cccccccCCCCCceee-ccCCHHHHHHHH
Q 028644 34 AALDLGQELVSKK-LDLVYGGGSV--GLMGLVSHVVHRGGGHVLGIIPK--TLMNKEITGETVGEVK-PVADMHQRKAEM 107 (206)
Q Consensus 34 ~A~~lG~~lA~~g-~~lv~GGg~~--GlM~a~~~ga~~~gG~viGv~P~--~~~~~e~~~~~~~~~~-~~~~~~~Rk~~m 107 (206)
...++.+.|.+.. -.|+.|+|-. |..+++.+=|-..|-.|+-- +. ...|.+ |+.+.-.+ ...+ ..-+ ..
T Consensus 195 ~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt-~~gkg~~~~~--hp~~~G~~G~~~~-~~~~-~~ 269 (572)
T PRK08979 195 QIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVST-LMGLGAFPGT--HKNSLGMLGMHGR-YEAN-MA 269 (572)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEc-ccccccCCCC--CcccccCCccCCC-HHHH-HH
Confidence 3455666777655 4556666642 67777776666667665521 11 111111 22111111 1111 2223 35
Q ss_pred HhhCCeeEEecCCcCc
Q 028644 108 ARNSDCFIALPGGYGT 123 (206)
Q Consensus 108 ~~~sDa~IvlpGG~GT 123 (206)
++.||.+|+++-.++.
T Consensus 270 ~~~aD~vl~vG~~~~~ 285 (572)
T PRK08979 270 MHNADLIFGIGVRFDD 285 (572)
T ss_pred HHhCCEEEEEcCCCCc
Confidence 5799999999865443
No 391
>PRK09072 short chain dehydrogenase; Provisional
Probab=21.42 E-value=1.4e+02 Score=24.60 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=16.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (206)
++|.|.|+++. ...++.+.|+++|+.|+-
T Consensus 6 ~~vlItG~s~~--------iG~~ia~~l~~~G~~V~~ 34 (263)
T PRK09072 6 KRVLLTGASGG--------IGQALAEALAAAGARLLL 34 (263)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEE
Confidence 45666655441 234566666667776543
No 392
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=21.40 E-value=4.1e+02 Score=22.35 Aligned_cols=67 Identities=21% Similarity=0.216 Sum_probs=35.1
Q ss_pred ChhHHHHHHHHhcCCeEEEEeCCcccccccCCCCCceeeccCCHHHHHHHHHhhCCeeEEecCCcCc---HHHHHHHHHH
Q 028644 57 GLMGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGT---LEELLEVITW 133 (206)
Q Consensus 57 GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlpGG~GT---L~El~~~~~~ 133 (206)
=-|.-++++.+..||..+ +. +..+....+++.+|++++=+| .++ .+.+..+...
T Consensus 18 ~~~~~~a~~~~~~g~~~~---~~-------------------~~~e~~~~~l~~~d~vvi~~G-~l~~~~~~~i~~~~~~ 74 (242)
T cd01170 18 VVMNFVANVLLAIGASPI---MS-------------------DAPEEVEELAKIAGALVINIG-TLTSEQIEAMLKAGKA 74 (242)
T ss_pred hhHhHHHHHHHHhCCchh---hc-------------------CCHHHHHHHHHHcCcEEEeCC-CCChHHHHHHHHHHHH
Confidence 457777888888777532 00 112334445678899888333 333 2222222211
Q ss_pred HHhCCCCccEEEEecC
Q 028644 134 AQLGIHDKPVGLINVD 149 (206)
Q Consensus 134 ~~~g~~~kPiill~~~ 149 (206)
...+++|++ +|..
T Consensus 75 --~~~~~~pvV-lDp~ 87 (242)
T cd01170 75 --ANQLGKPVV-LDPV 87 (242)
T ss_pred --HHhcCCCEE-Eccc
Confidence 123577864 5664
No 393
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=21.36 E-value=1.9e+02 Score=23.63 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=22.2
Q ss_pred HHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEec
Q 028644 106 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 148 (206)
Q Consensus 106 ~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~ 148 (206)
++-...|++|+.|......++....+ ...+.|+++++.
T Consensus 51 l~~~~vdgiIi~~~~~~~~~~~i~~~-----~~~~iPvV~~~~ 88 (273)
T cd06309 51 FIAQGVDVIILAPVVETGWDPVLKEA-----KAAGIPVILVDR 88 (273)
T ss_pred HHHcCCCEEEEcCCccccchHHHHHH-----HHCCCCEEEEec
Confidence 34456899998875544334443332 134678888874
No 394
>PRK08264 short chain dehydrogenase; Validated
Probab=21.34 E-value=4.3e+02 Score=21.10 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=18.0
Q ss_pred CeEEEcCCccChhHHHHHHHHhcCC-eEEEE
Q 028644 47 LDLVYGGGSVGLMGLVSHVVHRGGG-HVLGI 76 (206)
Q Consensus 47 ~~lv~GGg~~GlM~a~~~ga~~~gG-~viGv 76 (206)
..+|+||.. |+=.++++...+.|- .|+.+
T Consensus 8 ~vlItGgsg-~iG~~la~~l~~~G~~~V~~~ 37 (238)
T PRK08264 8 VVLVTGANR-GIGRAFVEQLLARGAAKVYAA 37 (238)
T ss_pred EEEEECCCc-hHHHHHHHHHHHCCcccEEEE
Confidence 456666664 666666666666665 55554
No 395
>TIGR00035 asp_race aspartate racemase.
Probab=21.28 E-value=4.1e+02 Score=21.99 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=43.0
Q ss_pred EEecCCcCcHHH--HHHH---HHHHHhCCCCccEEEEecC-----------ccchhHHHHHHHHHHcCCCCccccC-cEE
Q 028644 115 IALPGGYGTLEE--LLEV---ITWAQLGIHDKPVGLINVD-----------GYYNSLLNFIDKAVDDGFISPSQRS-ILV 177 (206)
Q Consensus 115 IvlpGG~GTL~E--l~~~---~~~~~~g~~~kPiill~~~-----------g~w~~l~~~l~~~~~~gfi~~~~~~-~i~ 177 (206)
|-+-||.|.+.= ++.- .+-.+.++...|+++++.- +-|+....++.++++ ++.+...+ .++
T Consensus 4 iGiiGGmgp~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~--~L~~~g~d~ivi 81 (229)
T TIGR00035 4 IGILGGMGPLATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAV--KLENAGADFIIM 81 (229)
T ss_pred EEEecCcCHHHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHH--HHHHcCCCEEEE
Confidence 556799998762 2222 2233445555677776542 345555555544333 12222233 567
Q ss_pred EcCCHHHHHHHhHhcc
Q 028644 178 SAPNAKELVQKLEVGF 193 (206)
Q Consensus 178 ~~~~~ee~~~~l~~~~ 193 (206)
-|+|..-.++.|++..
T Consensus 82 aCNTah~~~~~l~~~~ 97 (229)
T TIGR00035 82 PCNTAHKFAEDIQKAI 97 (229)
T ss_pred CCccHHHHHHHHHHhC
Confidence 7888888888888754
No 396
>PRK14072 6-phosphofructokinase; Provisional
Probab=21.24 E-value=4e+02 Score=24.68 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=35.3
Q ss_pred EEEcCCCCCC-----ChHHHHHHHHHHHHHHHCCC-eEEEcCCccChhHHHHHHHH---hcC--CeEEEE
Q 028644 18 CVFCGSSTGK-----RNCYRDAALDLGQELVSKKL-DLVYGGGSVGLMGLVSHVVH---RGG--GHVLGI 76 (206)
Q Consensus 18 ~Vfggs~~~~-----~~~~~~~A~~lG~~lA~~g~-~lv~GGg~~GlM~a~~~ga~---~~g--G~viGv 76 (206)
++.++||... +++ .-.++.+.|.+.|+ .||+=||. |-|..+.+=+. +.| -.+|||
T Consensus 73 t~LgssR~~~~~~~~~~~---~~~~~~~~l~~~~Id~LivIGGd-gS~~~a~~L~e~~~~~g~~i~vIgI 138 (416)
T PRK14072 73 GALGSCRYKLKSLEEDRA---EYERLLEVFKAHDIGYFFYNGGN-DSMDTALKVSQLAKKMGYPIRCIGI 138 (416)
T ss_pred eEeccCCCCCcccccChH---HHHHHHHHHHHcCCCEEEEECCh-HHHHHHHHHHHHHHHhCCCceEEEe
Confidence 4677777542 222 23566777778877 34666776 99988876443 245 588887
No 397
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=21.23 E-value=1.2e+02 Score=25.03 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=19.1
Q ss_pred EcCCCCCCC---hHHHHHHHHHHHHHHHCCCeEEEcCCc
Q 028644 20 FCGSSTGKR---NCYRDAALDLGQELVSKKLDLVYGGGS 55 (206)
Q Consensus 20 fggs~~~~~---~~~~~~A~~lG~~lA~~g~~lv~GGg~ 55 (206)
+|||....+ +...+.++++.+...+....||.|||.
T Consensus 5 lGGs~l~~~~~~~~i~~i~~~i~~~~~~~~viiV~ggG~ 43 (221)
T TIGR02076 5 LGGSVLSPEIDAEFIKEFANILRKLSDEHKVGVVVGGGK 43 (221)
T ss_pred echhhcCCCCCHHHHHHHHHHHHHHHhCCeEEEEECCcH
Confidence 466665432 333344444444332345677998874
No 398
>PLN02949 transferase, transferring glycosyl groups
Probab=21.16 E-value=2.8e+02 Score=25.93 Aligned_cols=71 Identities=13% Similarity=0.059 Sum_probs=44.4
Q ss_pred HHHHhhCCeeEEe--cCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 028644 105 AEMARNSDCFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNA 182 (206)
Q Consensus 105 ~~m~~~sDa~Ivl--pGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ 182 (206)
..++..||++|.- .-|+|.. +.|++ ..++|++..|.+|-+.+++.--. --..|| .++|+
T Consensus 349 ~~ll~~a~~~v~~s~~E~FGiv--vlEAM------A~G~PVIa~~~gGp~~eIV~~~~-~g~tG~----------l~~~~ 409 (463)
T PLN02949 349 VRLLGGAVAGLHSMIDEHFGIS--VVEYM------AAGAVPIAHNSAGPKMDIVLDED-GQQTGF----------LATTV 409 (463)
T ss_pred HHHHHhCcEEEeCCccCCCChH--HHHHH------HcCCcEEEeCCCCCcceeeecCC-CCcccc----------cCCCH
Confidence 3356788988853 3677864 66777 37899999998776544432000 001122 24688
Q ss_pred HHHHHHhHhccC
Q 028644 183 KELVQKLEVGFL 194 (206)
Q Consensus 183 ee~~~~l~~~~~ 194 (206)
+++.+.|.+...
T Consensus 410 ~~la~ai~~ll~ 421 (463)
T PLN02949 410 EEYADAILEVLR 421 (463)
T ss_pred HHHHHHHHHHHh
Confidence 888888877654
No 399
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=21.09 E-value=1.5e+02 Score=24.13 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=18.0
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHH
Q 028644 14 FKRVCVFCGSSTGKRNCYRDAALDLG 39 (206)
Q Consensus 14 ~~~I~Vfggs~~~~~~~~~~~A~~lG 39 (206)
+++|+|||||=++..--+...++++-
T Consensus 3 ~~~i~i~gGsFdP~H~GH~~l~~~a~ 28 (203)
T PRK00071 3 MKRIGLFGGTFDPPHYGHLAIAEEAA 28 (203)
T ss_pred CcEEEEEeeCCCccCHHHHHHHHHHH
Confidence 45799999998776666655555443
No 400
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=21.09 E-value=5.7e+02 Score=22.43 Aligned_cols=154 Identities=15% Similarity=0.084 Sum_probs=86.4
Q ss_pred ChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHH-hc-CCeEEEEeCCcccccccCCCCCceeecc----CCHH
Q 028644 28 RNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVH-RG-GGHVLGIIPKTLMNKEITGETVGEVKPV----ADMH 101 (206)
Q Consensus 28 ~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~-~~-gG~viGv~P~~~~~~e~~~~~~~~~~~~----~~~~ 101 (206)
.+...+.+.++...|.+++..++-=+++ -+-+++--.+ +. .=.|+||+|......+...+...-++-+ .+-.
T Consensus 49 ~e~I~~~~~~i~~~l~~~~ik~lVIACN--TASa~al~~LR~~~~iPVvGviPaik~A~~~t~~~~IgViaT~~Tvks~~ 126 (269)
T COG0796 49 EEEIRERTLEIVDFLLERGIKALVIACN--TASAVALEDLREKFDIPVVGVIPAIKPAVALTRNGRIGVIATPATVKSNA 126 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecc--hHHHHHHHHHHHhCCCCEEEeccchHHHHHhccCCeEEEEeccchhccHH
Confidence 3456788889999999999988888886 2333333333 32 4579999997654433333332222222 2223
Q ss_pred HHHHHHHhhCCeeEEecCCcCcHHHHHH-----------HHHHHHhC---CCCccEEEEecCccchhHHHHHHHHHHcCC
Q 028644 102 QRKAEMARNSDCFIALPGGYGTLEELLE-----------VITWAQLG---IHDKPVGLINVDGYYNSLLNFIDKAVDDGF 167 (206)
Q Consensus 102 ~Rk~~m~~~sDa~IvlpGG~GTL~El~~-----------~~~~~~~g---~~~kPiill~~~g~w~~l~~~l~~~~~~gf 167 (206)
.|+.+---.+|.-|-.-|..+ |-++.| ++. ..+. ..+.=.++|+-. +|--+...+++...+
T Consensus 127 y~~~i~~~~~~~~V~~la~p~-lV~lvE~g~~~~~~~~~~l~-~~l~~~~~~~~DtlVLGCT-HyPll~~~i~~~~~~-- 201 (269)
T COG0796 127 YRDLIARFAPDCEVESLACPE-LVPLVEEGIRGGPVALEVLK-EYLPPLQEAGPDTLVLGCT-HYPLLKPEIQQVLGE-- 201 (269)
T ss_pred HHHHHHHhCCCCEEEEecCcc-hHHHHhcccccCHHHHHHHH-HHhcchhccCCCEEEEeCc-CcHHHHHHHHHHhCC--
Confidence 444444346777666655322 111111 111 1111 112346677766 666666656554432
Q ss_pred CCccccCcEEEcCCHHHHHHHhHhccCC
Q 028644 168 ISPSQRSILVSAPNAKELVQKLEVGFLF 195 (206)
Q Consensus 168 i~~~~~~~i~~~~~~ee~~~~l~~~~~~ 195 (206)
.+.++|+.++.++.+.++..+
T Consensus 202 -------~v~lids~~~~a~~~~~~L~~ 222 (269)
T COG0796 202 -------HVALIDSGAETARRLARLLSP 222 (269)
T ss_pred -------CceEeCCHHHHHHHHHHHhCh
Confidence 467788888888888776543
No 401
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=21.07 E-value=2e+02 Score=23.10 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 028644 14 FKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (206)
Q Consensus 14 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (206)
|+.++|.|.+..|.. ...+++-+.|.++|+.+-
T Consensus 2 ~~Il~ivG~k~SGKT----TLie~lv~~L~~~G~rVa 34 (161)
T COG1763 2 MKILGIVGYKNSGKT----TLIEKLVRKLKARGYRVA 34 (161)
T ss_pred CcEEEEEecCCCChh----hHHHHHHHHHHhCCcEEE
Confidence 567888888777632 244677778888887653
No 402
>PRK02551 flavoprotein NrdI; Provisional
Probab=21.07 E-value=1.3e+02 Score=24.04 Aligned_cols=44 Identities=9% Similarity=-0.012 Sum_probs=23.1
Q ss_pred HHHHHccCCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 028644 5 KAAAKAMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVY 51 (206)
Q Consensus 5 ~~~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~ 51 (206)
+|+....++....||+||.+..=.+.|...|+.+.+ +-+..+++
T Consensus 85 dFL~~~~N~~~~~gVigsGNrNfg~~F~~aa~~ia~---~~~vP~L~ 128 (154)
T PRK02551 85 DFIAYHDNAKRCLGIIGSGNRNFNNQYCLTAKQYAK---RFGFPMLA 128 (154)
T ss_pred HHHcchhhhhheEEEEeecccHHHHHHHHHHHHHHH---HcCCCEEE
Confidence 455444555667888866543225556544444333 23555543
No 403
>PRK07062 short chain dehydrogenase; Provisional
Probab=21.03 E-value=1.4e+02 Score=24.59 Aligned_cols=32 Identities=22% Similarity=0.171 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGG 54 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg 54 (206)
+++-|.|+++. ..+++++.|+++|+.|+.-+.
T Consensus 9 k~~lItGas~g--------iG~~ia~~l~~~G~~V~~~~r 40 (265)
T PRK07062 9 RVAVVTGGSSG--------IGLATVELLLEAGASVAICGR 40 (265)
T ss_pred CEEEEeCCCch--------HHHHHHHHHHHCCCeEEEEeC
Confidence 46666665541 335677777888888765443
No 404
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=21.01 E-value=63 Score=29.92 Aligned_cols=43 Identities=21% Similarity=0.358 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCc----------cChhHHHHHHHHhcCCeEEE
Q 028644 33 DAALDLGQELVSKKLDLVYGGGS----------VGLMGLVSHVVHRGGGHVLG 75 (206)
Q Consensus 33 ~~A~~lG~~lA~~g~~lv~GGg~----------~GlM~a~~~ga~~~gG~viG 75 (206)
+.|+.|++.|.++|+.|++||-. .|+-+.-+.-+++.-|.++-
T Consensus 307 ~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vn 359 (399)
T PF00464_consen 307 KNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVN 359 (399)
T ss_dssp HHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-E
T ss_pred HHHHHHHHHHhhCCcEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeec
Confidence 45677888888999999987632 36666777777877776665
No 405
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=20.87 E-value=3.7e+02 Score=25.16 Aligned_cols=67 Identities=21% Similarity=0.161 Sum_probs=42.9
Q ss_pred HHHHHHHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCC
Q 028644 102 QRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFIS 169 (206)
Q Consensus 102 ~Rk~~m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~ 169 (206)
-|+-+=...++++++-|==+|||.|.+++..+.+-.- -+||+--....=-|..++-|.-....|+|.
T Consensus 319 l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~g-y~~viSHRSGETeD~tIAdLAVa~~agqIK 385 (423)
T COG0148 319 LKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAG-YTAVISHRSGETEDTTIADLAVATNAGQIK 385 (423)
T ss_pred HHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCC-CeEEEecCCCCcccchHHHHHHHhCCCeee
Confidence 4555566668999999999999999999998887432 167766543222233333333334445543
No 406
>PRK07814 short chain dehydrogenase; Provisional
Probab=20.86 E-value=1.5e+02 Score=24.55 Aligned_cols=32 Identities=6% Similarity=0.056 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGG 54 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg 54 (206)
+++-|.|+++. ...++.+.|+++|+.|+.-+.
T Consensus 11 ~~vlItGasgg--------IG~~~a~~l~~~G~~Vi~~~r 42 (263)
T PRK07814 11 QVAVVTGAGRG--------LGAAIALAFAEAGADVLIAAR 42 (263)
T ss_pred CEEEEECCCCh--------HHHHHHHHHHHCCCEEEEEeC
Confidence 56777766442 335677777788888765443
No 407
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=20.80 E-value=2.4e+02 Score=23.55 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=18.8
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHHCCC--eEEEcCC
Q 028644 20 FCGSSTGKRNCYRDAALDLGQELVSKKL--DLVYGGG 54 (206)
Q Consensus 20 fggs~~~~~~~~~~~A~~lG~~lA~~g~--~lv~GGg 54 (206)
||||...+.+...+.++++.++ .+.|+ .||.||+
T Consensus 6 ~GGs~l~~~~~~~~~~~~i~~l-~~~g~~~viV~sg~ 41 (239)
T cd04246 6 FGGTSVADIERIKRVAERIKKA-VKKGYQVVVVVSAM 41 (239)
T ss_pred ECccccCCHHHHHHHHHHHHHH-HHcCCCEEEEECCC
Confidence 7787766444455555555443 33444 4667754
No 408
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.79 E-value=2e+02 Score=23.65 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=20.8
Q ss_pred HHhhCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEec
Q 028644 107 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 148 (206)
Q Consensus 107 m~~~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~ 148 (206)
.-...|++|+.+.....+.++...+. ..+.|+++++.
T Consensus 52 ~~~~~Dgiii~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (282)
T cd06318 52 LTRGVNVLIINPVDPEGLVPAVAAAK-----AAGVPVVVVDS 88 (282)
T ss_pred HHcCCCEEEEecCCccchHHHHHHHH-----HCCCCEEEecC
Confidence 34457888887654443334333221 34678887764
No 409
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=20.76 E-value=2.8e+02 Score=20.70 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHHHhCC--CCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCC--HHHHHHHhH
Q 028644 123 TLEELLEVITWAQLGI--HDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN--AKELVQKLE 190 (206)
Q Consensus 123 TL~El~~~~~~~~~g~--~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~--~ee~~~~l~ 190 (206)
+++-+-.++...|... .=+-+.++|...+++.++..+.. |++++..+.+.++++ .+++.+.+.
T Consensus 79 ~~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~-----~l~~~~~~ki~~~~~~~~~~L~~~i~ 145 (158)
T smart00516 79 DLSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKP-----FLDEKTREKIRFVGNDSKEELLEYID 145 (158)
T ss_pred cHHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHh-----hcChhhhccEEEeCCCCHHHHHhhCC
Confidence 3554544444444332 33688899987666655554443 677777788888887 777777764
No 410
>PF01989 DUF126: Protein of unknown function DUF126; InterPro: IPR002840 These archaebacterial proteins have no known function.; PDB: 2HI6_A.
Probab=20.75 E-value=64 Score=23.15 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=17.8
Q ss_pred hCCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEE
Q 028644 110 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGL 145 (206)
Q Consensus 110 ~sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiil 145 (206)
.++-++++|+|.|+-.--.-.+.+.+.|..++-+++
T Consensus 27 i~gkILv~p~~kGSt~gs~vl~~l~~~g~aPaAiI~ 62 (82)
T PF01989_consen 27 IAGKILVFPSGKGSTVGSYVLYELKKNGTAPAAIIF 62 (82)
T ss_dssp -TTSEEEES--S--SS-TTHHHHHHHHT-S-SEEEE
T ss_pred ccCeEEEecCCCCccHHHHHHHHHHHCCCCCeEEEE
Confidence 478899999998776544444555555554444443
No 411
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=20.74 E-value=1.4e+02 Score=25.97 Aligned_cols=47 Identities=32% Similarity=0.480 Sum_probs=0.0
Q ss_pred eEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecC--ccchhHH-HHHHHHHHc
Q 028644 114 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD--GYYNSLL-NFIDKAVDD 165 (206)
Q Consensus 114 ~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~--g~w~~l~-~~l~~~~~~ 165 (206)
+|+.-||=||+-....... ..++||+-.|.+ ||+.++. +-+++.+++
T Consensus 58 ~ivvlGGDGtlL~~~~~~~-----~~~~pilgin~G~lGFLt~~~~~~~~~~~~~ 107 (281)
T COG0061 58 LIVVLGGDGTLLRAARLLA-----RLDIPVLGINLGHLGFLTDFEPDELEKALDA 107 (281)
T ss_pred EEEEeCCcHHHHHHHHHhc-----cCCCCEEEEeCCCcccccccCHHHHHHHHHH
No 412
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=20.72 E-value=3.2e+02 Score=24.17 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=40.0
Q ss_pred HHHhhCCeeEEe---cCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 028644 106 EMARNSDCFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNA 182 (206)
Q Consensus 106 ~m~~~sDa~Ivl---pGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ 182 (206)
..+..||++|+- ..|++ .=+.|+++ .++|||..+.. . +.+ .. ....-+.+.+|+
T Consensus 293 ~~~~~adv~v~Ps~~~eG~~--~~~lEAma------~G~PVV~t~~~-~-~~i------------~~-~~~~g~lv~~~~ 349 (397)
T TIGR03087 293 PYLAHAAVAVAPLRIARGIQ--NKVLEAMA------MAKPVVASPEA-A-EGI------------DA-LPGAELLVAADP 349 (397)
T ss_pred HHHHhCCEEEecccccCCcc--cHHHHHHH------cCCCEEecCcc-c-ccc------------cc-cCCcceEeCCCH
Confidence 356889998752 23444 34677774 78999986532 1 111 11 111224456899
Q ss_pred HHHHHHhHhccC
Q 028644 183 KELVQKLEVGFL 194 (206)
Q Consensus 183 ee~~~~l~~~~~ 194 (206)
+++.+.|.+...
T Consensus 350 ~~la~ai~~ll~ 361 (397)
T TIGR03087 350 ADFAAAILALLA 361 (397)
T ss_pred HHHHHHHHHHHc
Confidence 999999987653
No 413
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=20.66 E-value=5.9e+02 Score=22.47 Aligned_cols=88 Identities=20% Similarity=0.268 Sum_probs=53.5
Q ss_pred HHHHhhCCeeEEe--------cCCcCcHHHHHHHHHHHHhCCCCccEEEEe----cCccchhHHHHHHHHHHcCCCCccc
Q 028644 105 AEMARNSDCFIAL--------PGGYGTLEELLEVITWAQLGIHDKPVGLIN----VDGYYNSLLNFIDKAVDDGFISPSQ 172 (206)
Q Consensus 105 ~~m~~~sDa~Ivl--------pGG~GTL~El~~~~~~~~~g~~~kPiill~----~~g~w~~l~~~l~~~~~~gfi~~~~ 172 (206)
..++..+..+|++ |+..||.+++-+...- .+....+.+-|. .. -=+...+|++++....-..+..
T Consensus 112 ~~i~~~~kv~v~f~D~~Q~i~~~e~~~~~~l~~~~~~--~~~~~~~~~~L~~q~R~~-~~~~~~~wI~~ll~~~~~~~~~ 188 (352)
T PF09848_consen 112 DEIIKRAKVVVFFYDENQSIRPSEIGTLENLEEIAEN--LGIEVRHFFELKTQFRCH-GSKEYIDWIDNLLDNKNISPKP 188 (352)
T ss_pred HHHHhcCCEEEEEEccccEeecccCCCHHHHHHHHHh--cCCccccCcCcCcceecC-CCHHHHHHHHHHHhccccCccc
Confidence 3456668877765 6778888876554432 121112221222 21 1257888998887665554432
Q ss_pred c----C-cEEEcCCHHHHHHHhHhccCC
Q 028644 173 R----S-ILVSAPNAKELVQKLEVGFLF 195 (206)
Q Consensus 173 ~----~-~i~~~~~~ee~~~~l~~~~~~ 195 (206)
. + .+.+++|++++.+.|++....
T Consensus 189 ~~~~~~yd~~~f~~~~~~~~~i~~k~~~ 216 (352)
T PF09848_consen 189 FNPDENYDFRVFDSPEEMKEAIKEKNKE 216 (352)
T ss_pred cccCCceeEEEECCHHHHHHHHHHHhcc
Confidence 2 2 488999999999999876543
No 414
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=20.62 E-value=1.2e+02 Score=24.98 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=20.2
Q ss_pred CeEEEcCCccChhHHHHHHHHhcCCeEEEEeCCc
Q 028644 47 LDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPKT 80 (206)
Q Consensus 47 ~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~ 80 (206)
..+|-|||..| ..-++..++.|..++-|-|+.
T Consensus 11 ~vlVvGgG~va--~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 11 AVLVVGGGDVA--LRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred eEEEECcCHHH--HHHHHHHHHCCCEEEEEcCCC
Confidence 45677887644 333456667788877666654
No 415
>PRK08303 short chain dehydrogenase; Provisional
Probab=20.54 E-value=1.4e+02 Score=25.91 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGG 54 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg 54 (206)
+++-|.|+++ + ....+++.|++.|+.|+.-+.
T Consensus 9 k~~lITGgs~-G-------IG~aia~~la~~G~~Vv~~~r 40 (305)
T PRK08303 9 KVALVAGATR-G-------AGRGIAVELGAAGATVYVTGR 40 (305)
T ss_pred CEEEEeCCCc-h-------HHHHHHHHHHHCCCEEEEEec
Confidence 4566665554 2 235667777788888765443
No 416
>PRK00536 speE spermidine synthase; Provisional
Probab=20.49 E-value=4e+02 Score=23.14 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=22.6
Q ss_pred CeeEEecCC-cCcHHHHHHHHHHHHhCCCCccEEEEecCc
Q 028644 112 DCFIALPGG-YGTLEELLEVITWAQLGIHDKPVGLINVDG 150 (206)
Q Consensus 112 Da~IvlpGG-~GTL~El~~~~~~~~~g~~~kPiill~~~g 150 (206)
.=+++++|| -||+-|+. +|+.-|.+++.|+
T Consensus 74 k~VLIiGGGDGg~~REvL---------kh~~~v~mVeID~ 104 (262)
T PRK00536 74 KEVLIVDGFDLELAHQLF---------KYDTHVDFVQADE 104 (262)
T ss_pred CeEEEEcCCchHHHHHHH---------CcCCeeEEEECCH
Confidence 457888888 58888885 6766788888764
No 417
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=20.48 E-value=3.9e+02 Score=26.42 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=26.2
Q ss_pred hCCeeEEecCCcCcHHHHHHHHHHHH-h-CCCCccEEEEecCccc
Q 028644 110 NSDCFIALPGGYGTLEELLEVITWAQ-L-GIHDKPVGLINVDGYY 152 (206)
Q Consensus 110 ~sDa~IvlpGG~GTL~El~~~~~~~~-~-g~~~kPiill~~~g~w 152 (206)
..-++|+|+||. |...++..+.-.. - +..-+-|.+++.+-+|
T Consensus 58 ~~~~~laLsGGs-TP~~~Y~~L~~~~~~~~l~w~~V~~F~~DEr~ 101 (652)
T PRK02122 58 GKPCVLGLATGS-SPIGVYAELIRMHREEGLSFKNVITFNLDEYY 101 (652)
T ss_pred CCCEEEEEcCCc-CHHHHHHHHHhhhhccCCCchheEEEeCeecc
Confidence 346899999994 3333444443221 1 2334788889988888
No 418
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=20.34 E-value=1.3e+02 Score=25.33 Aligned_cols=12 Identities=33% Similarity=0.966 Sum_probs=9.1
Q ss_pred eEEecCCcCcHH
Q 028644 114 FIALPGGYGTLE 125 (206)
Q Consensus 114 ~IvlpGG~GTL~ 125 (206)
.|++|||.|..+
T Consensus 85 alviPGG~~~~~ 96 (213)
T cd03133 85 ALIFPGGFGAAK 96 (213)
T ss_pred EEEECCCCchhh
Confidence 567999998743
No 419
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=20.27 E-value=3.9e+02 Score=20.20 Aligned_cols=8 Identities=25% Similarity=0.538 Sum_probs=3.2
Q ss_pred CCeeEEec
Q 028644 111 SDCFIALP 118 (206)
Q Consensus 111 sDa~Ivlp 118 (206)
+|++|||+
T Consensus 2 aD~ivVlG 9 (155)
T PF02698_consen 2 ADAIVVLG 9 (155)
T ss_dssp -SEEEEES
T ss_pred CcEEEECC
Confidence 34444444
No 420
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=20.25 E-value=5.3e+02 Score=24.42 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=0.0
Q ss_pred eeeccCCHHHHHHHHHhhCCe--eEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHHHHHHHHHcCCCCc
Q 028644 93 EVKPVADMHQRKAEMARNSDC--FIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISP 170 (206)
Q Consensus 93 ~~~~~~~~~~Rk~~m~~~sDa--~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~ 170 (206)
+++.+++-..-|.+.-+...- +|++.||=||+.|+..-+--.+ ...-||.++ ..||-.-... +
T Consensus 96 ~Ivktd~~gqak~l~e~~~t~~Dii~VaGGDGT~~eVVTGi~Rrr--~~~~pv~~~-P~G~~~l~~~------------s 160 (535)
T KOG4435|consen 96 DIVKTDNQGQAKALAEAVDTQEDIIYVAGGDGTIGEVVTGIFRRR--KAQLPVGFY-PGGYDNLWLK------------S 160 (535)
T ss_pred EEEecCcHHHHHHHHHHhccCCCeEEEecCCCcHHHhhHHHHhcc--cccCceeec-cCccchHhhh------------h
Q ss_pred cccCcEEEcCCHHHHHHHhHhccCCccceeeccccC
Q 028644 171 SQRSILVSAPNAKELVQKLEVGFLFVSRICFRFKYL 206 (206)
Q Consensus 171 ~~~~~i~~~~~~ee~~~~l~~~~~~~~~~~~~~~~~ 206 (206)
...+.+.-.|++.-+-+..........+--++|.-+
T Consensus 161 ~l~~vfe~~d~V~h~~~a~~avikde~ksv~~fdv~ 196 (535)
T KOG4435|consen 161 MLPSVFENSDDVRHACEAAMAVIKDEKKSVYAFDVT 196 (535)
T ss_pred hchhhhccchHHHHHHHHHHHHhcccccceEEEEec
No 421
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=20.24 E-value=2.6e+02 Score=24.25 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=0.0
Q ss_pred ccCCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHH
Q 028644 10 AMSRFKRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSH 64 (206)
Q Consensus 10 ~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ 64 (206)
|.+...+|+++-|++.+ ..+..++.|++.|+.||-.|.+.=--+++++
T Consensus 1 m~~~~~kv~lITGASSG-------iG~A~A~~l~~~G~~vvl~aRR~drL~~la~ 48 (246)
T COG4221 1 MTTLKGKVALITGASSG-------IGEATARALAEAGAKVVLAARREERLEALAD 48 (246)
T ss_pred CCCCCCcEEEEecCcch-------HHHHHHHHHHHCCCeEEEEeccHHHHHHHHH
No 422
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=20.24 E-value=95 Score=27.77 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=19.8
Q ss_pred eEEEcCCccChhHHHHHHHHhcCCeEEEEe
Q 028644 48 DLVYGGGSVGLMGLVSHVVHRGGGHVLGII 77 (206)
Q Consensus 48 ~lv~GGg~~GlM~a~~~ga~~~gG~viGv~ 77 (206)
.||-|||..|++.|+ .|.++|-+|+-|-
T Consensus 2 VvVIG~G~AGl~AA~--~Aae~G~~V~lve 29 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAI--EAAEAGAKVLLVE 29 (417)
T ss_dssp EEEE-SSHHHHHHHH--HHHHTTT-EEEEE
T ss_pred EEEECCCHHHHHHHH--HHhhhcCeEEEEE
Confidence 478899988888665 4667888888884
No 423
>PRK05713 hypothetical protein; Provisional
Probab=20.18 E-value=2.1e+02 Score=24.87 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=32.5
Q ss_pred CccEEEEecCccchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHHH
Q 028644 140 DKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELV 186 (206)
Q Consensus 140 ~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~ 186 (206)
.+|++++.++--..|++.+++++.+++ +.+....++.+.+.+++.
T Consensus 192 ~~~~vlIAgGtGiaP~~s~l~~~~~~~--~~~~v~l~~g~r~~~d~~ 236 (312)
T PRK05713 192 ERPLWLLAAGTGLAPLWGILREALRQG--HQGPIRLLHLARDSAGHY 236 (312)
T ss_pred CCcEEEEecCcChhHHHHHHHHHHhcC--CCCcEEEEEEcCchHHhh
Confidence 478888876657889999988877654 223456778888887764
No 424
>PRK05723 flavodoxin; Provisional
Probab=20.16 E-value=2.1e+02 Score=22.46 Aligned_cols=35 Identities=6% Similarity=0.024 Sum_probs=16.8
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 028644 16 RVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLV 50 (206)
Q Consensus 16 ~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv 50 (206)
+++|||-....-.+.|...++.+=+.|++.|-.-|
T Consensus 86 ~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv 120 (151)
T PRK05723 86 PGAVIALGDSSYGDTFCGGGEQMRELFAELGVREV 120 (151)
T ss_pred EEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEe
Confidence 55555433222124455555555555555544433
No 425
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=20.15 E-value=6.2e+02 Score=22.50 Aligned_cols=31 Identities=23% Similarity=0.077 Sum_probs=19.4
Q ss_pred CeEEEcCCccChhHHHHHHHHhcCCeEEEEeCC
Q 028644 47 LDLVYGGGSVGLMGLVSHVVHRGGGHVLGIIPK 79 (206)
Q Consensus 47 ~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~ 79 (206)
..+|.|+|+.|++ +..-|+..|.+++.+.+.
T Consensus 181 ~VlV~G~G~vG~~--avq~Ak~~Ga~Vi~~~~~ 211 (375)
T PLN02178 181 RLGVNGLGGLGHI--AVKIGKAFGLRVTVISRS 211 (375)
T ss_pred EEEEEcccHHHHH--HHHHHHHcCCeEEEEeCC
Confidence 3456665544443 566777788888887543
No 426
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=20.06 E-value=3.8e+02 Score=26.76 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=34.7
Q ss_pred CChHHHHHHHHHHHHHHH---------------CCC-eEEEcCCccChhHHHHHHHHhcCCeEEEE
Q 028644 27 KRNCYRDAALDLGQELVS---------------KKL-DLVYGGGSVGLMGLVSHVVHRGGGHVLGI 76 (206)
Q Consensus 27 ~~~~~~~~A~~lG~~lA~---------------~g~-~lv~GGg~~GlM~a~~~ga~~~gG~viGv 76 (206)
..+.||..|.++|..--. .++ .|=.++.|+|+|..++... -.|+.++||
T Consensus 11 r~Dk~Y~lAke~GyrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~-pv~slivGv 75 (780)
T KOG1098|consen 11 RLDKYYRLAKELGYRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSM-PVGSLIVGV 75 (780)
T ss_pred cchHHHHHHHHhchhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhC-CCCceEEEe
Confidence 346788999988753211 233 4456788989998888754 478999998
No 427
>PRK09291 short chain dehydrogenase; Provisional
Probab=20.05 E-value=1.6e+02 Score=23.93 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 028644 15 KRVCVFCGSSTGKRNCYRDAALDLGQELVSKKLDLVYGGG 54 (206)
Q Consensus 15 ~~I~Vfggs~~~~~~~~~~~A~~lG~~lA~~g~~lv~GGg 54 (206)
++|-|.|+++. ....+.+.|+++|+.++....
T Consensus 3 ~~vlVtGasg~--------iG~~ia~~l~~~G~~v~~~~r 34 (257)
T PRK09291 3 KTILITGAGSG--------FGREVALRLARKGHNVIAGVQ 34 (257)
T ss_pred CEEEEeCCCCH--------HHHHHHHHHHHCCCEEEEEeC
Confidence 46778876552 345677778888998876554
No 428
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=20.01 E-value=7.8e+02 Score=23.56 Aligned_cols=146 Identities=20% Similarity=0.190 Sum_probs=85.1
Q ss_pred HHHHccCCCceEEEEcCCCCCCCh----------------HHHHHHHHHHHHHHHCCCeEEEcCCccChhHHHHHHHHhc
Q 028644 6 AAAKAMSRFKRVCVFCGSSTGKRN----------------CYRDAALDLGQELVSKKLDLVYGGGSVGLMGLVSHVVHRG 69 (206)
Q Consensus 6 ~~~~~~~~~~~I~Vfggs~~~~~~----------------~~~~~A~~lG~~lA~~g~~lv~GGg~~GlM~a~~~ga~~~ 69 (206)
.+..+.+-..+|+|+|-.+....- .-.+.++..-+.+.+.|+.+|-|++. +++-|.+.
T Consensus 89 al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~G~~~viG~~~------~~~~A~~~ 162 (526)
T TIGR02329 89 ALARARRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRARGIGAVVGAGL------ITDLAEQA 162 (526)
T ss_pred HHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCCEEECChH------HHHHHHHc
Confidence 344555556789999876654211 01245666678888899999998864 56778888
Q ss_pred CCeEEEEeCCccc--------------ccccC------------C-CCCceeeccC-CHH-HHHHH-HHhhCCeeEEecC
Q 028644 70 GGHVLGIIPKTLM--------------NKEIT------------G-ETVGEVKPVA-DMH-QRKAE-MARNSDCFIALPG 119 (206)
Q Consensus 70 gG~viGv~P~~~~--------------~~e~~------------~-~~~~~~~~~~-~~~-~Rk~~-m~~~sDa~IvlpG 119 (206)
|-..|=+...... ..+.. . ..+.+++-.+ .|. .|+.. -+..+|.-|.+-|
T Consensus 163 gl~~ili~s~esi~~a~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~G 242 (526)
T TIGR02329 163 GLHGVFLYSADSVRQAFDDALDVARATRLRQAATLRSATRNQLRTRYRLDDLLGASAPMEQVRALVRLYARSDATVLILG 242 (526)
T ss_pred CCceEEEecHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhccccchhheeeCCHHHHHHHHHHHHHhCCCCcEEEEC
Confidence 8776655432100 00000 0 0011122111 121 22222 3466889999999
Q ss_pred CcCcHHHHHHHHHHHHhCCCCccEEEEecCccchhHHH
Q 028644 120 GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLN 157 (206)
Q Consensus 120 G~GTL~El~~~~~~~~~g~~~kPiill~~~g~w~~l~~ 157 (206)
-.||==|.+.-.-..+....++|.+.+|...+-+.+++
T Consensus 243 E~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lle 280 (526)
T TIGR02329 243 ESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLE 280 (526)
T ss_pred CCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHH
Confidence 99998888755543333456789999998665554433
No 429
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=20.01 E-value=1.4e+02 Score=27.05 Aligned_cols=34 Identities=29% Similarity=0.353 Sum_probs=26.9
Q ss_pred CCeeEEecCCcCcHHHHHHHHHHHHhCCCCccEEEEe
Q 028644 111 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 147 (206)
Q Consensus 111 sDa~IvlpGG~GTL~El~~~~~~~~~g~~~kPiill~ 147 (206)
.|+||++.| .-||+|....+.+.. ..+||||+-+
T Consensus 106 ~~GiVVtHG-TDTme~tA~~Lsl~l--~~~kPVVlTG 139 (349)
T TIGR00520 106 YDGIVITHG-TDTLEETAYFLDLTV--KSDKPVVIVG 139 (349)
T ss_pred CCEEEEeCC-cccHHHHHHHHHHHc--CCCCCEEEEC
Confidence 578888875 899999998887643 2489999974
Done!