BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028645
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1L5Q|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5Q|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5R|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5R|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5S|A Chain A, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L5S|B Chain B, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|A Chain A, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|B Chain B, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
Length = 847
Score = 28.5 bits (62), Expect = 3.0, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 146 LVDQQRQKSLSVFGVLVSPKLRSAQLSFERALE-TLVEIANLHTTMLSMFEQVH 198
L DQ++++ +S+ G++ + + SF R L TLV+ N+ TT F H
Sbjct: 5 LTDQEKRRQISIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAH 58
>pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|2ATI|A Chain A, Glycogen Phosphorylase Inhibitors
pdb|2ATI|B Chain B, Glycogen Phosphorylase Inhibitors
Length = 846
Score = 28.5 bits (62), Expect = 3.0, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 146 LVDQQRQKSLSVFGVLVSPKLRSAQLSFERALE-TLVEIANLHTTMLSMFEQVH 198
L DQ++++ +S+ G++ + + SF R L TLV+ N+ TT F H
Sbjct: 4 LTDQEKRRQISIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAH 57
>pdb|1XOI|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
pdb|1XOI|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
Length = 846
Score = 28.5 bits (62), Expect = 3.1, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 146 LVDQQRQKSLSVFGVLVSPKLRSAQLSFERALE-TLVEIANLHTTMLSMFEQVH 198
L DQ++++ +S+ G++ + + SF R L TLV+ N+ TT F H
Sbjct: 4 LTDQEKRRQISIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAH 57
>pdb|2ZB2|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
pdb|2ZB2|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
Length = 849
Score = 28.5 bits (62), Expect = 3.1, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 146 LVDQQRQKSLSVFGVLVSPKLRSAQLSFERALE-TLVEIANLHTTMLSMFEQVH 198
L DQ++++ +S+ G++ + + SF R L TLV+ N+ TT F H
Sbjct: 7 LTDQEKRRQISIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAH 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.125 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,734,391
Number of Sequences: 62578
Number of extensions: 141164
Number of successful extensions: 220
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 11
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (23.5 bits)