Query 028645
Match_columns 206
No_of_seqs 112 out of 178
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 14:45:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00373 V-type ATP synthase s 98.1 2.1E-05 4.6E-10 66.1 10.3 138 12-201 24-163 (204)
2 PF01813 ATP-synt_D: ATP synth 98.1 1E-05 2.2E-10 67.4 8.3 139 12-201 14-154 (196)
3 TIGR00309 V_ATPase_subD H(+)-t 97.8 0.00032 6.9E-09 59.3 10.8 141 12-201 22-163 (209)
4 COG1394 NtpD Archaeal/vacuolar 97.5 0.0016 3.6E-08 55.2 11.7 136 12-201 23-161 (211)
5 KOG1647 Vacuolar H+-ATPase V1 97.5 0.0038 8.2E-08 53.2 13.4 134 17-202 32-167 (255)
6 PRK02195 V-type ATP synthase s 97.3 0.0059 1.3E-07 51.4 12.6 130 12-201 23-153 (201)
7 PF10642 Tom5: Mitochondrial i 73.4 18 0.00039 23.8 5.8 27 157-184 1-32 (49)
8 PF14038 YqzE: YqzE-like prote 69.4 0.94 2E-05 30.4 -1.0 16 151-167 34-51 (54)
9 PHA01750 hypothetical protein 64.6 19 0.00041 25.2 4.7 26 170-195 29-56 (75)
10 PF08287 DASH_Spc19: Spc19; I 48.9 40 0.00088 27.1 4.9 44 155-198 40-92 (153)
11 PRK12419 riboflavin synthase s 42.8 39 0.00086 27.5 4.0 35 157-191 110-155 (158)
12 KOG3478 Prefoldin subunit 6, K 41.2 84 0.0018 24.3 5.3 45 156-200 56-102 (120)
13 PRK00061 ribH 6,7-dimethyl-8-r 41.2 31 0.00067 27.8 3.2 34 157-190 112-153 (154)
14 PF06150 ChaB: ChaB; InterPro 37.3 1.3E+02 0.0028 20.2 5.4 39 162-200 1-45 (57)
15 cd00890 Prefoldin Prefoldin is 32.9 1.1E+02 0.0024 22.7 5.0 45 155-199 72-119 (129)
16 PF00885 DMRL_synthase: 6,7-di 32.6 26 0.00057 27.8 1.4 37 153-190 100-144 (144)
17 PF05338 DUF717: Protein of un 31.9 68 0.0015 21.6 3.1 38 161-198 2-40 (55)
18 COG5091 SGT1 Suppressor of G2 26.4 96 0.0021 27.9 4.0 42 164-205 93-137 (368)
19 TIGR03504 FimV_Cterm FimV C-te 25.7 45 0.00097 21.2 1.3 14 51-64 2-15 (44)
20 PF04696 Pinin_SDK_memA: pinin 25.4 1.1E+02 0.0024 23.8 3.8 18 156-174 11-28 (131)
21 cd00584 Prefoldin_alpha Prefol 24.5 1.8E+02 0.0039 21.9 4.9 45 155-199 72-119 (129)
22 COG0054 RibH Riboflavin syntha 24.2 74 0.0016 25.8 2.6 35 153-188 109-151 (152)
23 cd02682 MIT_AAA_Arch MIT: doma 23.5 2.6E+02 0.0055 19.9 5.1 20 167-186 23-42 (75)
24 cd07609 BAR_SIP3_fungi The Bin 21.9 2.3E+02 0.005 24.0 5.4 34 165-198 144-178 (214)
25 PRK03947 prefoldin subunit alp 20.9 2.3E+02 0.0051 21.7 4.9 46 153-198 77-125 (140)
26 PF10516 SHNi-TPR: SHNi-TPR; 20.3 1.3E+02 0.0028 18.4 2.7 20 171-190 15-34 (38)
27 PHA01745 hypothetical protein 20.2 1.2E+02 0.0025 27.2 3.3 16 155-170 128-143 (306)
No 1
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=98.15 E-value=2.1e-05 Score=66.09 Aligned_cols=138 Identities=22% Similarity=0.372 Sum_probs=92.9
Q ss_pred cccccchhhchhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhhhhH-hhhcceeeeccccC
Q 028645 12 ENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVH-AAATSLKVSEQDVD 90 (206)
Q Consensus 12 ~~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LARAny~~G~~r~g~d~yD~~y~-~~~~~v~v~~~~~~ 90 (206)
.++..-.+..-|.|+.+++.+++++..++..+...+.+.|+.|+.|++.+|...+.. .... .....|.+...-+-
T Consensus 24 ~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~G~~~~~~----~~~~~~~~~~v~~~~~ni~ 99 (204)
T PRK00373 24 ERGHKLLKDKRDELIMEFFDILDEAKKLREEVEEELEEAYKDFLMARAVEGSLAVEE----AAASPKESLEVDVSSKNIM 99 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH----HHhCCCCCceEEEEeEEEE
Confidence 344455566678999999999999999999999999999999999999998654331 0000 10112222211000
Q ss_pred CCCCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCCCccccccCCCCCcccccccccccccccccCC-CChhHHHH
Q 028645 91 SMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRSA 169 (206)
Q Consensus 91 ~~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~s~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~A 169 (206)
+ -..|.|... . . .....+| ||.+ +|+.+..|
T Consensus 100 G-V~vP~~~~~------~----------------------~----------------~~~~~~~---y~~~~t~~~~d~a 131 (204)
T PRK00373 100 G-VVVPVIELS------V----------------------K----------------RTLPERG---YGFLGTSAELDEA 131 (204)
T ss_pred E-EEeceEEee------c----------------------c----------------cCCccCC---cCcccCCHHHHHH
Confidence 0 000111110 0 0 0001122 5665 79999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028645 170 QLSFERALETLVEIANLHTTMLSMFEQVHKEL 201 (206)
Q Consensus 170 Q~~F~~ale~~velanlq~~i~~~~~~i~~~~ 201 (206)
-..|..+++.++++|+++..+..+..+|+++.
T Consensus 132 ~~~~~~~l~~li~lA~~e~~~~~L~~ei~kT~ 163 (204)
T PRK00373 132 AEKFEELLEKILELAEVEKTIQLLADEIEKTK 163 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999764
No 2
>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the D subunit found in V1 and A1 complexes of V- and A-ATPases, respectively. Subunit D appears to be located in the central stalk, whereas subunits E and G form part of the peripheral stalk connecting V1 and V0. This subunit is the most likely homologue to the gamma subunit of the F1 complex in F-ATPases, which undergoes rotation during ATP hydrolysis and serves an essential function in rotary catalysis [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0042626 ATPase activity, coupled to transmembrane movement of substances, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3A5C_G 3A5D_G 3J0J_G 3AON_A.
Probab=98.15 E-value=1e-05 Score=67.43 Aligned_cols=139 Identities=24% Similarity=0.381 Sum_probs=87.1
Q ss_pred cccccchhhchhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhhhhH-hhhcceeeeccccC
Q 028645 12 ENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVH-AAATSLKVSEQDVD 90 (206)
Q Consensus 12 ~~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LARAny~~G~~r~g~d~yD~~y~-~~~~~v~v~~~~~~ 90 (206)
.++..-.....|.+..+++.++++|..++..+...+.+.|+.|+.|++.+|...+.. .... .....|.+...-+-
T Consensus 14 ~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~----~~~~~~~~~~v~~~~~ni~ 89 (196)
T PF01813_consen 14 KRGHKLLKKKRDALIREFRKLIKEAEELREELEELLKEAYFSLALARMSMGEDFVSS----VAESVPESVEVEVKERNIM 89 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHH----HHTS-S---EEEEEEEEET
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHH----HHhcCCCCcEEEEEEEEEE
Confidence 344455566778999999999999999999999999999999999999988654431 1100 00111222211000
Q ss_pred CCCCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCCCccccccCCCCCcccccccccccccccccCC-CChhHHHH
Q 028645 91 SMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRSA 169 (206)
Q Consensus 91 ~~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~s~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~A 169 (206)
+ -..|.|... ......|..-+|.+ .|+.+-.|
T Consensus 90 G-V~vP~~~~~----------------------------------------------~~~~~~~~~~y~~~~~~~~~d~a 122 (196)
T PF01813_consen 90 G-VRVPVLEVK----------------------------------------------EVRRPFPSPPYGLLGTPPWLDEA 122 (196)
T ss_dssp T-EEEEEEEEE------------------------------------------------GGTTS------TT--HHHHHH
T ss_pred E-EEeceEEee----------------------------------------------ecccccccccCCcccCCHHHHHH
Confidence 0 000111110 00011222334444 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028645 170 QLSFERALETLVEIANLHTTMLSMFEQVHKEL 201 (206)
Q Consensus 170 Q~~F~~ale~~velanlq~~i~~~~~~i~~~~ 201 (206)
...|..+++.++++|+++..+..+..+|+++.
T Consensus 123 ~~~~~~~l~~~i~lA~~e~~~~~L~~ei~kT~ 154 (196)
T PF01813_consen 123 REKFEELLELLIELAELETALRRLAEEIRKTQ 154 (196)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHCHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998653
No 3
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=97.77 E-value=0.00032 Score=59.26 Aligned_cols=141 Identities=21% Similarity=0.307 Sum_probs=91.2
Q ss_pred cccccchhhchhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhhhhHhhhcceeeeccccCC
Q 028645 12 ENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDS 91 (206)
Q Consensus 12 ~~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LARAny~~G~~r~g~d~yD~~y~~~~~~v~v~~~~~~~ 91 (206)
.++..-.+..-|.|+.+++.+++++..++..+...+.+.|+.|+.|++..|...+..-. .....+...|.+...-+-+
T Consensus 22 ~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~--~~v~~~~~~v~~~~~ni~G 99 (209)
T TIGR00309 22 KRGYSLLKLKRDALIMEFRQILERAKDIKNKMEQKLKEAISDLIEAQSVMGPFAVWIAA--LSVVTARFEVDMKSKNIMG 99 (209)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH--hcCCcccceEEEEEEEEee
Confidence 34444556667899999999999999999999999999999999999998864221100 0000000111111100000
Q ss_pred CCCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCCCccccccCCCCCcccccccccccccccccCC-CChhHHHHH
Q 028645 92 MESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRSAQ 170 (206)
Q Consensus 92 ~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~s~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~AQ 170 (206)
-..|.|+.+. . .....+| -+|.+ +|+.+-.|-
T Consensus 100 -V~vP~~~~~~-----------------------------~---------------~~~~~~~--~y~l~~t~~~~d~a~ 132 (209)
T TIGR00309 100 -VVVPVFDSYE-----------------------------I---------------RRKVHER--GYGLLFTSYKVDEAA 132 (209)
T ss_pred -EEcceeEeec-----------------------------c---------------ccCcccc--CcCcccCCHHHHHHH
Confidence 0011111100 0 0000112 25654 899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028645 171 LSFERALETLVEIANLHTTMLSMFEQVHKEL 201 (206)
Q Consensus 171 ~~F~~ale~~velanlq~~i~~~~~~i~~~~ 201 (206)
..|.++++.++++|+++..+..+..+|+++.
T Consensus 133 ~~~~~~l~~li~lA~~e~~~~~L~~eI~~T~ 163 (209)
T TIGR00309 133 EIYEEAVELIVELAEIETTIRLLAEEIEITK 163 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998754
No 4
>COG1394 NtpD Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion]
Probab=97.54 E-value=0.0016 Score=55.21 Aligned_cols=136 Identities=25% Similarity=0.315 Sum_probs=94.5
Q ss_pred cccccchhhchhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhhhhHhhhc-ceeeeccccC
Q 028645 12 ENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAAT-SLKVSEQDVD 90 (206)
Q Consensus 12 ~~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LARAny~~G~~r~g~d~yD~~y~~~~~-~v~v~~~~~~ 90 (206)
+++..-.+..-|.|+.++..++++|..++..+.+.+.+.|.+++-|-+.+|...+- ++..... .+.|+....+
T Consensus 23 ~rg~~lLk~Krd~L~~ef~~i~~~~~~~r~e~~~~~~~a~~~~~~a~~~~g~~~ve------~~~~~~~~~~~v~~~~~n 96 (211)
T COG1394 23 RRGHKLLKLKRDALIMEFRAIVKEAKELREELEKELEEAYESLALASAAEGIDAVE------EIALVQKEKLEVDVDVEN 96 (211)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH------HHHhCCCCCceeeeceee
Confidence 34444455666999999999999999999999999999999999999999876542 1221100 1111110000
Q ss_pred CC-CCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCCCccccccCCCCCccccccccccccccccc-CCCChhHHH
Q 028645 91 SM-ESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQRQKSLSVFG-VLVSPKLRS 168 (206)
Q Consensus 91 ~~-~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~s~~~~~~~~~~~~~~~DPL~wFG-~LvP~sLR~ 168 (206)
=+ -..|.|.. .....|..=|| +-+|+.|=.
T Consensus 97 I~GV~vP~~~~------------------------------------------------~~~~~~~~~~~~~~t~~~ld~ 128 (211)
T COG1394 97 IMGVVVPTFEL------------------------------------------------VELTPPPYDLGILSTSAWLDE 128 (211)
T ss_pred eeeeeeeeeee------------------------------------------------eccCCCcccccccCCcHHHHH
Confidence 00 00011110 11234555677 339999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028645 169 AQLSFERALETLVEIANLHTTMLSMFEQVHKEL 201 (206)
Q Consensus 169 AQ~~F~~ale~~velanlq~~i~~~~~~i~~~~ 201 (206)
|=..|..+|+.+|++|.++..+.-+..+|+++-
T Consensus 129 a~~~~~elle~li~lae~e~~~~~L~~Ei~~T~ 161 (211)
T COG1394 129 AIEKFEELLEKLIELAELETTLRLLLEEIRKTK 161 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998654
No 5
>KOG1647 consensus Vacuolar H+-ATPase V1 sector, subunit D [Energy production and conversion]
Probab=97.51 E-value=0.0038 Score=53.19 Aligned_cols=134 Identities=19% Similarity=0.241 Sum_probs=86.8
Q ss_pred chhhchhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhhhhHhhh--cceeeeccccCCCCC
Q 028645 17 RQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAA--TSLKVSEQDVDSMES 94 (206)
Q Consensus 17 ~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LARAny~~G~~r~g~d~yD~~y~~~~--~~v~v~~~~~~~~~~ 94 (206)
-++-..|.+.++|=+++..|......+...|+..+|.||.|+|.+|+ ++ .+..... .+|.|-... +.
T Consensus 32 LLKrKsdAL~~rfR~i~~~i~~~k~~mg~vMr~AaFslaea~f~~gn--~~-----~~v~q~v~~a~v~vRsk~----en 100 (255)
T KOG1647|consen 32 LLKRKSDALTVRFREILKKIVEAKMLMGEVMREAAFSLAEAKFLGGN--FK-----HQVQQNVKQATVKVRSKK----EN 100 (255)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--cc-----HHHHhhhhhheeeeeeec----cc
Confidence 34455699999999999999999999999999999999999999884 22 2222211 123332211 11
Q ss_pred CCeeEEeeccccCCCCCCCCccCCCchhhhccCCCCCccccccCCCCCcccccccccccccccccCCCChhHHHHHHHHH
Q 028645 95 QPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQRQKSLSVFGVLVSPKLRSAQLSFE 174 (206)
Q Consensus 95 ~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~s~~~~~~~~~~~~~~~DPL~wFG~LvP~sLR~AQ~~F~ 174 (206)
...+.+-...... .....-||.-.|- --+++..|...|.
T Consensus 101 v~GV~Lp~fe~~~----------------------------------------dg~~~~~LtgL~r-gGqqv~~~r~~Y~ 139 (255)
T KOG1647|consen 101 VSGVKLPTFELYQ----------------------------------------DGIDAFPLTGLGR-GGQQVARLRENYT 139 (255)
T ss_pred cceeeechhhhhc----------------------------------------ccCcccccccccc-chHHHHHHHHHHH
Confidence 1111111000000 0001124432211 3489999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028645 175 RALETLVEIANLHTTMLSMFEQVHKELE 202 (206)
Q Consensus 175 ~ale~~velanlq~~i~~~~~~i~~~~~ 202 (206)
+||+.+|++|++|.....+-.-|+.++-
T Consensus 140 kAve~LVelasLqtsf~~Lde~ik~TNr 167 (255)
T KOG1647|consen 140 KAVELLVELASLQTSFRTLDEAIKVTNR 167 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999888777775543
No 6
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=97.33 E-value=0.0059 Score=51.41 Aligned_cols=130 Identities=8% Similarity=0.000 Sum_probs=90.4
Q ss_pred cccccchhhchhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhhhhHhhhcceeeeccccCC
Q 028645 12 ENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDS 91 (206)
Q Consensus 12 ~~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LARAny~~G~~r~g~d~yD~~y~~~~~~v~v~~~~~~~ 91 (206)
.++..-.+..-|.|+..++.+++++..++..+...+...|..|+-|+-.+|..... .. ...|.+...-+=+
T Consensus 23 ~rg~~lLk~KR~~Li~e~~~~~~~~~~lr~~~~~~~~~a~~~l~~a~~~~g~~~~~--------~~-~~~v~~~~~nimG 93 (201)
T PRK02195 23 ERYLPTLKLKKAQLQAEVRRAKAEAAELEQEYQKLRQAIEAWISLFSEPLYFDEDL--------IK-VKKVEKDYENIAG 93 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhc--------CC-cceEEEeeeeEee
Confidence 34444455666889999999999999999999999999999999999888764000 00 0112221100000
Q ss_pred CCCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCCCccccccCCCCCcccccccccccccccccCC-CChhHHHHH
Q 028645 92 MESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRSAQ 170 (206)
Q Consensus 92 ~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~s~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~AQ 170 (206)
-..|.|.. ...+...||.+ +|+.+=.|=
T Consensus 94 -V~vP~~~~--------------------------------------------------~~~~~~~Y~~~~t~~~lD~a~ 122 (201)
T PRK02195 94 -VEVPILDS--------------------------------------------------IEFEIIEYSLLNTPIWVDTGI 122 (201)
T ss_pred -eeeceeee--------------------------------------------------eecCCCCcCCccCCHHHHHHH
Confidence 00011110 00122347777 899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028645 171 LSFERALETLVEIANLHTTMLSMFEQVHKEL 201 (206)
Q Consensus 171 ~~F~~ale~~velanlq~~i~~~~~~i~~~~ 201 (206)
..|..+++.++++|+++..+..+..+|+++.
T Consensus 123 ~~~~~ll~~~i~lAe~E~~l~~L~~ei~kT~ 153 (201)
T PRK02195 123 ELLKELVQLKIEAEVLQERLLLLEEELRKTT 153 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999754
No 7
>PF10642 Tom5: Mitochondrial import receptor subunit or translocase; InterPro: IPR019603 This entry represents a short family of yeast proteins. Tom5 is one of three very small translocases of the mitochondrial outer membrane. Tom5 links mitochondrial preprotein receptors to the general import pore []. Although Tom5 has allegedly been identified in vertebrates this could not be confirmed.
Probab=73.37 E-value=18 Score=23.76 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=19.9
Q ss_pred cccCCCChh-----HHHHHHHHHHHHHHHHHHH
Q 028645 157 VFGVLVSPK-----LRSAQLSFERALETLVEIA 184 (206)
Q Consensus 157 wFG~LvP~s-----LR~AQ~~F~~ale~~vela 184 (206)
|||+ .|+. +|.+|..-...|...+-.|
T Consensus 1 MFgg-~~~qpS~eE~k~~e~~A~~Tvk~a~~~a 32 (49)
T PF10642_consen 1 MFGG-PPPQPSEEEIKAAEAQANFTVKNAAAAA 32 (49)
T ss_pred CCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999 4443 8888888888887776443
No 8
>PF14038 YqzE: YqzE-like protein
Probab=69.42 E-value=0.94 Score=30.43 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=11.9
Q ss_pred ccccc--ccccCCCChhHH
Q 028645 151 RQKSL--SVFGVLVSPKLR 167 (206)
Q Consensus 151 ~~DPL--~wFG~LvP~sLR 167 (206)
.+.|. +|||+ +|.+++
T Consensus 34 ~k~p~~~rWFG~-iP~~~~ 51 (54)
T PF14038_consen 34 EKEPFSYRWFGM-IPYSLS 51 (54)
T ss_pred cCCcHHHHHHhH-HHHHHH
Confidence 45677 99998 677665
No 9
>PHA01750 hypothetical protein
Probab=64.60 E-value=19 Score=25.24 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 028645 170 QLSFERALETLV--EIANLHTTMLSMFE 195 (206)
Q Consensus 170 Q~~F~~ale~~v--elanlq~~i~~~~~ 195 (206)
...|+.|++.+| ||-|++.+|..+-.
T Consensus 29 Kq~lkdAvkeIV~~ELdNL~~ei~~~ki 56 (75)
T PHA01750 29 KQALKDAVKEIVNSELDNLKTEIEELKI 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999 99999999886643
No 10
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=48.86 E-value=40 Score=27.13 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=31.3
Q ss_pred cccccCCCChhHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 028645 155 LSVFGVLVSPKLRSAQLSFERALETLV---------EIANLHTTMLSMFEQVH 198 (206)
Q Consensus 155 L~wFG~LvP~sLR~AQ~~F~~ale~~v---------elanlq~~i~~~~~~i~ 198 (206)
=+.|+.++=+.|+.||.+|..=|+-.| .+.-++++...+..+++
T Consensus 40 ~R~FeLvpe~dl~~Aq~~l~~EI~P~I~~Ll~k~e~~l~kL~Rr~~tL~ak~E 92 (153)
T PF08287_consen 40 TRHFELVPEPDLQAAQQSLRDEIEPQINHLLDKAEKHLEKLQRREETLKAKCE 92 (153)
T ss_pred cCcccccCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999998766555 23445555555555444
No 11
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=42.81 E-value=39 Score=27.48 Aligned_cols=35 Identities=11% Similarity=0.086 Sum_probs=23.5
Q ss_pred cccCCCChhHHHHHHH--H---------HHHHHHHHHHHHHHHHHH
Q 028645 157 VFGVLVSPKLRSAQLS--F---------ERALETLVEIANLHTTML 191 (206)
Q Consensus 157 wFG~LvP~sLR~AQ~~--F---------~~ale~~velanlq~~i~ 191 (206)
-||+|+|..+-||... + ..|...+++++++.++|.
T Consensus 110 ~fGVLT~~~~eqA~~rqa~~Ra~~~nKG~eaA~aalem~~l~~~l~ 155 (158)
T PRK12419 110 FSVVLTPHHFHESEEHHDFFRAHFVVKGAEAAHACADTLLSRERLR 155 (158)
T ss_pred EEEecCCCcHHHHHHHHHHhhcCccccHHHHHHHHHHHHHHHHHhc
Confidence 6999999999976552 1 235555567776666553
No 12
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=41.20 E-value=84 Score=24.27 Aligned_cols=45 Identities=27% Similarity=0.392 Sum_probs=37.8
Q ss_pred ccccC-CCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 028645 156 SVFGV-LVSPKLRSAQLSFERALETLV-EIANLHTTMLSMFEQVHKE 200 (206)
Q Consensus 156 ~wFG~-LvP~sLR~AQ~~F~~ale~~v-elanlq~~i~~~~~~i~~~ 200 (206)
+.||. ||++.|-.|.++-..-|+.|- |+..+.+.|.....+..+.
T Consensus 56 KliGpvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~ 102 (120)
T KOG3478|consen 56 KLIGPVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQ 102 (120)
T ss_pred HHhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56664 799999999999999999998 9998888888777766644
No 13
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=41.20 E-value=31 Score=27.82 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=23.8
Q ss_pred cccCCCChhHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 028645 157 VFGVLVSPKLRSAQLSFE--------RALETLVEIANLHTTM 190 (206)
Q Consensus 157 wFG~LvP~sLR~AQ~~F~--------~ale~~velanlq~~i 190 (206)
-||+|+|....||..... .|...+++++++.++|
T Consensus 112 ~~GVLt~~~~eQa~~R~~~~~~nkG~eaa~aal~m~~l~~~l 153 (154)
T PRK00061 112 GFGVLTTDTIEQAIERAGTKAGNKGAEAALAALEMANLLKQL 153 (154)
T ss_pred EEEecCCCCHHHHHHHhCccccccHHHHHHHHHHHHHHHHhc
Confidence 599999999999985442 3445555666665554
No 14
>PF06150 ChaB: ChaB; InterPro: IPR009317 This family of proteins contain a conserved 60 residue region. This protein is known as ChaB in Escherichia coli and is found next to ChaA, which is a cation transporter protein. ChaB may be regulate ChaA function in some way.; PDB: 1SG7_A.
Probab=37.29 E-value=1.3e+02 Score=20.18 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=23.1
Q ss_pred CChhHH-----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 028645 162 VSPKLR-----SAQLSFERALETLVEIA-NLHTTMLSMFEQVHKE 200 (206)
Q Consensus 162 vP~sLR-----~AQ~~F~~ale~~vela-nlq~~i~~~~~~i~~~ 200 (206)
.|+++| .||..|..+-..+.+.- +-.......-..|+++
T Consensus 1 LP~~vr~~LP~~Aq~if~~afn~a~~~~~de~~A~~vAw~AVk~~ 45 (57)
T PF06150_consen 1 LPSSVREHLPEHAQRIFRKAFNSAWEEYGDEERAHRVAWAAVKRK 45 (57)
T ss_dssp S-HHHHTT--SHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHH
T ss_pred CchHHHhHCCHHHHHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHH
Confidence 377787 89999999998888432 3233333333444443
No 15
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=32.93 E-value=1.1e+02 Score=22.72 Aligned_cols=45 Identities=29% Similarity=0.393 Sum_probs=36.0
Q ss_pred ccccc--CCCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 028645 155 LSVFG--VLVSPKLRSAQLSFERALETLV-EIANLHTTMLSMFEQVHK 199 (206)
Q Consensus 155 L~wFG--~LvP~sLR~AQ~~F~~ale~~v-elanlq~~i~~~~~~i~~ 199 (206)
+.|.| ++|..++-.|...+.+-++.+- ++..+...+..+..++.+
T Consensus 72 ~v~iG~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~ 119 (129)
T cd00890 72 LVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITE 119 (129)
T ss_pred EEEecCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45665 5699999999999999999888 777888777777766653
No 16
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=32.57 E-value=26 Score=27.84 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=28.8
Q ss_pred cccccccCCCChhHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 028645 153 KSLSVFGVLVSPKLRSAQLSFE--------RALETLVEIANLHTTM 190 (206)
Q Consensus 153 DPL~wFG~LvP~sLR~AQ~~F~--------~ale~~velanlq~~i 190 (206)
-|+ .||+|+|.+.-||..... .|...+++++++.++|
T Consensus 100 ~PV-~~gvlt~~~~eqa~~R~~~~~~nkG~eaA~aal~m~~l~~~l 144 (144)
T PF00885_consen 100 IPV-IFGVLTPDTEEQALERAGGKAGNKGREAAEAALEMAKLLRQL 144 (144)
T ss_dssp SEE-EEEEEEESSHHHHHHHCEETTEEHHHHHHHHHHHHHHHHHHH
T ss_pred ccE-EEEecCCCCHHHHHHHhcchhhhhHHHHHHHHHHHHHHHhcC
Confidence 344 699999999999998774 4667777888887765
No 17
>PF05338 DUF717: Protein of unknown function (DUF717); InterPro: IPR008002 This entry is represented by the Human herpesvirus 8, Orf30 protein; it is a family of uncharacterised viral proteins.
Probab=31.89 E-value=68 Score=21.61 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=28.4
Q ss_pred CCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 028645 161 LVSPKLRSAQLSFERALETLV-EIANLHTTMLSMFEQVH 198 (206)
Q Consensus 161 LvP~sLR~AQ~~F~~ale~~v-elanlq~~i~~~~~~i~ 198 (206)
+.+..+-.|++.|.+-++.+| ++++-=+.+.-+.....
T Consensus 2 lse~Df~eC~~FF~rPlp~li~~~a~sl~~l~~~~s~~Q 40 (55)
T PF05338_consen 2 LSENDFEECLKFFSRPLPELIDECAKSLSDLRLVDSQTQ 40 (55)
T ss_pred CcHHHHHHHHHHHcCcHHHHHHHHHHHHhhhhhhcchHH
Confidence 456778899999999999998 77776666665444443
No 18
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=26.38 E-value=96 Score=27.94 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHhhccC
Q 028645 164 PKLRSAQLSFERALETLV--EIANLHTTMLSMFEQVH-KELENTN 205 (206)
Q Consensus 164 ~sLR~AQ~~F~~ale~~v--elanlq~~i~~~~~~i~-~~~~~~~ 205 (206)
-.-..||.+|+.|+.+.+ .|---+.++.+.+.... ++.+.||
T Consensus 93 k~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~~~kkQ~~~Tn 137 (368)
T COG5091 93 KDYELAQSYFKKAKNLYVDDTLPLWEDRLETKLNKKNKKQKDSTN 137 (368)
T ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhHhhHhhccccC
Confidence 455679999999999998 67777888888777665 7788886
No 19
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=25.67 E-value=45 Score=21.17 Aligned_cols=14 Identities=43% Similarity=0.389 Sum_probs=11.7
Q ss_pred HHHHHHhhhhcCCc
Q 028645 51 WLELASARHAMGAS 64 (206)
Q Consensus 51 ~~~LARAny~~G~~ 64 (206)
-++||||.+.||+.
T Consensus 2 kLdLA~ayie~Gd~ 15 (44)
T TIGR03504 2 KLDLARAYIEMGDL 15 (44)
T ss_pred chHHHHHHHHcCCh
Confidence 37999999999963
No 20
>PF04696 Pinin_SDK_memA: pinin/SDK/memA/ protein conserved region; InterPro: IPR006786 This conserved region is located adjacent and C-terminal to a N-terminal pinin/SKD domain IPR006787 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque []. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=25.38 E-value=1.1e+02 Score=23.80 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=14.1
Q ss_pred ccccCCCChhHHHHHHHHH
Q 028645 156 SVFGVLVSPKLRSAQLSFE 174 (206)
Q Consensus 156 ~wFG~LvP~sLR~AQ~~F~ 174 (206)
+|||+|. -.|.+++..-.
T Consensus 11 RmFG~Ll-GTL~kf~~e~~ 28 (131)
T PF04696_consen 11 RMFGGLL-GTLQKFKKEEE 28 (131)
T ss_pred hHHHHHH-HHHHHHHHhHH
Confidence 6999987 58888888533
No 21
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.52 E-value=1.8e+02 Score=21.91 Aligned_cols=45 Identities=22% Similarity=0.376 Sum_probs=34.9
Q ss_pred cccc--cCCCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 028645 155 LSVF--GVLVSPKLRSAQLSFERALETLV-EIANLHTTMLSMFEQVHK 199 (206)
Q Consensus 155 L~wF--G~LvP~sLR~AQ~~F~~ale~~v-elanlq~~i~~~~~~i~~ 199 (206)
+-|. |++|-.++..|...|.+-++.+- .+.+++..+..+..++.+
T Consensus 72 ~v~iG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~ 119 (129)
T cd00584 72 LVDLGTGYYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINT 119 (129)
T ss_pred EEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 45699999999999999998887 677777777777766664
No 22
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=24.17 E-value=74 Score=25.80 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=26.7
Q ss_pred cccccccCCCChhHHHHHHHHH--------HHHHHHHHHHHHHH
Q 028645 153 KSLSVFGVLVSPKLRSAQLSFE--------RALETLVEIANLHT 188 (206)
Q Consensus 153 DPL~wFG~LvP~sLR~AQ~~F~--------~ale~~velanlq~ 188 (206)
-|+ -||+|+|...-||...-. .|...+++++|+.+
T Consensus 109 ~PV-~~GVLt~~~~eqA~~rag~~~gnkG~~Aa~aAlem~~l~~ 151 (152)
T COG0054 109 VPV-TFGVLTTDNIEQAIERAGTKAGNKGAEAAEAALEMANLLK 151 (152)
T ss_pred CCe-EeeecCCCcHHHHHHHhCccccccHHHHHHHHHHHHHHhc
Confidence 344 599999999998876432 67888888888754
No 23
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=23.55 E-value=2.6e+02 Score=19.86 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028645 167 RSAQLSFERALETLVEIANL 186 (206)
Q Consensus 167 R~AQ~~F~~ale~~velanl 186 (206)
..|..+++.|+++++++...
T Consensus 23 ~eAi~~Y~~aIe~L~q~~~~ 42 (75)
T cd02682 23 EDAITNYKKAIEVLSQIVKN 42 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999988877
No 24
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.89 E-value=2.3e+02 Score=24.01 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=27.4
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 028645 165 KLRSAQLSFER-ALETLVEIANLHTTMLSMFEQVH 198 (206)
Q Consensus 165 sLR~AQ~~F~~-ale~~velanlq~~i~~~~~~i~ 198 (206)
.|..++++|.+ +|++++++-.+|..|..++.++-
T Consensus 144 qL~e~Rk~Y~~aSLDyv~qi~~lq~~lDkllv~~~ 178 (214)
T cd07609 144 QLFEARKAYLKASLDLVIAIPQLRLTLDKLLVDII 178 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777765 79999999999999998877654
No 25
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.91 E-value=2.3e+02 Score=21.71 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=34.1
Q ss_pred cccccc--cCCCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 028645 153 KSLSVF--GVLVSPKLRSAQLSFERALETLV-EIANLHTTMLSMFEQVH 198 (206)
Q Consensus 153 DPL~wF--G~LvP~sLR~AQ~~F~~ale~~v-elanlq~~i~~~~~~i~ 198 (206)
+-+-|- |++|..++-.|-..|.+-++.+- .+..++..+..+..++.
T Consensus 77 kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~ 125 (140)
T PRK03947 77 KVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIA 125 (140)
T ss_pred eEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666 45799999999999999888877 66666666666555554
No 26
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=20.34 E-value=1.3e+02 Score=18.38 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028645 171 LSFERALETLVEIANLHTTM 190 (206)
Q Consensus 171 ~~F~~ale~~velanlq~~i 190 (206)
.+|.+|++....+.++|.++
T Consensus 15 e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 15 ENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred ccHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666654
No 27
>PHA01745 hypothetical protein
Probab=20.24 E-value=1.2e+02 Score=27.19 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=12.4
Q ss_pred cccccCCCChhHHHHH
Q 028645 155 LSVFGVLVSPKLRSAQ 170 (206)
Q Consensus 155 L~wFG~LvP~sLR~AQ 170 (206)
.-=||++||+++-.+.
T Consensus 128 ~iAfGG~Vp~s~~~sr 143 (306)
T PHA01745 128 YIAFGGIVASSKLKIL 143 (306)
T ss_pred hhhccccccHHhhhhH
Confidence 5569999999976444
Done!