Query 028645
Match_columns 206
No_of_seqs 112 out of 178
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 00:49:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028645.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028645hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aon_A V-type sodium ATPase su 98.1 2.9E-05 9.9E-10 64.8 10.6 138 14-201 32-171 (217)
2 3a5c_G V-type ATP synthase sub 97.6 3.6E-05 1.2E-09 64.5 4.0 133 15-201 25-158 (223)
3 1c2y_A Protein (lumazine synth 34.3 29 0.00099 27.0 3.1 34 157-190 112-153 (156)
4 1rh4_A Right-handed coiled coi 33.5 68 0.0023 18.2 4.0 21 182-202 14-34 (35)
5 2k19_A Putative piscicolin 126 31.3 20 0.00069 25.9 1.6 41 154-202 3-49 (98)
6 2zrr_A Mundticin KS immunity p 28.6 21 0.00071 26.7 1.3 44 152-203 21-70 (118)
7 3nq4_A 6,7-dimethyl-8-ribityll 27.8 26 0.00089 27.3 1.8 34 157-190 113-154 (156)
8 2i0f_A 6,7-dimethyl-8-ribityll 25.0 43 0.0015 26.0 2.6 34 157-190 114-155 (157)
9 1hqk_A 6,7-dimethyl-8-ribityll 22.0 45 0.0016 25.8 2.2 34 157-190 112-153 (154)
10 1rvv_A Riboflavin synthase; tr 18.1 73 0.0025 24.6 2.6 34 157-190 112-153 (154)
No 1
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=98.06 E-value=2.9e-05 Score=64.77 Aligned_cols=138 Identities=20% Similarity=0.247 Sum_probs=90.0
Q ss_pred cccchhhchhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhhhh-HhhhcceeeeccccCCC
Q 028645 14 GIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKV-HAAATSLKVSEQDVDSM 92 (206)
Q Consensus 14 ~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LARAny~~G~~r~g~d~yD~~y-~~~~~~v~v~~~~~~~~ 92 (206)
+..=.+..-|.|+.+++++++++..++..+...+...|+.|+.|++.+|...+.. ... ......|.+...-+-+
T Consensus 32 G~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~----~~~~~~~~~~v~~~~~nImG- 106 (217)
T 3aon_A 32 GHKLLKDKQDELMRQFILLIRKNNELRQAIEKETQTAMKDFVLAKSTVEEAFIDE----LLALPAENVSISVVEKNIMS- 106 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH----HHTSCSCCCEEEEEEEEETT-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHH----HHhCCCCceEEEEEEEEEEE-
Confidence 3333455568899999999999999999999999999999999999988532210 000 0000112221110000
Q ss_pred CCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCCCccccccCCCCCcccccccccccccccccCC-CChhHHHHHH
Q 028645 93 ESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRSAQL 171 (206)
Q Consensus 93 ~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~s~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~AQ~ 171 (206)
-..|.|.... . . ......| -||.+ .|+.+-.|-.
T Consensus 107 V~vP~~~~~~-----~-----------------------~---------------~~~~~~~--~ygl~~t~~~ld~a~~ 141 (217)
T 3aon_A 107 VKVPLMNFQY-----D-----------------------E---------------TLNETPL--EYGYLHSNAELDRSID 141 (217)
T ss_dssp EEEEEEEEEC-----C-----------------------G---------------GGTTSCC--CCCCTTCCHHHHHHHH
T ss_pred EEeceEEEEe-----c-----------------------c---------------cccCCcC--CcCcccCCHHHHHHHH
Confidence 0011111100 0 0 0001111 25665 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028645 172 SFERALETLVEIANLHTTMLSMFEQVHKEL 201 (206)
Q Consensus 172 ~F~~ale~~velanlq~~i~~~~~~i~~~~ 201 (206)
.|..+++.+|++|+++..+..+-.+|+++.
T Consensus 142 ~~~~~l~~lvelA~le~~~~~L~~eIkkT~ 171 (217)
T 3aon_A 142 GFTQLLPKLLKLAEVEKTCQLMAEEIEKTR 171 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999764
No 2
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=97.62 E-value=3.6e-05 Score=64.50 Aligned_cols=133 Identities=17% Similarity=0.240 Sum_probs=51.5
Q ss_pred ccchhhchhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhhhhHhhhcceeeeccccCCCCC
Q 028645 15 IGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMES 94 (206)
Q Consensus 15 ~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LARAny~~G~~r~g~d~yD~~y~~~~~~v~v~~~~~~~~~~ 94 (206)
..=.+..-|.|+.+++++++++..++..+...+...|+.|+.|++.+|...+..-. ..... ...|.+... +
T Consensus 25 ~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~--~~~~~-~~~v~~~~~------n 95 (223)
T 3a5c_G 25 VDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAALLLAQAFDGPEVVAGAA--LGVPP-LEGVEAEVE------N 95 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH--hcCCC-CeEEEEEEE------E
Confidence 33345556889999999999999999999999999999999999999965443200 00000 011111100 0
Q ss_pred CCeeEEeeccccCCCCCCCCccCCCchhhhccCCCCCccccccCCCCCcccccccccccccccccCC-CChhHHHHHHHH
Q 028645 95 QPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRSAQLSF 173 (206)
Q Consensus 95 ~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~s~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~AQ~~F 173 (206)
..+.. -+.+. . ......| ||.+ +|+.+-.|-..|
T Consensus 96 -----------ImGV~---------vP~~~------------~----------~~~~~~~---ygl~~t~~~ld~a~~~~ 130 (223)
T 3a5c_G 96 -----------VWGSK---------VPRLK------------A----------TFPDGAL---LSPVGTPAYTLEASRAF 130 (223)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------EEEEE---------eceEE------------e----------ccCCCCC---cCcccCCHHHHHHHHHH
Confidence 00000 00000 0 0000012 5665 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028645 174 ERALETLVEIANLHTTMLSMFEQVHKEL 201 (206)
Q Consensus 174 ~~ale~~velanlq~~i~~~~~~i~~~~ 201 (206)
..+++.+|++|+++..+..+-.+|+++.
T Consensus 131 ~~~l~~lvelA~le~~~~~L~~eIkkT~ 158 (223)
T 3a5c_G 131 RRYAEALIRVANTETRLKKIGEEIKKTT 158 (223)
T ss_dssp -CHHHHHHTHHHHHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998754
No 3
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=34.27 E-value=29 Score=27.00 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=25.6
Q ss_pred cccCCCChhHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 028645 157 VFGVLVSPKLRSAQLSF--------ERALETLVEIANLHTTM 190 (206)
Q Consensus 157 wFG~LvP~sLR~AQ~~F--------~~ale~~velanlq~~i 190 (206)
.||+|+|.+.-||-... ..|...+++++++.++|
T Consensus 112 ~~GVLT~~~~eQA~~Rag~~~~nKG~eaA~aAlem~~l~~~l 153 (156)
T 1c2y_A 112 VFGVLTCDNMDQAINRAGGKAGNKGAESALTAIEMASLFEHH 153 (156)
T ss_dssp EEEEECCSSHHHHHHHEEETTEEHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHcCCcccchHHHHHHHHHHHHHHHHHH
Confidence 69999999998887653 24666677888877765
No 4
>1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1
Probab=33.54 E-value=68 Score=18.19 Aligned_cols=21 Identities=14% Similarity=0.482 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 028645 182 EIANLHTTMLSMFEQVHKELE 202 (206)
Q Consensus 182 elanlq~~i~~~~~~i~~~~~ 202 (206)
-+|.++.+|.....+|+++|-
T Consensus 14 llakikaeilaalkkikqeia 34 (35)
T 1rh4_A 14 LLAKIKAEILAALKKIKQEIA 34 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 567888899999999998873
No 5
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=31.32 E-value=20 Score=25.90 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=21.1
Q ss_pred ccccccCCCChhHHHHHHHHHHHHHHHHHHH-HHH-----HHHHHHHHHHHHHhh
Q 028645 154 SLSVFGVLVSPKLRSAQLSFERALETLVEIA-NLH-----TTMLSMFEQVHKELE 202 (206)
Q Consensus 154 PL~wFG~LvP~sLR~AQ~~F~~ale~~vela-nlq-----~~i~~~~~~i~~~~~ 202 (206)
+|+||.|- +..-.+|+..+-+|. +++ ..+..++..++.|++
T Consensus 3 ~lKWfsGG--------~ER~~~Ai~iI~~Ll~~l~~~~~~~~Lk~vL~~Y~~EL~ 49 (98)
T 2k19_A 3 KLKWFSGG--------KERSNQAENIITDLLDDLKTDLDNESLKKVLENYLEELK 49 (98)
T ss_dssp SCCCCSCC--------SCHHHHHHHHHHHHHHHHTTCSSCSSTHHHHHHHHHHHH
T ss_pred CceeccCC--------HHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHh
Confidence 78999442 333455666666443 222 124455555555544
No 6
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=28.60 E-value=21 Score=26.65 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=18.4
Q ss_pred ccccccccCCCChhHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHHhhc
Q 028645 152 QKSLSVFGVLVSPKLRSAQLSFERALETLVEIA-NL-----HTTMLSMFEQVHKELEN 203 (206)
Q Consensus 152 ~DPL~wFG~LvP~sLR~AQ~~F~~ale~~vela-nl-----q~~i~~~~~~i~~~~~~ 203 (206)
--+|+||.+- +..-++|+.+|-+|. ++ ...+..++..++.|++.
T Consensus 21 M~~LKWFsGG--------kER~~~Ai~II~~Ll~~l~~~~~~~~Lk~vL~~Y~~ELk~ 70 (118)
T 2zrr_A 21 MSNLKWFSGG--------DDRRKKAEVIITELLDDLEIDLGNESLRKVLGSYLKKLKN 70 (118)
T ss_dssp ---------C--------CCHHHHHHHHHHHHHHHHCSCSSSHHHHHHHHHHHHHHHH
T ss_pred cccceeccCC--------HHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhc
Confidence 3589999442 334456666666543 22 23466666666666543
No 7
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=27.76 E-value=26 Score=27.29 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=26.5
Q ss_pred cccCCCChhHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 028645 157 VFGVLVSPKLRSAQLSFE--------RALETLVEIANLHTTM 190 (206)
Q Consensus 157 wFG~LvP~sLR~AQ~~F~--------~ale~~velanlq~~i 190 (206)
.||+|+|.+.-||-.... .|...+++++|+.++|
T Consensus 113 ~~GVLT~~~~eQA~~Rag~~~~nKG~eaA~aalem~~l~~~l 154 (156)
T 3nq4_A 113 AFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAI 154 (156)
T ss_dssp EEEEEEESCHHHHHHHBTSTTCBHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHh
Confidence 599999999999987652 4666677888887665
No 8
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=24.95 E-value=43 Score=26.00 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=26.2
Q ss_pred cccCCCChhHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 028645 157 VFGVLVSPKLRSAQLSFE--------RALETLVEIANLHTTM 190 (206)
Q Consensus 157 wFG~LvP~sLR~AQ~~F~--------~ale~~velanlq~~i 190 (206)
.||+|+|.+.-||-.... .|...+++++++.++|
T Consensus 114 ~~GVLT~~~~eQA~~Rag~~~~nkG~eaA~aAlem~~l~~~l 155 (157)
T 2i0f_A 114 GNGILTVENEEQAWVHARREDKDKGGFAARAALTMIGLRKKF 155 (157)
T ss_dssp EEEEEEESSHHHHHHHHCTTTTCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCHHHHHHHhCccccccHHHHHHHHHHHHHHHHHh
Confidence 599999999999987652 3556666888877665
No 9
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=22.05 E-value=45 Score=25.77 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=25.8
Q ss_pred cccCCCChhHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 028645 157 VFGVLVSPKLRSAQLSF--------ERALETLVEIANLHTTM 190 (206)
Q Consensus 157 wFG~LvP~sLR~AQ~~F--------~~ale~~velanlq~~i 190 (206)
.||+|+|.+.-||.... ..|...+++++++.++|
T Consensus 112 ~~GVLT~~~~eQA~~Rag~~~~nkG~eaA~aalem~~l~~~l 153 (154)
T 1hqk_A 112 TFGVITADTLEQAIERAGTKHGNKGWEAALSAIEMANLFKSL 153 (154)
T ss_dssp EEEEEEESSHHHHHHHEEETTEEHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHhcccccchHHHHHHHHHHHHHHHHhc
Confidence 69999999999997654 23566667888877665
No 10
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=18.13 E-value=73 Score=24.60 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=25.7
Q ss_pred cccCCCChhHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 028645 157 VFGVLVSPKLRSAQLSF--------ERALETLVEIANLHTTM 190 (206)
Q Consensus 157 wFG~LvP~sLR~AQ~~F--------~~ale~~velanlq~~i 190 (206)
.||+|+|.+.-||-... ..|...+++++|+.++|
T Consensus 112 ~~GVLT~~~~eQA~~Rag~~~~nkG~eaA~aalem~~l~~~l 153 (154)
T 1rvv_A 112 IFGIVTTENIEQAIERAGTKAGNKGVDCAVSAIEMANLNRSF 153 (154)
T ss_dssp EEEEEEESSHHHHHHTEEETTEEHHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCCHHHHHHHhcccccchHHHHHHHHHHHHHHHHhc
Confidence 69999999999997643 24666677888877664
Done!