Query 028645
Match_columns 206
No_of_seqs 112 out of 178
Neff 6.4
Searched_HMMs 13730
Date Tue Mar 26 00:49:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028645.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028645hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rvv1_ c.16.1.1 (1:) Lumazine 34.0 9.3 0.00067 27.8 2.1 37 153-190 109-153 (154)
2 d1k0ia2 d.16.1.2 (A:174-275) p 33.4 3.8 0.00027 28.2 -0.2 13 153-165 8-22 (102)
3 d1c2ya_ c.16.1.1 (A:) Lumazine 31.4 23 0.0017 25.6 4.0 37 153-190 109-153 (155)
4 d2cvea1 d.14.1.11 (A:2-124) Hy 27.1 20 0.0014 25.1 2.8 27 155-184 90-118 (123)
5 d1nqua_ c.16.1.1 (A:) Lumazine 25.1 25 0.0018 25.4 3.1 39 151-190 107-153 (154)
6 d1di0a_ c.16.1.1 (A:) Lumazine 22.6 9.6 0.0007 27.5 0.3 37 153-190 99-146 (148)
7 d1seza2 d.16.1.5 (A:330-441) P 20.1 15 0.0011 24.8 0.8 15 151-165 17-31 (112)
8 d1vi7a1 d.14.1.11 (A:3-137) Hy 19.2 24 0.0017 25.0 1.9 24 156-182 102-127 (135)
9 d2f66c1 a.2.17.3 (C:142-206) V 15.6 45 0.0033 20.4 2.3 26 19-44 37-62 (65)
10 d1ykha1 a.252.1.2 (A:111-205) 12.8 65 0.0048 21.2 2.7 41 14-54 5-52 (95)
No 1
>d1rvv1_ c.16.1.1 (1:) Lumazine synthase {Bacillus subtilis [TaxId: 1423]}
Probab=33.96 E-value=9.3 Score=27.82 Aligned_cols=37 Identities=19% Similarity=0.375 Sum_probs=28.0
Q ss_pred cccccccCCCChhHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 028645 153 KSLSVFGVLVSPKLRSAQLSF--------ERALETLVEIANLHTTM 190 (206)
Q Consensus 153 DPL~wFG~LvP~sLR~AQ~~F--------~~ale~~velanlq~~i 190 (206)
-|+ -||+|++.+..||.... ..|...+++++++.+++
T Consensus 109 ~PV-~~GILt~~n~~QA~~R~~~~~~nKG~eaA~aal~m~~l~r~l 153 (154)
T d1rvv1_ 109 VPV-IFGIVTTENIEQAIERAGTKAGNKGVDCAVSAIEMANLNRSF 153 (154)
T ss_dssp SCE-EEEEEEESSHHHHHHTEEETTEEHHHHHHHHHHHHHHHHHHT
T ss_pred CCE-EEeecCCCCHHHHHHHhcCcccccHHHHHHHHHHHHHHHhhc
Confidence 455 58999999999998853 23666777888887765
No 2
>d1k0ia2 d.16.1.2 (A:174-275) p-Hydroxybenzoate hydroxylase (PHBH) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=33.39 E-value=3.8 Score=28.18 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=10.0
Q ss_pred cccccccCC--CChh
Q 028645 153 KSLSVFGVL--VSPK 165 (206)
Q Consensus 153 DPL~wFG~L--vP~s 165 (206)
=|.-|||+| +|++
T Consensus 8 YPfgWLGiLaeapP~ 22 (102)
T d1k0ia2 8 YPFGWLGLLADTPPV 22 (102)
T ss_dssp EEEEEEEEEESSCCS
T ss_pred ccchhhhhhhcCCCC
Confidence 488999999 5553
No 3
>d1c2ya_ c.16.1.1 (A:) Lumazine synthase {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=31.44 E-value=23 Score=25.57 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=27.3
Q ss_pred cccccccCCCChhHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 028645 153 KSLSVFGVLVSPKLRSAQLSF--------ERALETLVEIANLHTTM 190 (206)
Q Consensus 153 DPL~wFG~LvP~sLR~AQ~~F--------~~ale~~velanlq~~i 190 (206)
-|+ -||+|+|.+.-||.... ..|...+++++++..++
T Consensus 109 ~PV-~~GILT~~n~~QA~~R~~~~~~nkG~eaa~aal~m~~l~~~~ 153 (155)
T d1c2ya_ 109 VPC-VFGVLTCDNMDQAINRAGGKAGNKGAESALTAIEMASLFEHH 153 (155)
T ss_dssp SCE-EEEEECCSSHHHHHHHEEETTEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCE-EecccCCCCHHHHHHHhccccccHHHHHHHHHHHHHHHHHHh
Confidence 344 59999999999998774 23566677888876654
No 4
>d2cvea1 d.14.1.11 (A:2-124) Hypothetical protein TTHA1053, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=27.08 E-value=20 Score=25.09 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=14.3
Q ss_pred cccccCC-C-ChhHHHHHHHHHHHHHHHHHHH
Q 028645 155 LSVFGVL-V-SPKLRSAQLSFERALETLVEIA 184 (206)
Q Consensus 155 L~wFG~L-v-P~sLR~AQ~~F~~ale~~vela 184 (206)
.||||+. . |.-|- ..|..|...+++-+
T Consensus 90 ~RyFGGi~LG~ggl~---ray~~aa~~al~~a 118 (123)
T d2cvea1 90 VRYFGGVKLGAGGLV---RAYGGVAAEALRRA 118 (123)
T ss_dssp EEECCSSCCHHHHHH---HHHHHHHHHHHHHS
T ss_pred EEeeCCeecCCchHH---HHHHHHHHHHHHHc
Confidence 3999884 2 23342 33555555555443
No 5
>d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId: 63363]}
Probab=25.06 E-value=25 Score=25.35 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=29.1
Q ss_pred cccccccccCCCChhHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q 028645 151 RQKSLSVFGVLVSPKLRSAQLS--------FERALETLVEIANLHTTM 190 (206)
Q Consensus 151 ~~DPL~wFG~LvP~sLR~AQ~~--------F~~ale~~velanlq~~i 190 (206)
..-|+- ||+|++..+-||... =..|...+++++++.++|
T Consensus 107 ~~~Pi~-~GILt~~n~~QA~eR~~~~~~nkG~eaA~aal~mi~l~r~l 153 (154)
T d1nqua_ 107 LRKPIT-FGVITADTLEQAIERAGTKHGNKGWEAALSAIEMANLFKSL 153 (154)
T ss_dssp HTSCEE-EEEEEESSHHHHHHTEEETTEEHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEE-EeecCCCCHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhc
Confidence 345764 999999999999984 334666677888887765
No 6
>d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId: 235]}
Probab=22.59 E-value=9.6 Score=27.54 Aligned_cols=37 Identities=11% Similarity=0.203 Sum_probs=25.1
Q ss_pred cccccccCCCChhHHHHHHHHH--------H---HHHHHHHHHHHHHHH
Q 028645 153 KSLSVFGVLVSPKLRSAQLSFE--------R---ALETLVEIANLHTTM 190 (206)
Q Consensus 153 DPL~wFG~LvP~sLR~AQ~~F~--------~---ale~~velanlq~~i 190 (206)
-|+ -||+|+|....||...-. + |...+++++++.++|
T Consensus 99 ~Pv-~~gVLt~~n~~QA~~R~~~~~~~~~nKG~EaA~aal~mi~~~~~l 146 (148)
T d1di0a_ 99 VPV-LSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRI 146 (148)
T ss_dssp CCE-EEEEECBSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcE-EEEeccCCCHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHh
Confidence 453 689999998888866432 2 455566777776654
No 7
>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=20.06 E-value=15 Score=24.84 Aligned_cols=15 Identities=47% Similarity=0.603 Sum_probs=12.1
Q ss_pred cccccccccCCCChh
Q 028645 151 RQKSLSVFGVLVSPK 165 (206)
Q Consensus 151 ~~DPL~wFG~LvP~s 165 (206)
...|++=||.|||++
T Consensus 17 ~~~~~~GfG~LVP~~ 31 (112)
T d1seza2 17 VKYPLEGFGVLVPSK 31 (112)
T ss_dssp BSSCCCSSEEECCGG
T ss_pred cCCCCCceEEEeCCc
Confidence 446788899999975
No 8
>d1vi7a1 d.14.1.11 (A:3-137) Hypothetical protein YigZ, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=19.17 E-value=24 Score=25.00 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=13.3
Q ss_pred ccccCC--CChhHHHHHHHHHHHHHHHHH
Q 028645 156 SVFGVL--VSPKLRSAQLSFERALETLVE 182 (206)
Q Consensus 156 ~wFG~L--vP~sLR~AQ~~F~~ale~~ve 182 (206)
||||+. =+.-| ...|.+|...+++
T Consensus 102 RyFGGikLG~ggL---~rAY~~aa~~al~ 127 (135)
T d1vi7a1 102 RYYGGILLGTGGL---VKAYGGGVNQALR 127 (135)
T ss_dssp EECCSCCCCHHHH---HHHHHHHHHHHHT
T ss_pred EeeCCEecCCchH---HHHHHHHHHHHHH
Confidence 999883 33444 2335555555553
No 9
>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.61 E-value=45 Score=20.44 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=21.8
Q ss_pred hhchhHHHHHHHhcHHHHHHHHHHHH
Q 028645 19 KQVKDEYLLQFLDSLDGYLTLLDSLS 44 (206)
Q Consensus 19 ~~~~D~lll~~L~lLd~Y~~l~~~L~ 44 (206)
...+|..+-+||++=-+|...|+.|.
T Consensus 37 s~elD~Fi~qYl~~RTeYH~rREKLa 62 (65)
T d2f66c1 37 ADDLDQFIKNYLDIRTQYHLRREKLA 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34589999999999999998888775
No 10
>d1ykha1 a.252.1.2 (A:111-205) RNA polymerase II mediator complex protein MED7 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.82 E-value=65 Score=21.21 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=29.5
Q ss_pred cccchhhchhHHHHHHHhcHH-------HHHHHHHHHHHHHHHHHHHH
Q 028645 14 GIGRQKQVKDEYLLQFLDSLD-------GYLTLLDSLSSTLSQGWLEL 54 (206)
Q Consensus 14 ~~~~~~~~~D~lll~~L~lLd-------~Y~~l~~~L~~~~~~G~~~L 54 (206)
.++..+-...++++.||+|++ .|....+.|...|.+...-|
T Consensus 5 k~~ELkkln~sll~nfleLl~~l~~~P~~~~~kvedl~~LfiN~Hhll 52 (95)
T d1ykha1 5 KIQELRKLLKSLLLNYLELIGVLSINPDMYERKVENIRTILVNIHHLL 52 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSCCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCccchHhhHHHHHHHHHHHHHHH
Confidence 344556677788888888874 67777788888877776555
Done!