Query 028646
Match_columns 206
No_of_seqs 187 out of 554
Neff 3.7
Searched_HMMs 29240
Date Tue Mar 26 00:51:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028646.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028646hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_C HAPE; transcription fac 99.9 1.2E-26 4.3E-31 182.0 7.2 82 33-114 12-119 (119)
2 1n1j_B NF-YC; histone-like PAI 99.8 9.3E-21 3.2E-25 143.5 4.7 69 46-114 2-97 (97)
3 1jfi_A Transcription regulator 99.7 3.3E-18 1.1E-22 130.0 2.1 62 57-118 7-93 (98)
4 2byk_A Chrac-16; nucleosome sl 99.7 1.5E-17 5E-22 134.4 2.5 63 56-118 14-102 (140)
5 2byk_B Chrac-14; nucleosome sl 99.1 1.2E-11 4E-16 98.3 3.0 54 58-111 6-85 (128)
6 1n1j_A NF-YB; histone-like PAI 99.1 4.2E-11 1.5E-15 89.3 3.6 56 58-116 5-86 (93)
7 1b67_A Protein (histone HMFA); 98.2 1.2E-06 4.2E-11 61.3 3.7 40 61-101 2-66 (68)
8 3b0c_W CENP-W, centromere prot 98.2 1.4E-06 4.7E-11 62.9 3.8 41 60-101 3-69 (76)
9 1id3_C Histone H2A.1; nucleoso 98.1 1.6E-06 5.4E-11 69.3 2.7 52 59-110 23-99 (131)
10 1jfi_B DR1 protein, transcript 98.0 2.4E-06 8.3E-11 71.6 3.7 54 57-111 11-90 (179)
11 2nqb_C Histone H2A; nucleosome 98.0 2.4E-06 8.3E-11 67.5 2.9 52 59-110 21-97 (123)
12 1tzy_A Histone H2A-IV; histone 98.0 3.2E-06 1.1E-10 67.4 2.9 52 59-110 23-99 (129)
13 2f8n_G Core histone macro-H2A. 98.0 2.8E-06 9.5E-11 66.9 2.4 52 59-110 20-96 (120)
14 1f66_C Histone H2A.Z; nucleoso 97.9 5.4E-06 1.8E-10 66.0 2.7 52 59-110 25-102 (128)
15 2f8n_K Histone H2A type 1; nuc 97.8 6.4E-06 2.2E-10 67.4 2.8 52 59-110 42-118 (149)
16 2jss_A Chimera of histone H2B. 97.6 3.8E-05 1.3E-09 64.1 3.2 52 59-110 103-180 (192)
17 1ku5_A HPHA, archaeal histon; 97.0 0.00056 1.9E-08 48.1 3.7 41 60-101 5-70 (70)
18 1f1e_A Histone fold protein; a 96.8 0.00083 2.8E-08 55.0 4.0 44 58-102 79-147 (154)
19 3b0c_T CENP-T, centromere prot 96.8 0.00054 1.9E-08 52.9 2.6 52 58-110 4-80 (111)
20 1tzy_D Histone H4-VI; histone- 96.2 0.0037 1.3E-07 47.3 3.8 42 61-103 29-95 (103)
21 2yfw_B Histone H4, H4; cell cy 96.1 0.0035 1.2E-07 47.5 3.0 41 62-103 30-95 (103)
22 2hue_C Histone H4; mini beta s 95.7 0.0064 2.2E-07 44.5 3.1 43 59-102 8-75 (84)
23 1f1e_A Histone fold protein; a 95.6 0.0083 2.8E-07 49.0 3.7 41 60-101 3-69 (154)
24 1id3_B Histone H4; nucleosome 95.3 0.012 4.2E-07 44.7 3.3 42 60-102 27-93 (102)
25 1taf_B TFIID TBP associated fa 79.0 3 0.0001 29.8 4.6 41 59-100 4-69 (70)
26 1bh9_B TAFII28; histone fold, 65.2 4.1 0.00014 30.2 2.7 52 50-101 5-81 (89)
27 1ldd_A APC2WHB, anaphase promo 59.4 6.4 0.00022 28.4 2.8 32 37-73 3-34 (74)
28 3ksy_A SOS-1, SON of sevenless 58.8 7.9 0.00027 38.9 4.2 52 58-109 101-176 (1049)
29 1tzy_B Histone H2B; histone-fo 50.3 12 0.00041 29.7 3.2 17 84-100 84-100 (126)
30 2nqb_D Histone H2B; nucleosome 48.6 13 0.00045 29.4 3.2 17 84-100 81-97 (123)
31 3hi2_B Motility quorum-sensing 48.2 21 0.00073 27.2 4.2 53 58-111 7-61 (101)
32 2hue_B Histone H3; mini beta s 39.1 18 0.00061 26.2 2.4 17 84-100 55-71 (77)
33 2ly8_A Budding yeast chaperone 38.0 15 0.00052 28.8 2.0 22 83-104 93-114 (121)
34 2jss_A Chimera of histone H2B. 36.9 27 0.00091 28.7 3.4 17 84-100 51-67 (192)
35 1taf_A TFIID TBP associated fa 36.5 29 0.00098 24.5 3.1 19 83-101 47-65 (68)
36 3v9r_A MHF1, uncharacterized p 36.0 10 0.00035 28.2 0.7 23 83-105 61-83 (90)
37 4dra_A Centromere protein S; D 31.0 14 0.00047 28.8 0.7 23 83-105 76-98 (113)
38 3b0b_B CENP-S, centromere prot 27.4 17 0.00059 27.8 0.7 28 83-110 68-96 (107)
39 3vh5_A CENP-S; histone fold, c 22.5 27 0.00094 28.1 1.0 29 83-111 68-97 (140)
40 2jxf_A NS4B(40-69), genome pol 22.3 49 0.0017 20.4 1.9 11 38-48 5-15 (30)
41 2l6f_A Focal adhesion kinase 1 27.5 19 0.00065 31.0 0.0 31 83-118 101-131 (215)
No 1
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.93 E-value=1.2e-26 Score=181.98 Aligned_cols=82 Identities=57% Similarity=0.938 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh-cccCCCCCCHHHHHHHHhhCcccchhhh-------------------------hhhc
Q 028646 33 IQQQQQQLQMFWSYQRQEIEQA-NDFKNHQLPLARIKKIMKADEDVRMISA-------------------------EENK 86 (206)
Q Consensus 33 ~~~~qq~L~~FW~~q~~eiE~~-~d~k~~~LPLARIKKIMKsDpDV~mISa-------------------------e~~k 86 (206)
..+.++.|.+||.+++++||.. .|+|++.||+||||||||+||++.+||+ ..+|
T Consensus 12 ~~~~~~~l~~fw~~~~~~~e~~~~d~k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~k 91 (119)
T 4g92_C 12 QGTARDILTTYWQHVINHLESDNHDYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNK 91 (119)
T ss_dssp CTHHHHHHHHHHHHHHHHHTCSCCCSSCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3477899999999999999975 5999999999999999999999999987 3689
Q ss_pred cccccHHHHHHHHhcCCcccchhhccCC
Q 028646 87 RRTLQKNDIAAAITRTDIFDFLVDIVPR 114 (206)
Q Consensus 87 RkTLqy~DIA~AV~~~d~fDFL~DIVP~ 114 (206)
||||+++||+.||++++.||||.|||||
T Consensus 92 rktI~~~di~~Av~~~e~~dFL~DiVPk 119 (119)
T 4g92_C 92 RRTLQRSDIAAALSKSDMFDFLIDIVPR 119 (119)
T ss_dssp CSEECHHHHHHHHTTCGGGGGGTTTCC-
T ss_pred cCccCHHHHHHHHhcCchhhHHHHhCCC
Confidence 9999999999999999999999999996
No 2
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.81 E-value=9.3e-21 Score=143.50 Aligned_cols=69 Identities=70% Similarity=1.016 Sum_probs=50.5
Q ss_pred HHHHHHHh--hcccCCCCCCHHHHHHHHhhCcccchhhh-------------------------hhhccccccHHHHHHH
Q 028646 46 YQRQEIEQ--ANDFKNHQLPLARIKKIMKADEDVRMISA-------------------------EENKRRTLQKNDIAAA 98 (206)
Q Consensus 46 ~q~~eiE~--~~d~k~~~LPLARIKKIMKsDpDV~mISa-------------------------e~~kRkTLqy~DIA~A 98 (206)
++++||++ ..+++.+.||+||||||||.|+++.+||+ +.+|||||+|+||+.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~A 81 (97)
T 1n1j_B 2 SHMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMA 81 (97)
T ss_dssp ------------------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred cHHHHHHhcccCCcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHH
Confidence 46788887 47899999999999999999999999987 3679999999999999
Q ss_pred HhcCCcccchhhccCC
Q 028646 99 ITRTDIFDFLVDIVPR 114 (206)
Q Consensus 99 V~~~d~fDFL~DIVP~ 114 (206)
|++++.|+||.||||+
T Consensus 82 v~~~e~~~FL~divP~ 97 (97)
T 1n1j_B 82 ITKFDQFDFLIDIVPR 97 (97)
T ss_dssp HTTCGGGGGGTTTSCC
T ss_pred HhcCcHHHHHHhhCCC
Confidence 9999999999999996
No 3
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.69 E-value=3.3e-18 Score=129.99 Aligned_cols=62 Identities=23% Similarity=0.255 Sum_probs=35.8
Q ss_pred cCCCCCCHHHHHHHHhhCcccchhhh-------------------------hhhccccccHHHHHHHHhcCCcccchhhc
Q 028646 57 FKNHQLPLARIKKIMKADEDVRMISA-------------------------EENKRRTLQKNDIAAAITRTDIFDFLVDI 111 (206)
Q Consensus 57 ~k~~~LPLARIKKIMKsDpDV~mISa-------------------------e~~kRkTLqy~DIA~AV~~~d~fDFL~DI 111 (206)
-..+.||++|||||||+|+||.+||+ ..+|||||+++||+.||++++.||||.||
T Consensus 7 k~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~di 86 (98)
T 1jfi_A 7 KYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANKAR 86 (98)
T ss_dssp ---CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-----------
T ss_pred ccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHHhc
Confidence 45689999999999999999999987 35799999999999999999999999999
Q ss_pred cCCccch
Q 028646 112 VPRDEIK 118 (206)
Q Consensus 112 VP~~~~k 118 (206)
||++...
T Consensus 87 vp~k~~~ 93 (98)
T 1jfi_A 87 KEAELAA 93 (98)
T ss_dssp -------
T ss_pred CchHhhh
Confidence 9997643
No 4
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.66 E-value=1.5e-17 Score=134.38 Aligned_cols=63 Identities=24% Similarity=0.461 Sum_probs=42.7
Q ss_pred ccCCCCCCHHHHHHHHhhCcccchhhh--------------------------hhhccccccHHHHHHHHhcCCcccchh
Q 028646 56 DFKNHQLPLARIKKIMKADEDVRMISA--------------------------EENKRRTLQKNDIAAAITRTDIFDFLV 109 (206)
Q Consensus 56 d~k~~~LPLARIKKIMKsDpDV~mISa--------------------------e~~kRkTLqy~DIA~AV~~~d~fDFL~ 109 (206)
..+.+.||+||||||||+||+|.+||+ ..+|||||+|+||+.||.+.+.|+||.
T Consensus 14 ~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 14 PTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp ---------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred cccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 356789999999999999999999987 136899999999999999999999999
Q ss_pred hccCCccch
Q 028646 110 DIVPRDEIK 118 (206)
Q Consensus 110 DIVP~~~~k 118 (206)
||||++..-
T Consensus 94 divP~ki~l 102 (140)
T 2byk_A 94 QIVPQKIRV 102 (140)
T ss_dssp TTSCSCC--
T ss_pred ccccchhhH
Confidence 999997643
No 5
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.15 E-value=1.2e-11 Score=98.27 Aligned_cols=54 Identities=24% Similarity=0.401 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHh-hCcccchhhh-------------------------hhhccccccHHHHHHHHhcCCcccchhhc
Q 028646 58 KNHQLPLARIKKIMK-ADEDVRMISA-------------------------EENKRRTLQKNDIAAAITRTDIFDFLVDI 111 (206)
Q Consensus 58 k~~~LPLARIKKIMK-sDpDV~mISa-------------------------e~~kRkTLqy~DIA~AV~~~d~fDFL~DI 111 (206)
..+.||+|||+|||| ++|++.+||. ...+||||+++||..||.+.+.|+||..+
T Consensus 6 ~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~~l 85 (128)
T 2byk_B 6 EDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPSL 85 (128)
T ss_dssp -----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHHHH
T ss_pred ccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHHHH
Confidence 356899999999999 7999999987 36789999999999999999999999855
No 6
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.09 E-value=4.2e-11 Score=89.26 Aligned_cols=56 Identities=27% Similarity=0.429 Sum_probs=48.6
Q ss_pred CCCCCCHHHHHHHHhhC-cccchhhh-------------------------hhhccccccHHHHHHHHhcCCcccchhhc
Q 028646 58 KNHQLPLARIKKIMKAD-EDVRMISA-------------------------EENKRRTLQKNDIAAAITRTDIFDFLVDI 111 (206)
Q Consensus 58 k~~~LPLARIKKIMKsD-pDV~mISa-------------------------e~~kRkTLqy~DIA~AV~~~d~fDFL~DI 111 (206)
..+.||+|||+||||.+ |++.+||+ ...|||||+++||..|++ .++|+.++
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~---~l~F~~~i 81 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS---TLGFDSYV 81 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH---HTTCGGGH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH---HcCcHhhH
Confidence 35789999999999999 99999887 357999999999999997 89999998
Q ss_pred cCCcc
Q 028646 112 VPRDE 116 (206)
Q Consensus 112 VP~~~ 116 (206)
.|.+.
T Consensus 82 ~~~~~ 86 (93)
T 1n1j_A 82 EPLKL 86 (93)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 7
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.17 E-value=1.2e-06 Score=61.31 Aligned_cols=40 Identities=30% Similarity=0.476 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHhhCcccchhhh-------------------------hhhccccccHHHHHHHHhc
Q 028646 61 QLPLARIKKIMKADEDVRMISA-------------------------EENKRRTLQKNDIAAAITR 101 (206)
Q Consensus 61 ~LPLARIKKIMKsDpDV~mISa-------------------------e~~kRkTLqy~DIA~AV~~ 101 (206)
.||+++|+||||.+ ++..||+ ...||+||+++||..|++.
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 59999999999999 6677776 3679999999999999875
No 8
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.16 E-value=1.4e-06 Score=62.91 Aligned_cols=41 Identities=27% Similarity=0.434 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHh-hCcccchhhh-------------------------hhhccccccHHHHHHHHhc
Q 028646 60 HQLPLARIKKIMK-ADEDVRMISA-------------------------EENKRRTLQKNDIAAAITR 101 (206)
Q Consensus 60 ~~LPLARIKKIMK-sDpDV~mISa-------------------------e~~kRkTLqy~DIA~AV~~ 101 (206)
..||+|+|+|||| +.|+++ ||. ..++||||+++||..|++.
T Consensus 3 ~~LP~A~V~rI~K~~~p~~~-is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKPHLR-LAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp -CCCHHHHHHHHHHHCTTCE-ECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCCCCc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4799999999999 778854 444 3679999999999999874
No 9
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.05 E-value=1.6e-06 Score=69.26 Aligned_cols=52 Identities=17% Similarity=0.404 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHHhhCcccchhhh-------------------------hhhccccccHHHHHHHHhcCCcccchhh
Q 028646 59 NHQLPLARIKKIMKADEDVRMISA-------------------------EENKRRTLQKNDIAAAITRTDIFDFLVD 110 (206)
Q Consensus 59 ~~~LPLARIKKIMKsDpDV~mISa-------------------------e~~kRkTLqy~DIA~AV~~~d~fDFL~D 110 (206)
.+.||++||+||||.+.....|++ ..++|++|+.+||..||.+++.|+||..
T Consensus 23 gLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDeEL~~Ll~ 99 (131)
T 1id3_C 23 GLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLG 99 (131)
T ss_dssp TCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCHHHHHHTT
T ss_pred CeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhccHHHHHHhc
Confidence 578999999999999988777776 2578999999999999999999999874
No 10
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.04 E-value=2.4e-06 Score=71.65 Aligned_cols=54 Identities=13% Similarity=0.314 Sum_probs=43.9
Q ss_pred cCCCCCCHHHHHHHHhhC-cccchhhh-------------------------hhhccccccHHHHHHHHhcCCcccchhh
Q 028646 57 FKNHQLPLARIKKIMKAD-EDVRMISA-------------------------EENKRRTLQKNDIAAAITRTDIFDFLVD 110 (206)
Q Consensus 57 ~k~~~LPLARIKKIMKsD-pDV~mISa-------------------------e~~kRkTLqy~DIA~AV~~~d~fDFL~D 110 (206)
...+.||+|+|+||||.. | ..+||. ...+||||+++||..|++..+-.+|+..
T Consensus 11 ~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv~~ 89 (179)
T 1jfi_B 11 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISE 89 (179)
T ss_dssp -CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGHHH
T ss_pred hhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHHHH
Confidence 346789999999999997 5 455554 3578999999999999998888888774
Q ss_pred c
Q 028646 111 I 111 (206)
Q Consensus 111 I 111 (206)
+
T Consensus 90 l 90 (179)
T 1jfi_B 90 V 90 (179)
T ss_dssp H
T ss_pred H
Confidence 3
No 11
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.01 E-value=2.4e-06 Score=67.47 Aligned_cols=52 Identities=19% Similarity=0.414 Sum_probs=46.3
Q ss_pred CCCCCHHHHHHHHhhCcccchhhh-------------------------hhhccccccHHHHHHHHhcCCcccchhh
Q 028646 59 NHQLPLARIKKIMKADEDVRMISA-------------------------EENKRRTLQKNDIAAAITRTDIFDFLVD 110 (206)
Q Consensus 59 ~~~LPLARIKKIMKsDpDV~mISa-------------------------e~~kRkTLqy~DIA~AV~~~d~fDFL~D 110 (206)
.+.||++||+||||.+.....|++ ..++|++|+.+||..||.+++.|+||..
T Consensus 21 gL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~Ll~ 97 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 97 (123)
T ss_dssp TCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred CeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhccHHHHHHhc
Confidence 578999999999999988777776 2578999999999999999999999874
No 12
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=97.97 E-value=3.2e-06 Score=67.37 Aligned_cols=52 Identities=17% Similarity=0.406 Sum_probs=46.3
Q ss_pred CCCCCHHHHHHHHhhCcccchhhh-------------------------hhhccccccHHHHHHHHhcCCcccchhh
Q 028646 59 NHQLPLARIKKIMKADEDVRMISA-------------------------EENKRRTLQKNDIAAAITRTDIFDFLVD 110 (206)
Q Consensus 59 ~~~LPLARIKKIMKsDpDV~mISa-------------------------e~~kRkTLqy~DIA~AV~~~d~fDFL~D 110 (206)
.+.||++||+||||.+.....|++ ..++|++|+.+||..||.+++.|+||..
T Consensus 23 gLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~L~~ 99 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG 99 (129)
T ss_dssp TCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred ceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHHHHhC
Confidence 578999999999999988777776 2468999999999999999999999883
No 13
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=97.96 E-value=2.8e-06 Score=66.90 Aligned_cols=52 Identities=17% Similarity=0.317 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHhhCcccchhhh-------------------------hhhccccccHHHHHHHHhcCCcccchhh
Q 028646 59 NHQLPLARIKKIMKADEDVRMISA-------------------------EENKRRTLQKNDIAAAITRTDIFDFLVD 110 (206)
Q Consensus 59 ~~~LPLARIKKIMKsDpDV~mISa-------------------------e~~kRkTLqy~DIA~AV~~~d~fDFL~D 110 (206)
.+.||++||+||||.+.....|++ ..+||++|+.+||..||.+++.|+||..
T Consensus 20 gLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDeEL~~Ll~ 96 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLK 96 (120)
T ss_dssp TCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred CccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCHHHHHHhC
Confidence 578999999999999877666665 2468999999999999999999999983
No 14
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=97.87 E-value=5.4e-06 Score=65.96 Aligned_cols=52 Identities=21% Similarity=0.380 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHhhCcccc-hhhh-------------------------hhhccccccHHHHHHHHhcCCcccchhh
Q 028646 59 NHQLPLARIKKIMKADEDVR-MISA-------------------------EENKRRTLQKNDIAAAITRTDIFDFLVD 110 (206)
Q Consensus 59 ~~~LPLARIKKIMKsDpDV~-mISa-------------------------e~~kRkTLqy~DIA~AV~~~d~fDFL~D 110 (206)
.+.||++||+|+||.+.... .|++ ..++|++|+.+||..||.+++.|+||.+
T Consensus 25 gLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~nDeEL~~Ll~ 102 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK 102 (128)
T ss_dssp TCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSHHHHHHCC
T ss_pred CccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHhhhhc
Confidence 57899999999999987542 4543 2578999999999999999999999986
No 15
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=97.85 E-value=6.4e-06 Score=67.35 Aligned_cols=52 Identities=17% Similarity=0.399 Sum_probs=46.1
Q ss_pred CCCCCHHHHHHHHhhCcccchhhh-------------------------hhhccccccHHHHHHHHhcCCcccchhh
Q 028646 59 NHQLPLARIKKIMKADEDVRMISA-------------------------EENKRRTLQKNDIAAAITRTDIFDFLVD 110 (206)
Q Consensus 59 ~~~LPLARIKKIMKsDpDV~mISa-------------------------e~~kRkTLqy~DIA~AV~~~d~fDFL~D 110 (206)
.+.||++||+||||.+.....|++ ..++|++|+.+||..||.+++.|++|..
T Consensus 42 gLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~nDeEL~~Ll~ 118 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG 118 (149)
T ss_dssp TCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHTT
T ss_pred CeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccHHHHHHhc
Confidence 588999999999999977777765 2478999999999999999999999874
No 16
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.55 E-value=3.8e-05 Score=64.08 Aligned_cols=52 Identities=23% Similarity=0.379 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHhhCccc-chhhh-------------------------hhhccccccHHHHHHHHhcCCcccchhh
Q 028646 59 NHQLPLARIKKIMKADEDV-RMISA-------------------------EENKRRTLQKNDIAAAITRTDIFDFLVD 110 (206)
Q Consensus 59 ~~~LPLARIKKIMKsDpDV-~mISa-------------------------e~~kRkTLqy~DIA~AV~~~d~fDFL~D 110 (206)
.+.||++||+|+||.+... ..|+. ..+||++|+.+||..||.+++.|++|.+
T Consensus 103 gl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~eL~~L~~ 180 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIR 180 (192)
T ss_dssp SCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSHHHHHHHC
T ss_pred CCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccHHHHHHHh
Confidence 5899999999999998664 24544 2568999999999999999999999986
No 17
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=96.99 E-value=0.00056 Score=48.13 Aligned_cols=41 Identities=24% Similarity=0.482 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHhhCcccchhhh-------------------------hhhccccccHHHHHHHHhc
Q 028646 60 HQLPLARIKKIMKADEDVRMISA-------------------------EENKRRTLQKNDIAAAITR 101 (206)
Q Consensus 60 ~~LPLARIKKIMKsDpDV~mISa-------------------------e~~kRkTLqy~DIA~AV~~ 101 (206)
..||.+.|+||||.. ++..||. +..|||||+.+||.-|++.
T Consensus 5 ~~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 5 GELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CCSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred ccCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 479999999999976 5677765 3579999999999999863
No 18
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=96.84 E-value=0.00083 Score=54.98 Aligned_cols=44 Identities=27% Similarity=0.453 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHhhCcccchhhh-------------------------hhhccccccHHHHHHHHhcC
Q 028646 58 KNHQLPLARIKKIMKADEDVRMISA-------------------------EENKRRTLQKNDIAAAITRT 102 (206)
Q Consensus 58 k~~~LPLARIKKIMKsDpDV~mISa-------------------------e~~kRkTLqy~DIA~AV~~~ 102 (206)
-.+.||+++|.||||.. .+..||. +..+||||+..||..|+++.
T Consensus 79 ~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 79 DGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp CSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 45789999999999999 6777776 36899999999999999753
No 19
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=96.81 E-value=0.00054 Score=52.94 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=39.0
Q ss_pred CCCCCCHHHHHHHHhhCcccchhhh-------------------------hhhccccccHHHHHHHHhcCCcccchhh
Q 028646 58 KNHQLPLARIKKIMKADEDVRMISA-------------------------EENKRRTLQKNDIAAAITRTDIFDFLVD 110 (206)
Q Consensus 58 k~~~LPLARIKKIMKsDpDV~mISa-------------------------e~~kRkTLqy~DIA~AV~~~d~fDFL~D 110 (206)
+...||.+-|+||||-. .+..||. +..+||||+.+||..|+++...+.|..+
T Consensus 4 ~d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~ 80 (111)
T 3b0c_T 4 REPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMP 80 (111)
T ss_dssp ------CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBC
T ss_pred CCCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcccccc
Confidence 45679999999999998 5666665 3579999999999999999888777554
No 20
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=96.21 E-value=0.0037 Score=47.33 Aligned_cols=42 Identities=26% Similarity=0.447 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHhhCcccchhhh-------------------------hhhccccccHHHHHHHHhcCC
Q 028646 61 QLPLARIKKIMKADEDVRMISA-------------------------EENKRRTLQKNDIAAAITRTD 103 (206)
Q Consensus 61 ~LPLARIKKIMKsDpDV~mISa-------------------------e~~kRkTLqy~DIA~AV~~~d 103 (206)
-||.++|++||+.. .|..||. +..+|+||+..||..|+++..
T Consensus 29 gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g 95 (103)
T 1tzy_D 29 GITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 95 (103)
T ss_dssp GSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcC
Confidence 39999999999987 4566665 467999999999999999763
No 21
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=96.07 E-value=0.0035 Score=47.55 Aligned_cols=41 Identities=27% Similarity=0.464 Sum_probs=34.8
Q ss_pred CCHHHHHHHHhhCcccchhhh-------------------------hhhccccccHHHHHHHHhcCC
Q 028646 62 LPLARIKKIMKADEDVRMISA-------------------------EENKRRTLQKNDIAAAITRTD 103 (206)
Q Consensus 62 LPLARIKKIMKsDpDV~mISa-------------------------e~~kRkTLqy~DIA~AV~~~d 103 (206)
||.++|++||+.. .|..||. +..+|+||+..||..|+++..
T Consensus 30 ip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 30 ITKPAIRRLARRG-GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp CCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 9999999999987 4566665 467999999999999998753
No 22
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=95.75 E-value=0.0064 Score=44.46 Aligned_cols=43 Identities=26% Similarity=0.424 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHhhCcccchhhh-------------------------hhhccccccHHHHHHHHhcC
Q 028646 59 NHQLPLARIKKIMKADEDVRMISA-------------------------EENKRRTLQKNDIAAAITRT 102 (206)
Q Consensus 59 ~~~LPLARIKKIMKsDpDV~mISa-------------------------e~~kRkTLqy~DIA~AV~~~ 102 (206)
.+-||.+-|++|||.- .|..||. +..|||||+..||..|+++.
T Consensus 8 ~~~ip~~~I~Riar~~-Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 8 IQGITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp CCSSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3459999999999987 5676765 46799999999999999875
No 23
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=95.61 E-value=0.0083 Score=49.03 Aligned_cols=41 Identities=24% Similarity=0.436 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHhhC-cccchhhh-------------------------hhhccccccHHHHHHHHhc
Q 028646 60 HQLPLARIKKIMKAD-EDVRMISA-------------------------EENKRRTLQKNDIAAAITR 101 (206)
Q Consensus 60 ~~LPLARIKKIMKsD-pDV~mISa-------------------------e~~kRkTLqy~DIA~AV~~ 101 (206)
..||.+-|+||||-. ++ ..||. +..|||||+..||..|+..
T Consensus 3 ~~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~ 69 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADV 69 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred ccCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 469999999999999 77 66765 4689999999999999954
No 24
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=95.27 E-value=0.012 Score=44.72 Aligned_cols=42 Identities=26% Similarity=0.453 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHhhCcccchhhh-------------------------hhhccccccHHHHHHHHhcC
Q 028646 60 HQLPLARIKKIMKADEDVRMISA-------------------------EENKRRTLQKNDIAAAITRT 102 (206)
Q Consensus 60 ~~LPLARIKKIMKsDpDV~mISa-------------------------e~~kRkTLqy~DIA~AV~~~ 102 (206)
.-||.+-|++||+.. .|..||. +..+||||+..||..|+++.
T Consensus 27 ~~ip~~~I~Rlar~~-Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 27 QGITKPAIRRLARRG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp GGSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 349999999999997 5676765 46799999999999999875
No 25
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=78.99 E-value=3 Score=29.82 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHhhCcccchhhh-------------------------hhhccccccHHHHHHHHh
Q 028646 59 NHQLPLARIKKIMKADEDVRMISA-------------------------EENKRRTLQKNDIAAAIT 100 (206)
Q Consensus 59 ~~~LPLARIKKIMKsDpDV~mISa-------------------------e~~kRkTLqy~DIA~AV~ 100 (206)
...||++-||+|.++-- +..+|. .-.||+||+.+||..|++
T Consensus 4 ~s~lp~~~v~~iaes~G-i~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 4 GSSISAESMKVIAESIG-VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp SCCCCHHHHHHHHHHTT-CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 46799999999998741 122221 357999999999999874
No 26
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=65.17 E-value=4.1 Score=30.24 Aligned_cols=52 Identities=19% Similarity=0.376 Sum_probs=36.0
Q ss_pred HHHhhcccCCCCCCHHHHHHHHhhC------cccchh-hh------------------hhhccccccHHHHHHHHhc
Q 028646 50 EIEQANDFKNHQLPLARIKKIMKAD------EDVRMI-SA------------------EENKRRTLQKNDIAAAITR 101 (206)
Q Consensus 50 eiE~~~d~k~~~LPLARIKKIMKsD------pDV~mI-Sa------------------e~~kRkTLqy~DIA~AV~~ 101 (206)
+.+....++-..|+-+.|||||..= ++|.++ +. +.+.+.-|+.+||.+|..+
T Consensus 5 Q~~Rye~~Rrs~f~k~~vKrl~~~~~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rr 81 (89)
T 1bh9_B 5 QLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRR 81 (89)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Confidence 3455666777899999999999852 233222 11 2345678999999999865
No 27
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=59.40 E-value=6.4 Score=28.44 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhh
Q 028646 37 QQQLQMFWSYQRQEIEQANDFKNHQLPLARIKKIMKA 73 (206)
Q Consensus 37 qq~L~~FW~~q~~eiE~~~d~k~~~LPLARIKKIMKs 73 (206)
...++-||.-..-=+.|.. .|||.||..++|.
T Consensus 3 ee~~~v~w~yI~GMLtN~~-----slpl~RIh~mLkm 34 (74)
T 1ldd_A 3 ELTLQRSLPFIEGMLTNLG-----AMKLHKIHSFLKI 34 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----SEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHH
Confidence 4568899998654444442 5999999999996
No 28
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=58.75 E-value=7.9 Score=38.92 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHHhhC--cccchhhh----------------------hhhccccccHHHHHHHHhcCCcccchh
Q 028646 58 KNHQLPLARIKKIMKAD--EDVRMISA----------------------EENKRRTLQKNDIAAAITRTDIFDFLV 109 (206)
Q Consensus 58 k~~~LPLARIKKIMKsD--pDV~mISa----------------------e~~kRkTLqy~DIA~AV~~~d~fDFL~ 109 (206)
..+.||+.||.+.+|-. .-|+.-+. ...|++.|+..||.-||..++.++-|.
T Consensus 101 ~~l~~pv~~~~~~l~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~eL~~l~ 176 (1049)
T 3ksy_A 101 NPLSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMF 176 (1049)
T ss_dssp SSCSSCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCSSHHHHC
T ss_pred CCccccHHHHHHHhhcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCHHHHHHH
Confidence 46889999999999532 23332221 246778899999999999999876554
No 29
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=50.27 E-value=12 Score=29.75 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=15.6
Q ss_pred hhccccccHHHHHHHHh
Q 028646 84 ENKRRTLQKNDIAAAIT 100 (206)
Q Consensus 84 ~~kRkTLqy~DIA~AV~ 100 (206)
-+||+||+-+||..||.
T Consensus 84 ~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 84 YNKRSTITSREIQTAVR 100 (126)
T ss_dssp HTTCSEECHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHH
Confidence 58999999999999986
No 30
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=48.63 E-value=13 Score=29.40 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=15.6
Q ss_pred hhccccccHHHHHHHHh
Q 028646 84 ENKRRTLQKNDIAAAIT 100 (206)
Q Consensus 84 ~~kRkTLqy~DIA~AV~ 100 (206)
-+||+||+-+||..||.
T Consensus 81 ~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 81 YNKRSTITSREIQTAVR 97 (123)
T ss_dssp HTTCCEECHHHHHHHHH
T ss_pred hcCCCcCCHHHHHHHHH
Confidence 58999999999999986
No 31
>3hi2_B Motility quorum-sensing regulator MQSR; toxin-antitoxin system, Zn-binding protein, MQSA, YGIU B3022, B3021, stress response; 2.00A {Escherichia coli k-12}
Probab=48.19 E-value=21 Score=27.23 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHhhCcccchhhh--hhhccccccHHHHHHHHhcCCcccchhhc
Q 028646 58 KNHQLPLARIKKIMKADEDVRMISA--EENKRRTLQKNDIAAAITRTDIFDFLVDI 111 (206)
Q Consensus 58 k~~~LPLARIKKIMKsDpDV~mISa--e~~kRkTLqy~DIA~AV~~~d~fDFL~DI 111 (206)
+...-+|.+||.++.. ..+.+..+ .....--+...|+.++|..-..-+|-.-+
T Consensus 7 rtPhy~L~~ik~l~~~-g~~~~T~sA~~ga~~LG~~~~~m~~vI~~L~~~~FyKSM 61 (101)
T 3hi2_B 7 RTPHTRLSQVKKLVNA-GQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSM 61 (101)
T ss_dssp SSCSSCHHHHHHHHHT-TCEEEEHHHHHHHHHTTCCHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCCCcHHHHHHHHHc-CChHHHHHHHhhHHHhCCCHHHHHHHHHhcCHHHccccc
Confidence 3556899999999998 77777544 34445668999999999999998886543
No 32
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=39.07 E-value=18 Score=26.23 Aligned_cols=17 Identities=35% Similarity=0.346 Sum_probs=14.8
Q ss_pred hhccccccHHHHHHHHh
Q 028646 84 ENKRRTLQKNDIAAAIT 100 (206)
Q Consensus 84 ~~kRkTLqy~DIA~AV~ 100 (206)
-.||+||..+||.-|..
T Consensus 55 HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 55 HAKRVTIMPKDIQLARR 71 (77)
T ss_dssp HTTCSEECHHHHHHHHH
T ss_pred HcCCccCcHhhHHHHHH
Confidence 57999999999998865
No 33
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=38.00 E-value=15 Score=28.76 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=18.9
Q ss_pred hhhccccccHHHHHHHHhcCCc
Q 028646 83 EENKRRTLQKNDIAAAITRTDI 104 (206)
Q Consensus 83 e~~kRkTLqy~DIA~AV~~~d~ 104 (206)
+..+||||+-.||.-|+++...
T Consensus 93 ehA~RKTVta~DV~~Alkr~G~ 114 (121)
T 2ly8_A 93 EHAKRKTVTSLDVVYALKRQGR 114 (121)
T ss_dssp HHTTCCCBCHHHHHHHHHHTTC
T ss_pred HhcCCCcCcHHHHHHHHHhCCC
Confidence 5789999999999999987643
No 34
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=36.94 E-value=27 Score=28.66 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=15.4
Q ss_pred hhccccccHHHHHHHHh
Q 028646 84 ENKRRTLQKNDIAAAIT 100 (206)
Q Consensus 84 ~~kRkTLqy~DIA~AV~ 100 (206)
.+||+||+..||..||.
T Consensus 51 ~~~r~Tit~~eIq~Avr 67 (192)
T 2jss_A 51 YNKKSTISAREIQTAVR 67 (192)
T ss_dssp TTCCCSCCHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHH
Confidence 37899999999999997
No 35
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=36.53 E-value=29 Score=24.48 Aligned_cols=19 Identities=16% Similarity=0.372 Sum_probs=16.3
Q ss_pred hhhccccccHHHHHHHHhc
Q 028646 83 EENKRRTLQKNDIAAAITR 101 (206)
Q Consensus 83 e~~kRkTLqy~DIA~AV~~ 101 (206)
+-.+|+||+.+||.-||+.
T Consensus 47 ~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 47 NHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHTTCSSBCHHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHh
Confidence 3568999999999999975
No 36
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=36.01 E-value=10 Score=28.22 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=20.2
Q ss_pred hhhccccccHHHHHHHHhcCCcc
Q 028646 83 EENKRRTLQKNDIAAAITRTDIF 105 (206)
Q Consensus 83 e~~kRkTLqy~DIA~AV~~~d~f 105 (206)
.-.+|+||+-+||.-++++++.+
T Consensus 61 ~HAgRkTI~~eDV~L~~Rrn~~L 83 (90)
T 3v9r_A 61 RHAGRGVVNKSDLMLYLRKQPDL 83 (90)
T ss_dssp HHTTCSEECHHHHHHHTTTCHHH
T ss_pred HHcCCCccCHHHHHHHHHhChHH
Confidence 45799999999999999998765
No 37
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=31.05 E-value=14 Score=28.81 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=19.9
Q ss_pred hhhccccccHHHHHHHHhcCCcc
Q 028646 83 EENKRRTLQKNDIAAAITRTDIF 105 (206)
Q Consensus 83 e~~kRkTLqy~DIA~AV~~~d~f 105 (206)
.-.+||||+-+||.-++++++.+
T Consensus 76 kHAgRkTI~~eDV~La~Rr~~~L 98 (113)
T 4dra_A 76 RHAKRTTINTEDVKLLARRSNSL 98 (113)
T ss_dssp HHTTCSEECHHHHHHHTTTCHHH
T ss_pred HhcCCCccCHHHHHHHHHhCHHH
Confidence 35789999999999999998654
No 38
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=27.39 E-value=17 Score=27.77 Aligned_cols=28 Identities=18% Similarity=0.434 Sum_probs=21.6
Q ss_pred hhhccccccHHHHHHHHhcCCcc-cchhh
Q 028646 83 EENKRRTLQKNDIAAAITRTDIF-DFLVD 110 (206)
Q Consensus 83 e~~kRkTLqy~DIA~AV~~~d~f-DFL~D 110 (206)
.-.+||||+.+||.-++++++.+ +.|.+
T Consensus 68 ~HAgRkTI~~eDV~La~Rrn~~l~~~l~~ 96 (107)
T 3b0b_B 68 RHAKRSTITSEDVKLLARRSNSLLKYITQ 96 (107)
T ss_dssp HHTTCSEECHHHHHHHTTTCHHHHHHHHH
T ss_pred HhcCcCcCCHHHHHHHHHhCHHHHHHHHH
Confidence 35789999999999999998554 44433
No 39
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=22.53 E-value=27 Score=28.09 Aligned_cols=29 Identities=17% Similarity=0.395 Sum_probs=22.7
Q ss_pred hhhccccccHHHHHHHHhcCCcc-cchhhc
Q 028646 83 EENKRRTLQKNDIAAAITRTDIF-DFLVDI 111 (206)
Q Consensus 83 e~~kRkTLqy~DIA~AV~~~d~f-DFL~DI 111 (206)
.-.+|+||+-+||.-++++++.+ .+|.+.
T Consensus 68 kHAGRKTI~~eDVkLa~Rrn~~L~~~L~~~ 97 (140)
T 3vh5_A 68 RHAKRSTITSEDVKLLARRSNSLLKYITQK 97 (140)
T ss_dssp HHTTCSEECHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHcCCCccCHHHHHHHHHhCHHHHHHHHHH
Confidence 35789999999999999999655 444443
No 40
>2jxf_A NS4B(40-69), genome polyprotein; membrane associated segment, acetylation, apoptosis, ATP- binding, capsid protein, cytoplasm, endoplasmic reticulum; NMR {Synthetic}
Probab=22.28 E-value=49 Score=20.35 Aligned_cols=11 Identities=36% Similarity=0.945 Sum_probs=9.0
Q ss_pred HHHHHHHHHHH
Q 028646 38 QQLQMFWSYQR 48 (206)
Q Consensus 38 q~L~~FW~~q~ 48 (206)
+.|+.||.+.|
T Consensus 5 ~kle~fW~khM 15 (30)
T 2jxf_A 5 QKLEVFWAKHM 15 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56889999876
No 41
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=27.46 E-value=19 Score=30.96 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=15.3
Q ss_pred hhhccccccHHHHHHHHhcCCcccchhhccCCccch
Q 028646 83 EENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIK 118 (206)
Q Consensus 83 e~~kRkTLqy~DIA~AV~~~d~fDFL~DIVP~~~~k 118 (206)
++.+|..|...|+-+.=+++ |.|+|..-..+
T Consensus 101 ~EyRK~MLsaaH~LAmdaKN-----LlDvVD~aRi~ 131 (215)
T 2l6f_A 101 QEYKKQMLTAAHALAVDAKN-----LLDVIDQARLK 131 (215)
Confidence 45555666666655443333 44555444333
Done!