BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028647
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 302 bits (773), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 146/208 (70%), Positives = 172/208 (82%), Gaps = 5/208 (2%)
Query: 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV +DRL T+Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
IWDTAGQERFQSLGVAFYRGADCCVLV+DV + +F L++WR+EFLIQASP DP+NFPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
VVLGNKID++ +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK
Sbjct: 121 VVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Query: 181 EEEEIY--LPDTIDVGNSSQPRSSGCEC 206
E E+Y P+ I + + + ++S C
Sbjct: 178 TEVELYNEFPEPIKLDKNERAKASAESC 205
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 301 bits (770), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 146/208 (70%), Positives = 171/208 (82%), Gaps = 5/208 (2%)
Query: 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV +DRL T+Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
IWDTAGQERFQSLGVAFYRGADCCVLV+DV + +F L++WR+EFLIQASP DP+NFPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
VVLGNKID + +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK
Sbjct: 121 VVLGNKIDFE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Query: 181 EEEEIY--LPDTIDVGNSSQPRSSGCEC 206
E E+Y P+ I + + + ++S C
Sbjct: 178 TEVELYNEFPEPIKLDKNDRAKASAESC 205
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 298 bits (764), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 146/210 (69%), Positives = 172/210 (81%), Gaps = 7/210 (3%)
Query: 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV +DRL T+Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
IWDTAG ERFQSLGVAFYRGADCCVLV+DV + +F L++WR+EFLIQASP DP+NFPF
Sbjct: 61 IWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
VVLGNKID++ +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK
Sbjct: 121 VVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Query: 181 EEEEIY--LPDTIDVGNSSQPRSSG--CEC 206
E E+Y P+ I + + + ++S C C
Sbjct: 178 TEVELYNEFPEPIKLDKNDRAKASAESCSC 207
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 298 bits (763), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 142/186 (76%), Positives = 162/186 (87%), Gaps = 3/186 (1%)
Query: 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV +DRL T+Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
IWDTAGQERFQSLGVAFYRGADCCVLV+DV + +F L++WR+EFLIQASP DP+NFPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
VVLGNKID++ +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK
Sbjct: 121 VVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Query: 181 EEEEIY 186
E E+Y
Sbjct: 178 TEVELY 183
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 243 bits (620), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 115/182 (63%), Positives = 148/182 (81%), Gaps = 2/182 (1%)
Query: 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTL 59
M SR++ +LKVIILGDSGVGKTSLM++YVN K+S QYKATIGADFLTKEV + D++ T+
Sbjct: 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 60 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119
Q+WDTAGQERFQSLGVAFYRGADCCVLVYDV + SF+N+ +WR+EFL+ A+ + P+ FP
Sbjct: 61 QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120
Query: 120 FVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
FV+LGNKID + + ++VSEK A+ S G+IP F TSAK INV+ AF+ IA++AL+
Sbjct: 121 FVILGNKIDAE-ESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179
Query: 180 GE 181
+
Sbjct: 180 NQ 181
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 197 bits (501), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 125/175 (71%), Gaps = 3/175 (1%)
Query: 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
+ +L KVI+LGD GVGK+SLMN+YV KF Q TIG +FL K+++ + T+QIWDT
Sbjct: 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 63
Query: 65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
AGQERF+SL FYRG+DCC+L + V+ +SF NL+NW++EF+ A +P++FPFV+LG
Sbjct: 64 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123
Query: 125 NKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
NKID+ + R VS ++A+AWC G+ PYFETSAK+ NV AF+ + L +
Sbjct: 124 NKIDI---SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 197 bits (501), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 125/175 (71%), Gaps = 3/175 (1%)
Query: 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
+ +L KVI+LGD GVGK+SLMN+YV KF Q TIG +FL K+++ + T+QIWDT
Sbjct: 6 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 65
Query: 65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
AGQERF+SL FYRG+DCC+L + V+ +SF NL+NW++EF+ A +P++FPFV+LG
Sbjct: 66 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 125
Query: 125 NKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
NKID+ + R VS ++A+AWC G+ PYFETSAK+ NV AF+ + L +
Sbjct: 126 NKIDI---SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 177
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 197 bits (500), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 94/182 (51%), Positives = 127/182 (69%), Gaps = 3/182 (1%)
Query: 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
S + LLKVI+LGD GVGK+SLMN+YV KF +Q TIG +FL ++++ + R TLQIW
Sbjct: 2 SGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIW 61
Query: 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
DTAGQERF+SL FYRGADCC+L + V+ +SF+NL NW++EF+ A DP++FPFVV
Sbjct: 62 DTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVV 121
Query: 123 LGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182
LGNK+D + R V+ ++A+ WC G+ PY ETSAK+ NV AF+ + L E+
Sbjct: 122 LGNKVDKE---DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQ 178
Query: 183 EE 184
E
Sbjct: 179 LE 180
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 194 bits (492), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 124/175 (70%), Gaps = 3/175 (1%)
Query: 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
+ +L K+I+LGD GVGK+SLMN+YV KF +Q TIG +FL K+++ + T+QIWDT
Sbjct: 8 KSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 67
Query: 65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
AGQERF+SL FYRG+DCC+L + V+ +SF NL+NW++EF+ A +P++FPFV+LG
Sbjct: 68 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 127
Query: 125 NKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
NK D+ R VS ++A+AWC G+ PYFETSAK+ NV AF+ + L +
Sbjct: 128 NKTDI---KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILAT 179
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 126/216 (58%), Gaps = 23/216 (10%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LF 57
L+K++ LGDSGVGKT+ + +Y + KF+ ++ T+G DF K V ++ +
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
LQ+WDTAG ERF+SL AF+R A +L++D+ S +SF N+ NW + A +PD
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
V++GNK D+ + R V+E++AR A K IPYFETSA G NVE++ + + +
Sbjct: 130 --IVLIGNKADLP--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 178 KSGEE--EEIYLPDTIDVGNSS-----QPRSSGCEC 206
K E+ E+ +PDT++ GNS +P C C
Sbjct: 185 KRMEKCVEKTQVPDTVNGGNSGKLDGEKPAEKKCAC 220
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 136 bits (343), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 120/199 (60%), Gaps = 18/199 (9%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LF 57
L+K++ LGDSGVGKT+ + +Y + KF+ ++ T+G DF K V + +
Sbjct: 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 58 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
LQ+WDTAGQERF+SL AF+R A +L++D+ S +SF N+ NW + A +PD
Sbjct: 85 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD- 143
Query: 118 FPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
V++GNK D+ + R V+E++AR A K IPYFETSA G NVE+A + + +
Sbjct: 144 --IVLIGNKADLP--DQREVNERQARE-LADKYGIPYFETSAATGQNVEKAVETLLDLIM 198
Query: 178 KSGEE--EEIYLPDTIDVG 194
K E+ E+ +PDT++ G
Sbjct: 199 KRMEQCVEKTQIPDTVNGG 217
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 118/196 (60%), Gaps = 18/196 (9%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LF 57
L+K++ LGDSGVGKT+ + +Y + KF+ ++ T+G DF K V ++ +
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
LQ+WDTAG ERF+SL AF+R A +L++D+ S +SF N+ NW + A +PD
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
V++GNK D+ + R V+E++AR A K IPYFETSA G NVE++ + + +
Sbjct: 130 --IVLIGNKADLP--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 178 KSGEE--EEIYLPDTI 191
K E+ E+ +PDT+
Sbjct: 185 KRMEKCVEKTQVPDTV 200
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 118/199 (59%), Gaps = 18/199 (9%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LF 57
L+K++ LGDSGVGKT+ + +Y + KF+ ++ T+G DF K V ++ +
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
LQ+WDTAG ERF+SL AF+R A +L +D+ S +SF N+ NW + A +PD
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
V++GNK D+ + R V+E++AR A K IPYFETSA G NVE++ + +
Sbjct: 130 --IVLIGNKADLP--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETLLDLIX 184
Query: 178 KSGEE--EEIYLPDTIDVG 194
K E+ E+ +PDT++ G
Sbjct: 185 KRXEKCVEKTQVPDTVNGG 203
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 103/175 (58%), Gaps = 8/175 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++I+GDSGVGK+SL+ ++ + FS Y TIG DF + V+ LQIWDTAGQ
Sbjct: 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ERF+++ +YRG ++VYDV S +SF N+ W E + D+ +++GNK
Sbjct: 69 ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-----NQNCDDVCRILVGNK- 122
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182
D +VV + A + G I FETSAKE +NVEE F CI + L++ ++
Sbjct: 123 -NDDPERKVVETEDAYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVLRAKKD 175
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK+ L+ ++ + +++ Y +TIG DF + + E++ LQIWDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ERF+++ ++YRGA ++VYDV SFDN+ W +E A +N +++GNK
Sbjct: 69 ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYA----MENVNKLLVGNKC 124
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
D+ + RVV+ + R S G I + ETSAK NVE+AF +A
Sbjct: 125 DL--VSKRVVTSDEGRELADSHG-IKFIETSAKNAYNVEQAFHTMA 167
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 130 bits (326), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 106/168 (63%), Gaps = 7/168 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGKT ++ ++ F++ + +TIG DF + ++ + + LQIWDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ERF+++ A+YRGA +LVYD+ + KSFDN+ NW AS + ++LGNK
Sbjct: 66 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKC 121
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
DV+ + R VS+++ G I + ETSAK INVE AF +A++
Sbjct: 122 DVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARD 166
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 129 bits (325), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 106/165 (64%), Gaps = 7/165 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ +Q + + QIWDTAGQ
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ER++ + A+YRGA +LVYD+ +++N+ W +E A N +++GNK
Sbjct: 65 ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 120
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 172
D+ + R V +ARA+ A K N+ + ETSA + NVEEAF+ I
Sbjct: 121 DL--RHLRAVPTDEARAF-AEKNNLSFIETSALDSTNVEEAFKNI 162
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 129 bits (325), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 106/168 (63%), Gaps = 7/168 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGKT ++ ++ F++ + +TIG DF + ++ + + LQIWDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ERF+++ A+YRGA +LVYD+ + KSFDN+ NW AS + ++LGNK
Sbjct: 68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKC 123
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
DV+ + R VS+++ G I + ETSAK INVE AF +A++
Sbjct: 124 DVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARD 168
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 105/166 (63%), Gaps = 7/166 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQ
Sbjct: 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ERF+++ ++YRGA ++VYDV +SF+N+ W +E AS +N +++GNK
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 131
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
D+ +VV A+ + S G IP+ ETSAK NVE++F +A
Sbjct: 132 DLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 174
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 105/166 (63%), Gaps = 7/166 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ERF+++ ++YRGA ++VYDV +SF+N+ W +E AS +N +++GNK
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 121
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
D+ +VV A+ + S G IP+ ETSAK NVE++F +A
Sbjct: 122 DL--TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 164
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 105/166 (63%), Gaps = 7/166 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQ
Sbjct: 25 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ERF+++ ++YRGA ++VYDV +SF+N+ W +E AS +N +++GNK
Sbjct: 85 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 140
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
D+ +VV A+ + S G IP+ ETSAK NVE++F +A
Sbjct: 141 DLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 183
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 104/171 (60%), Gaps = 7/171 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
R+ SL +YRGA ++VYD+ + ++F W +E QASPS + GNK D
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS----IVIALAGNKAD 124
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
+ N R+V ++A+A+ A ++ + ETSAK +NV + F IAK KS
Sbjct: 125 L--ANKRMVEYEEAQAY-ADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKS 172
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 105/166 (63%), Gaps = 7/166 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ERF+++ ++YRGA ++VYDV +SF+N+ W +E AS +N +++GNK
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 121
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
D+ +VV A+ + S G IP+ ETSAK NVE++F +A
Sbjct: 122 DL--TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 164
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 101/166 (60%), Gaps = 7/166 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
R+ SL +YRGA ++VYD+ + +F NW +E QASP N + GNK D
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKAD 119
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+ + R V ++A+A+ A ++ + ETSAK +NV E F IAK
Sbjct: 120 L--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAK 162
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ERF+++ ++YRGA ++VYDV +S+ N+ W +E AS +N +++GNK
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLVGNKS 124
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
D+ +VV A+ + S G IP+ ETSAK NVE+AF +A
Sbjct: 125 DLT--TKKVVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMTMA 167
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQ
Sbjct: 16 LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ERF+++ ++YRGA ++VYDV +SF+N+ W +E AS +N +++GNK
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 131
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
D+ +VV A+ + S G IP+ ETSAK NVE++F +A
Sbjct: 132 DLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 174
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 108/184 (58%), Gaps = 16/184 (8%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------DRLF 57
L+K + LGDSGVGKTS++ QY + KF++++ T+G DF K V + +
Sbjct: 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 58 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
LQ+WDTAG ERF+SL AF+R A +L++D+ + +SF N+ NW + + A +PD
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD- 129
Query: 118 FPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
V+ GNK D++ + R V E++AR A K IPYFETSA G N+ A + + +
Sbjct: 130 --IVLCGNKSDLE--DQRAVKEEEARE-LAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184
Query: 178 KSGE 181
K E
Sbjct: 185 KRME 188
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ERF+++ ++YRGA ++VYDV +S+ N+ W +E AS +N +++GNK
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLVGNKS 124
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
D+ +VV A+ + S G IP+ ETSAK NVE+AF +A
Sbjct: 125 DLT--TKKVVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMTMA 167
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 95/166 (57%), Gaps = 7/166 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
LKV +LGD+GVGK+S++ ++V F + TIGA F+TK V + L IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
RF SL +YRG+ V+VYD+ SF L W +E P+N + GNK D
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKEL----KEHGPENIVMAIAGNKCD 139
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+ + R V K A+ + S G I ETSAK IN+EE FQ I++
Sbjct: 140 LS--DIREVPLKDAKEYAESIGAI-VVETSAKNAINIEELFQGISR 182
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 105/165 (63%), Gaps = 7/165 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ +Q + + QIWDTAGQ
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ER++++ A+YRGA +LVYD+ +++N+ W +E A N +++GNK
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 144
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 172
D+ + R V +ARA+ A K + + ETSA + NVE AFQ I
Sbjct: 145 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 186
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 102/166 (61%), Gaps = 7/166 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
R+ SL +YRGA ++VYD+ + +SF NW +E QASP N + GNK D
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 123
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+ N R V ++A+++ A ++ + ETSAK +NV E F IAK
Sbjct: 124 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAK 166
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 102/166 (61%), Gaps = 7/166 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
R+ SL +YRGA ++VYD+ + +SF NW +E QASP N + GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+ N R V ++A+++ A ++ + ETSAK +NV E F IAK
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 105/165 (63%), Gaps = 7/165 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ +Q + + QIWDTAGQ
Sbjct: 20 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ER++++ A+YRGA +LVYD+ +++N+ W +E A N +++GNK
Sbjct: 80 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 135
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 172
D+ + R V +ARA+ A K + + ETSA + NVE AFQ I
Sbjct: 136 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 177
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 102/166 (61%), Gaps = 7/166 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
R+ SL +YRGA ++VYD+ + +SF NW +E QASP N + GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+ N R V ++A+++ A ++ + ETSAK +NV E F IAK
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQ
Sbjct: 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ERF+++ ++YRGA ++VYDV +SF+N+ W +E AS +N +++GNK
Sbjct: 93 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 148
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
D+ +VV A+ + S G IP+ ETSAK NVE++F A
Sbjct: 149 DLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFXTXA 191
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 127 bits (318), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 102/166 (61%), Gaps = 7/166 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
R+ SL +YRGA ++VYD+ + +SF NW +E QASP N + GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+ N R V ++A+++ A ++ + ETSAK +NV E F IAK
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 127 bits (318), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 102/166 (61%), Gaps = 7/166 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
R+ SL +YRGA ++VYD+ + +SF NW +E QASP N + GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+ N R V ++A+++ A ++ + ETSAK +NV E F IAK
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 127 bits (318), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 102/166 (61%), Gaps = 7/166 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
R+ SL +YRGA ++VYD+ + +SF NW +E QASP N + GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+ N R V ++A+++ A ++ + ETSAK +NV E F IAK
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 127 bits (318), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 104/164 (63%), Gaps = 7/164 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
F+++ ++YRGA ++VYDV +SF+N+ W +E AS +N +++GNK D+
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDL 116
Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
+VV A+ + S G IP+ ETSAK NVE++F +A
Sbjct: 117 --TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 157
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 126 bits (317), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 102/166 (61%), Gaps = 7/166 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
R+ SL +YRGA ++VYD+ + +SF NW +E QASP N + GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+ N R V ++A+++ A ++ + ETSAK +NV E F IAK
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 101/166 (60%), Gaps = 7/166 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
R+ SL +YRGA ++VYD+ + +SF NW +E QASP N + GNK D
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 123
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+ N R V ++A+++ A ++ + ETSAK NV E F IAK
Sbjct: 124 L--ANKRAVDFQEAQSY-ADDNSLLFXETSAKTSXNVNEIFXAIAK 166
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 100/166 (60%), Gaps = 7/166 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
R+ SL +YRGA ++VYD+ + +F NW +E QASP N + GNK D
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKAD 121
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+ + R V ++A+A+ A ++ + ETSAK +NV E F IAK
Sbjct: 122 L--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAK 164
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 100/166 (60%), Gaps = 7/166 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TI A FLT+ V +D +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
R+ SL +YRGA ++VYD+ + +F NW +E QASP N + GNK D
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKAD 121
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+ + R V ++A+A+ A ++ + ETSAK +NV E F IAK
Sbjct: 122 L--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAK 164
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 104/165 (63%), Gaps = 7/165 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ +Q + + QIWDTAG
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ER++++ A+YRGA +LVYD+ +++N+ W +E A N +++GNK
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 144
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 172
D+ + R V +ARA+ A K + + ETSA + NVE AFQ I
Sbjct: 145 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 186
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ERF+++ ++YRGA ++VYDV +SF+N+ W +E AS +N +++G K
Sbjct: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGIKC 123
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
D+ +VV A+ + S G IP+ ETSAK NVE++F +A
Sbjct: 124 DL--TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 166
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 101/166 (60%), Gaps = 7/166 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
R+ SL +YRGA ++VYD+ + +SF NW +E QASP N + GNK D
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 121
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+ N R V ++A+++ A ++ + ETSAK +NV E F IAK
Sbjct: 122 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAK 164
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 106/175 (60%), Gaps = 16/175 (9%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LF 57
L+K++ LGDSGVGKT+ + +Y + KF+ ++ T+G DF K V ++ +
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117
LQ+WDTAG ERF+SL AF+R A +L +D+ S +SF N+ NW + A +PD
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 172
V++GNK D+ + R V+E++AR A K IPYFETSA G NVE++ + +
Sbjct: 130 --IVLIGNKADLP--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETL 179
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 104/165 (63%), Gaps = 7/165 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ +Q + + QIWDTAG
Sbjct: 8 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ER++++ A+YRGA +LVYD+ +++N+ W +E A N +++GNK
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 123
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 172
D+ + R V +ARA+ A K + + ETSA + NVE AFQ I
Sbjct: 124 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 165
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
LKV +LGD+GVGK+S++ ++V F TIGA F+TK VQ+++ L IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
RF++L +YRG+ ++VYD+ ++F L NW E PS + GNK D
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS----IVVAIAGNKCD 121
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+ + R V E+ A+ + S I + ETSAK IN+ E F I++
Sbjct: 122 LT--DVREVMERDAKDYADSIHAI-FVETSAKNAININELFIEISR 164
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 103/165 (62%), Gaps = 7/165 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ +Q + + QIWDTAG
Sbjct: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ER++++ A+YRGA +LVYD+ +++N+ W +E A N ++GNK
Sbjct: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIXLVGNKS 126
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 172
D+ + R V +ARA+ A K + + ETSA + NVE AFQ I
Sbjct: 127 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 168
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 103/165 (62%), Gaps = 7/165 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ +Q + + QIWDTAG
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ER++++ A+YRGA +LVYD+ +++N+ W +E A N ++GNK
Sbjct: 65 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIXLVGNKS 120
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 172
D+ + R V +ARA+ A K + + ETSA + NVE AFQ I
Sbjct: 121 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 162
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 106/166 (63%), Gaps = 8/166 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAG 66
L K++++GDSGVGK++L++++ +F+ + K+TIG +F TK +Q ++ ++ QIWDTAG
Sbjct: 7 LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
QER++++ A+YRGA +LVYD+ SF+N+ W +E A N +++GNK
Sbjct: 67 QERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADS----NIVILLVGNK 122
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 172
D+ + RV+++ A + A K + + ETSA E NVE AF +
Sbjct: 123 SDLK--HLRVINDNDATQY-AKKEKLAFIETSALEATNVELAFHQL 165
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 123 bits (309), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 96/166 (57%), Gaps = 7/166 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
LKV +LGD+GVGK+S+M ++V F TIGA F+TK VQ+++ L IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
RF++L +YRG+ ++VYD+ ++F L NW E PS + GNK D
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS----IVVAIAGNKCD 122
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+ + R V E+ A+ + S I + ETSAK IN+ E F I++
Sbjct: 123 LT--DVREVMERDAKDYADSIHAI-FVETSAKNAININELFIEISR 165
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 101/167 (60%), Gaps = 7/167 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K II+GD+GVGK+ L+ Q+ +K+F + TIG +F + V + + LQIWDTAGQ
Sbjct: 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
E F+S+ ++YRGA +LVYD+ ++F++L +W E+ A N +++GNK
Sbjct: 81 ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED----ARQHSSSNMVIMLIGNKS 136
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
D++ + R V ++ A+ G I + ETSAK NVEEAF AK
Sbjct: 137 DLE--SRRDVKREEGEAFAREHGLI-FMETSAKTACNVEEAFINTAK 180
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 102/168 (60%), Gaps = 8/168 (4%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
+++K++++GDSGVGK+ L+ ++V KF+ + TIG DF K V + LQ+WDTAG
Sbjct: 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 78
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
QERF+++ A+YRGA +LVYDV ++F N+ W + A+ D +++GNK
Sbjct: 79 QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 134
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
D++ +RVV+ + A G IP+ E+SAK NV E F +AK
Sbjct: 135 SDME---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 178
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 123 bits (308), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 101/168 (60%), Gaps = 8/168 (4%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
+++K++++GDSGVGK+ L+ ++V KF+ + TIG DF K V + LQIWDTAG
Sbjct: 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
QERF+++ A+YRGA +LVYD+ ++F N+ W + + D +++GNK
Sbjct: 62 QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFK----TVNEHANDEAQLLLVGNK 117
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
D++ +RVV+ + A G IP+ E+SAK NV E F +AK
Sbjct: 118 SDME---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 161
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 102/168 (60%), Gaps = 8/168 (4%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
+++K++++GDSGVGK+ L+ ++V KF+ + TIG DF K V + LQ+WDTAG
Sbjct: 6 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 65
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
QERF+++ A+YRGA +LVYDV ++F N+ W + A+ D +++GNK
Sbjct: 66 QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 121
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
D++ +RVV+ + A G IP+ E+SAK NV E F +AK
Sbjct: 122 SDME---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 165
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 107/177 (60%), Gaps = 10/177 (5%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K +++G++G GK+ L++Q++ KKF + TIG +F +K + + LQIWDTAGQ
Sbjct: 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ERF+S+ ++YRGA +LVYD+ S ++++ L NW L A N ++ GNK
Sbjct: 70 ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----LTDARMLASQNIVIILCGNKK 125
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF-QCIAK--NALKSGE 181
D+D R V+ +A + A + + + ETSA G NVEEAF QC K N ++SGE
Sbjct: 126 DLDA--DREVTFLEASRF-AQENELMFLETSALTGENVEEAFVQCARKILNKIESGE 179
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 112/185 (60%), Gaps = 7/185 (3%)
Query: 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
M S L K++++G+SGVGK+ L+ ++ + ++N Y +TIG DF K V+ + + LQ
Sbjct: 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
IWDTAGQERF+++ ++YRG+ ++VYDV +SF+ + W +E A+ +
Sbjct: 61 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST----VLK 116
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
+++GNK D+ + RVV A+ + A +P+ ETSA + NVE+AF +A+ +S
Sbjct: 117 LLVGNKCDLK--DKRVVEYDVAKEF-ADANKMPFLETSALDSTNVEDAFLTMARQIKESM 173
Query: 181 EEEEI 185
++ +
Sbjct: 174 SQQNL 178
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 112/185 (60%), Gaps = 7/185 (3%)
Query: 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
M S L K++++G+SGVGK+ L+ ++ + ++N Y +TIG DF K V+ + + LQ
Sbjct: 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
IWDTAGQERF+++ ++YRG+ ++VYDV +SF+ + W +E A+ +
Sbjct: 61 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST----VLK 116
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
+++GNK D+ + RVV A+ + A +P+ ETSA + NVE+AF +A+ +S
Sbjct: 117 LLVGNKCDLK--DKRVVEYDVAKEF-ADANKMPFLETSALDSTNVEDAFLTMARQIKESM 173
Query: 181 EEEEI 185
++ +
Sbjct: 174 SQQNL 178
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 100/167 (59%), Gaps = 7/167 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K II+GD+GVGK+ L+ Q+ +K+F + TIG +F + + + + LQIWDTAGQ
Sbjct: 10 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 69
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
E F+S+ ++YRGA +LVYD+ +F++L W E+ A N +++GNK
Sbjct: 70 ESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLED----ARQHSNSNMVIMLIGNKS 125
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
D++ + R V +++ A+ G I + ETSAK NVEEAF AK
Sbjct: 126 DLE--SRREVKKEEGEAFAREHGLI-FMETSAKTASNVEEAFINTAK 169
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 8/168 (4%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
++ K++++GDSGVGK+ L+ ++V KF+ + TIG DF K V + LQIWDTAG
Sbjct: 2 SIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
QERF+++ A+YRGA +LVYD+ ++F N+ W + A+ D +++GNK
Sbjct: 62 QERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 117
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
D + +RVV+ + A G IP+ E+SAK NV E F +AK
Sbjct: 118 SDXE---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 161
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 98/167 (58%), Gaps = 8/167 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
KV+++GDSGVGKT L+ ++ + F + + +T+G DF K + + LQ+WDTAGQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ERF+S+ A+YR A +L+YDV + SFDN+ W L + + ++LGNK
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAW----LTEIHEYAQHDVALMLLGNK- 125
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
VD + RVV + G +P+ ETSAK G+NV+ AF IAK
Sbjct: 126 -VDSAHERVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAK 170
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 8/168 (4%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
++ K++++GDSGVGK+ L+ ++V KF+ + TIG DF K V + LQ+WDTAG
Sbjct: 2 SIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 61
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
QERF+++ A+YRGA +LVYDV ++F N+ W + A+ D +++GNK
Sbjct: 62 QERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 117
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
D + +RVV+ + A G IP+ E+SAK NV E F +AK
Sbjct: 118 SDXE---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 161
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 120 bits (301), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 100/170 (58%), Gaps = 7/170 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++ LG+ VGKTSL+ +++ F N Y+ATIG DFL+K + EDR LQ+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
RF+SL ++ R + V+VYD+ ++ SF + W ++ + +++GNK D
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDD----VRTERGSDVIIMLVGNKTD 118
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+ + E + R A + ++ + ETSAK G NV++ F+ +A L+
Sbjct: 119 LADKRQITIEEGEQR---AKELSVMFIETSAKTGYNVKQLFRRVASALLE 165
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 120 bits (300), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 107/172 (62%), Gaps = 7/172 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++G+SGVGK+ L+ ++ + ++N Y +TIG DF K V+ + + LQIWDTAGQ
Sbjct: 21 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ERF+++ ++YRG+ ++VYDV +SF+ + W +E A+ + +++GNK
Sbjct: 81 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST----VLKLLVGNKC 136
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
D+ + RVV A+ + A +P+ ETSA + NVE+AF +A+ +S
Sbjct: 137 DLK--DKRVVEYDVAKEF-ADANKMPFLETSALDSTNVEDAFLTMARQIKES 185
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 101/163 (61%), Gaps = 7/163 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+ K++I+G+S VGKTS + +Y + F+ + +T+G DF K + D+ LQIWDTAGQ
Sbjct: 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ 64
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ER++++ A+YRGA +L+YD+ + +SF+ + +W Q DN +++GNK
Sbjct: 65 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWS----TQIKTYSWDNAQVLLVGNKC 120
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
D++ + RVVS ++ R G +FE SAK+ INV++ F+
Sbjct: 121 DME--DERVVSSERGRQLADHLG-FEFFEASAKDNINVKQTFE 160
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 116/190 (61%), Gaps = 7/190 (3%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK++L++++ +F+ K+TIG +F T+ ++ E + QIWDTAGQ
Sbjct: 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ER++++ A+YRGA ++VYD++ S++N N+W E A DN ++GNK
Sbjct: 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD----DNVAVGLIGNKS 128
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL 187
D+ + R V ++++ + A + + + ETSA NV++AF+ + + + ++ L
Sbjct: 129 DL--AHLRAVPTEESKTF-AQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDL 185
Query: 188 PDTIDVGNSS 197
D+ GN++
Sbjct: 186 GDSSANGNAN 195
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 100/169 (59%), Gaps = 15/169 (8%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++ LG+ VGKTSL+ +++ F N Y+ATIG DFL+K + EDR LQ+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
RF+SL ++ R + V+VYD+ ++ SF W ++ + +++GNK D
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDD----VRTERGSDVIIMLVGNKTD 117
Query: 129 VDGGNSRVVS----EKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
+ + R VS E+KA+ N+ + ETSAK G NV++ F+ +A
Sbjct: 118 L--ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 159
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 112/206 (54%), Gaps = 19/206 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++ LG+ VGKTSL+ +++ F N Y+ATIG DFL+K + EDR LQ+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
RF+SL ++ R + V+VYD+ ++ SF W ++ + + +++GNK D
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTD 129
Query: 129 VDGGNSRVVS----EKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEE 184
+ + R VS E+KA+ N+ + ETSAK G NV++ F+ +A ++
Sbjct: 130 L--ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVAAALPGMESTQD 182
Query: 185 IYLPDTIDV---GNSSQPRSS-GCEC 206
D ID+ QP S GC C
Sbjct: 183 RSREDMIDIKLEKPQEQPVSEGGCSC 208
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 103/170 (60%), Gaps = 8/170 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K++++G+ VGK+S++ +Y F+ YK TIG DFL +++Q D L +WDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
F ++ A+YRGA CVLV+ +SF+ +++WRE+ + ++ + P ++ NKID
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVV-----AEVGDIPTALVQNKID 120
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+ + + ++A A + + ++ TS KE +NV E F+ +A+ L+
Sbjct: 121 L--LDDSCIKNEEAEG-LAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 15/169 (8%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++ LG+ VGKTSL+ +++ F N Y+ATIG DFL+K + EDR LQ+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
RF+SL ++ R + V+VYD+ ++ SF W ++ + + +++GNK D
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTD 122
Query: 129 VDGGNSRVVS----EKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
+ + R VS E+KA+ N+ + ETSAK G NV++ F+ +A
Sbjct: 123 L--ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 164
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 100/165 (60%), Gaps = 7/165 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++ LG+ VGKTSL+ +++ F N Y+ATIG DFL+K + EDR LQ+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
RF+SL ++ R + V+VYD+ + SF + W ++ + + +++GNK D
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS----DVIIMLVGNKTD 130
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
+ +V +E+ R A + N+ + ETSAK G NV++ F+ +A
Sbjct: 131 L-SDKRQVSTEEGERK--AKELNVMFIETSAKAGYNVKQLFRRVA 172
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
L+VII+G GVGKTSLM ++ + F K+T+G DF K V+ + LQIWDTAGQE
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
RF S+ A+YR A +LVYD+ ++FD+L W + AS ++ +++GNK+D
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS----EDAELLLVGNKLD 142
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+ R ++ ++ + + + E SAK+ NV+E F + + LK
Sbjct: 143 CE--TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 100/170 (58%), Gaps = 8/170 (4%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
T +K+++LG++ VGK+S++ ++V+ F+ + TIGA FLT+ V + +IWDTAG
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
QERF SL +YR A ++VYDV +SF +W +E QAS + ++GNK
Sbjct: 62 QERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS----KDIIIALVGNK 117
Query: 127 IDV--DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
ID +GG +V E+ + A + + +FETSAK G NV + F I +
Sbjct: 118 IDXLQEGGERKVAREEGEK--LAEEKGLLFFETSAKTGENVNDVFLGIGE 165
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 117 bits (292), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 101/168 (60%), Gaps = 8/168 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K +++G++G GK+ L++Q++ KKF + TIG +F +K + + LQIWDTAGQ
Sbjct: 11 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ERF+S+ ++YRGA +LVYD+ S ++++ L NW L A N ++ GNK
Sbjct: 71 ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----LTDARMLASQNIVIILCGNKK 126
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF-QCIAK 174
D+D R V+ +A + A + + + ETSA G +VEEAF QC K
Sbjct: 127 DLDA--DREVTFLEASRF-AQENELMFLETSALTGEDVEEAFVQCARK 171
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 116 bits (291), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 100/169 (59%), Gaps = 15/169 (8%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++ LG+ VGKTSL+ +++ F N Y+ATIG DFL+K + EDR LQ+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
RF+SL ++ R + V+VYD+ ++ SF W ++ + + +++GNK D
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTD 122
Query: 129 VDGGNSRVVS----EKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
+ + R VS E+KA+ N+ + ETSAK G NV++ F+ +A
Sbjct: 123 L--ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 164
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 116 bits (291), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 102/173 (58%), Gaps = 7/173 (4%)
Query: 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
P + K II+GD GVGK+ L++Q+ KKF TIG +F T+ ++ + LQI
Sbjct: 9 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI 68
Query: 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
WDTAGQERF+++ ++YRGA ++VYD+ ++++L++W L A N +
Sbjct: 69 WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW----LTDARNLTNPNTVII 124
Query: 122 VLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
++GNK D++ R V+ ++A+ + G + + E SAK G NVE+AF AK
Sbjct: 125 LIGNKADLEA--QRDVTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAK 174
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 116 bits (291), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
KV++LG+ VGKTSL+ +Y KF++++ T+GA FLTK++ + L IWDTAGQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
RF +LG +YR ++ +LVYD+ SF + NW +E + ++GNKID
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL----RKMLGNEICLCIVGNKID 122
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
++ R VS ++A ++ S G ++ TSAK+ +EE F + K +++
Sbjct: 123 LE--KERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCKRMIET 170
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 110/202 (54%), Gaps = 18/202 (8%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++ LG+ VGKTSL+ +++ F N Y+ATIG DFL+K + EDR LQ+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
RF+SL ++ R + V+VYD+ ++ SF W ++ + + +++GNK D
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTD 132
Query: 129 VDGGNSRVVS----EKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEE 184
+ + R VS E+KA+ N+ + ETSAK G NV++ F+ +A ++
Sbjct: 133 L--ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVAAALPGMESTQD 185
Query: 185 IYLPDTIDV---GNSSQPRSSG 203
D ID+ QP S G
Sbjct: 186 RSREDMIDIKLEKPQEQPVSEG 207
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 100/170 (58%), Gaps = 7/170 (4%)
Query: 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
+P + K++++G+S VGKTS + +Y + F+ + +T+G DF K V D+ LQ
Sbjct: 15 VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQ 74
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
IWDTAGQER++++ A+YRGA +L+YD+ + +SF + +W Q DN
Sbjct: 75 IWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDW----ATQIKTYSWDNAQV 130
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
+++GNK D++ + RVV + R G +FE SAKE INV++ F+
Sbjct: 131 ILVGNKCDLE--DERVVPAEDGRRLADDLG-FEFFEASAKENINVKQVFE 177
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 100/163 (61%), Gaps = 7/163 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+ K++I+G+S VGKTS + +Y + F+ + +T+G DF K V ++ LQIWDTAGQ
Sbjct: 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ER++++ A+YRGA +L+YD+ + +SF+ + +W Q DN +++GNK
Sbjct: 83 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW----ATQIKTYSWDNAQVILVGNKC 138
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
D++ RVV +K + A + +FE SAKE I+V +AF+
Sbjct: 139 DME--EERVVPTEKGQL-LAEQLGFDFFEASAKENISVRQAFE 178
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 99/166 (59%), Gaps = 7/166 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++G++GVGKT L+ ++ F ATIG DF+ K V+ LQIWDTAGQ
Sbjct: 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ERF+S+ ++YR A+ +L YD+ +SF L W E AS + V++GNKI
Sbjct: 86 ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS----NKVITVLVGNKI 141
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
D+ R VS+++A + ++ ++ Y ETSAKE NVE+ F +A
Sbjct: 142 DL--AERREVSQQRAEEFSEAQ-DMYYLETSAKESDNVEKLFLDLA 184
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 104/177 (58%), Gaps = 10/177 (5%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K +++G +G GK+ L++Q++ KF TIG +F ++ V + LQIWDTAGQ
Sbjct: 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ERF+S+ ++YRGA +LVYD+ S +++++L W + ASP N ++ GNK
Sbjct: 85 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP----NIVVILCGNKK 140
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK---NALKSGE 181
D+D R V+ +A + A + + + ETSA G NVEEAF A+ N + SGE
Sbjct: 141 DLD--PEREVTFLEASRF-AQENELMFLETSALTGENVEEAFLKCARTILNKIDSGE 194
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 97/162 (59%), Gaps = 7/162 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++I+G+S VGKTS + +Y + F+ + +T+G DF K + D+ LQIWDTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
R++++ A+YRGA +L YD+ + +SF+ + +W Q DN +++GNK D
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWS----TQIKTYSWDNAQVLLVGNKCD 124
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
+ + RVVS ++ R G +FE SAK+ INV++ F+
Sbjct: 125 XE--DERVVSSERGRQLADHLG-FEFFEASAKDNINVKQTFE 163
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 7/165 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K+++LGD G GK+SL+ ++V +F ++TIGA F ++ + D +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
+ SL +YRGA ++V+DV + SF+ W +E Q +P N + GNK D+
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP----NMVMALAGNKSDL 129
Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
++R V+ + A+ + G + + ETSAK NV+E F IA+
Sbjct: 130 L--DARKVTAEDAQTYAQENG-LFFMETSAKTATNVKEIFYEIAR 171
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 100/168 (59%), Gaps = 8/168 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K +++G++G GK+ L++Q++ KKF + TIG +F +K + + LQIWDTAG
Sbjct: 8 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGL 67
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ERF+S+ ++YRGA +LVYD+ S ++++ L NW L A N ++ GNK
Sbjct: 68 ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----LTDARMLASQNIVIILCGNKK 123
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF-QCIAK 174
D+D R V+ +A + A + + + ETSA G +VEEAF QC K
Sbjct: 124 DLDA--DREVTFLEASRF-AQENELMFLETSALTGEDVEEAFVQCARK 168
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 113 bits (283), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 105/163 (64%), Gaps = 7/163 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK++L++++ +F+ + K+TIG +F T+ ++ E++ QIWDTAG
Sbjct: 10 LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ER++++ A+YRGA ++VYD++ S++N N+W L + + DN ++GNK
Sbjct: 70 ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHW----LTELRENADDNVAVGLIGNKS 125
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
D+ + R V +A+ + A + + + ETSA NV++AF+
Sbjct: 126 DL--AHLRAVPTDEAKNF-AMENQMLFTETSALNSDNVDKAFR 165
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 113 bits (283), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 100/171 (58%), Gaps = 7/171 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
KV++LG+ VGKTSL+ +Y KF++++ T+ A FLTK++ + L IWDTAGQE
Sbjct: 21 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 80
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
RF +LG +YR ++ +LVYD+ SF + NW +E + ++GNKID
Sbjct: 81 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL----RKMLGNEICLCIVGNKID 136
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
++ R VS ++A ++ S G ++ TSAK+ +EE F + K +++
Sbjct: 137 LE--KERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCKRMIET 184
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 113 bits (283), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 7/173 (4%)
Query: 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
P + K II+GD GVGK+ L++Q+ KKF TIG +F T+ ++ + LQI
Sbjct: 24 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI 83
Query: 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
WDTAGQ RF+++ ++YRGA ++VYD+ ++++L++W L A N +
Sbjct: 84 WDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW----LTDARNLTNPNTVII 139
Query: 122 VLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
++GNK D++ R V+ ++A+ + G + + E SAK G NVE+AF AK
Sbjct: 140 LIGNKADLEA--QRDVTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAK 189
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 113 bits (283), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 100/171 (58%), Gaps = 7/171 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
KV++LG+ VGKTSL+ +Y KF++++ T+ A FLTK++ + L IWDTAGQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
RF +LG +YR ++ +LVYD+ SF + NW +E + ++GNKID
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL----RKMLGNEICLCIVGNKID 122
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
++ R VS ++A ++ S G ++ TSAK+ +EE F + K +++
Sbjct: 123 LE--KERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCKRMIET 170
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 7/167 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+ KV+++G+SGVGKT+L++++ +FS+ + TIG +F T+ V QIWDTAG
Sbjct: 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ER++++ A+YRGA +LV+D+ +++ + W +E A + +++GNK
Sbjct: 85 ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT----IVVMLVGNKS 140
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
D+ +R V ++AR + + G + + ETSA + NVE AF+ + K
Sbjct: 141 DLS--QAREVPTEEARMFAENNG-LLFLETSALDSTNVELAFETVLK 184
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 100/167 (59%), Gaps = 7/167 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+ KV+++G+SGVGKT+L++++ +FS+ + TIG +F T+ V QIWDTAG
Sbjct: 10 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 69
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ER++++ A+YRGA +LV+D+ +++ + W +E A + +++GNK
Sbjct: 70 ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT----IVVMLVGNKS 125
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
D+ +R V ++AR + + G + + ETSA + NVE AF+ + K
Sbjct: 126 DLS--QAREVPTEEARMFAENNG-LLFLETSALDSTNVELAFETVLK 169
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 97/166 (58%), Gaps = 6/166 (3%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GD+ VGKT ++ ++ FS + +TIG DF K ++ + + LQIWDTAGQ
Sbjct: 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
ERF+++ ++YR A+ +L YD+ SF ++ +W E+ A N +++GNK
Sbjct: 89 ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS----NIVQLLIGNKS 144
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
D+ R VS +A++ + ETSAK+ NVEEAF +A
Sbjct: 145 DLS--ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVA 188
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 100/173 (57%), Gaps = 7/173 (4%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
T LK++I+G+SGVGK+SL+ ++ + F + ATIG DF K + + L IWDTAG
Sbjct: 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 73
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
QERF++L ++YRGA +LVYDV +F L+NW E + +D N ++GNK
Sbjct: 74 QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVN---XLVGNK 130
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
ID + +R V + + A K + + E SAK V+ AF+ + + +++
Sbjct: 131 IDKE---NREVDRNEGLKF-ARKHSXLFIEASAKTCDGVQCAFEELVEKIIQT 179
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 106 bits (265), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 98/164 (59%), Gaps = 7/164 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++ LG+ VGKTS++ ++ F N Y++TIG DFL+K + ++ LQ+WDTAGQER
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
F+SL ++ R + ++VYD+ + +SF+N W ++ L + + ++GNK D+
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGK----DVIIALVGNKTDL 118
Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
G+ R V+ ++ A + N + ETSAK G N++ F+ A
Sbjct: 119 --GDLRKVTYEEGXQ-KAQEYNTXFHETSAKAGHNIKVLFKKTA 159
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
R + K+I++GDS VGKT L ++ +F ++ +ATIG DF + V + +Q+WDT
Sbjct: 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDT 76
Query: 65 AGQERF-QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL 123
AGQERF +S+ +YR V VYD+ +M SF +L W EE +D P +++
Sbjct: 77 AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND---IPRILV 133
Query: 124 GNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK---EGINVEEAFQCIAKNALKS 179
GNK D+ V A+ + A ++P FETSAK + +VE F +A + LKS
Sbjct: 134 GNKCDLRSAIQ--VPTDLAQKF-ADTHSMPLFETSAKNPNDNDHVEAIFMTLA-HKLKS 188
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 98/183 (53%), Gaps = 11/183 (6%)
Query: 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
+P R + K+I++GDS VGKT L ++ +F ++ +ATIG DF + V + +Q
Sbjct: 22 LPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ 81
Query: 61 IWDTAGQERF-QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119
+WDTAGQERF +S+ +YR V VYD + SF +L W EE +D P
Sbjct: 82 LWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLAND---IP 138
Query: 120 FVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK---EGINVEEAFQCIAKNA 176
+++GNK D+ V A+ + A + P FETSAK + +VE F +A +
Sbjct: 139 RILVGNKCDLRSAIQ--VPTDLAQKF-ADTHSXPLFETSAKNPNDNDHVEAIFXTLA-HK 194
Query: 177 LKS 179
LKS
Sbjct: 195 LKS 197
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 79/119 (66%), Gaps = 4/119 (3%)
Query: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQERF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
+++ ++YRGA ++VYDV +SF+N+ W +E AS +N +++GNK D+
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDL 115
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 90/171 (52%), Gaps = 7/171 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQ 67
LK+++LGD GKTSL + + F QYK TIG DF + + L TLQIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL-GNK 126
+ + GA +LVYD+ + +SF+NL +W +++ + + P V L GNK
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYT--VVKKVSEESETQPLVALVGNK 124
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
ID++ + R + +K +C G +F SAK G +V FQ +A L
Sbjct: 125 IDLE--HMRTIKPEKHLRFCQENGFSSHF-VSAKTGDSVFLCFQKVAAEIL 172
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 95/173 (54%), Gaps = 9/173 (5%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K+++ GD+ VGK+S + + +F AT+G DF K + + LQ+WDTAGQER
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
F+S+ +++R AD +L+YDV KSF N+ W + +I+ + + P +++GNK D+
Sbjct: 90 FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVD--MIEDAAH--ETVPIMLVGNKADI 145
Query: 130 DGGNS----RVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+ + V + G + + ETSAK+G N+ EA +A+ K
Sbjct: 146 RDTAATEGQKCVPGHFGEKLAMTYGAL-FCETSAKDGSNIVEAVLHLAREVKK 197
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 94/168 (55%), Gaps = 8/168 (4%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
T K++++G GVGK++L Q + F ++Y TI D K+V + L I DTAG
Sbjct: 2 TEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAG 60
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
QE + ++ + R + + V+ +N+ KSF++++ +RE+ D D+ P V++GNK
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNK 117
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
D+ G R V ++A+ S G IPY ETSAK VE+AF + +
Sbjct: 118 CDLAG---RTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 94/168 (55%), Gaps = 8/168 (4%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
T K++++G GVGK++L Q + F ++Y TI D K+V + L I DTAG
Sbjct: 2 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAG 60
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
QE + ++ + R + + V+ +N+ KSF++++ +RE+ D D+ P V++GNK
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNK 117
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
D+ +R V ++A+ S G IPY ETSAK VE+AF + +
Sbjct: 118 CDL---AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 94/168 (55%), Gaps = 8/168 (4%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
T K++++G GVGK++L Q + F ++Y TI D K+V + L I DTAG
Sbjct: 2 TEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAG 60
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
QE + ++ + R + + V+ +N+ KSF++++ +RE+ D D+ P V++GNK
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNK 117
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
D+ +R V ++A+ S G IPY ETSAK VE+AF + +
Sbjct: 118 CDL---AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 10/180 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y AT+G + +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+F L +Y A C ++++DV S ++ N+ NW + L++ +N P V+ GNK+D
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 130
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
+ + S R K N+ Y++ SAK N E+ F +A+ + E + +P
Sbjct: 131 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 185
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 94/168 (55%), Gaps = 8/168 (4%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
T K++++G GVGK++L Q + F ++Y TI D K+V + L I DTAG
Sbjct: 2 TEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAG 60
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
QE + ++ + R + + V+ +N+ KSF++++ +RE+ D D+ P V++GNK
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNK 117
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
D+ +R V ++A+ S G IPY ETSAK VE+AF + +
Sbjct: 118 CDL---AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 10/180 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y AT+G + +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+F L +Y A C ++++DV S ++ N+ NW + L++ +N P V+ GNK+D
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 118
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
+ + S R K N+ Y++ SAK N E+ F +A+ + E + +P
Sbjct: 119 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 173
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 10/180 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y AT+G + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+F L +Y A C ++++DV S ++ N+ NW + L++ +N P V+ GNK+D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
+ + S R K N+ Y++ SAK N E+ F +A+ + E + +P
Sbjct: 126 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 10/180 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y AT+G + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+F L +Y A C ++++DV S ++ N+ NW + L++ +N P V+ GNK+D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
+ + S R K N+ Y++ SAK N E+ F +A+ + E + +P
Sbjct: 126 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 10/180 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y AT+G + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+F L +Y A C ++++DV S ++ N+ NW + L++ +N P V+ GNK+D
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
+ + S R K N+ Y++ SAK N E+ F +A+ + E + +P
Sbjct: 126 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 98/176 (55%), Gaps = 8/176 (4%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
T K++++G GVGK++L Q + F ++Y TI D K+V + L I DTAG
Sbjct: 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAG 61
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
QE + ++ + R + + V+ +N+ KSF++++++RE+ D ++ P V++GNK
Sbjct: 62 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNK 118
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182
D+ SR V K+A+ S G IP+ ETSAK V++AF + + K E+
Sbjct: 119 SDL---PSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 97/175 (55%), Gaps = 8/175 (4%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
T K++++G GVGK++L Q + F ++Y TI D K+V + L I DTAG
Sbjct: 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAG 61
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
QE + ++ + R + + V+ +N+ KSF++++++RE+ D ++ P V++GNK
Sbjct: 62 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNK 118
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE 181
D+ SR V K+A+ S G IP+ ETSAK V++AF + + K E
Sbjct: 119 CDL---PSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKE 169
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 92/180 (51%), Gaps = 10/180 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y AT+G + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
++ L +Y A C ++++DV S ++ N+ NW + L++ +N P V+ GNK+D
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
+ + S R K N+ Y++ SAK N E+ F +A+ + E + +P
Sbjct: 126 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 10/180 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y T+G + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+F L +Y A C ++++DV S ++ N+ NW + L++ +N P V+ GNK+D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
+ + S R K N+ Y++ SAK N E+ F +A+ + E + +P
Sbjct: 126 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 94/164 (57%), Gaps = 14/164 (8%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K+++LG GVGK++L Q+V F ++Y TI D K+V+ + + L+I DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTI-EDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
F ++ + + LVY + + +F++L + RE+ L D ++ P +++GNK D+
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTEDVPMILVGNKCDL 120
Query: 130 DGGNSRVVSEKK----ARAWCASKGNIPYFETSAKEGINVEEAF 169
+ + RVV +++ AR WC N + E+SAK INV E F
Sbjct: 121 E--DERVVGKEQGQNLARQWC----NCAFLESSAKSKINVNEIF 158
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 90/180 (50%), Gaps = 10/180 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y AT+G + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+F L +Y A C ++ +DV S ++ N+ NW + L++ +N P V+ GNK+D
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
+ + S R K N+ Y++ SAK N E+ F +A+ + E + P
Sbjct: 126 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAXP 180
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 101/190 (53%), Gaps = 30/190 (15%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD-----FLTK--EVQFEDRLFTLQI 61
K++++GD G GKT+ + +++ +F +Y ATIG + F T E++F+ +
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFD-------V 65
Query: 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
WDTAG E+F L +Y A C ++++DV S ++ N+ NW + L++ +N P V
Sbjct: 66 WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD-LVRVC----ENIPIV 120
Query: 122 VLGNKIDVDGGNSRVVSEKKARAWCAS---KGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+ GNK+D V E+K +A + K N+ Y++ SAK N E+ F +A+
Sbjct: 121 LCGNKVD--------VKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAG 172
Query: 179 SGEEEEIYLP 188
+ + E + P
Sbjct: 173 NPQLEFVASP 182
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 88/169 (52%), Gaps = 10/169 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y AT+G + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+F L +Y A C ++++DV S ++ N+ NW + L++ +N P V+ GNK+D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
+ + S R K N+ Y++ SAK N E+ F +A+ +
Sbjct: 126 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 10/180 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y AT+G + +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+F L +Y A C ++++DV S ++ N+ NW + L++ +N P V+ GNK+D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
+ + S R K N+ Y++ SAK N E+ F +A+ + E + +P
Sbjct: 126 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 10/180 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y AT+G + +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+F L +Y A C ++++DV S ++ N+ NW + L++ +N P V+ GNK+D
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 121
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
+ + S R K N+ Y++ SAK N E+ F +A+ + E + +P
Sbjct: 122 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 176
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 93/164 (56%), Gaps = 14/164 (8%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K+++LG GVGK++L Q+V F +Y TI D K+V+ + + L+I DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
F ++ + + LVY + + +F++L + RE+ L D ++ P +++GNK D+
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTEDVPMILVGNKCDL 120
Query: 130 DGGNSRVVSEKK----ARAWCASKGNIPYFETSAKEGINVEEAF 169
+ + RVV +++ AR WC N + E+SAK INV E F
Sbjct: 121 E--DERVVGKEQGQNLARQWC----NCAFLESSAKSKINVNEIF 158
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 10/180 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y AT+G + +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+F L +Y A C ++++DV S ++ N+ NW + L++ +N P V+ GNK+D
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 127
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
+ + S R K N+ Y++ SAK N E+ F +A+ + E + +P
Sbjct: 128 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 182
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 30/176 (17%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD-----FLTK--EVQFEDRLFTLQI 61
K++++GD G GKT+ + +++ +F +Y ATIG + F T E++F+ +
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFD-------V 57
Query: 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
WDTAG E+F L +Y A C ++++DV S ++ N+ NW + L++ +N P V
Sbjct: 58 WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD-LVRVC----ENIPIV 112
Query: 122 VLGNKIDVDGGNSRVVSEKKARAWCAS---KGNIPYFETSAKEGINVEEAFQCIAK 174
+ GNK+D V E+K +A + K N+ Y++ SAK N E+ F +A+
Sbjct: 113 LCGNKVD--------VKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 160
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 10/180 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ + +Y AT+G + +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+F L +Y A C ++++DV S ++ N+ NW + L++ +N P V+ GNK+D
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 130
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188
+ + S R K N+ Y++ SAK N E+ F +A+ + E + +P
Sbjct: 131 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 185
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 30/176 (17%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD-----FLTK--EVQFEDRLFTLQI 61
K++++GD G GKT+ + +++ +F +Y ATIG + F T E++F+ +
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFD-------V 58
Query: 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
WDTAG E+F L +Y A C ++++DV S ++ N+ NW + L++ +N P V
Sbjct: 59 WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD-LVRVC----ENIPIV 113
Query: 122 VLGNKIDVDGGNSRVVSEKKARAWCAS---KGNIPYFETSAKEGINVEEAFQCIAK 174
+ GNK+D V E+K +A + K N+ Y++ SAK N E+ F +A+
Sbjct: 114 LCGNKVD--------VKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 161
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 90/160 (56%), Gaps = 6/160 (3%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K+++LG GVGK++L Q+V F +Y TI D K+V+ + + L+I DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDAQQCMLEILDTAGTEQ 63
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
F ++ + + LVY + + +F++L + RE+ L D D+ P +++GNK D+
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTDDVPMILVGNKCDL 120
Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
+ + RVV +++ + N + E+SAK INV E F
Sbjct: 121 E--DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 12/174 (6%)
Query: 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED---RLFTLQ 60
RR K+ ++GD GVGKT+ +N+ ++ +F Y AT+GA + V F D +
Sbjct: 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA--VNHPVTFLDDQGNVIKFN 64
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
+WDTAGQE+ L +Y GA +L +DV S + NL W +EF QA + P
Sbjct: 65 VWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEF--QAVVGNEA--PI 120
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
VV NKID+ N + +S+K K N YFE SAK N F +A+
Sbjct: 121 VVCANKIDIK--NRQKISKKLVMEVLKGK-NYEYFEISAKTAHNFGLPFLHLAR 171
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 90/160 (56%), Gaps = 6/160 (3%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K+++LG GVGK++L Q+V F +Y TI D K+V+ + + L+I DTAG E+
Sbjct: 7 KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDAQQCMLEILDTAGTEQ 65
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
F ++ + + LVY + + +F++L + RE+ L D D+ P +++GNK D+
Sbjct: 66 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTDDVPMILVGNKCDL 122
Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
+ + RVV +++ + N + E+SAK INV E F
Sbjct: 123 E--DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 10/169 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y T+G + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+F L +Y A C ++++DV S ++ N+ NW + L++ +N P V+ GNK+D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
+ + S R K N+ Y++ SAK N E+ F +A+ +
Sbjct: 126 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 7/163 (4%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
L KVI++G GVGK++L Q++ +F Y+ T AD K+V + + I DTAG
Sbjct: 13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAG 71
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
QE + ++ ++R + + V+ + M+SF ++RE+ L + +N PF+++GNK
Sbjct: 72 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNK 128
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
D++ V E K R A + N+ Y ETSAK NV++ F
Sbjct: 129 SDLEDKRQVSVEEAKNR---AEQWNVNYVETSAKTRANVDKVF 168
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 89/186 (47%), Gaps = 25/186 (13%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+KV+++GD G GKTSL+ + + F Y T+ ++ +Q + + L IWDTAGQ+
Sbjct: 35 VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQD 93
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNF----PFVVL 123
+ L FY A +L +DV S SFDN+ N W E ++F P +V+
Sbjct: 94 DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV---------NHFCKKVPIIVV 144
Query: 124 GNKIDVDGGNSRV----------VSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173
G K D+ S V V+ + + S G + Y E SA+ NV FQ A
Sbjct: 145 GCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204
Query: 174 KNALKS 179
+ AL S
Sbjct: 205 EVALSS 210
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 7/163 (4%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
L KVI++G GVGK++L Q++ +F Y+ T AD K+V + + I DTAG
Sbjct: 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAG 75
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
QE + ++ ++R + + V+ + M+SF ++RE+ L + +N PF+++GNK
Sbjct: 76 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNK 132
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
D++ V E K R A + N+ Y ETSAK NV++ F
Sbjct: 133 SDLEDKRQVSVEEAKNR---AEQWNVNYVETSAKTRANVDKVF 172
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 7/163 (4%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
L KVI++G GVGK++L Q++ +F Y+ T AD K+V + + I DTAG
Sbjct: 5 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAG 63
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
QE + ++ ++R + + V+ + M+SF ++RE+ L + +N PF+++GNK
Sbjct: 64 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNK 120
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
D++ V E K R A + N+ Y ETSAK NV++ F
Sbjct: 121 SDLEDKRQVSVEEAKNR---AEQWNVNYVETSAKTRANVDKVF 160
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 7/163 (4%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
L KVI++G GVGK++L Q++ +F Y+ T AD K+V + + I DTAG
Sbjct: 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAG 61
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
QE + ++ ++R + + V+ + M+SF ++RE+ L + +N PF+++GNK
Sbjct: 62 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNK 118
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
D++ V E K R A + N+ Y ETSAK NV++ F
Sbjct: 119 SDLEDKRQVSVEEAKNR---ADQWNVNYVETSAKTRANVDKVF 158
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 13/185 (7%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+K + +GD VGKT ++ Y + KF Y T+ +F + V + ++ L +WDTAGQ
Sbjct: 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQ 67
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNK 126
E + L YRGAD VL + + S S++N L W E L + +P N P V++G K
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPE-LRRFAP----NVPIVLVGTK 122
Query: 127 IDV--DGG----NSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180
+D+ D G ++ V++ + G Y E S+K NV+ F K L+
Sbjct: 123 LDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182
Query: 181 EEEEI 185
+E+
Sbjct: 183 RRKEV 187
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 15/186 (8%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPR 200
+A+ S G IPY ETSAK VE+AF + + ++ + ++ PD S P
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVRE-IRQHKLRKLNPPD------ESGPG 180
Query: 201 SSGCEC 206
C+C
Sbjct: 181 CMSCKC 186
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 85/154 (55%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 89/163 (54%), Gaps = 7/163 (4%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
L KVI++G GVGK++L Q++ +F Y+ T AD K+V + + I DTAG
Sbjct: 5 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAG 63
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
E + ++ ++R + + V+ + M+SF ++RE+ L + +N PF+++GNK
Sbjct: 64 LEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNK 120
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
D++ V E K R A + N+ Y ETSAK NV++ F
Sbjct: 121 SDLEDKRQVSVEEAKNR---AEQWNVNYVETSAKTRANVDKVF 160
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 135
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 136 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 168
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 133
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 166
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 133
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 166
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKSDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI + K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K +L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 88/162 (54%), Gaps = 8/162 (4%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++++RE+ D ++ P V++GNK D+ SR V K
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKSDL---PSRTVDTK 129
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182
+A+ S G IP+ ETSAK V++AF + + K E+
Sbjct: 130 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 88/162 (54%), Gaps = 8/162 (4%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++++RE+ D ++ P V++GNK D+ SR V K
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKSDL---PSRTVDTK 129
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182
+A+ S G IP+ ETSAK V++AF + + K E+
Sbjct: 130 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F +Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GN+ D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNRCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y +I D K+V + L I DTAGQE + ++ + R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 134
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 135 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 167
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAG E + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y +I D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DT GQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DT GQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAG+E + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F +++ TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTA QE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKXDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTA QE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKXDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q++ F + Y TI D TK + L I DTAGQE F ++ + R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+LV+ +N +SF+ + + L D D+FP V++GNK D++ + R V
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQIL---RVKDRDDFPVVLVGNKADLE--SQRQVPRS 135
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEE 183
+A A+ AS ++ YFE SAK +NV+EAF+ + + K E+E
Sbjct: 136 EASAFGASH-HVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQE 177
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 47/212 (22%)
Query: 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQ------------- 51
+++ K ++LG+S VGK+S++ + F TIGA F T V
Sbjct: 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNE 63
Query: 52 ----------------------FEDRLFTLQ--IWDTAGQERFQSLGVAFYRGADCCVLV 87
+ + L ++ IWDTAGQER+ S+ +YRGA C ++V
Sbjct: 64 KNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVV 123
Query: 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA 147
+D+++ + D W + I + N+ +++ NKID + ++ +K A
Sbjct: 124 FDISNSNTLDRAKTWVNQLKISS------NYIIILVANKIDKNKFQVDILEVQKY----A 173
Query: 148 SKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
N+ + +TSAK G N++ F +A+ K+
Sbjct: 174 QDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAG E + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAG E + ++ + R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 133
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 166
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 87/162 (53%), Gaps = 8/162 (4%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAG E + ++ + R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++++RE+ D ++ P V++GNK D+ SR V K
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKCDL---PSRTVDTK 146
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182
+A+ S G IP+ ETSAK V++AF + + K E+
Sbjct: 147 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 187
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 11/175 (6%)
Query: 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65
+ LK++++GD VGKT L+ + + Y T+ +F + +++++ F L +WDTA
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTA 79
Query: 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFVVLG 124
GQE + L Y +D +L + VN+ SFDN++ W E D V++G
Sbjct: 80 GQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI-----KHYIDTAKTVLVG 134
Query: 125 NKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ----CIAKN 175
K+D+ S V++++ C G + Y E S+ I + E F+ CI N
Sbjct: 135 LKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF ++N +RE+ D D+ P V++GNK D+ +R V K
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQI---KRVKDSDDVPMVLVGNKCDLP---TRTVDTK 146
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A S G IP+ ETSAK VE+AF + +
Sbjct: 147 QAHELAKSYG-IPFIETSAKTRQGVEDAFYTLVR 179
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 7/162 (4%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q++ F Y TI D TK+ +DR L I DTAGQE F ++ + R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTI-EDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ +LV+ V SF+ + ++ + L D D FP +++GNK D+D + R V+++
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQIL---RVKDRDEFPMILIGNKADLD--HQRQVTQE 131
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182
+ + A + + Y E SAK +NV++AF + + K E+
Sbjct: 132 EGQ-QLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQEQ 172
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
Query: 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
+PS K++++GD GVGK++L Q+ K F + Y TI +L K + +++ L
Sbjct: 11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYL-KHTEIDNQWAILD 69
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
+ DTAGQE F ++ + R D ++VY V SF++++ + + L D ++FP
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPM 126
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE-GINVEEAFQCIAK 174
+++ NK+D+ + R V+ + + A+K NIPY ETSAK+ +NV++ F + +
Sbjct: 127 ILVANKVDL--MHLRKVTRDQGKE-MATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAG E + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 11/172 (6%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
LK++++GD VGKT L+ + + Y T+ +F + +++++ F L +WDTAGQE
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 81
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y +D +L + VN+ SFDN++ W E D V++G K+
Sbjct: 82 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI-----KHYIDTAKTVLVGLKV 136
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ----CIAKN 175
D+ S V++++ C G + Y E S+ I + E F+ CI N
Sbjct: 137 DLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 188
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
Query: 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
+PS K++++GD GVGK++L Q+ K F +Y TI +L K + +++ L
Sbjct: 11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYL-KHTEIDNQWAILD 69
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
+ DTAGQE F ++ + R D ++VY V SF++++ + + L D ++FP
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPM 126
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE-GINVEEAFQCIAK 174
+++ NK+D+ + R V+ + + A+K NIPY ETSAK+ +NV++ F + +
Sbjct: 127 ILVANKVDL--MHLRKVTRDQGKE-MATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAG E + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAG E + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 10/164 (6%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KVI++G GVGK++L Q++ +F Y+ T AD K+V + + I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 65
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
E + ++ ++R + +LV+ + +SF +RE+ L ++ D P +V+GNK
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQIL--RVKAEEDKIPLLVVGNKS 123
Query: 128 DVDGGNSRVVSEKKARA--WCASKGNIPYFETSAKEGINVEEAF 169
D++ V E +++A W + Y ETSAK NV++ F
Sbjct: 124 DLEERRQVPVEEARSKAEEW-----GVQYVETSAKTRANVDKVF 162
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAG E + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
Query: 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
+PS K++++GD GVGK++L Q+ K F ++Y TI D K + +++ L
Sbjct: 11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTI-EDSYRKHTEIDNQWAILD 69
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
+ DTAGQE F ++ + R D ++VY V SF++++ + + L D ++FP
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPM 126
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE-GINVEEAFQCIAK 174
+++ NK+D+ + R V+ + + A+K NIPY ETSAK+ +NV++ F + +
Sbjct: 127 ILVANKVDL--MHLRKVTRDQGKE-MATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 87/162 (53%), Gaps = 6/162 (3%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KVI++G GVGK++L Q++ +F Y+ T AD K+V + + I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 61
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
E + ++ ++R + +LV+ + +SF +RE+ L ++ D P +V+GNK
Sbjct: 62 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQIL--RVKAEEDKIPLLVVGNKS 119
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
D++ V E +++ A + + Y ETSAK NV++ F
Sbjct: 120 DLEERRQVPVEEARSK---AEEWGVQYVETSAKTRANVDKVF 158
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 99/175 (56%), Gaps = 8/175 (4%)
Query: 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
+PS K++++GD GVGK++L Q+ K F Y TI +L K + +++ L
Sbjct: 6 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYL-KHTEIDNQWAILD 64
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
+ DTAGQE F ++ + R D ++VY V SF++++ + + L D ++FP
Sbjct: 65 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPM 121
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE-GINVEEAFQCIAK 174
+++ NK+D+ + R V+ + + A+K NIPY ETSAK+ +NV++ F + +
Sbjct: 122 ILVANKVDL--MHLRKVTRDQGKE-MATKYNIPYIETSAKDPPLNVDKTFHDLVR 173
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++ TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDECDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+ + V+ +N+ KSF++++ +RE+ D D+ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKSDL---AARTVESR 128
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
+A+ S G IPY ETSAK VE+AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 15/180 (8%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+K + +GD VGKT ++ Y F Y T+ +F + V + L +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNK 126
E + L YRGAD +L + + S S++N++ W E L +P P V++G K
Sbjct: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPE-LKHYAP----GIPIVLVGTK 119
Query: 127 IDV--------DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+D+ D + ++ + G + Y E S+K NV+ F + AL+
Sbjct: 120 LDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVALR 179
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 15/184 (8%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
KV+ILG VGKTSL +Q+V +FS Y T+ + +K V F L + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
+ L +F G VLVY V S+ SF + + ++ P V++GNK D+
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKL---HEGHGKTRVPVVLVGNKADL 141
Query: 130 DGGN--SRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF----QCIAKNALKSGEEE 183
V +K A +W A+ + E+SA+E + F Q IA+ G+E
Sbjct: 142 SPEREVQAVEGKKLAESWGAT-----FMESSARENQLTQGIFTKVIQEIARVENSYGQER 196
Query: 184 EIYL 187
+L
Sbjct: 197 RCHL 200
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 11/179 (6%)
Query: 1 MP-SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTL 59
MP S+ R K+ ILG VGK+SL Q+V +F + Y TI F TK + + + L
Sbjct: 1 MPQSKSR---KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHL 56
Query: 60 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119
Q+ DTAGQ+ + + + +LVY V S+KSF+ + + L P
Sbjct: 57 QLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIP 113
Query: 120 FVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+++GNK D+ RV+S ++ +A A N + E+SAKE + F+ I A K
Sbjct: 114 IMLVGNKKDLH--MERVISYEEGKA-LAESWNAAFLESSAKENQTAVDVFRRIILEAEK 169
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
MP + K+ ILG VGK+SL Q+V +F + Y TI F TK + + + LQ
Sbjct: 1 MPQSKSR--KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQ 57
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
+ DTAGQ+ + + + +LVY V S+KSF+ + + L P
Sbjct: 58 LVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPI 114
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+++GNK D+ RV+S ++ +A A N + E+SAKE + F+ I A K
Sbjct: 115 MLVGNKKDLH--MERVISYEEGKA-LAESWNAAFLESSAKENQTAVDVFRRIILEAEK 169
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K+ ILG VGK+SL Q+V +F + Y TI F TK + + + LQ+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
+ + + +LVY V S+KSF+ + + L P +++GNK D+
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDL 118
Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
RV+S ++ +A A N + E+SAKE + F+ I A K
Sbjct: 119 H--MERVISYEEGKA-LAESWNAAFLESSAKENQTAVDVFRRIILEAEK 164
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 15/180 (8%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+K + +GD VGKT ++ Y + F Y T+ +F + V + L +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQ 64
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNK 126
E + L YRGAD +L + + S S++N+ W E L +P P +++G K
Sbjct: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYAP----GVPIILVGTK 119
Query: 127 ID--------VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+D +D + ++ + G+ Y E S+K NV+ F K L+
Sbjct: 120 LDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQ 179
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 16/166 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
+V + G GVGK+SL+ ++V F Y T+ D + + + + TLQI DT G +
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV-EDTYRQVISCDKSICTLQITDTTGSHQ 63
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
F ++ +LVY + S +S + L E+ I D ++ P +++GNK
Sbjct: 64 FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQ--ICEIKGDVESIPIMLVGNK--C 119
Query: 130 DGGNSRVV----SEKKARAW-CASKGNIPYFETSAKEGINVEEAFQ 170
D SR V +E AR W CA + ETSAK NV+E FQ
Sbjct: 120 DESPSREVQSSEAEALARTWKCA------FMETSAKLNHNVKELFQ 159
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 15/180 (8%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+K + +GD VGKT L+ Y + F Y T+ +F + V L +WDTAGQ
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQ 66
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNK 126
E + L YRGAD +L + + S S++N++ W E L +P P V++G K
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP----GVPIVLVGTK 121
Query: 127 ID--------VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+D +D + ++ + G Y E S+K NV+ F + L+
Sbjct: 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 17/181 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ + +F Y T+ +++ +++ + + L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 67
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + ++S S +N+ W E + P N P +++GNK D
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 122
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+ D R +++ K R G Y E SAK V E F+ + AL+
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
Query: 179 S 179
+
Sbjct: 183 A 183
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 17/181 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ + +F Y T+ +++ +++ + + L +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 69
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + ++S S +N+ W E + P N P +++GNK D
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 124
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+ D R +++ K R G Y E SAK V E F+ + AL+
Sbjct: 125 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184
Query: 179 S 179
+
Sbjct: 185 A 185
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 17/181 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ + +F Y T+ +++ +++ + + L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 66
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + ++S S +N+ W E + P N P +++GNK D
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 121
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+ D R +++ K R G Y E SAK V E F+ + AL+
Sbjct: 122 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
Query: 179 S 179
+
Sbjct: 182 A 182
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 17/181 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ + +F Y T+ +++ +++ + + L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 65
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + ++S S +N+ W E + P N P +++GNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+ D R +++ K R G Y E SAK V E F+ + AL+
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
Query: 179 S 179
+
Sbjct: 181 A 181
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 17/181 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ + +F Y T+ +++ +++ + + L +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 68
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + ++S S +N+ W E + P N P +++GNK D
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 123
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+ D R +++ K R G Y E SAK V E F+ + AL+
Sbjct: 124 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183
Query: 179 S 179
+
Sbjct: 184 A 184
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 17/181 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ + +F Y T+ +++ +++ + + L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 67
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + ++S S +N+ W E + P N P +++GNK D
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 122
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+ D R +++ K R G Y E SAK V E F+ + AL+
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
Query: 179 S 179
+
Sbjct: 183 A 183
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+LK +++GD VGKT L+ Y N F +Y T+ D V + + L ++DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
E + L Y D ++ + V + SF N+ +EE++ + P N PF+++G +I
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNV---KEEWVPELKEYAP-NVPFLLIGTQI 132
Query: 128 DV--DGGNSRVVSEKKARAWCASKGN 151
D+ D +++ K + C +G
Sbjct: 133 DLRDDPKTLARLNDMKEKPICVEQGQ 158
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 17/181 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ + +F Y T+ +++ +++ + + L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 67
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + ++S S +N+ W E + P N P +++GNK D
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 122
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+ D R +++ K R G Y E SAK V E F+ + AL+
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
Query: 179 S 179
+
Sbjct: 183 A 183
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 17/181 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ + +F Y T+ +++ +++ + + L +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 66
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + ++S S +N+ W E + P N P +++GNK D
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 121
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+ D R +++ K R G Y E SAK V E F+ + AL+
Sbjct: 122 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
Query: 179 S 179
+
Sbjct: 182 A 182
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 93/179 (51%), Gaps = 8/179 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQFEDRLFTLQIW--DTA 65
KV ++G++ VGK++L++ + +K KF Y T G + + V D +++++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGN 125
G + ++ ++ G +LV+DV+SM+SF++ W E L A P V++ N
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF-ELLKSARPDRERPLRAVLVAN 140
Query: 126 KIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA-KEGINVEEAFQCIAKNALKSGEEE 183
K D+ +V + A+ W A+ + +F+ SA G + + F IA ++ E++
Sbjct: 141 KTDLPPQRHQVRLD-MAQDW-ATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDK 197
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 7/169 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K+ ILG VGK+SL Q+V +F + TI F TK + + + LQ+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
+ + + +LVY V S+KSF+ + + L P +++GNK D+
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDL 121
Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
RV+S ++ +A A N + E+SAKE + F+ I A K
Sbjct: 122 H--MERVISYEEGKA-LAESWNAAFLESSAKENQTAVDVFRRIILEAEK 167
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
LKV I+G+ GK++L+++Y+ + Q ++ G F KE+ + + + L I D G
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYV-QEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
Q F D V V+ + SF + N+ FL S + P V++G +
Sbjct: 79 ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNY---FLRLCSFRNASEVPMVLVGTQDA 130
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
+ N RV+ + +AR Y+ET A G+NVE FQ +A+ +
Sbjct: 131 ISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVV 179
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 7/155 (4%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q+V F +Y TI DF KE++ + L+I DTAG E+F S+ + +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+LVY + + +SF ++ R++ + + P +++GNK+D++ SE
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQII---RVKRYEKVPVILVGNKVDLESEREVSSSEG 131
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
+A A + P+ ETSAK V+E F I +
Sbjct: 132 RA---LAEEWGCPFMETSAKSKTMVDELFAEIVRQ 163
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 17/181 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ +F Y T+ +++ +++ + + L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 65
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + ++S S +N+ W E + P N P +++GNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+ D R +++ K R G Y E SAK V E F+ + AL+
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
Query: 179 S 179
+
Sbjct: 181 A 181
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 15/179 (8%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ + +F Y T+ +++ +++ + + L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQED 85
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
+ L Y D ++ + ++S D+L N E++ + P N P +++GNK D+
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSP---DSLENIPEKWTPEVKHFXP-NVPIILVGNKKDL 141
Query: 130 --DGGNSRVVSEKKARAWCASKGN--------IPYFETSAKEGINVEEAFQCIAKNALK 178
D R +++ K + +G Y E SAK V E F+ + L+
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 17/181 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ +F Y T+ +++ +++ + + L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 65
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + ++S S +N+ W E + P N P +++GNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+ D R +++ K R G Y E SAK V E F+ + AL+
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
Query: 179 S 179
+
Sbjct: 181 A 181
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 17/180 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ +F Y T+ +++ +++ + + L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 63
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + ++S S +N+ W E + P N P +++GNK D
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 118
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+ D R +++ K R G Y E SAK V E F+ + AL+
Sbjct: 119 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ + +F Y T+ +++ +++ + + L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQED 85
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + ++S S +N+ W E + P N P +++GNK D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 140
Query: 129 V--DGGNSRVVSEKKARAWCASKGN--------IPYFETSAKEGINVEEAFQCIAKNALK 178
+ D R +++ K + +G Y E SAK V E F+ + L+
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 17/180 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ +F Y T+ +++ +++ + + L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 65
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + ++S S +N+ W E + P N P +++GNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+ D R +++ K R G Y E SAK V E F+ + AL+
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ + +F Y T+ +++ +++ + + L +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 65
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ Y D ++ + ++S S +N+ W E + P N P +++GNK D
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+ D +R +++ K R G Y E SAK V E F+ + AL+
Sbjct: 121 LRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ +F Y T+ +++ +++ + + L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 63
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + ++S S +N+ W E + P N P +++GNK D
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 118
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
+ D R +++ K R G Y E SAK V E F+ + AL
Sbjct: 119 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S SF+N+ W E N P +++G K+
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
D+ D + EKK A G + Y E SA
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 17/168 (10%)
Query: 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
S+ +K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +W
Sbjct: 2 SKLMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLW 60
Query: 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFV 121
DTAGQE + L Y D ++ + + S SF+N+ W E N P +
Sbjct: 61 DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPII 115
Query: 122 VLGNKIDV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
++G K+D+ D + EKK A G + Y E SA
Sbjct: 116 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 163
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 64
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S SF+N+ W E N P +++G K+
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 119
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
D+ D + EKK A G + Y E SA
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 88/166 (53%), Gaps = 17/166 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K+ I G +GVGK++L+ +++ K+F +Y T+ + + + +D + +++I DTAGQE
Sbjct: 29 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQE 87
Query: 69 -RFQSLGVAFYRGADCCVLVYDVNSMKSFDN---LNNWREEFLIQASPSDPDNFPFVVLG 124
Q G R + VLVYD+ SF+ L N +E P N +++G
Sbjct: 88 DTIQREG--HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI------KKPKNVTLILVG 139
Query: 125 NKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI-NVEEAF 169
NK D+D +SR VS ++ A++ ++E SA G N+ E F
Sbjct: 140 NKADLD--HSRQVSTEEGEK-LATELACAFYECSACTGEGNITEIF 182
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 17/172 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKTSL+ Y + +Y T D + V + R LQ+ DTAGQ+
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT-AFDNFSAVVSVDGRPVRLQLCDTAGQD 79
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNK- 126
F L Y D +L + V S SF N++ W E + P +++G +
Sbjct: 80 EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKA-----PIILVGTQS 134
Query: 127 ---------IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
I++D + V E+ A+ Y E SA N++E F
Sbjct: 135 DLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S SF+N+ W E N P +++G K+
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
D+ D + EKK A G + Y E SA
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 120
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 121 LRDDPSTI--EKLAK 133
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 72
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 73 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 128
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 129 LRDDPSTI--EKLAK 141
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 121
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 122 LRDDPSTI--EKLAK 134
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 63
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 119
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 120 LRDDPSTI--EKLAK 132
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 121
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 122 LRDDPSTI--EKLAK 134
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 125
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 126 LRDDPSTI--EKLAK 138
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VXIGGEPYTLGLFDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 17/180 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ +F Y T+ +++ +++ + + L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQED 65
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + ++S S +N+ W E + P N P +++GNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
Query: 129 V--DGGNSRVVSEKKARAWCASKGN--------IPYFETSAKEGINVEEAFQCIAKNALK 178
+ D R +++ K + +G Y E SAK V E F+ + L+
Sbjct: 121 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 180
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y FS +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 72
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S SF+N+ W E N P +++G K+
Sbjct: 73 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 127
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
D+ D + EKK A G + Y E SA
Sbjct: 128 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 169
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 120
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 121 LRDDPSTI--EKLAK 133
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 122
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 123 LRDDPSTI--EKLAK 135
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 17/181 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ +F Y T+ +++ +++ + + L +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGLED 68
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + ++S S +N+ W E + P N P +++GNK D
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 123
Query: 129 V--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
+ D R +++ K R G Y E SAK V E F+ + AL+
Sbjct: 124 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183
Query: 179 S 179
+
Sbjct: 184 A 184
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S SF+N+ W E N P +++G K+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
D+ D + EKK A G + Y E SA
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 17/181 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S SF+N+ W E N P +++G K+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
D+ D + EKK A G + Y E SA ++ F + L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 K 178
K
Sbjct: 178 K 178
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S SF+N+ W E N P +++G K+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
D+ D + EKK A G + Y E SA
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 15/179 (8%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++++GD GKT L+ + +F Y T+ +++ +++ + + L +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 85
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
+ L Y D ++ + V+S D+L N E+++ + P N P +++ NK D+
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSP---DSLENIPEKWVPEVKHFCP-NVPIILVANKKDL 141
Query: 130 DGGNS----------RVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178
V RA Y E SAK V E F+ + AL+
Sbjct: 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ +F Y T+ +++ +V+ + R L +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVA-DVEVDGRRVELALWDTAGQED 70
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y ++ ++ + ++ S +N+ W E L P +++G K+D
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQ-----GVPIILVGCKVD 125
Query: 129 VDGGNSRV----------VSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177
+ + V+ ++ ++ G Y+E SAK G V E F+ + +L
Sbjct: 126 LRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATRASL 184
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S SF+N+ W E N P +++G K+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
D+ D + EKK A G + Y E SA
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S SF+N+ W E N P +++G K+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
D+ D + EKK A G + Y E SA
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S SF+N+ W E N P +++G K+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
D+ D + EKK A G + Y E SA
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 81
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S SF+N+ W E N P +++G K+
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 136
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
D+ D + EKK A G + Y E SA
Sbjct: 137 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 178
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 89
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S SF+N+ W E N P +++G K+
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 144
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
D+ D + EKK A G + Y E SA
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLRDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGK L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 125
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 126 LRDDPSTI--EKLAK 138
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y + ++ V +TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y K ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ L Y D ++ + V S SF+N+ +E+++ + + P PF+++G +ID
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 122
Query: 129 VDGGNSRVVSEKKAR 143
+ S + EK A+
Sbjct: 123 LRDDPSTI--EKLAK 135
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 9/165 (5%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L +V++LGD GVGKTSL + + K+ + ++ +G D + + + TL + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 68 ERFQS--LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGN 125
E+ + +G V+VY + SF++ + R + D+ P +++GN
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQL---RRTHQADHVPIILVGN 119
Query: 126 KIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
K D+ R VS ++ RA CA + + ETSA NV E F+
Sbjct: 120 KADL--ARCREVSVEEGRA-CAVVFDCKFIETSATLQHNVAELFE 161
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S SF+N+ W E N P +++G K+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
D+ D + EKK A G + Y E SA
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S SF+N+ W E N P +++G K+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
D+ D + EKK A G + Y E SA
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 89
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S SF+N+ W E N P +++G K+
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 144
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
D+ D + EKK A G + Y E SA
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGK L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 69
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S SF+N+ W E N P +++G K+
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 124
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
D+ D + EKK A G + Y E SA
Sbjct: 125 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 166
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 63
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S SF+N+ W E + P +++G K+
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----HTPILLVGTKL 118
Query: 128 DVDGGNSRV----------VSEKKARAWCASKGNIPYFETSA 159
D+ + ++ + A G++ Y E SA
Sbjct: 119 DLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 160
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 17/162 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S S++N+ W E + PS P +++G K+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPE-VRHHCPST----PIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKARAWCASKG--------NIPYFETSA 159
D+ D + EKK +G ++ Y E SA
Sbjct: 118 DLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 159
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 63
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S SF+N+ W E + P +++G K+
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----HTPILLVGTKL 118
Query: 128 DVDGGNSRV----------VSEKKARAWCASKGNIPYFETSA 159
D+ + ++ + A G++ Y E SA
Sbjct: 119 DLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 160
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 17/172 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S SF+N+ W E + P +++G K+
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----HTPILLVGTKL 117
Query: 128 DVDGGNSRV----------VSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169
D+ + ++ + A G++ Y E SA ++ F
Sbjct: 118 DLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 65
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S SF+N+ W E N P +++G K+
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 120
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
D+ D + EKK A G + Y E SA
Sbjct: 121 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 162
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAG E
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 89
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S SF+N+ W E N P +++G K+
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 144
Query: 128 DV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
D+ D + EKK A G + Y E SA
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 17/162 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 68
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S S++N+ W E + PS P +++G K+
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPE-VRHHCPST----PIILVGTKL 123
Query: 128 DV--DGGNSRVVSEKKARAWCASKG--------NIPYFETSA 159
D+ D + EKK +G ++ Y E SA
Sbjct: 124 DLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 165
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 17/165 (10%)
Query: 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65
+ L+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTA
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTA 211
Query: 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLG 124
G E + L Y D ++ + + S SF ++ W E N P +++G
Sbjct: 212 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVG 266
Query: 125 NKIDV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
K+D+ D + EKK A G + Y E SA
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 17/165 (10%)
Query: 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65
+ L+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTA
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTA 211
Query: 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLG 124
G E + L Y D ++ + + S SF ++ W E N P +++G
Sbjct: 212 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVG 266
Query: 125 NKIDV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
K+D+ D + EKK A G + Y E SA
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 17/165 (10%)
Query: 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65
+ L+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTA
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTA 211
Query: 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLG 124
G E + L Y D ++ + + S SF ++ W E N P +++G
Sbjct: 212 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVG 266
Query: 125 NKIDV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETSA 159
K+D+ D + EKK A G + Y E SA
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 17/162 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 69
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKI 127
+ L Y D ++ + + S S++N+ W E + PS P +++G K+
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPE-VRHHCPST----PIILVGTKL 124
Query: 128 DV--DGGNSRVVSEKKARAWCASKG--------NIPYFETSA 159
D+ D + EKK +G ++ Y E SA
Sbjct: 125 DLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 166
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 84/184 (45%), Gaps = 22/184 (11%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKF-------SNQYKATIGADFLTKEVQFEDRLFTLQI 61
L++ +LGD+ GK+SL+++++ + S QYK KE+ + + + I
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK---------KEMLVDGQTHLVLI 58
Query: 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
+ AG + F AD + V+ + SF ++ + L
Sbjct: 59 REEAG-----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQ-LSSLRGEGRGGLALA 112
Query: 122 VLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE 181
++G + + + RVV + +ARA CA Y+ET A G+NV+ FQ +A+ + +
Sbjct: 113 LVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRK 172
Query: 182 EEEI 185
++++
Sbjct: 173 QQQL 176
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 19/146 (13%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGADFLTKEVQFED---RLFTLQIWDT 64
K+ I+G++G GKT+L+ Q K S+ AT+G D +Q D R L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKS-FDNLNNWREEFLIQASPSDPDNFPFVVL 123
AG+E F S F + VYD++ ++ D W +AS S P +++
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-----PVILV 116
Query: 124 GNKIDVDGGNSRVVSEKKARAWCASK 149
G +D VS++K R C SK
Sbjct: 117 GTHLD--------VSDEKQRKACXSK 134
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 19/146 (13%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGADFLTKEVQFED---RLFTLQIWDT 64
K+ I+G++G GKT+L+ Q K S+ AT+G D +Q D R L +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKS-FDNLNNWREEFLIQASPSDPDNFPFVVL 123
AG+E F S F + VYD++ ++ D W +AS S P +++
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-----PVILV 118
Query: 124 GNKIDVDGGNSRVVSEKKARAWCASK 149
G +D VS++K R C SK
Sbjct: 119 GTHLD--------VSDEKQRKACXSK 136
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 36/181 (19%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ D + V + + L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 69 RFQSLGVAFY--------------RG-----ADCCVLVYDVNSMKSFDNLN-NWREEFLI 108
+ L Y RG AD ++ + + S SF+N+ W E
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 109 QASPSDPDNFPFVVLGNKIDV--DGGNSRVVSEKK--------ARAWCASKGNIPYFETS 158
N P +++G K+D+ D + EKK A G + Y E S
Sbjct: 125 HCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 179
Query: 159 A 159
A
Sbjct: 180 A 180
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 7/150 (4%)
Query: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K+SL+ ++V F + Y TI D + + + + TLQI DT G +F ++
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTI-EDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140
+LV+ V S +S + L + ++Q S D P +++GNK D R V +
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIY-KLIVQIKGSVED-IPVMLVGNKCD---ETQREVDTR 134
Query: 141 KARAWCASKGNIPYFETSAKEGINVEEAFQ 170
+A+A A + + ETSAK NV+E FQ
Sbjct: 135 EAQA-VAQEWKCAFMETSAKMNYNVKELFQ 163
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKF-------SNQYKATIGADFLTKEVQFEDRLFTLQI 61
L++ +LGD+ GK+SL+++++ + S QYK KE+ + + + I
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK---------KEMLVDGQTHLVLI 58
Query: 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121
+ AG + F AD + V+ + SF ++ + L
Sbjct: 59 REEAG-----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQ-LSSLRGEGRGGLALA 112
Query: 122 VLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE 181
++G + + + RVV + +ARA A Y+ET A G+NV+ FQ +A+ + +
Sbjct: 113 LVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRK 172
Query: 182 EEEI 185
++++
Sbjct: 173 QQQL 176
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++++GDS GKT+L++ + F Y T+ ++ T + + + L +WDT+G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 88
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEF 106
+ ++ Y +D ++ +D++ ++ D+ L W+ E
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 126
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++++GD GKT+++ + Y T+ ++ T ++ E++ L +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 71
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFL 107
+ ++ Y +D +L +D++ ++ D+ L WR E L
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL 110
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++++GD GKT+++ + Y T+ ++ T ++ E++ L +WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 70
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFL 107
+ ++ Y +D +L +D++ ++ D+ L WR E L
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL 109
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 12/174 (6%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA-TIGADFLTKEVQFEDR---LFTLQIW 62
T +V+++G+ GVGK++L N + S +G D + + + + L +W
Sbjct: 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 64
Query: 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
+ G+ + L + D ++VY + SF+ + R + ++ P ++
Sbjct: 65 ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIIL 119
Query: 123 LGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA 176
+GNK D+ VSE +A CA + + ETSA NV+E F+ I +
Sbjct: 120 VGNKSDLVRCREVSVSEGRA---CAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++++GDS GKT+L++ + F Y T+ ++ T + + + L +WDT+G
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 83
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEF 106
+ ++ Y +D ++ +D++ ++ D+ L W+ E
Sbjct: 84 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 121
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
S + K++++GDS GKT+L++ + F Y T+ ++ T + + + L +W
Sbjct: 2 SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLW 60
Query: 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEF 106
DT+G + ++ Y +D ++ +D++ ++ D+ L W+ E
Sbjct: 61 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 105
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++++GD GKT+++ + Y T+ ++ T ++ E++ L +WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 87
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFL 107
+ ++ Y +D +L +D++ ++ D+ L WR E L
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL 126
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 12/174 (6%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA-TIGADFLTKEVQFEDR---LFTLQIW 62
T +V+++G+ GVGK++L N + S +G D + + + + L +W
Sbjct: 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 95
Query: 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
+ G+ + L + D ++VY + SF+ + R + ++ P ++
Sbjct: 96 ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIIL 150
Query: 123 LGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA 176
+GNK D+ VSE +A CA + + ETSA NV+E F+ I +
Sbjct: 151 VGNKSDLVRCREVSVSEGRA---CAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 12/174 (6%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDR---LFTLQIW 62
T +V+++G+ GVGK++L N + S + +G D + + + + L +W
Sbjct: 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMW 64
Query: 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
+ G+ + L + D ++VY + SF+ + R + ++ P ++
Sbjct: 65 ENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIIL 119
Query: 123 LGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA 176
+GNK D+ VSE +A A + + ETSA NV+E F+ I +
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVF---DCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 12/174 (6%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDR---LFTLQIW 62
T +V+++G+ GVGK++L N + S + +G D + + + + L +W
Sbjct: 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMW 64
Query: 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122
+ G+ + L + D ++VY + SF+ + R + ++ P ++
Sbjct: 65 ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIIL 119
Query: 123 LGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA 176
+GNK D+ VSE +A A + + ETSA NV+E F+ I +
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVF---DXKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+ KV++LG+SGVGK++L + + N ++ D + + + TL ++D Q
Sbjct: 12 VFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 71
Query: 68 ERFQS-LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN-FPFVVLGN 125
L + D ++V+ V +SF + E L++ P + P +++GN
Sbjct: 72 GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV----PETLLRLRAGRPHHDLPVILVGN 127
Query: 126 KIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
K D+ SR VS ++ R + + + ETSA N E F+
Sbjct: 128 KSDL--ARSREVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFE 169
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 22/176 (12%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVN-------KKFSNQYKATIGADFLTKEVQFEDRLFTL 59
++ KV++LG GVGK++L + + + Y +I D E L
Sbjct: 1 SVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVD------GEEASLMVY 54
Query: 60 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119
IW+ G +A D V+VY V SF+ + R + D+ P
Sbjct: 55 DIWEQDGGRWLPGHCMAM---GDAYVIVYSVTDKGSFEKASELRVQL---RRARQTDDVP 108
Query: 120 FVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
+++GNK D+ SR VS + RA CA + + ETSA NV+ F+ + +
Sbjct: 109 IILVGNKSDLV--RSREVSVDEGRA-CAVVFDCKFIETSAALHHNVQALFEGVVRQ 161
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 22/176 (12%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVN-------KKFSNQYKATIGADFLTKEVQFEDRLFTL 59
++ KV++LG GVGK++L + + + Y +I D E L
Sbjct: 6 SVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVD------GEEASLMVY 59
Query: 60 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119
IW+ G +A D V+VY V SF+ + R + D+ P
Sbjct: 60 DIWEQDGGRWLPGHCMAM---GDAYVIVYSVTDKGSFEKASELRVQL---RRARQTDDVP 113
Query: 120 FVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
+++GNK D+ SR VS + RA CA + + ETSA NV+ F+ + +
Sbjct: 114 IILVGNKSDLV--RSREVSVDEGRA-CAVVFDCKFIETSAALHHNVQALFEGVVRQ 166
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 22/176 (12%)
Query: 7 TLLKVIILGDSGVGKTSLMNQYVN-------KKFSNQYKATIGADFLTKEVQFEDRLFTL 59
++ KV++LG GVGK++L + + + Y +I D E L
Sbjct: 6 SVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVD------GEEASLMVY 59
Query: 60 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119
IW+ G +A D V+VY V SF+ + R + D+ P
Sbjct: 60 DIWEQDGGRWLPGHCMAM---GDAYVIVYSVTDKGSFEKASELRVQL---RRARQTDDVP 113
Query: 120 FVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
+++GNK D+ SR VS + RA CA + + ETSA NV+ F+ + +
Sbjct: 114 IILVGNKSDLV--RSREVSVDEGRA-CAVVFDCKFIETSAALHHNVQALFEGVVRQ 166
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 7/176 (3%)
Query: 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
+P + +++ ++G GKT+ +N + +FS T+G F ++V + T++
Sbjct: 15 VPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGN--VTIK 70
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
IWD GQ RF+S+ + RG + V + D + + N L P
Sbjct: 71 IWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLL---DKPQLQGIPV 127
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA 176
+VLGNK D+ +K I + S KE N++ Q + +++
Sbjct: 128 LVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 7/176 (3%)
Query: 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
+P + +++ ++G GKT+ +N + +F+ T+G F +++ + T++
Sbjct: 15 VPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIK 70
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
+WD GQ RF+S+ + RG V + D + + N L P
Sbjct: 71 LWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLL---DKPQLQGIPV 127
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA 176
+VLGNK D+ G +K I + S KE N++ Q + +++
Sbjct: 128 LVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 84/197 (42%), Gaps = 34/197 (17%)
Query: 11 VIILGDSGVGKTSLMNQYVNKKFS--NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++ G VGK+S MN V + S + Y T D + K ++ + + + DT G +
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTT-TDPVYKSMELHP-IGPVTLVDTPGLD 94
Query: 69 RFQSLG--------VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
LG FYR ADC +LV D D++ N +E PF
Sbjct: 95 DVGELGRLRVEKARRVFYR-ADCGILVTDSAPTPYEDDVVNLFKEM----------EIPF 143
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA--LK 178
VV+ NKIDV G + ++ + S+ SA + ++ F I K +
Sbjct: 144 VVVVNKIDVLGEKA-----EELKGLYESRYEAKVLLVSALQ----KKGFDDIGKTISEIL 194
Query: 179 SGEEEEIYLPDTIDVGN 195
G+EE YL D ID G+
Sbjct: 195 PGDEEIPYLGDLIDGGD 211
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 13/173 (7%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G G GKT+++ + K F + VQ+++ FT +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVETVQYKNISFT--VWDVGGQD 55
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
R +SL +YR + + V D N RE + + N ++V NK D
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEA---REVMQRMLNEDELRNAAWLVFANKQD 112
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYF--ETSAKEGINVEEAFQCIAKNALKS 179
+ S +E + S N P+F T A G + E + ++ N+LK+
Sbjct: 113 LPEAMS--AAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLS-NSLKN 162
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 12/169 (7%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G G GKT+++ + K F + VQ+++ FT +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVETVQYKNISFT--VWDVGGQD 72
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
R +SL +YR + + V D N RE + + N ++V NK D
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDRSRIGEA---REVMQRMLNEDELRNAVWLVFANKQD 129
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYF--ETSAKEGINVEEAFQCIAKN 175
+ S +E + S N P+F T A G + E + ++ N
Sbjct: 130 LPEAMS--AAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNN 176
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 13/173 (7%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G G GKT+++ + K F + VQ+++ FT +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVETVQYKNISFT--VWDVGGQD 72
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
R +SL +YR + + V D N RE + + N ++V NK D
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEA---REVMQRMLNEDELRNAAWLVFANKQD 129
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYF--ETSAKEGINVEEAFQCIAKNALKS 179
+ S +E + S N P+F T A G + E + ++ N+LK+
Sbjct: 130 LPEAMS--AAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLS-NSLKN 179
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 7/168 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++ ++G GKT+ +N + +F+ T+G F +++ + T+++WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQP 87
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
RF+S+ + RG V + D + + N L P +VLGNK D
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLL---DKPQLQGIPVLVLGNKRD 144
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA 176
+ G +K I + S KE N++ Q + +++
Sbjct: 145 LPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 192
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 19/170 (11%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTL---QIW-- 62
+ KV+++G+SGVGK++L + + + ++ D + + + TL IW
Sbjct: 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82
Query: 63 -DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN-FPF 120
D G R L + D ++V+ V +SF + E L++ P + P
Sbjct: 83 GDAGGWLRDHCL-----QTGDAFLIVFSVTDRRSFSKV----PETLLRLRAGRPHHDLPV 133
Query: 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
+++GNK D+ SR VS ++ R + + + ETSA N E F+
Sbjct: 134 ILVGNKSDL--ARSREVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFE 180
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+ KV+++G+SGVGK++L + + + ++ D + + + TL ++D Q
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 68 ERFQS-LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN-FPFVVLGN 125
L + D ++V+ V +SF + E L++ P + P +++GN
Sbjct: 62 GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV----PETLLRLRAGRPHHDLPVILVGN 117
Query: 126 KIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170
K D+ SR VS ++ R A + + ETSA N E F+
Sbjct: 118 KSDL--ARSREVSLEEGRH-LAGTLSCKHIETSAALHHNTRELFE 159
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 22/183 (12%)
Query: 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KATIGADFLTKEVQFEDRLFTLQIWDT 64
+T L+V++ G GKT+++NQ + S+++ AT+G + T FE ++D
Sbjct: 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET----FEKGRVAFTVFDM 70
Query: 65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPD-------- 116
G ++F+ L +Y D + V D S D+L + IQA D
Sbjct: 71 GGAKKFRGLWETYYDNIDAVIFVVD-----SSDHLRLCVVKSEIQAMLKHEDIRRELPGG 125
Query: 117 -NFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPY--FETSAKEGINVEEAFQCIA 173
PF+ NK+D G + + G+ P+ F ++ +G V E F +
Sbjct: 126 GRVPFLFFANKMDAAGAKT-AAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQ 184
Query: 174 KNA 176
+ A
Sbjct: 185 ETA 187
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G GKTS++ + + TIG F + V++++ FT +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIVTTI-PTIG--FNVETVEYKNISFT--VWDVGGQD 72
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ + L +Y+ + V D N D + REE + + + N +V NK D
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDR---DRIGEAREELMKMLNEDEMRNAILLVFANKHD 129
Query: 129 VDGGNS-RVVSEK------KARAW-----CASKGNIPY 154
+ S V+EK K R W CA+ G+ Y
Sbjct: 130 LPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLY 167
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G GKT+++ + K F + V+F + FT +WD GQ+
Sbjct: 18 VRILMVGLDAAGKTTILYKV---KLGEVVTTIPTIGFNVETVEFRNISFT--VWDVGGQD 72
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ + L +Y D + V D N + D+ REE + + + +V NK D
Sbjct: 73 KIRPLWRHYYSNTDGLIFVVDSNDRERIDDA---REELHRMINEEELKDAIILVFANKQD 129
Query: 129 VDGGNSRV-VSEK------KARAW-----CASKGNIPY 154
+ S V+EK + R W CA++G+ Y
Sbjct: 130 LPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLY 167
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 18/155 (11%)
Query: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ--- 67
+ ILG G GK++L +++ K+F ++Y + D + E + + L++ DTA
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNL-EDTYSSEETVDHQPVHLRVMDTADLDTP 82
Query: 68 ---ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124
ER+ + AF ++VY V+S +SFD+ +++ E + A + + P ++LG
Sbjct: 83 RNCERYLNWAHAF-------LVVYSVDSRQSFDSSSSYLELLALHAKETQ-RSIPALLLG 134
Query: 125 NKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA 159
NK+D+ R V++ + A G + +FE SA
Sbjct: 135 NKLDM--AQYRQVTKAEGVALAGRFGCL-FFEVSA 166
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++++LG GKT+L+ Q ++ S+ T F K VQ + F L +WD GQ
Sbjct: 18 VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQSQG--FKLNVWDIGGQR 72
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFD 97
+ + +++ D + V D K F+
Sbjct: 73 KIRPYWRSYFENTDILIYVIDSADRKRFE 101
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++++LG GKT+L+ Q ++ S+ T F K VQ + F L +WD GQ
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQSQG--FKLNVWDIGGQR 71
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFD 97
+ + +++ D + V D K F+
Sbjct: 72 KIRPYWRSYFENTDILIYVIDSADRKRFE 100
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
KVII+G GKT+++ Q++ + + TIG++ +E+ ++ F + WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHT-SPTIGSN--VEEIVVKNTHFLM--WDIGGQES 72
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFD--NLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
+S +Y + +LV D S D L +EE + D ++ NK
Sbjct: 73 LRSSWNTYYSNTEFIILVVD-----SIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQ 127
Query: 128 DVDG 131
D+ G
Sbjct: 128 DMKG 131
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 20/130 (15%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV----------QFEDRLFT 58
+KV ++GD GKTSL+ Q + + F + T G + +TK+ + ++ LF
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLF- 100
Query: 59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNF 118
WD GQE + F + +L+ D ++ N + W S
Sbjct: 101 -HFWDFGGQEIMHASHQFFMTRSSVYMLLLD---SRTDSNKHYWLRHIEKYGGKS----- 151
Query: 119 PFVVLGNKID 128
P +V+ NKID
Sbjct: 152 PVIVVMNKID 161
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
L++++LG GKT+++ ++ N + + T+G + T E R F L IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKF-NGEDIDTISPTLGFNIKT----LEHRGFKLNIWDVGGQK 71
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+S ++ D + V D + + + L++ + ++ NK D
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQD 128
Query: 129 VDGGNS----RVVSEK---KARAWC 146
+ G S R V E ++ WC
Sbjct: 129 LPGALSSNAIREVLELDSIRSHHWC 153
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++++LG GKT+L+ Q ++ S+ T F K VQ + F L +WD GQ
Sbjct: 5 VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQSQG--FKLNVWDIGGQR 59
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFD 97
+ + +++ D + V D K F+
Sbjct: 60 KIRPYWRSYFENTDILIYVIDSADRKRFE 88
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 23/178 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++ILG G GKT+++ + + TIG F + V +++ F Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG--FNVETVTYKNLKF--QVWDLGGQT 57
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ +Y D + V D D + + E + + VV NK D
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVDSCDR---DRIGISKSELVAMLEEEELRKAILVVFANKQD 114
Query: 129 VDG-------GNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
++ N+ + K R W F+TSA +G ++EA + + + LKS
Sbjct: 115 MEQAMTPSEMANALGLPALKDRKW-------QIFKTSATKGTGLDEAMEWLVET-LKS 164
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 70/184 (38%), Gaps = 51/184 (27%)
Query: 11 VIILGDSGVGKTSLMNQY----VNKKFSNQYKATIGA-------------DFLTKEVQFE 53
V +LG GKT+L++ V + + IGA DFL K+
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFL-KKFSIR 66
Query: 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN------SMKSFDNLNNWREEFL 107
+ L L DT G E F +L AD +L+ D+N + ++ + L +R
Sbjct: 67 ETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRT--- 123
Query: 108 IQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167
PFVV NKID + W +G P+ ET +K+ I V++
Sbjct: 124 -----------PFVVAANKID------------RIHGWRVHEGR-PFMETFSKQDIQVQQ 159
Query: 168 AFQC 171
Sbjct: 160 KLDT 163
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 70/184 (38%), Gaps = 51/184 (27%)
Query: 11 VIILGDSGVGKTSLMNQY----VNKKFSNQYKATIGA-------------DFLTKEVQFE 53
V +LG GKT+L++ V + + IGA DFL K+
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPXDVIEGICGDFL-KKFSIR 66
Query: 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN------SMKSFDNLNNWREEFL 107
+ L L DT G E F +L AD +L+ D+N + ++ + L +R
Sbjct: 67 ETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYRT--- 123
Query: 108 IQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167
PFVV NKID + W +G P+ ET +K+ I V++
Sbjct: 124 -----------PFVVAANKID------------RIHGWRVHEGR-PFXETFSKQDIQVQQ 159
Query: 168 AFQC 171
Sbjct: 160 KLDT 163
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
L++++LG GKT+++ ++ N + + T+G + T E R F L IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+S ++ D + V D + + + L++ + ++ NK D
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQD 130
Query: 129 VDGGNS 134
+ G S
Sbjct: 131 LPGALS 136
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
L++++LG GKT+++ ++ N + + T+G + T E R F L IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+S ++ D + V D + + + L++ + ++ NK D
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQD 130
Query: 129 VDGGNS 134
+ G S
Sbjct: 131 LPGALS 136
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G GKT+++ + + TIG F + V++++ FT +WD GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKNISFT--VWDVGGQD 220
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ + L +++ + V D N + +N REE + + + + +V NK D
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 277
Query: 129 V-DGGNSRVVSEK------KARAW-----CASKGNIPY 154
+ + N+ +++K + R W CA+ G+ Y
Sbjct: 278 LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G GKT+++ + + TIG F + V++++ FT +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKNISFT--VWDVGGQD 55
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ + L +++ + V D N + +N REE + + + + +V NK D
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 112
Query: 129 V-DGGNSRVVSEK------KARAW-----CASKGNIPY 154
+ + N+ +++K + R W CA+ G+ Y
Sbjct: 113 LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 150
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G GKT+++ + + TIG F + V++++ FT +WD GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKNISFT--VWDVGGQD 71
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ + L +++ + V D N + +N REE + + + + +V NK D
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 128
Query: 129 V-DGGNSRVVSEK------KARAW-----CASKGNIPY 154
+ + N+ +++K + R W CA+ G+ Y
Sbjct: 129 LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 166
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G GKT+++ + + TIG F + V++++ FT +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKNISFT--VWDVGGQD 72
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ + L +++ + V D N + +N REE + + + + +V NK D
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 129
Query: 129 V-DGGNSRVVSEK------KARAW-----CASKGNIPY 154
+ + N+ +++K + R W CA+ G+ Y
Sbjct: 130 LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 167
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
KVII+G GKT+++ Q+ + + TIG++ +E+ + F + WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINNTRFLM--WDIGGQES 78
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
+S +Y + ++V D + ++ REE + D ++ NK DV
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQDV 135
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
KVII+G GKT+++ Q+ + + TIG++ +E+ + F + WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINNTRFLM--WDIGGQES 77
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
+S +Y + ++V D + ++ REE + D ++ NK DV
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
KVII+G GKT+++ Q+ + + TIG++ +E+ + F + WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINNTRFLM--WDIGGQES 72
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
+S +Y + ++V D + ++ REE + D ++ NK DV
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
KVII+G GKT+++ Q+ + + TIG++ +E+ + F + WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINNTRFLM--WDIGGQES 72
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
+S +Y + ++V D + ++ REE + D ++ NK DV
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 23/178 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++ILG G GKT+++ + + TIG F + V +++ F Q+WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG--FNVETVTYKNLKF--QVWDLGGLT 59
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ +Y D + V D D + + E + + VV NK D
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVDSCDR---DRIGISKSELVAMLEEEELRKAILVVFANKQD 116
Query: 129 VDG-------GNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
++ NS + K R W F+TSA +G ++EA + + + LKS
Sbjct: 117 MEQAMTSSEMANSLGLPALKDRKW-------QIFKTSATKGTGLDEAMEWLVET-LKS 166
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 13/173 (7%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G G GKT+++ + K F + VQ+ + FT +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVECVQYCNISFT--VWDVGGQD 72
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
R +SL +Y + + V D N RE + + N ++V NK D
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVDSNDRSRIGEA---REVMQRMLNEDELCNAAWLVFANKQD 129
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYF--ETSAKEGINVEEAFQCIAKNALKS 179
+ S +E + S N P+F T A G + E + ++ N LK+
Sbjct: 130 LPEAMS--AAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLS-NCLKN 179
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++++LG GKT+L+ Q ++ S+ T F K VQ + F L +WD G
Sbjct: 5 VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQSQG--FKLNVWDIGGLR 59
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFD 97
+ + +++ D + V D K F+
Sbjct: 60 KIRPYWRSYFENTDILIYVIDSADRKRFE 88
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+L++++LG GKT+++ ++ N + + T+G + T E R F L IWD G
Sbjct: 1 MLRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKT----LEHRGFKLNIWDVGGL 55
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
+ +S ++ D + V D + + + L++ + ++ NK
Sbjct: 56 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQ 112
Query: 128 DVDGGNS 134
D+ G S
Sbjct: 113 DLPGALS 119
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G GKT+++ + + TIG F + V++++ FT +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKNICFT--VWDVGGQD 84
Query: 69 RFQSLGVAFYRGADCCVLVYDVNS----MKSFDNLNNWREE-------FLIQASPSD-PD 116
+ + L +++ + V D N +S D L +E L+ A+ D P+
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144
Query: 117 NFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPY 154
P L +K+ + SR +A CA++G Y
Sbjct: 145 AMPVSELTDKLGLQHLRSRTWY---VQATCATQGTGLY 179
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 16/132 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAG- 66
+KV+I G GK+SL+N ++ + A D L + + + L I DTAG
Sbjct: 8 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGL 65
Query: 67 ---QERFQSLGVAF----YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119
+ + +G+ AD + + D + + D W EF+ + P P
Sbjct: 66 REASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIW-PEFIARL----PAKLP 120
Query: 120 FVVLGNKIDVDG 131
V+ NK D+ G
Sbjct: 121 ITVVRNKADITG 132
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 15/145 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
L+++ILG G GKT+++ + + K TIG F + + +++ L +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVETLSYKN--LKLNVWDLGGQT 73
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ +Y AD +++ V+S D ++ +E + + + +V NK D
Sbjct: 74 SIRPYWRCYY--ADTAAVIFVVDSTDK-DRMSTASKELHLMLQEEELQDAALLVFANKQD 130
Query: 129 VDGGNSRV-------VSEKKARAWC 146
G S + E K R+W
Sbjct: 131 QPGALSASEVSKELNLVELKDRSWS 155
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 16/132 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAG- 66
+KV+I G GK+SL+N ++ + A D L + + + L I DTAG
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGL 62
Query: 67 ---QERFQSLGVAF----YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119
+ + +G+ AD + + D + + D W EF+ + P P
Sbjct: 63 REASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIW-PEFIARL----PAKLP 117
Query: 120 FVVLGNKIDVDG 131
V+ NK D+ G
Sbjct: 118 ITVVRNKADITG 129
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 75/167 (44%), Gaps = 12/167 (7%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G GKT+++ + + TIG F + V++++ FT +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKNICFT--VWDVGGQD 72
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
R + L +++ + V D N + + + ++ L+ D ++ NK D
Sbjct: 73 RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDA---VLLLFANKQD 129
Query: 129 VDGGNSRVVSEKKARAWCASKGNIPYF--ETSAKEGINVEEAFQCIA 173
+ N+ +SE + S N ++ T A +G + E ++
Sbjct: 130 LP--NAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLS 174
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 65/158 (41%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++++LG GKT+++ + K F + V +++ F +WD GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKNVKF--NVWDVGGQD 377
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ + L +Y G + V D D ++ R+E + + + ++ NK D
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDC---ADRDRIDEARQELHRIINDREMRDAIILIFANKQD 434
Query: 129 V-DGGNSRVVSEK------KARAW-----CASKGNIPY 154
+ D + EK + R W CA+ G+ Y
Sbjct: 435 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 11/130 (8%)
Query: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
V I+G GKT+L++ + K + Q I +V D+ T DT G E F
Sbjct: 11 VTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITF--LDTPGHEAF 68
Query: 71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130
++ + D +LV + D + E + A + N P +V NK+D
Sbjct: 69 TTMRARGAQVTDIVILVVAAD-----DGVMPQTVEAINHAKAA---NVPIIVAINKMDKP 120
Query: 131 GGNS-RVVSE 139
N RV+ E
Sbjct: 121 EANPDRVMQE 130
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 65/158 (41%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++++LG GKT+++ + K F + V +++ F +WD GQ+
Sbjct: 14 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKNVKF--NVWDVGGQD 68
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ + L +Y G + V D D ++ R+E + + + ++ NK D
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 125
Query: 129 V-DGGNSRVVSEK------KARAW-----CASKGNIPY 154
+ D + EK + R W CA+ G+ Y
Sbjct: 126 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 163
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 65/158 (41%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++++LG GKT+++ + K F + V +++ F +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKNVKF--NVWDVGGQD 67
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ + L +Y G + V D D ++ R+E + + + ++ NK D
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 124
Query: 129 V-DGGNSRVVSEK------KARAW-----CASKGNIPY 154
+ D + EK + R W CA+ G+ Y
Sbjct: 125 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 162
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 65/158 (41%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++++LG GKT+++ + K F + V +++ F +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKNVKF--NVWDVGGQD 55
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ + L +Y G + V D D ++ R+E + + + ++ NK D
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 112
Query: 129 V-DGGNSRVVSEK------KARAW-----CASKGNIPY 154
+ D + EK + R W CA+ G+ Y
Sbjct: 113 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 150
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 65/158 (41%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++++LG GKT+++ + K F + V +++ F +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKNVKF--NVWDVGGQD 55
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ + L +Y G + V D D ++ R+E + + + ++ NK D
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 112
Query: 129 V-DGGNSRVVSEK------KARAW-----CASKGNIPY 154
+ D + EK + R W CA+ G+ Y
Sbjct: 113 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 150
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 22/168 (13%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++ LG GKT+L++ + + Q+ T+ ++E+ FT +D G E+
Sbjct: 37 KLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAGMTFT--TFDLGGHEQ 91
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
+ + + + V + D L + E + N P ++LGNKID
Sbjct: 92 ARRVWKNYLPAINGIVFLVDC---ADHSRLVESKVELNALMTDETISNVPILILGNKID- 147
Query: 130 DGGNSRVVSEKKAR------AWCASKGNIPYFETSAKEGINVEEAFQC 171
+ +SE+K R KGN+ E +A+ E F C
Sbjct: 148 ---RTDAISEEKLREIFGLYGQTTGKGNVTLKELNARP----MEVFMC 188
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G GKT+++ + + TIG F + V++++ FT +WD GQ+
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKNISFT--VWDVGGQD 75
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ + L +++ + V D N D + R+E + + + +V NK D
Sbjct: 76 KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 132
Query: 129 V-DGGNSRVVSEK------KARAW-----CASKGNIPY 154
+ + N+ +++K + R W CA+ G Y
Sbjct: 133 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 170
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 21/165 (12%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
K++ LG GKT+L++ N + + + T ++E+ + FT +D G
Sbjct: 25 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT------SEELAIGNIKFT--TFDLGG 76
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126
+ + L ++ + V + D + FD R E + ++ + PFV+LGNK
Sbjct: 77 HIQARRLWKDYFPEVNGIVFLVDAADPERFDEA---RVELDALFNIAELKDVPFVILGNK 133
Query: 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQC 171
ID VSE + R ++ G + + EG E F C
Sbjct: 134 IDA----PNAVSEAELR---SALGLLNTTGSQRIEGQRPVEVFMC 171
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 19/164 (11%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF--LTKEVQFEDRLFTLQIWDTAGQ 67
K++ LG GKT+L++ N + AT+ + ++E+ + FT +D G
Sbjct: 3 KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFT--TFDLGGH 55
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127
+ + L ++ + V + D + FD R E + ++ + PFV+LGNKI
Sbjct: 56 IQARRLWKDYFPEVNGIVFLVDAADPERFDEA---RVELDALFNIAELKDVPFVILGNKI 112
Query: 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQC 171
D VSE + R ++ G + + EG E F C
Sbjct: 113 DA----PNAVSEAELR---SALGLLNTTGSQRIEGQRPVEVFMC 149
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 20/157 (12%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
+++ LG GKT+++ + K F + V +++ F +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKNVKF--NVWDVGGQDK 56
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
+ L +Y G + V D D ++ R+E + + + ++ NK D+
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREXRDAIILIFANKQDL 113
Query: 130 -DGGNSRVVSEK------KARAW-----CASKGNIPY 154
D + EK + R W CA+ G+ Y
Sbjct: 114 PDAXKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 150
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 16/131 (12%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAG-- 66
KV+I G GK+SL+N ++ + A D L + + + L I DTAG
Sbjct: 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--XPLHIIDTAGLR 63
Query: 67 --QERFQSLGVAF----YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120
+ + +G+ AD + D + + D W EF+ + P P
Sbjct: 64 EASDEVERIGIERAWQEIEQADRVLFXVDGTTTDAVDPAEIW-PEFIARL----PAKLPI 118
Query: 121 VVLGNKIDVDG 131
V+ NK D+ G
Sbjct: 119 TVVRNKADITG 129
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Query: 20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR 79
GKT+++ ++ N + + T+G + T E R F L IWD GQ+ +S ++
Sbjct: 30 GKTTILKKF-NGEDVDTISPTLGFNIKT----LEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS 134
D + V D + + + L++ + ++ NK D+ G S
Sbjct: 85 STDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGA---TLLIFANKQDLPGALS 136
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++++LG GKT+++ + K F + V +++ F +WD G +
Sbjct: 3 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKNVKF--NVWDVGGLD 57
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ + L +Y G + V D D ++ R+E + + + ++ NK D
Sbjct: 58 KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 114
Query: 129 V-DGGNSRVVSEK------KARAW-----CASKGNIPY 154
+ D + EK + R W CA+ G+ Y
Sbjct: 115 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 152
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++++LG GKT+++ + K F + V +++ F +WD G +
Sbjct: 4 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKNVKF--NVWDVGGLD 58
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ + L +Y G + V D D ++ R+E + + + ++ NK D
Sbjct: 59 KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 115
Query: 129 V-DGGNSRVVSEK------KARAW-----CASKGNIPY 154
+ D + EK + R W CA+ G+ Y
Sbjct: 116 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 153
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 33.1 bits (74), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++++LG GKT+++ + K F + V +++ F +WD G +
Sbjct: 14 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKNVKF--NVWDVGGLD 68
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128
+ + L +Y G + V D D ++ R+E + + + ++ NK D
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 125
Query: 129 V-DGGNSRVVSEK------KARAW-----CASKGNIPY 154
+ D + EK + R W CA+ G+ Y
Sbjct: 126 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 163
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 31/180 (17%)
Query: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV---QFEDRLFTLQIWDTAG- 66
V+I G VGK++L+ K + F T+ + QFED F QI DT G
Sbjct: 170 VVIAGHPNVGKSTLL-----KALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGL 224
Query: 67 -----QER----FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEF-LIQASPSDPD 116
ER Q++ Y G + + ++D + F E+ L + +
Sbjct: 225 LDRPISERNEIEKQAILALRYLG-NLIIYIFDPSEHCGFP----LEEQIHLFEEVHGEFK 279
Query: 117 NFPFVVLGNKIDV-DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175
+ PF+V+ NKIDV D N K+ + KG P + SA +G ++ + I K
Sbjct: 280 DLPFLVVINKIDVADEENI-----KRLEKFVKEKGLNP-IKISALKGTGIDLVKEEIIKT 333
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 21/153 (13%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+ V+ LG GKT+++N+ K SN I +F+ + ++D +GQ
Sbjct: 22 VHVLCLGLDNSGKTTIINKL---KPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQG 78
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPD----NFPFVVLG 124
R+++L +Y+ + V D S D L + + + PD P +
Sbjct: 79 RYRNLWEHYYKEGQAIIFVID-----SSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFA 133
Query: 125 NKIDV-DGGNSRVVSEK------KARAW--CAS 148
NK+D+ D S VS+ K + W CAS
Sbjct: 134 NKMDLRDAVTSVKVSQLLCLENIKDKPWHICAS 166
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 31/138 (22%)
Query: 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF--LTKEVQFEDRLFT----L 59
RT LKV I+G VGK+SL+N + +Q I D T++V E +L +
Sbjct: 222 RTGLKVAIVGRPNVGKSSLLNAW------SQSDRAIVTDLPGTTRDV-VESQLVVGGIPV 274
Query: 60 QIWDTAG----QERFQSLGVAFYR-GADCCVLVYDVNSMKSFDNLNNWR---EEFLIQAS 111
Q+ DTAG ++ + +GV R A+ LV + + D W +E Q
Sbjct: 275 QVLDTAGIRETSDQVEKIGVERSRQAANTADLV-----LLTIDAATGWTTGDQEIYEQVK 329
Query: 112 PSDPDNFPFVVLGNKIDV 129
+ P +++ NKID+
Sbjct: 330 -----HRPLILVMNKIDL 342
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 23/177 (12%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
+++ILG G GKT+++ + + TIG F + V +++ F Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVVTTI-PTIG--FNVETVTYKNLKF--QVWDLGGLTS 63
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
+ +Y D + V D D + + E + + VV NK D
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDSCDR---DRIGISKSELVAXLEEEELRKAILVVFANKQDX 120
Query: 130 -------DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179
+ NS + K R W F+TSA +G ++EA + + + LKS
Sbjct: 121 EQAXTSSEXANSLGLPALKDRKW-------QIFKTSATKGTGLDEAXEWLVET-LKS 169
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Query: 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA--DFLTKEVQFEDRLFT 58
M S R K++++G SG GK+S M + +S +GA D ++F + T
Sbjct: 1 MSSNNRK--KLLLMGRSGSGKSS-MRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNM-T 56
Query: 59 LQIWDTAGQERFQSLGVA-----FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 113
L +WD GQ+ F ++ + V+DV S + ++ + + L Q
Sbjct: 57 LNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKA-LKQLRKY 115
Query: 114 DPDNFPFVVLGNKIDV 129
PD FV+L +K+D+
Sbjct: 116 SPDAKIFVLL-HKMDL 130
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 9 LKVIILGDSGVGKTSLMNQYVN--KKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
L+++I+G VGK++L+N+ +N + T D +++E+ LF +I DTAG
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTT-RDVISEEIVIRGILF--RIVDTAG 300
Query: 67 -----QERFQSLGVAF----YRGADCCVLVYDVNS 92
+ + LG+ AD + V D +S
Sbjct: 301 VRSETNDLVERLGIERTLQEIEKADIVLFVLDASS 335
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 22/168 (13%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++ LG GKT+L++ + + Q+ T+ ++E+ FT +D G +
Sbjct: 24 KLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPT--SEELTIAGMTFT--TFDLGGHIQ 78
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
+ + + + V + D + L +EE + N P ++LGNKID
Sbjct: 79 ARRVWKNYLPAINGIVFLVDC---ADHERLLESKEELDSLMTDETIANVPILILGNKID- 134
Query: 130 DGGNSRVVSEKKAR------AWCASKGNIPYFETSAKEGINVEEAFQC 171
+SE++ R KG++ E +A+ E F C
Sbjct: 135 ---RPEAISEERLREMFGLYGQTTGKGSVSLKELNARP----LEVFMC 175
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 119 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174
P VV+ K D G R + + A + SK N+ ETSA+ +NV+ AF + +
Sbjct: 200 PIVVVLTK--CDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 17/158 (10%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++ LG GKT+L++ + + Q+ T+ ++E+ FT +D G +
Sbjct: 27 KLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPT--SEELTIAGMTFT--TFDLGGHIQ 81
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
+ + + + V + D + L +EE + N P ++LGNKID
Sbjct: 82 ARRVWKNYLPAINGIVFLVDC---ADHERLLESKEELDSLMTDETIANVPILILGNKID- 137
Query: 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167
+SE++ R G +T+ K ++++E
Sbjct: 138 ---RPEAISEERLREMFGLYG-----QTTGKGSVSLKE 167
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 22/168 (13%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++ LG GKT+L++ + + Q+ T+ ++E+ FT +D G +
Sbjct: 18 KLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPT--SEELTIAGMTFT--TFDLGGGIQ 72
Query: 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129
+ + + + V + D + L +EE + N P ++LGNKID
Sbjct: 73 ARRVWKNYLPAINGIVFLVDC---ADHERLLESKEELDSLMTDETIANVPILILGNKID- 128
Query: 130 DGGNSRVVSEKKAR------AWCASKGNIPYFETSAKEGINVEEAFQC 171
+SE++ R KG++ E +A+ E F C
Sbjct: 129 ---RPEAISEERLREMFGLYGQTTGKGSVSLKELNARP----LEVFMC 169
>pdb|2HIV|A Chain A, Atp-Dependent Dna Ligase From S. Solfataricus
pdb|2HIX|A Chain A, Atp Dependent Dna Ligase From S. Solfataricus Bound To Atp
Length = 621
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 140 KKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE 181
++ ++ S G + + T++KE + V+E + ++K AL +GE
Sbjct: 116 RRLKSKQQSTGILGFLGTTSKESLTVDEVYSTLSKVALTTGE 157
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The
P21-Like Triphosphate And Mg2+ Binding Site
Length = 128
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
LK +++G+ G GK+++ N F+N A G D L K +Q F + W+ +
Sbjct: 5 LKFLVVGNGGTGKSTVRNLLKELGFNNVEDAEDGVDALNK-LQAGGYGFVISDWNMPNMD 63
Query: 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNL 99
+ L GA + V V + +N+
Sbjct: 64 GLELLKTIRADGAMSALPVLMVTAEAKKENI 94
>pdb|1YE8|A Chain A, Crystal Structure Of Thep1 From The Hyperthermophile
Aquifex Aeolicus
Length = 178
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 10 KVIILGDSGVGKTSLMNQYVNK 31
K+II G+ GVGKT+L+ + V +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVER 23
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 28.1 bits (61), Expect = 3.8, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY------KATIGADFLTK-EVQFEDRL 56
RRT +++G+ GVGKT++ + +N+ K + D TK +FEDRL
Sbjct: 198 RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRL 256
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 10 KVIILGDS----GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65
KV++ G + G K NQ+ + K G T +QF + + DT
Sbjct: 32 KVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQR-GISITTSVMQFPYHDCLVNLLDTP 90
Query: 66 GQERFQSLGVAFYRGADCCVLVYD 89
G E F DCC++V D
Sbjct: 91 GHEDFSEDTYRTLTAVDCCLMVID 114
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 10 KVIILGDS----GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65
KV++ G + G K NQ+ + K G T +QF + + DT
Sbjct: 32 KVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQR-GISITTSVMQFPYHDCLVNLLDTP 90
Query: 66 GQERFQSLGVAFYRGADCCVLVYD 89
G E F DCC++V D
Sbjct: 91 GHEDFSEDTYRTLTAVDCCLMVID 114
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY------KATIGADFLTK-EVQFEDRL 56
RRT +++G+ GVGKT++ + +N+ K + D TK +FEDRL
Sbjct: 198 RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRL 256
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 11 VIILGDSGVGKTSLMNQYVNKKFSNQ 36
++ +G++G+GK++LM+ N KF +
Sbjct: 45 ILCVGETGLGKSTLMDTLFNTKFEGE 70
>pdb|4B4T|V Chain V, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 306
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 50 VQFEDRLFTLQIWDTAGQERFQSLGVAFYR---GADCCVLVYDVNSMKSFDNLNN 101
V+ D +F ++ D Q + V +Y G C + DVN+ KSF+ LN+
Sbjct: 80 VEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNS 134
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of
Enga From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of
Enga From Thermus Thermophilus Hb8
Length = 161
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 10 KVIILGDSGVGKTSLMNQYVNKK 32
KV+I+G VGK+SL N+ + K+
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKR 25
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,062,678
Number of Sequences: 62578
Number of extensions: 249360
Number of successful extensions: 1584
Number of sequences better than 100.0: 378
Number of HSP's better than 100.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 822
Number of HSP's gapped (non-prelim): 384
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)