Query 028647
Match_columns 206
No_of_seqs 150 out of 1818
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 14:47:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028647.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028647hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 2.7E-42 5.8E-47 234.9 21.0 199 1-206 2-205 (205)
2 KOG0394 Ras-related GTPase [Ge 100.0 1.3E-41 2.8E-46 228.6 18.4 206 1-206 1-210 (210)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 2.2E-40 4.7E-45 224.7 19.5 194 6-206 3-200 (200)
4 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.6E-37 3.4E-42 211.0 19.7 175 7-187 21-195 (221)
5 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4.5E-37 9.7E-42 221.2 23.0 195 9-206 1-201 (201)
6 KOG0078 GTP-binding protein SE 100.0 1.2E-36 2.6E-41 210.2 21.5 174 4-184 8-181 (207)
7 KOG0080 GTPase Rab18, small G 100.0 1.3E-36 2.8E-41 200.1 18.7 183 6-194 9-192 (209)
8 cd04121 Rab40 Rab40 subfamily. 100.0 1.7E-35 3.7E-40 209.9 22.9 172 6-185 4-175 (189)
9 cd04112 Rab26 Rab26 subfamily. 100.0 2E-35 4.2E-40 211.0 22.7 190 9-206 1-191 (191)
10 cd04120 Rab12 Rab12 subfamily. 100.0 2.1E-35 4.5E-40 211.3 22.0 168 9-182 1-168 (202)
11 KOG0098 GTPase Rab2, small G p 100.0 1.1E-35 2.3E-40 200.5 18.0 173 5-184 3-175 (216)
12 cd04144 Ras2 Ras2 subfamily. 100.0 6.9E-35 1.5E-39 208.0 21.4 188 10-206 1-188 (190)
13 cd04118 Rab24 Rab24 subfamily. 100.0 2E-34 4.3E-39 206.3 23.5 190 9-206 1-193 (193)
14 cd04111 Rab39 Rab39 subfamily. 100.0 2.2E-34 4.9E-39 208.1 23.0 171 8-184 2-173 (211)
15 PLN03110 Rab GTPase; Provision 100.0 3.4E-34 7.3E-39 208.0 23.4 169 6-181 10-178 (216)
16 KOG0087 GTPase Rab11/YPT3, sma 100.0 9E-35 1.9E-39 200.1 18.4 173 4-183 10-182 (222)
17 cd04110 Rab35 Rab35 subfamily. 100.0 5.4E-34 1.2E-38 204.7 23.2 192 6-206 4-199 (199)
18 KOG0079 GTP-binding protein H- 100.0 1.5E-35 3.3E-40 192.5 13.3 167 6-180 6-172 (198)
19 cd04109 Rab28 Rab28 subfamily. 100.0 9.7E-34 2.1E-38 205.7 23.1 167 9-179 1-168 (215)
20 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 4.8E-34 1E-38 201.6 20.9 168 5-178 2-181 (182)
21 KOG0086 GTPase Rab4, small G p 100.0 1E-34 2.2E-39 189.7 15.6 181 1-188 2-182 (214)
22 cd04122 Rab14 Rab14 subfamily. 100.0 1E-33 2.2E-38 198.0 21.9 164 8-178 2-165 (166)
23 cd04126 Rab20 Rab20 subfamily. 100.0 6.4E-34 1.4E-38 205.8 21.3 187 9-206 1-220 (220)
24 cd04125 RabA_like RabA-like su 100.0 2.1E-33 4.5E-38 200.2 22.9 170 9-185 1-170 (188)
25 cd01867 Rab8_Rab10_Rab13_like 100.0 1.6E-33 3.4E-38 197.2 21.8 165 7-178 2-166 (167)
26 cd04133 Rop_like Rop subfamily 100.0 1.1E-33 2.4E-38 198.6 20.7 163 9-177 2-173 (176)
27 KOG0091 GTPase Rab39, small G 100.0 3E-34 6.6E-39 189.5 15.6 181 4-189 4-185 (213)
28 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.4E-33 5.2E-38 196.9 21.2 167 8-181 2-168 (172)
29 cd01875 RhoG RhoG subfamily. 100.0 3.3E-33 7.1E-38 199.4 21.3 165 8-178 3-178 (191)
30 cd04131 Rnd Rnd subfamily. Th 100.0 3.3E-33 7.1E-38 196.9 20.7 163 9-177 2-176 (178)
31 cd01865 Rab3 Rab3 subfamily. 100.0 7.4E-33 1.6E-37 193.4 22.1 163 9-178 2-164 (165)
32 cd04127 Rab27A Rab27a subfamil 100.0 5.5E-33 1.2E-37 196.7 21.6 167 7-179 3-179 (180)
33 cd04116 Rab9 Rab9 subfamily. 100.0 6.4E-33 1.4E-37 194.6 21.8 167 6-175 3-169 (170)
34 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 6.7E-33 1.4E-37 201.6 22.3 171 4-180 9-191 (232)
35 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 8.3E-33 1.8E-37 193.4 21.8 164 8-178 2-165 (166)
36 KOG0093 GTPase Rab3, small G p 100.0 9.1E-34 2E-38 184.0 15.4 170 6-182 19-188 (193)
37 PTZ00369 Ras-like protein; Pro 100.0 5.5E-33 1.2E-37 198.1 21.0 169 7-182 4-172 (189)
38 cd01864 Rab19 Rab19 subfamily. 100.0 8.7E-33 1.9E-37 193.1 21.2 163 7-175 2-164 (165)
39 cd04117 Rab15 Rab15 subfamily. 100.0 7.6E-33 1.7E-37 192.5 20.6 160 9-175 1-160 (161)
40 cd01868 Rab11_like Rab11-like. 100.0 1.2E-32 2.7E-37 192.3 21.4 163 7-176 2-164 (165)
41 cd04119 RJL RJL (RabJ-Like) su 100.0 1.1E-32 2.3E-37 193.0 21.2 166 9-177 1-167 (168)
42 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.5E-32 3.4E-37 192.5 21.9 165 10-178 2-166 (170)
43 cd01874 Cdc42 Cdc42 subfamily. 100.0 6.5E-33 1.4E-37 195.2 20.0 162 9-176 2-174 (175)
44 PLN03108 Rab family protein; P 100.0 3.1E-32 6.7E-37 197.0 23.8 169 6-181 4-172 (210)
45 KOG0095 GTPase Rab30, small G 100.0 2.2E-33 4.8E-38 182.9 15.7 175 4-185 3-177 (213)
46 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.5E-32 3.2E-37 194.4 21.2 164 9-178 1-167 (182)
47 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.5E-32 5.4E-37 197.6 22.7 171 9-185 2-184 (222)
48 PLN03118 Rab family protein; P 100.0 4.4E-32 9.5E-37 196.6 23.9 171 4-181 10-181 (211)
49 cd04136 Rap_like Rap-like subf 100.0 1.5E-32 3.3E-37 191.4 20.2 161 9-176 2-162 (163)
50 cd04132 Rho4_like Rho4-like su 100.0 1.8E-32 3.9E-37 195.2 21.0 169 9-183 1-173 (187)
51 cd01866 Rab2 Rab2 subfamily. 100.0 3.8E-32 8.3E-37 190.3 22.2 165 7-178 3-167 (168)
52 PLN03071 GTP-binding nuclear p 100.0 2.2E-32 4.7E-37 198.8 21.5 165 6-180 11-175 (219)
53 cd04175 Rap1 Rap1 subgroup. T 100.0 2.8E-32 6E-37 190.3 20.6 163 8-177 1-163 (164)
54 cd01862 Rab7 Rab7 subfamily. 100.0 7.8E-32 1.7E-36 189.4 22.3 170 9-180 1-170 (172)
55 cd04106 Rab23_lke Rab23-like s 100.0 5E-32 1.1E-36 188.6 20.5 159 9-175 1-161 (162)
56 cd04124 RabL2 RabL2 subfamily. 100.0 7.4E-32 1.6E-36 187.6 21.2 161 9-180 1-161 (161)
57 cd04113 Rab4 Rab4 subfamily. 100.0 5.1E-32 1.1E-36 188.4 20.3 160 9-175 1-160 (161)
58 smart00175 RAB Rab subfamily o 100.0 1E-31 2.2E-36 187.3 21.4 163 9-178 1-163 (164)
59 PF00071 Ras: Ras family; Int 100.0 6.2E-32 1.3E-36 188.2 20.0 161 10-177 1-161 (162)
60 cd01871 Rac1_like Rac1-like su 100.0 6.2E-32 1.4E-36 190.0 20.0 161 9-175 2-173 (174)
61 cd04142 RRP22 RRP22 subfamily. 100.0 5.9E-32 1.3E-36 193.5 20.2 175 9-186 1-183 (198)
62 cd00877 Ran Ran (Ras-related n 100.0 1.2E-31 2.6E-36 187.4 21.2 160 9-178 1-160 (166)
63 smart00173 RAS Ras subfamily o 100.0 1E-31 2.2E-36 187.5 20.7 162 9-177 1-162 (164)
64 cd04134 Rho3 Rho3 subfamily. 100.0 1.3E-31 2.8E-36 191.0 20.5 166 9-180 1-177 (189)
65 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.9E-31 4.2E-36 185.5 20.8 160 9-176 2-161 (162)
66 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2.3E-31 4.9E-36 185.6 21.1 162 8-176 2-163 (164)
67 cd04176 Rap2 Rap2 subgroup. T 100.0 1.5E-31 3.2E-36 186.5 20.1 161 9-176 2-162 (163)
68 cd04115 Rab33B_Rab33A Rab33B/R 100.0 2.7E-31 5.9E-36 186.4 21.2 163 8-176 2-168 (170)
69 cd01861 Rab6 Rab6 subfamily. 100.0 2.3E-31 5E-36 185.1 20.4 160 9-175 1-160 (161)
70 KOG0088 GTPase Rab21, small G 100.0 1.3E-32 2.7E-37 181.0 12.7 175 5-186 10-184 (218)
71 cd01860 Rab5_related Rab5-rela 100.0 4.9E-31 1.1E-35 183.8 21.3 162 8-176 1-162 (163)
72 cd04140 ARHI_like ARHI subfami 100.0 4.9E-31 1.1E-35 184.2 20.9 162 9-175 2-163 (165)
73 cd04143 Rhes_like Rhes_like su 100.0 8.7E-31 1.9E-35 192.9 21.6 166 9-177 1-171 (247)
74 cd01892 Miro2 Miro2 subfamily. 100.0 6.3E-31 1.4E-35 184.2 19.3 164 6-177 2-166 (169)
75 smart00174 RHO Rho (Ras homolo 100.0 7.1E-31 1.5E-35 184.9 19.5 162 11-178 1-173 (174)
76 cd01863 Rab18 Rab18 subfamily. 100.0 1.5E-30 3.2E-35 181.1 20.7 160 9-175 1-160 (161)
77 cd04177 RSR1 RSR1 subgroup. R 100.0 1.6E-30 3.4E-35 182.2 20.9 163 9-177 2-164 (168)
78 cd04103 Centaurin_gamma Centau 100.0 7.9E-31 1.7E-35 181.5 19.2 157 9-175 1-157 (158)
79 smart00176 RAN Ran (Ras-relate 100.0 1.3E-30 2.8E-35 186.3 20.7 156 14-179 1-156 (200)
80 cd04123 Rab21 Rab21 subfamily. 100.0 2.3E-30 4.9E-35 180.1 21.2 161 9-176 1-161 (162)
81 cd04101 RabL4 RabL4 (Rab-like4 100.0 2E-30 4.4E-35 180.9 20.7 160 9-176 1-163 (164)
82 cd04130 Wrch_1 Wrch-1 subfamil 100.0 2.6E-30 5.7E-35 181.9 19.9 160 9-174 1-171 (173)
83 cd04114 Rab30 Rab30 subfamily. 100.0 7.2E-30 1.6E-34 178.9 22.1 164 6-176 5-168 (169)
84 cd04148 RGK RGK subfamily. Th 100.0 7.3E-30 1.6E-34 185.8 21.1 166 9-182 1-168 (221)
85 cd04135 Tc10 TC10 subfamily. 100.0 5.7E-30 1.2E-34 180.3 19.8 162 9-176 1-173 (174)
86 cd00154 Rab Rab family. Rab G 100.0 9.2E-30 2E-34 176.2 20.0 159 9-174 1-159 (159)
87 cd04146 RERG_RasL11_like RERG/ 100.0 7.9E-30 1.7E-34 178.1 18.6 162 10-177 1-164 (165)
88 cd04139 RalA_RalB RalA/RalB su 100.0 2.7E-29 5.8E-34 175.1 21.0 162 9-177 1-162 (164)
89 cd01873 RhoBTB RhoBTB subfamil 100.0 1.3E-29 2.9E-34 180.7 19.1 160 8-175 2-194 (195)
90 cd01870 RhoA_like RhoA-like su 100.0 2.3E-29 5E-34 177.4 20.1 162 9-176 2-174 (175)
91 KOG0081 GTPase Rab27, small G 100.0 9.7E-32 2.1E-36 176.9 7.2 175 5-185 6-189 (219)
92 KOG0097 GTPase Rab14, small G 100.0 1.4E-29 2.9E-34 163.9 16.9 194 6-206 9-215 (215)
93 cd04129 Rho2 Rho2 subfamily. 100.0 5.2E-29 1.1E-33 177.3 20.8 169 9-183 2-179 (187)
94 cd00876 Ras Ras family. The R 100.0 7.1E-29 1.5E-33 172.2 19.7 159 10-175 1-159 (160)
95 cd04147 Ras_dva Ras-dva subfam 100.0 1.3E-28 2.8E-33 176.8 20.4 170 10-184 1-170 (198)
96 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 6.6E-29 1.4E-33 176.1 18.7 167 8-182 3-175 (183)
97 cd04137 RheB Rheb (Ras Homolog 100.0 2.4E-28 5.2E-33 172.9 21.4 165 9-180 2-166 (180)
98 KOG0083 GTPase Rab26/Rab37, sm 100.0 5.6E-31 1.2E-35 168.6 6.5 162 13-181 2-164 (192)
99 smart00177 ARF ARF-like small 100.0 3.6E-29 7.9E-34 176.2 16.2 158 7-176 12-173 (175)
100 PLN00223 ADP-ribosylation fact 100.0 4.9E-29 1.1E-33 176.3 16.7 162 6-179 15-180 (181)
101 cd04149 Arf6 Arf6 subfamily. 100.0 2.3E-29 5.1E-34 176.0 14.7 156 7-174 8-167 (168)
102 cd04158 ARD1 ARD1 subfamily. 100.0 1.3E-28 2.7E-33 172.6 18.3 160 10-181 1-165 (169)
103 cd01893 Miro1 Miro1 subfamily. 100.0 1.8E-28 3.9E-33 171.4 18.6 163 9-178 1-165 (166)
104 cd00157 Rho Rho (Ras homology) 100.0 3.7E-28 8E-33 170.5 19.4 160 9-174 1-170 (171)
105 cd04150 Arf1_5_like Arf1-Arf5- 100.0 7.4E-29 1.6E-33 172.1 15.2 155 9-174 1-158 (159)
106 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 3.9E-29 8.3E-34 174.3 13.4 155 10-174 1-163 (164)
107 KOG0395 Ras-related GTPase [Ge 100.0 2.5E-28 5.4E-33 173.3 17.5 165 7-178 2-166 (196)
108 PTZ00133 ADP-ribosylation fact 100.0 1.5E-28 3.3E-33 174.0 16.3 161 7-179 16-180 (182)
109 cd04154 Arl2 Arl2 subfamily. 100.0 2E-28 4.2E-33 172.3 16.0 158 5-174 11-172 (173)
110 PTZ00132 GTP-binding nuclear p 100.0 2.9E-27 6.4E-32 171.9 22.1 168 4-181 5-172 (215)
111 cd04157 Arl6 Arl6 subfamily. 100.0 3.8E-28 8.3E-33 169.0 14.8 156 10-174 1-161 (162)
112 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.2E-27 2.6E-32 168.4 15.4 155 7-174 14-173 (174)
113 cd04156 ARLTS1 ARLTS1 subfamil 100.0 1.5E-27 3.3E-32 165.7 14.7 154 10-174 1-159 (160)
114 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.9E-27 4E-32 166.3 14.7 157 10-174 1-166 (167)
115 cd00878 Arf_Arl Arf (ADP-ribos 100.0 3.5E-27 7.6E-32 163.6 15.8 153 10-174 1-157 (158)
116 cd04151 Arl1 Arl1 subfamily. 100.0 2.5E-27 5.4E-32 164.3 14.2 153 10-174 1-157 (158)
117 KOG0393 Ras-related small GTPa 100.0 1.5E-27 3.2E-32 165.9 12.8 169 7-181 3-183 (198)
118 cd04160 Arfrp1 Arfrp1 subfamil 100.0 3.6E-27 7.8E-32 164.9 14.9 154 10-174 1-166 (167)
119 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.9E-26 4.1E-31 164.8 18.4 152 9-163 1-176 (202)
120 cd00879 Sar1 Sar1 subfamily. 100.0 1.6E-26 3.4E-31 165.0 17.6 158 6-175 17-189 (190)
121 PF00025 Arf: ADP-ribosylation 100.0 7.9E-27 1.7E-31 164.1 15.6 160 5-176 11-175 (175)
122 smart00178 SAR Sar1p-like memb 100.0 1.8E-26 4E-31 163.7 16.9 158 6-175 15-183 (184)
123 KOG0073 GTP-binding ADP-ribosy 99.9 5.8E-26 1.3E-30 150.4 16.5 166 5-179 13-180 (185)
124 cd04159 Arl10_like Arl10-like 99.9 3.2E-26 7E-31 158.4 15.8 154 10-174 1-158 (159)
125 cd04171 SelB SelB subfamily. 99.9 5.7E-26 1.2E-30 158.3 16.4 155 9-174 1-163 (164)
126 PRK12299 obgE GTPase CgtA; Rev 99.9 1.9E-25 4.2E-30 170.6 18.9 167 8-180 158-331 (335)
127 PTZ00099 rab6; Provisional 99.9 6.7E-25 1.5E-29 154.1 20.0 145 31-182 3-147 (176)
128 cd01897 NOG NOG1 is a nucleola 99.9 2.4E-25 5.3E-30 155.8 17.0 155 10-176 2-167 (168)
129 cd01898 Obg Obg subfamily. Th 99.9 2.9E-25 6.2E-30 155.7 17.0 160 10-175 2-169 (170)
130 KOG4252 GTP-binding protein [S 99.9 1.3E-27 2.8E-32 160.6 4.5 169 6-182 18-186 (246)
131 cd01890 LepA LepA subfamily. 99.9 3E-25 6.5E-30 156.9 16.9 155 10-176 2-176 (179)
132 cd04155 Arl3 Arl3 subfamily. 99.9 1.5E-25 3.3E-30 157.6 14.5 158 5-174 11-172 (173)
133 PLN00023 GTP-binding protein; 99.9 9.6E-25 2.1E-29 163.4 18.5 145 6-150 19-188 (334)
134 TIGR00231 small_GTP small GTP- 99.9 1.8E-24 3.8E-29 149.5 18.6 157 9-173 2-160 (161)
135 PF02421 FeoB_N: Ferrous iron 99.9 1.1E-25 2.4E-30 152.8 11.5 148 9-172 1-156 (156)
136 cd01878 HflX HflX subfamily. 99.9 9.2E-25 2E-29 157.6 15.9 156 6-175 39-203 (204)
137 TIGR02528 EutP ethanolamine ut 99.9 3.5E-25 7.6E-30 150.9 12.9 136 10-173 2-141 (142)
138 TIGR00436 era GTP-binding prot 99.9 2.7E-24 5.8E-29 161.1 17.3 158 10-181 2-168 (270)
139 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 4.4E-24 9.6E-29 149.3 16.3 159 10-177 2-166 (168)
140 cd01891 TypA_BipA TypA (tyrosi 99.9 3.4E-24 7.4E-29 153.4 15.6 162 9-179 3-190 (194)
141 KOG0075 GTP-binding ADP-ribosy 99.9 2.1E-25 4.6E-30 145.1 8.3 165 6-177 18-182 (186)
142 cd01879 FeoB Ferrous iron tran 99.9 7E-24 1.5E-28 146.9 16.1 148 13-176 1-156 (158)
143 cd01889 SelB_euk SelB subfamil 99.9 3.3E-24 7.2E-29 153.2 14.8 161 9-177 1-186 (192)
144 TIGR02729 Obg_CgtA Obg family 99.9 1E-23 2.2E-28 161.0 18.2 162 8-176 157-328 (329)
145 cd00882 Ras_like_GTPase Ras-li 99.9 3.4E-23 7.4E-28 141.9 17.7 155 13-173 1-156 (157)
146 PRK04213 GTP-binding protein; 99.9 1.8E-23 3.9E-28 150.5 16.6 154 6-178 7-193 (201)
147 KOG0070 GTP-binding ADP-ribosy 99.9 6.1E-24 1.3E-28 144.3 13.1 167 5-179 14-180 (181)
148 PRK03003 GTP-binding protein D 99.9 2.4E-23 5.2E-28 167.0 18.5 164 7-180 210-385 (472)
149 cd00881 GTP_translation_factor 99.9 1.7E-23 3.8E-28 149.0 15.6 157 10-176 1-186 (189)
150 TIGR03156 GTP_HflX GTP-binding 99.9 2.5E-23 5.3E-28 160.3 17.3 154 7-175 188-350 (351)
151 TIGR00475 selB selenocysteine- 99.9 1.8E-23 4E-28 170.5 17.2 160 9-181 1-170 (581)
152 COG1100 GTPase SAR1 and relate 99.9 1.1E-22 2.4E-27 148.3 19.4 172 8-183 5-191 (219)
153 PRK15494 era GTPase Era; Provi 99.9 3.8E-23 8.2E-28 159.0 17.6 164 6-185 50-224 (339)
154 PF00009 GTP_EFTU: Elongation 99.9 1.4E-23 3E-28 149.4 12.5 162 7-177 2-187 (188)
155 PRK12297 obgE GTPase CgtA; Rev 99.9 2.4E-22 5.3E-27 157.2 19.7 164 8-181 158-331 (424)
156 PRK03003 GTP-binding protein D 99.9 8.2E-23 1.8E-27 163.9 17.5 155 7-178 37-200 (472)
157 COG1159 Era GTPase [General fu 99.9 5E-23 1.1E-27 150.3 14.3 168 7-185 5-180 (298)
158 PRK12298 obgE GTPase CgtA; Rev 99.9 2.1E-22 4.6E-27 156.7 18.7 169 8-182 159-338 (390)
159 PRK00089 era GTPase Era; Revie 99.9 2.5E-22 5.5E-27 152.3 18.3 162 7-180 4-174 (292)
160 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2.6E-22 5.7E-27 138.7 16.7 146 9-176 2-156 (157)
161 cd01888 eIF2_gamma eIF2-gamma 99.9 8.8E-23 1.9E-27 146.9 14.4 163 9-177 1-199 (203)
162 PRK12296 obgE GTPase CgtA; Rev 99.9 2.6E-22 5.6E-27 159.0 18.2 169 7-181 158-344 (500)
163 TIGR03594 GTPase_EngA ribosome 99.9 2.6E-22 5.5E-27 160.0 18.3 164 6-179 170-346 (429)
164 TIGR00450 mnmE_trmE_thdF tRNA 99.9 3.4E-22 7.5E-27 158.1 18.4 153 6-179 201-362 (442)
165 TIGR01393 lepA GTP-binding pro 99.9 3.1E-22 6.7E-27 163.5 18.5 161 7-179 2-182 (595)
166 cd01881 Obg_like The Obg-like 99.9 1E-22 2.2E-27 143.5 13.7 159 13-175 1-175 (176)
167 TIGR00487 IF-2 translation ini 99.9 3.4E-22 7.4E-27 162.5 18.4 156 6-175 85-248 (587)
168 PF08477 Miro: Miro-like prote 99.9 2.5E-22 5.5E-27 132.7 14.2 114 10-128 1-119 (119)
169 PRK00454 engB GTP-binding prot 99.9 4.7E-22 1E-26 142.6 16.8 160 5-176 21-193 (196)
170 TIGR03598 GTPase_YsxC ribosome 99.9 2.3E-22 5E-27 142.1 14.8 152 4-166 14-179 (179)
171 cd01894 EngA1 EngA1 subfamily. 99.9 2.7E-22 5.9E-27 138.6 14.7 147 12-175 1-156 (157)
172 PRK11058 GTPase HflX; Provisio 99.9 3.2E-22 6.9E-27 157.4 16.9 162 9-183 198-368 (426)
173 PRK05291 trmE tRNA modificatio 99.9 2.9E-22 6.3E-27 159.3 16.6 149 7-178 214-371 (449)
174 COG1160 Predicted GTPases [Gen 99.9 3E-22 6.5E-27 153.9 15.7 150 9-177 4-165 (444)
175 PRK15467 ethanolamine utilizat 99.9 2.4E-22 5.2E-27 139.0 13.5 143 10-180 3-150 (158)
176 cd04163 Era Era subfamily. Er 99.9 1.4E-21 3E-26 136.2 16.9 157 8-175 3-167 (168)
177 cd01895 EngA2 EngA2 subfamily. 99.9 1.3E-21 2.9E-26 137.2 16.4 157 8-175 2-173 (174)
178 PRK04000 translation initiatio 99.9 5.1E-22 1.1E-26 156.4 15.2 171 1-178 2-202 (411)
179 KOG0071 GTP-binding ADP-ribosy 99.9 6E-22 1.3E-26 128.1 12.3 159 6-176 15-177 (180)
180 CHL00189 infB translation init 99.9 1.4E-21 3.1E-26 161.2 17.6 162 6-176 242-409 (742)
181 cd04105 SR_beta Signal recogni 99.9 2.1E-21 4.6E-26 139.6 16.4 122 10-133 2-125 (203)
182 PRK05306 infB translation init 99.9 1.2E-21 2.7E-26 162.9 16.7 159 6-175 288-450 (787)
183 PRK00093 GTP-binding protein D 99.9 4.1E-21 8.9E-26 153.3 18.5 163 6-178 171-345 (435)
184 PRK00093 GTP-binding protein D 99.9 3.5E-21 7.5E-26 153.7 17.6 149 9-176 2-161 (435)
185 PRK09518 bifunctional cytidyla 99.9 3.6E-21 7.8E-26 161.1 17.7 163 7-179 449-623 (712)
186 PRK05433 GTP-binding protein L 99.9 5.4E-21 1.2E-25 156.4 17.9 163 6-180 5-187 (600)
187 cd00880 Era_like Era (E. coli 99.9 4.4E-21 9.6E-26 132.6 14.6 154 13-175 1-162 (163)
188 TIGR03594 GTPase_EngA ribosome 99.9 6.9E-21 1.5E-25 151.8 17.1 151 10-179 1-162 (429)
189 COG1160 Predicted GTPases [Gen 99.9 9E-21 1.9E-25 145.8 16.7 163 7-179 177-353 (444)
190 KOG1673 Ras GTPases [General f 99.9 4.7E-21 1E-25 126.1 12.7 173 4-182 16-191 (205)
191 KOG3883 Ras family small GTPas 99.9 3.7E-20 7.9E-25 121.6 16.6 172 6-184 7-182 (198)
192 TIGR00483 EF-1_alpha translati 99.9 3E-21 6.5E-26 153.3 14.0 157 4-167 3-197 (426)
193 cd01884 EF_Tu EF-Tu subfamily. 99.9 1.7E-20 3.7E-25 133.6 16.3 151 8-166 2-172 (195)
194 TIGR03680 eif2g_arch translati 99.9 3.6E-21 7.7E-26 151.7 13.8 166 6-177 2-196 (406)
195 PRK09554 feoB ferrous iron tra 99.9 2E-20 4.3E-25 156.4 18.9 153 8-176 3-167 (772)
196 PRK12317 elongation factor 1-a 99.9 2.9E-21 6.3E-26 153.4 13.1 159 4-169 2-197 (425)
197 PRK10512 selenocysteinyl-tRNA- 99.9 1.6E-20 3.6E-25 153.8 17.5 160 10-178 2-167 (614)
198 cd01876 YihA_EngB The YihA (En 99.9 2.3E-20 4.9E-25 130.4 15.9 153 10-175 1-169 (170)
199 TIGR00437 feoB ferrous iron tr 99.9 1.2E-20 2.7E-25 154.2 16.5 146 15-176 1-154 (591)
200 KOG1423 Ras-like GTPase ERA [C 99.9 2.3E-20 5E-25 136.2 15.8 173 5-187 69-281 (379)
201 PRK09518 bifunctional cytidyla 99.9 3E-20 6.4E-25 155.6 18.3 155 7-178 274-437 (712)
202 cd01896 DRG The developmentall 99.9 5.4E-20 1.2E-24 134.7 17.5 155 10-176 2-225 (233)
203 TIGR00491 aIF-2 translation in 99.9 1.2E-20 2.6E-25 153.4 15.4 158 8-176 4-215 (590)
204 COG0218 Predicted GTPase [Gene 99.9 7.3E-20 1.6E-24 127.0 16.5 160 6-178 22-198 (200)
205 PRK10218 GTP-binding protein; 99.9 5.1E-20 1.1E-24 150.2 18.1 164 7-179 4-197 (607)
206 TIGR01394 TypA_BipA GTP-bindin 99.9 2.6E-20 5.5E-25 152.0 15.4 162 9-179 2-193 (594)
207 PRK12736 elongation factor Tu; 99.9 4.1E-20 8.8E-25 145.2 15.8 166 4-177 8-201 (394)
208 KOG4423 GTP-binding protein-li 99.8 8.3E-23 1.8E-27 138.3 0.1 198 4-202 21-219 (229)
209 PF10662 PduV-EutP: Ethanolami 99.8 3.3E-20 7.1E-25 123.4 12.2 136 10-173 3-142 (143)
210 PRK12735 elongation factor Tu; 99.8 5.3E-20 1.1E-24 144.6 15.4 166 4-177 8-203 (396)
211 COG0486 ThdF Predicted GTPase 99.8 1.4E-19 3E-24 139.7 16.9 155 6-179 215-378 (454)
212 cd04166 CysN_ATPS CysN_ATPS su 99.8 5.3E-20 1.2E-24 132.9 13.7 150 10-168 1-185 (208)
213 KOG0076 GTP-binding ADP-ribosy 99.8 5E-21 1.1E-25 128.3 7.6 168 6-179 15-189 (197)
214 COG1084 Predicted GTPase [Gene 99.8 2.6E-19 5.7E-24 132.2 16.2 166 1-178 161-337 (346)
215 CHL00071 tufA elongation facto 99.8 1.9E-19 4.2E-24 142.0 15.9 151 4-164 8-180 (409)
216 COG2262 HflX GTPases [General 99.8 4.1E-19 9E-24 134.9 16.4 169 6-188 190-367 (411)
217 cd01883 EF1_alpha Eukaryotic e 99.8 8E-20 1.7E-24 133.0 12.2 149 10-166 1-194 (219)
218 KOG1489 Predicted GTP-binding 99.8 3E-19 6.6E-24 131.0 14.1 161 7-175 195-365 (366)
219 COG2229 Predicted GTPase [Gene 99.8 1.9E-18 4.1E-23 117.5 16.6 159 5-175 7-176 (187)
220 cd04165 GTPBP1_like GTPBP1-lik 99.8 3.4E-19 7.3E-24 129.6 14.0 157 10-174 1-220 (224)
221 PRK04004 translation initiatio 99.8 5.4E-19 1.2E-23 144.2 16.3 159 7-176 5-217 (586)
222 cd04168 TetM_like Tet(M)-like 99.8 5.9E-19 1.3E-23 129.4 14.9 115 10-132 1-131 (237)
223 TIGR00485 EF-Tu translation el 99.8 4.2E-19 9.2E-24 139.6 14.6 149 5-163 9-179 (394)
224 PRK00049 elongation factor Tu; 99.8 6.5E-19 1.4E-23 138.4 15.6 163 4-176 8-202 (396)
225 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 1.1E-19 2.4E-24 123.5 9.7 164 7-180 9-172 (216)
226 KOG0072 GTP-binding ADP-ribosy 99.8 3.6E-20 7.9E-25 120.4 7.0 164 7-178 17-180 (182)
227 KOG0074 GTP-binding ADP-ribosy 99.8 1.4E-19 3E-24 117.4 9.4 167 3-176 12-178 (185)
228 PLN03126 Elongation factor Tu; 99.8 1.2E-18 2.5E-23 139.0 16.4 151 4-164 77-249 (478)
229 COG0370 FeoB Fe2+ transport sy 99.8 8.5E-19 1.8E-23 140.8 15.1 156 9-180 4-167 (653)
230 PLN03127 Elongation factor Tu; 99.8 1.3E-18 2.9E-23 138.0 16.0 164 4-177 57-252 (447)
231 cd04167 Snu114p Snu114p subfam 99.8 7.4E-19 1.6E-23 127.5 13.3 149 10-166 2-192 (213)
232 PLN00043 elongation factor 1-a 99.8 1.1E-18 2.5E-23 138.5 14.6 156 4-167 3-203 (447)
233 PTZ00141 elongation factor 1- 99.8 1.5E-18 3.4E-23 137.8 14.7 155 4-167 3-203 (446)
234 cd04104 p47_IIGP_like p47 (47- 99.8 6.4E-18 1.4E-22 121.1 15.7 162 8-180 1-187 (197)
235 COG1163 DRG Predicted GTPase [ 99.8 6.8E-18 1.5E-22 124.4 15.7 171 7-189 62-306 (365)
236 KOG0462 Elongation factor-type 99.8 2.3E-18 5E-23 134.4 13.6 175 5-189 57-247 (650)
237 cd01885 EF2 EF2 (for archaea a 99.8 8.1E-18 1.8E-22 121.9 14.1 113 10-130 2-138 (222)
238 PRK05124 cysN sulfate adenylyl 99.8 5E-18 1.1E-22 135.9 13.9 156 5-169 24-217 (474)
239 PTZ00327 eukaryotic translatio 99.8 8.1E-18 1.8E-22 133.4 13.9 167 4-178 30-234 (460)
240 cd01886 EF-G Elongation factor 99.8 1.9E-17 4.2E-22 123.5 14.6 140 10-160 1-158 (270)
241 TIGR02034 CysN sulfate adenyly 99.8 1.3E-17 2.9E-22 131.5 13.5 150 9-167 1-187 (406)
242 COG0536 Obg Predicted GTPase [ 99.8 3.6E-17 7.8E-22 121.5 14.4 168 8-180 159-336 (369)
243 cd04169 RF3 RF3 subfamily. Pe 99.8 7.3E-17 1.6E-21 120.3 16.1 117 9-133 3-139 (267)
244 PF09439 SRPRB: Signal recogni 99.8 5.8E-18 1.2E-22 117.6 8.8 130 9-143 4-138 (181)
245 cd01899 Ygr210 Ygr210 subfamil 99.8 1.1E-16 2.5E-21 121.5 16.5 163 11-179 1-271 (318)
246 COG0532 InfB Translation initi 99.7 6.9E-17 1.5E-21 126.6 15.1 165 7-179 4-172 (509)
247 cd01850 CDC_Septin CDC/Septin. 99.7 1.1E-16 2.4E-21 119.9 15.5 145 7-161 3-186 (276)
248 PRK05506 bifunctional sulfate 99.7 3.6E-17 7.9E-22 135.7 14.1 155 4-167 20-211 (632)
249 COG0481 LepA Membrane GTPase L 99.7 6.9E-17 1.5E-21 124.5 14.0 177 4-190 5-199 (603)
250 PRK00741 prfC peptide chain re 99.7 1.6E-16 3.4E-21 128.4 15.5 119 6-132 8-146 (526)
251 COG3596 Predicted GTPase [Gene 99.7 4.1E-17 8.9E-22 118.0 10.4 165 5-179 36-224 (296)
252 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 4.7E-17 1E-21 117.9 10.2 173 10-189 1-188 (232)
253 PRK13351 elongation factor G; 99.7 1.4E-16 3.1E-21 133.5 13.9 117 6-132 6-140 (687)
254 COG5256 TEF1 Translation elong 99.7 1.5E-16 3.3E-21 121.0 12.4 157 4-167 3-201 (428)
255 KOG1707 Predicted Ras related/ 99.7 3.7E-17 8.1E-22 128.6 9.4 167 6-178 7-176 (625)
256 cd04170 EF-G_bact Elongation f 99.7 4.7E-16 1E-20 116.6 14.9 153 10-177 1-173 (268)
257 KOG1145 Mitochondrial translat 99.7 8.8E-16 1.9E-20 120.2 15.5 162 6-176 151-315 (683)
258 PF01926 MMR_HSR1: 50S ribosom 99.7 8.4E-16 1.8E-20 100.9 13.3 106 10-126 1-116 (116)
259 KOG1191 Mitochondrial GTPase [ 99.7 2.2E-16 4.7E-21 122.3 11.6 171 6-180 266-453 (531)
260 KOG1490 GTP-binding protein CR 99.7 1.2E-16 2.7E-21 123.7 10.2 178 1-185 161-349 (620)
261 COG4917 EutP Ethanolamine util 99.7 1.5E-16 3.2E-21 101.3 8.4 138 10-175 3-144 (148)
262 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 2.1E-15 4.5E-20 108.1 15.4 163 9-178 1-185 (196)
263 KOG0090 Signal recognition par 99.7 3.5E-16 7.6E-21 108.9 10.8 163 6-175 36-237 (238)
264 TIGR00484 EF-G translation elo 99.7 1.2E-15 2.7E-20 127.7 15.2 118 5-132 7-142 (689)
265 PRK09866 hypothetical protein; 99.7 4.9E-15 1.1E-19 119.2 17.6 110 58-175 231-351 (741)
266 PRK09602 translation-associate 99.7 3.8E-15 8.2E-20 116.5 16.1 83 9-91 2-113 (396)
267 KOG0077 Vesicle coat complex C 99.7 4.4E-16 9.5E-21 104.0 8.5 158 6-175 18-191 (193)
268 COG5257 GCD11 Translation init 99.7 9.2E-16 2E-20 113.1 10.0 190 6-203 8-226 (415)
269 TIGR00503 prfC peptide chain r 99.7 5.1E-15 1.1E-19 119.8 14.6 119 6-132 9-147 (527)
270 PRK12739 elongation factor G; 99.7 4.9E-15 1.1E-19 124.1 15.0 117 6-132 6-140 (691)
271 PRK00007 elongation factor G; 99.6 2.8E-15 6.1E-20 125.5 13.4 119 5-133 7-143 (693)
272 KOG3905 Dynein light intermedi 99.6 1.2E-14 2.7E-19 107.4 14.1 170 7-180 51-293 (473)
273 PRK12740 elongation factor G; 99.6 9.6E-15 2.1E-19 122.3 13.7 109 14-132 1-127 (668)
274 KOG0461 Selenocysteine-specifi 99.6 3E-14 6.4E-19 106.3 14.6 187 7-203 6-217 (522)
275 TIGR00490 aEF-2 translation el 99.6 1E-14 2.2E-19 122.6 11.7 121 4-132 15-153 (720)
276 PTZ00258 GTP-binding protein; 99.6 7.9E-14 1.7E-18 108.1 15.2 88 4-91 17-126 (390)
277 COG1217 TypA Predicted membran 99.6 8.9E-14 1.9E-18 107.3 13.7 171 7-186 4-204 (603)
278 PRK09435 membrane ATPase/prote 99.6 1.4E-13 3.1E-18 104.8 14.0 111 56-181 148-264 (332)
279 PRK07560 elongation factor EF- 99.6 4.4E-14 9.5E-19 119.1 12.1 121 4-132 16-154 (731)
280 PRK13768 GTPase; Provisional 99.6 6.7E-14 1.5E-18 103.8 11.8 115 58-177 98-247 (253)
281 COG3276 SelB Selenocysteine-sp 99.6 5.2E-14 1.1E-18 108.1 11.1 182 10-204 2-187 (447)
282 PF05783 DLIC: Dynein light in 99.5 3.3E-13 7.3E-18 107.1 15.4 172 7-182 24-269 (472)
283 PRK14845 translation initiatio 99.5 2.5E-13 5.4E-18 116.3 14.9 147 19-176 472-672 (1049)
284 PF03029 ATP_bind_1: Conserved 99.5 2.5E-14 5.5E-19 104.8 7.6 115 58-176 92-236 (238)
285 COG2895 CysN GTPases - Sulfate 99.5 1.7E-13 3.8E-18 102.4 11.8 152 6-167 4-193 (431)
286 KOG1532 GTPase XAB1, interacts 99.5 3.1E-14 6.6E-19 103.1 7.4 171 5-181 16-268 (366)
287 KOG1486 GTP-binding protein DR 99.5 1.1E-12 2.5E-17 93.9 15.1 159 8-178 62-289 (364)
288 cd01882 BMS1 Bms1. Bms1 is an 99.5 4.7E-13 1E-17 97.7 13.6 142 6-163 37-182 (225)
289 TIGR00101 ureG urease accessor 99.5 7.3E-13 1.6E-17 94.8 14.0 104 57-177 92-196 (199)
290 cd01853 Toc34_like Toc34-like 99.5 9.3E-13 2E-17 97.1 14.6 124 4-132 27-164 (249)
291 PLN00116 translation elongatio 99.5 1.1E-13 2.4E-18 118.0 10.8 119 4-130 15-163 (843)
292 TIGR00991 3a0901s02IAP34 GTP-b 99.5 1.2E-12 2.6E-17 98.1 14.8 126 2-131 32-167 (313)
293 COG0050 TufB GTPases - transla 99.5 6.1E-13 1.3E-17 97.3 12.8 178 4-193 8-213 (394)
294 PTZ00416 elongation factor 2; 99.5 1.6E-13 3.5E-18 116.9 10.6 118 5-130 16-157 (836)
295 PF04548 AIG1: AIG1 family; I 99.5 6.8E-13 1.5E-17 96.1 12.3 164 9-179 1-188 (212)
296 PRK09601 GTP-binding protein Y 99.5 3E-12 6.6E-17 98.4 15.8 83 9-91 3-107 (364)
297 KOG1707 Predicted Ras related/ 99.5 1.9E-12 4.1E-17 102.5 14.8 163 4-177 421-583 (625)
298 KOG0458 Elongation factor 1 al 99.5 2.7E-12 5.9E-17 101.6 15.6 158 5-167 174-372 (603)
299 cd00066 G-alpha G protein alph 99.5 3.7E-12 8.1E-17 97.5 15.2 125 56-180 160-314 (317)
300 TIGR02836 spore_IV_A stage IV 99.5 1.1E-11 2.4E-16 95.5 17.0 178 6-199 15-257 (492)
301 TIGR00073 hypB hydrogenase acc 99.4 3.3E-12 7.2E-17 92.2 12.8 154 6-176 20-206 (207)
302 smart00275 G_alpha G protein a 99.4 9E-12 1.9E-16 96.2 14.9 121 57-180 184-337 (342)
303 PF00350 Dynamin_N: Dynamin fa 99.4 5.2E-12 1.1E-16 88.3 12.3 62 59-127 103-168 (168)
304 PF05049 IIGP: Interferon-indu 99.4 2.3E-12 4.9E-17 99.1 11.1 166 6-182 33-223 (376)
305 PF00735 Septin: Septin; Inte 99.4 5.2E-12 1.1E-16 94.8 12.4 145 7-160 3-184 (281)
306 TIGR00157 ribosome small subun 99.4 1.6E-12 3.4E-17 96.0 9.2 96 68-174 24-120 (245)
307 KOG1144 Translation initiation 99.4 1.4E-12 3.1E-17 105.6 9.4 168 8-183 475-693 (1064)
308 TIGR00750 lao LAO/AO transport 99.4 1.3E-11 2.8E-16 94.0 14.2 107 56-177 126-238 (300)
309 KOG0410 Predicted GTP binding 99.4 2.6E-12 5.7E-17 95.2 8.8 160 6-180 176-344 (410)
310 COG0480 FusA Translation elong 99.4 6.4E-12 1.4E-16 104.0 11.4 123 5-136 7-147 (697)
311 PF03308 ArgK: ArgK protein; 99.4 2E-13 4.3E-18 99.0 1.9 151 6-176 27-229 (266)
312 COG0378 HypB Ni2+-binding GTPa 99.4 1.5E-12 3.3E-17 90.1 6.0 81 82-176 119-200 (202)
313 smart00053 DYNc Dynamin, GTPas 99.3 3.5E-11 7.5E-16 88.0 12.8 68 58-132 126-207 (240)
314 KOG0460 Mitochondrial translat 99.3 3.4E-11 7.4E-16 89.9 11.6 185 4-196 50-260 (449)
315 KOG3886 GTP-binding protein [S 99.3 8E-12 1.7E-16 88.5 7.6 147 8-161 4-163 (295)
316 COG0012 Predicted GTPase, prob 99.3 1.6E-10 3.6E-15 87.8 15.1 84 8-91 2-108 (372)
317 KOG0082 G-protein alpha subuni 99.3 2.1E-10 4.5E-15 87.3 15.6 135 45-181 185-348 (354)
318 PRK10463 hydrogenase nickel in 99.3 1.6E-11 3.4E-16 91.6 9.0 57 117-175 230-287 (290)
319 COG5258 GTPBP1 GTPase [General 99.3 5.4E-11 1.2E-15 90.2 11.5 162 5-174 114-336 (527)
320 COG5019 CDC3 Septin family pro 99.3 2.7E-10 5.8E-15 86.2 14.5 143 5-156 20-200 (373)
321 COG1703 ArgK Putative periplas 99.3 7.3E-11 1.6E-15 87.0 11.0 162 6-182 49-259 (323)
322 TIGR00993 3a0901s04IAP86 chlor 99.3 2.2E-10 4.7E-15 93.3 14.4 122 6-131 116-250 (763)
323 COG4108 PrfC Peptide chain rel 99.3 2.1E-10 4.6E-15 88.4 13.5 118 7-132 11-148 (528)
324 KOG0705 GTPase-activating prot 99.3 4.2E-11 9.1E-16 94.4 9.3 171 5-185 27-197 (749)
325 KOG0466 Translation initiation 99.2 9.6E-12 2.1E-16 91.6 4.6 189 5-205 35-267 (466)
326 smart00010 small_GTPase Small 99.2 1.9E-10 4.2E-15 76.0 10.3 114 9-166 1-115 (124)
327 cd01900 YchF YchF subfamily. 99.2 3.7E-11 8.1E-16 89.5 7.4 81 11-91 1-103 (274)
328 KOG1547 Septin CDC10 and relat 99.2 9.4E-10 2E-14 78.6 13.2 158 6-173 44-239 (336)
329 KOG2655 Septin family protein 99.2 1E-09 2.3E-14 83.6 14.0 148 6-162 19-202 (366)
330 KOG0468 U5 snRNP-specific prot 99.2 2E-10 4.4E-15 92.5 10.4 121 2-130 122-262 (971)
331 KOG1487 GTP-binding protein DR 99.2 2E-10 4.4E-15 82.9 9.4 173 9-193 60-302 (358)
332 KOG1954 Endocytosis/signaling 99.2 2.6E-10 5.7E-15 86.2 9.7 117 9-132 59-226 (532)
333 KOG0463 GTP-binding protein GP 99.1 2.9E-10 6.4E-15 86.2 9.0 179 7-195 132-374 (641)
334 COG5192 BMS1 GTP-binding prote 99.1 1.6E-09 3.4E-14 86.3 11.4 143 4-162 65-211 (1077)
335 cd01855 YqeH YqeH. YqeH is an 99.1 6.5E-10 1.4E-14 79.3 8.6 95 70-177 24-125 (190)
336 KOG1143 Predicted translation 99.1 1.1E-09 2.4E-14 83.0 9.9 156 7-170 166-381 (591)
337 cd01859 MJ1464 MJ1464. This f 99.1 1.1E-09 2.4E-14 75.6 8.7 96 70-178 2-97 (156)
338 PRK12288 GTPase RsgA; Reviewed 99.0 3.6E-09 7.9E-14 81.8 8.7 89 77-174 117-205 (347)
339 PRK12289 GTPase RsgA; Reviewed 99.0 6.7E-09 1.5E-13 80.3 10.1 91 72-174 81-172 (352)
340 cd01854 YjeQ_engC YjeQ/EngC. 99.0 5.5E-09 1.2E-13 79.1 9.1 89 74-174 72-161 (287)
341 PRK00098 GTPase RsgA; Reviewed 98.9 6.3E-09 1.4E-13 79.2 8.7 88 75-173 75-163 (298)
342 KOG1491 Predicted GTP-binding 98.9 2.2E-09 4.8E-14 80.4 5.7 90 2-91 14-125 (391)
343 KOG3887 Predicted small GTPase 98.9 1.1E-08 2.4E-13 73.3 8.6 173 9-186 28-211 (347)
344 TIGR00092 GTP-binding protein 98.9 8.4E-09 1.8E-13 79.6 8.3 83 9-91 3-108 (368)
345 KOG2486 Predicted GTPase [Gene 98.9 8.7E-09 1.9E-13 75.3 7.7 158 5-175 133-314 (320)
346 PF00503 G-alpha: G-protein al 98.9 1.3E-08 2.9E-13 80.4 8.7 119 57-175 236-388 (389)
347 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 7.3E-09 1.6E-13 70.2 6.3 54 10-67 85-138 (141)
348 KOG0448 Mitofusin 1 GTPase, in 98.9 1.1E-07 2.3E-12 77.4 13.5 146 6-161 107-310 (749)
349 TIGR03597 GTPase_YqeH ribosome 98.8 2E-08 4.2E-13 78.4 8.6 96 67-175 50-151 (360)
350 cd01858 NGP_1 NGP-1. Autoanti 98.8 1.7E-08 3.7E-13 69.7 7.3 55 7-66 101-156 (157)
351 cd04178 Nucleostemin_like Nucl 98.8 1.4E-08 3E-13 71.0 6.6 55 7-66 116-171 (172)
352 cd01858 NGP_1 NGP-1. Autoanti 98.8 4.2E-08 9.1E-13 67.8 8.6 91 76-176 4-94 (157)
353 cd01856 YlqF YlqF. Proteins o 98.8 3.2E-08 6.9E-13 69.4 8.0 98 65-177 3-101 (171)
354 KOG0467 Translation elongation 98.8 5.2E-08 1.1E-12 80.0 9.0 118 4-129 5-136 (887)
355 cd01856 YlqF YlqF. Proteins o 98.7 4.2E-08 9.1E-13 68.8 6.8 58 6-67 113-170 (171)
356 TIGR03348 VI_IcmF type VI secr 98.7 1.5E-07 3.4E-12 83.6 11.6 113 11-132 114-258 (1169)
357 cd01849 YlqF_related_GTPase Yl 98.7 1.1E-07 2.4E-12 65.5 8.6 84 82-176 1-84 (155)
358 COG1618 Predicted nucleotide k 98.7 3E-06 6.5E-11 57.4 14.6 57 6-65 3-59 (179)
359 cd01855 YqeH YqeH. YqeH is an 98.7 3.9E-08 8.4E-13 70.1 6.0 54 8-66 127-189 (190)
360 PRK14974 cell division protein 98.7 5.3E-08 1.1E-12 74.8 6.5 94 57-170 223-323 (336)
361 KOG0447 Dynamin-like GTP bindi 98.7 6.5E-07 1.4E-11 71.5 12.6 109 58-174 413-541 (980)
362 TIGR03596 GTPase_YlqF ribosome 98.7 7.6E-08 1.7E-12 72.6 7.3 57 6-67 116-173 (276)
363 PRK10416 signal recognition pa 98.7 6E-08 1.3E-12 74.2 6.6 145 7-170 113-303 (318)
364 KOG0465 Mitochondrial elongati 98.7 6.3E-08 1.4E-12 77.8 6.8 119 6-132 37-171 (721)
365 PRK09563 rbgA GTPase YlqF; Rev 98.7 1.2E-07 2.6E-12 71.9 8.0 57 6-67 119-176 (287)
366 TIGR03596 GTPase_YlqF ribosome 98.7 1.7E-07 3.7E-12 70.7 8.8 101 64-179 4-105 (276)
367 COG1161 Predicted GTPases [Gen 98.7 7E-08 1.5E-12 74.1 6.6 58 6-67 130-187 (322)
368 cd01851 GBP Guanylate-binding 98.7 3.3E-07 7.1E-12 67.0 9.8 89 4-92 3-103 (224)
369 PF03193 DUF258: Protein of un 98.6 5.3E-08 1.2E-12 66.7 4.7 59 9-70 36-100 (161)
370 cd01849 YlqF_related_GTPase Yl 98.6 1E-07 2.3E-12 65.7 6.2 56 6-66 98-154 (155)
371 cd03112 CobW_like The function 98.6 3.2E-07 7E-12 63.4 8.6 21 11-31 3-23 (158)
372 cd01859 MJ1464 MJ1464. This f 98.6 1.7E-07 3.6E-12 64.7 7.0 56 7-66 100-155 (156)
373 TIGR00064 ftsY signal recognit 98.6 1.1E-06 2.5E-11 65.9 11.9 95 57-170 155-261 (272)
374 PF09547 Spore_IV_A: Stage IV 98.6 5.5E-06 1.2E-10 64.6 15.3 176 7-198 16-256 (492)
375 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 3.3E-07 7E-12 62.1 7.1 78 74-164 5-84 (141)
376 PRK01889 GTPase RsgA; Reviewed 98.5 8.7E-07 1.9E-11 69.1 9.5 85 77-173 109-193 (356)
377 KOG0464 Elongation factor G [T 98.5 5.7E-08 1.2E-12 75.0 2.6 119 7-133 36-170 (753)
378 PRK09563 rbgA GTPase YlqF; Rev 98.5 6.8E-07 1.5E-11 67.8 8.3 101 64-179 7-108 (287)
379 KOG0085 G protein subunit Galp 98.5 2.5E-07 5.5E-12 66.1 5.4 123 55-180 197-352 (359)
380 TIGR01425 SRP54_euk signal rec 98.5 1.5E-06 3.2E-11 68.8 10.1 115 7-131 99-253 (429)
381 KOG3859 Septins (P-loop GTPase 98.5 6.1E-07 1.3E-11 65.9 6.8 119 6-132 40-191 (406)
382 PRK13796 GTPase YqeH; Provisio 98.5 1.7E-06 3.7E-11 67.8 9.5 96 69-175 58-157 (365)
383 KOG0469 Elongation factor 2 [T 98.4 1.2E-06 2.6E-11 69.3 8.0 121 2-130 13-163 (842)
384 PRK12288 GTPase RsgA; Reviewed 98.4 7.3E-07 1.6E-11 69.1 6.6 58 11-71 208-271 (347)
385 KOG0459 Polypeptide release fa 98.4 7E-07 1.5E-11 68.7 6.1 160 5-170 76-279 (501)
386 COG3523 IcmF Type VI protein s 98.4 1.7E-06 3.7E-11 75.7 9.0 114 12-132 129-271 (1188)
387 PRK13796 GTPase YqeH; Provisio 98.4 7.5E-07 1.6E-11 69.8 5.7 54 9-67 161-220 (365)
388 TIGR00157 ribosome small subun 98.4 1E-06 2.2E-11 65.3 6.0 23 10-32 122-144 (245)
389 COG1162 Predicted GTPases [Gen 98.4 8.8E-07 1.9E-11 66.3 5.5 59 10-71 166-230 (301)
390 TIGR03597 GTPase_YqeH ribosome 98.4 1.2E-06 2.7E-11 68.4 6.6 55 9-68 155-215 (360)
391 PRK12289 GTPase RsgA; Reviewed 98.3 1.5E-06 3.2E-11 67.5 6.1 55 11-68 175-235 (352)
392 COG0523 Putative GTPases (G3E 98.3 2.7E-05 5.8E-10 59.8 12.8 99 57-169 85-193 (323)
393 KOG1533 Predicted GTPase [Gene 98.3 5.4E-07 1.2E-11 64.6 3.0 111 58-174 98-250 (290)
394 PF00448 SRP54: SRP54-type pro 98.3 9.6E-06 2.1E-10 58.0 9.4 85 57-159 84-175 (196)
395 PF03266 NTPase_1: NTPase; In 98.3 4.8E-06 1E-10 58.0 7.5 134 10-165 1-163 (168)
396 cd03114 ArgK-like The function 98.3 7.4E-06 1.6E-10 55.9 8.2 58 56-128 91-148 (148)
397 cd03115 SRP The signal recogni 98.3 2.3E-05 5E-10 55.0 10.6 66 57-132 83-154 (173)
398 PRK14722 flhF flagellar biosyn 98.2 2.7E-05 5.8E-10 60.8 11.1 23 8-30 137-159 (374)
399 PF02492 cobW: CobW/HypB/UreG, 98.2 5.5E-06 1.2E-10 58.4 6.7 87 57-155 85-177 (178)
400 COG1162 Predicted GTPases [Gen 98.2 1.8E-05 4E-10 59.4 9.5 94 72-175 71-165 (301)
401 PRK11537 putative GTP-binding 98.2 4.9E-05 1.1E-09 58.5 12.1 96 57-169 91-196 (318)
402 TIGR00959 ffh signal recogniti 98.2 1.1E-05 2.4E-10 64.2 8.7 86 57-159 183-274 (428)
403 PRK00771 signal recognition pa 98.2 4.9E-06 1.1E-10 66.4 6.4 23 7-29 94-116 (437)
404 PRK10867 signal recognition pa 98.2 1.4E-05 3.1E-10 63.7 8.8 86 57-159 184-275 (433)
405 KOG0099 G protein subunit Galp 98.2 1E-05 2.2E-10 59.1 7.2 75 57-131 202-283 (379)
406 PRK13695 putative NTPase; Prov 98.1 0.00013 2.8E-09 51.3 12.4 22 9-30 1-22 (174)
407 cd01854 YjeQ_engC YjeQ/EngC. 98.1 7.1E-06 1.5E-10 62.3 6.4 60 9-71 162-227 (287)
408 PRK00098 GTPase RsgA; Reviewed 98.1 7.8E-06 1.7E-10 62.4 6.0 24 9-32 165-188 (298)
409 KOG1534 Putative transcription 98.1 3E-06 6.5E-11 59.9 3.2 114 59-176 100-250 (273)
410 PRK11889 flhF flagellar biosyn 98.1 6.8E-05 1.5E-09 58.8 10.7 22 8-29 241-262 (436)
411 KOG1424 Predicted GTP-binding 98.1 5.9E-06 1.3E-10 65.6 5.0 55 8-66 314-368 (562)
412 PF06858 NOG1: Nucleolar GTP-b 98.1 2.1E-05 4.5E-10 43.7 5.7 44 80-128 13-58 (58)
413 PRK12727 flagellar biosynthesi 98.1 0.00012 2.6E-09 59.5 12.1 23 8-30 350-372 (559)
414 COG1419 FlhF Flagellar GTP-bin 98.0 0.00012 2.6E-09 57.2 10.9 25 8-32 203-227 (407)
415 KOG2484 GTPase [General functi 98.0 6.1E-06 1.3E-10 63.6 3.6 57 6-66 250-306 (435)
416 PRK14721 flhF flagellar biosyn 98.0 0.00011 2.4E-09 58.3 10.5 23 8-30 191-213 (420)
417 PF05621 TniB: Bacterial TniB 98.0 6.3E-05 1.4E-09 56.7 8.5 106 4-126 57-189 (302)
418 KOG4273 Uncharacterized conser 98.0 7.4E-05 1.6E-09 54.4 8.4 116 9-132 5-124 (418)
419 PRK06995 flhF flagellar biosyn 97.9 0.0003 6.6E-09 56.8 12.1 22 9-30 257-278 (484)
420 cd02038 FleN-like FleN is a me 97.9 9.5E-05 2.1E-09 49.9 7.9 106 12-129 4-109 (139)
421 TIGR02475 CobW cobalamin biosy 97.9 0.00056 1.2E-08 53.2 12.8 22 10-31 6-27 (341)
422 PRK12723 flagellar biosynthesi 97.9 0.0004 8.6E-09 54.8 11.7 23 8-30 174-196 (388)
423 PRK05703 flhF flagellar biosyn 97.9 0.00043 9.3E-09 55.4 12.1 87 57-160 300-393 (424)
424 KOG2485 Conserved ATP/GTP bind 97.9 2.7E-05 5.9E-10 58.3 4.8 61 5-67 140-206 (335)
425 PRK14723 flhF flagellar biosyn 97.9 0.00062 1.3E-08 57.8 13.3 22 9-30 186-207 (767)
426 PRK12724 flagellar biosynthesi 97.8 0.00015 3.2E-09 57.4 8.3 23 8-30 223-245 (432)
427 PRK12726 flagellar biosynthesi 97.8 0.00054 1.2E-08 53.6 10.6 23 8-30 206-228 (407)
428 COG0563 Adk Adenylate kinase a 97.7 2.6E-05 5.6E-10 54.8 2.9 23 9-31 1-23 (178)
429 PF13207 AAA_17: AAA domain; P 97.7 3E-05 6.6E-10 50.9 3.1 22 10-31 1-22 (121)
430 PRK08118 topology modulation p 97.7 3.7E-05 8.1E-10 53.6 3.1 23 9-31 2-24 (167)
431 PRK07261 topology modulation p 97.6 4.2E-05 9E-10 53.6 3.0 23 9-31 1-23 (171)
432 cd02042 ParA ParA and ParB of 97.6 0.00033 7.1E-09 44.6 7.0 82 11-104 2-84 (104)
433 PRK06731 flhF flagellar biosyn 97.6 0.0011 2.3E-08 49.8 10.3 23 8-30 75-97 (270)
434 PF13671 AAA_33: AAA domain; P 97.6 5.7E-05 1.2E-09 51.1 2.9 21 11-31 2-22 (143)
435 COG3640 CooC CO dehydrogenase 97.6 0.00044 9.6E-09 50.0 7.3 41 78-129 153-197 (255)
436 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.00073 1.6E-08 42.1 7.6 69 11-93 2-71 (99)
437 PF05729 NACHT: NACHT domain 97.6 0.00024 5.1E-09 49.1 5.8 22 10-31 2-23 (166)
438 cd00009 AAA The AAA+ (ATPases 97.6 0.00078 1.7E-08 45.2 8.3 25 8-32 19-43 (151)
439 COG1126 GlnQ ABC-type polar am 97.6 7.2E-05 1.6E-09 53.4 3.1 22 10-31 30-51 (240)
440 KOG2423 Nucleolar GTPase [Gene 97.6 3.9E-05 8.4E-10 59.3 1.9 83 4-94 303-388 (572)
441 cd04178 Nucleostemin_like Nucl 97.5 0.00037 8.1E-09 48.8 6.5 44 82-131 1-44 (172)
442 cd02019 NK Nucleoside/nucleoti 97.5 9.7E-05 2.1E-09 43.4 3.0 21 11-31 2-22 (69)
443 COG0541 Ffh Signal recognition 97.5 8.9E-05 1.9E-09 58.2 3.5 25 5-29 97-121 (451)
444 COG0194 Gmk Guanylate kinase [ 97.5 5.6E-05 1.2E-09 52.7 2.1 24 9-32 5-28 (191)
445 KOG0066 eIF2-interacting prote 97.5 0.0008 1.7E-08 53.3 8.3 25 8-32 613-637 (807)
446 COG1136 SalX ABC-type antimicr 97.5 9.3E-05 2E-09 53.6 2.9 23 10-32 33-55 (226)
447 TIGR00235 udk uridine kinase. 97.5 0.00014 3E-09 52.6 3.9 27 5-31 3-29 (207)
448 PF13555 AAA_29: P-loop contai 97.5 0.00014 3.1E-09 41.4 3.0 21 10-30 25-45 (62)
449 KOG0446 Vacuolar sorting prote 97.5 2.8E-05 6.1E-10 65.0 0.0 123 6-134 27-216 (657)
450 COG1116 TauB ABC-type nitrate/ 97.5 0.00011 2.4E-09 53.7 3.0 21 11-31 32-52 (248)
451 COG0552 FtsY Signal recognitio 97.4 0.00012 2.7E-09 55.5 3.4 25 6-30 137-161 (340)
452 TIGR00150 HI0065_YjeE ATPase, 97.4 0.00076 1.6E-08 44.9 6.7 24 9-32 23-46 (133)
453 PF13521 AAA_28: AAA domain; P 97.4 7.9E-05 1.7E-09 51.7 2.1 22 10-31 1-22 (163)
454 PRK14738 gmk guanylate kinase; 97.4 0.00016 3.6E-09 52.2 3.7 28 5-32 10-37 (206)
455 KOG2484 GTPase [General functi 97.4 0.0011 2.4E-08 51.6 8.1 84 67-160 133-216 (435)
456 PF11111 CENP-M: Centromere pr 97.4 0.013 2.9E-07 40.5 12.6 140 5-176 12-152 (176)
457 PF03215 Rad17: Rad17 cell cyc 97.4 0.0018 3.9E-08 53.1 9.8 22 10-31 47-68 (519)
458 cd03222 ABC_RNaseL_inhibitor T 97.4 0.0019 4E-08 45.5 8.6 23 10-32 27-49 (177)
459 PRK14737 gmk guanylate kinase; 97.4 0.00016 3.6E-09 51.3 3.3 25 8-32 4-28 (186)
460 cd00071 GMPK Guanosine monopho 97.4 0.00022 4.7E-09 48.1 3.7 21 11-31 2-22 (137)
461 PRK06217 hypothetical protein; 97.4 0.00017 3.6E-09 51.1 3.3 23 9-31 2-24 (183)
462 PRK03839 putative kinase; Prov 97.4 0.00015 3.2E-09 51.2 3.0 22 10-31 2-23 (180)
463 COG1161 Predicted GTPases [Gen 97.4 0.00068 1.5E-08 52.4 6.8 95 62-170 15-110 (322)
464 PF04665 Pox_A32: Poxvirus A32 97.4 0.00016 3.6E-09 53.0 3.1 26 6-31 11-36 (241)
465 PTZ00088 adenylate kinase 1; P 97.4 0.00018 4E-09 52.7 3.3 26 6-31 4-29 (229)
466 PF13238 AAA_18: AAA domain; P 97.3 0.00018 3.9E-09 47.5 2.9 21 11-31 1-21 (129)
467 PRK14530 adenylate kinase; Pro 97.3 0.00019 4.2E-09 52.2 3.2 22 9-30 4-25 (215)
468 PF00005 ABC_tran: ABC transpo 97.3 0.0002 4.4E-09 48.0 3.0 23 10-32 13-35 (137)
469 PF03205 MobB: Molybdopterin g 97.3 0.00023 5E-09 48.1 3.1 22 10-31 2-23 (140)
470 PF00004 AAA: ATPase family as 97.3 0.00022 4.8E-09 47.3 3.0 21 11-31 1-21 (132)
471 PRK10078 ribose 1,5-bisphospho 97.3 0.00025 5.5E-09 50.3 3.2 23 10-32 4-26 (186)
472 PRK05480 uridine/cytidine kina 97.3 0.00026 5.7E-09 51.2 3.4 25 7-31 5-29 (209)
473 COG3840 ThiQ ABC-type thiamine 97.3 0.00026 5.6E-09 49.4 3.0 21 10-30 27-47 (231)
474 smart00382 AAA ATPases associa 97.3 0.00028 6.1E-09 47.0 3.3 25 9-33 3-27 (148)
475 PRK14532 adenylate kinase; Pro 97.3 0.00024 5.1E-09 50.5 3.0 23 9-31 1-23 (188)
476 cd00820 PEPCK_HprK Phosphoenol 97.3 0.00026 5.7E-09 45.2 2.8 21 9-29 16-36 (107)
477 cd01131 PilT Pilus retraction 97.3 0.0012 2.7E-08 47.3 6.7 22 11-32 4-25 (198)
478 TIGR02322 phosphon_PhnN phosph 97.2 0.00026 5.7E-09 49.8 3.0 22 10-31 3-24 (179)
479 KOG0780 Signal recognition par 97.2 0.0012 2.6E-08 51.2 6.5 94 5-98 98-231 (483)
480 PRK13949 shikimate kinase; Pro 97.2 0.00031 6.8E-09 49.1 3.1 23 9-31 2-24 (169)
481 PRK10751 molybdopterin-guanine 97.2 0.00037 8.1E-09 48.6 3.5 24 8-31 6-29 (173)
482 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00028 6.1E-09 50.0 3.0 22 9-30 4-25 (188)
483 COG1117 PstB ABC-type phosphat 97.2 0.00025 5.4E-09 50.7 2.5 19 11-29 36-54 (253)
484 PRK08233 hypothetical protein; 97.2 0.00034 7.4E-09 49.3 3.3 23 9-31 4-26 (182)
485 cd02023 UMPK Uridine monophosp 97.2 0.00029 6.2E-09 50.5 3.0 21 11-31 2-22 (198)
486 cd03111 CpaE_like This protein 97.2 0.0013 2.8E-08 42.1 5.7 101 14-126 6-106 (106)
487 TIGR03263 guanyl_kin guanylate 97.2 0.00032 6.8E-09 49.5 3.0 22 10-31 3-24 (180)
488 cd03110 Fer4_NifH_child This p 97.2 0.0057 1.2E-07 43.0 9.3 84 56-155 92-175 (179)
489 cd01120 RecA-like_NTPases RecA 97.2 0.0025 5.4E-08 43.7 7.4 21 11-31 2-22 (165)
490 COG3638 ABC-type phosphate/pho 97.2 0.00032 7E-09 50.8 2.8 20 11-30 33-52 (258)
491 PF07015 VirC1: VirC1 protein; 97.2 0.0019 4.1E-08 47.0 6.7 103 57-171 84-188 (231)
492 PRK07429 phosphoribulokinase; 97.2 0.00049 1.1E-08 53.2 3.9 30 1-30 1-30 (327)
493 KOG3347 Predicted nucleotide k 97.2 0.00033 7.1E-09 47.1 2.5 25 6-30 5-29 (176)
494 PRK10646 ADP-binding protein; 97.2 0.0044 9.5E-08 42.3 8.0 24 9-32 29-52 (153)
495 PRK06547 hypothetical protein; 97.2 0.00046 1E-08 48.3 3.4 26 6-31 13-38 (172)
496 PRK02496 adk adenylate kinase; 97.2 0.00043 9.4E-09 49.0 3.3 23 9-31 2-24 (184)
497 cd02025 PanK Pantothenate kina 97.1 0.00036 7.8E-09 50.9 2.8 21 11-31 2-22 (220)
498 PRK14531 adenylate kinase; Pro 97.1 0.00042 9.1E-09 49.1 3.1 23 9-31 3-25 (183)
499 PRK01889 GTPase RsgA; Reviewed 97.1 0.00054 1.2E-08 53.7 3.9 24 9-32 196-219 (356)
500 cd01428 ADK Adenylate kinase ( 97.1 0.00036 7.8E-09 49.7 2.8 22 10-31 1-22 (194)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-42 Score=234.88 Aligned_cols=199 Identities=38% Similarity=0.678 Sum_probs=179.5
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc
Q 028647 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (206)
|+..-++.|||+|+|.+|+|||.|+.||..+.|.+.+.+|.|.++..+.+.++++.+.+++|||+||++|+....+++++
T Consensus 2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 45566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCc-EEEeec
Q 028647 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIP-YFETSA 159 (206)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S~ 159 (206)
+|++|+|||+++.+||..+..|+.++...... ++|.++|+||+|+.+. +.+..++++.|+..++ .+ ++++||
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~----~v~~lLVGNK~Dl~~~--~~v~~~~a~~fa~~~~-~~~f~ETSA 154 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASE----NVPKLLVGNKCDLTEK--RVVSTEEAQEFADELG-IPIFLETSA 154 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhhccC----CCCeEEEeeccccHhh--eecCHHHHHHHHHhcC-Ccceeeccc
Confidence 99999999999999999999999999888776 7899999999999987 8999999999999998 66 999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCccccccC---CcccccCC-CCCCCCCCccC
Q 028647 160 KEGINVEEAFQCIAKNALKSGEEEEIYL---PDTIDVGN-SSQPRSSGCEC 206 (206)
Q Consensus 160 ~~~~~i~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~gc~~ 206 (206)
+++.|+++.|..|...+..+........ +..+++.. +.....+||||
T Consensus 155 K~~~NVe~~F~~la~~lk~~~~~~~~~~~~~~~~~ql~~~p~~~~~~~~C~ 205 (205)
T KOG0084|consen 155 KDSTNVEDAFLTLAKELKQRKGLHVKWSTASLESVQLKGTPVKKSNGGCCE 205 (205)
T ss_pred CCccCHHHHHHHHHHHHHHhcccCCCCCcCCCCceeeCCCCcccccCCCCC
Confidence 9999999999999999988877665544 55666666 33444555853
No 2
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.3e-41 Score=228.65 Aligned_cols=206 Identities=77% Similarity=1.202 Sum_probs=185.9
Q ss_pred CCc-ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhc
Q 028647 1 MPS-RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR 79 (206)
Q Consensus 1 ~~~-~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 79 (206)
|.. ++...++|.++|.+|+|||||++++...+|...+..+.+.++..+++.++++.+.+++|||+|+++|.++-..+++
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence 555 5577899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA 159 (206)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 159 (206)
++|+.+++||++++.||+.+..|..+++....+..+...|+||++||+|+.+...++++.+.++.|+...++++++++||
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA 160 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA 160 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence 99999999999999999999999999999999999889999999999999988889999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCcccc---ccCCcccccCCCCCCCCCCccC
Q 028647 160 KEGINVEEAFQCIAKNALKSGEEEE---IYLPDTIDVGNSSQPRSSGCEC 206 (206)
Q Consensus 160 ~~~~~i~~l~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~gc~~ 206 (206)
++..|+++.|+.+.+.++....... ......+....+..+.++||.|
T Consensus 161 K~~~NV~~AFe~ia~~aL~~E~~~~~~~~~~~d~i~~~~~~~~~~~~c~c 210 (210)
T KOG0394|consen 161 KEATNVDEAFEEIARRALANEDREIAELADYSDQIVLSTKANNQSSGCEC 210 (210)
T ss_pred cccccHHHHHHHHHHHHHhccchhhhhhhhcCcccccccccccCCCCCCC
Confidence 9999999999999999998775422 2344444444444555556667
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-40 Score=224.74 Aligned_cols=194 Identities=44% Similarity=0.735 Sum_probs=175.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
...+||+++|..++|||||+.|+..+.|.+...+|+|..+....+.+++..+++.||||+|+++|.++...++++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|||+++.+||..+..|+.++.+...+ ++-+.+|+||+||.+. +.+..++++.++...+ ..++++||++|.|+
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~----~~vialvGNK~DL~~~--R~V~~~ea~~yAe~~g-ll~~ETSAKTg~Nv 155 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASP----NIVIALVGNKADLLER--REVEFEEAQAYAESQG-LLFFETSAKTGENV 155 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCC----CeEEEEecchhhhhhc--ccccHHHHHHHHHhcC-CEEEEEecccccCH
Confidence 999999999999999999999887763 7778899999999986 8899999999999987 89999999999999
Q ss_pred HHHHHHHHHHHHhcCccccccCC---cccccCCC-CCCCCCCccC
Q 028647 166 EEAFQCIAKNALKSGEEEEIYLP---DTIDVGNS-SQPRSSGCEC 206 (206)
Q Consensus 166 ~~l~~~l~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~gc~~ 206 (206)
+++|..|.+.++....+.....+ ..+.+... ...+++||||
T Consensus 156 ~~if~~Ia~~lp~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~C~ 200 (200)
T KOG0092|consen 156 NEIFQAIAEKLPCSDPQERQGLPNRRQGVDLNSNQEPARPSGCCA 200 (200)
T ss_pred HHHHHHHHHhccCccccccccccccccceecccCCCCcCcCCcCC
Confidence 99999999999998888775333 33444322 4677888965
No 4
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-37 Score=210.98 Aligned_cols=175 Identities=39% Similarity=0.610 Sum_probs=160.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
+.+|++++|..++||||||++|..+.+...+.+|.|.++....+.+.++.+.+++|||+||++|+.+...+++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE 166 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (206)
|||+++..||+...+|+..+...... .++-+++|+||.||.+. ++...++....++.++ +.|+++||+.|.|++
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs---~~viI~LVGnKtDL~dk--rqvs~eEg~~kAkel~-a~f~etsak~g~NVk 174 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGS---DDVIIFLVGNKTDLSDK--RQVSIEEGERKAKELN-AEFIETSAKAGENVK 174 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCC---CceEEEEEcccccccch--hhhhHHHHHHHHHHhC-cEEEEecccCCCCHH
Confidence 99999999999999999998765443 24678899999999988 8999999999999998 799999999999999
Q ss_pred HHHHHHHHHHHhcCccccccC
Q 028647 167 EAFQCIAKNALKSGEEEEIYL 187 (206)
Q Consensus 167 ~l~~~l~~~~~~~~~~~~~~~ 187 (206)
.+|..|...++..........
T Consensus 175 ~lFrrIaa~l~~~~~~~~~~~ 195 (221)
T KOG0094|consen 175 QLFRRIAAALPGMEVLEILSK 195 (221)
T ss_pred HHHHHHHHhccCccccccccc
Confidence 999999988887765444444
No 5
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.5e-37 Score=221.18 Aligned_cols=195 Identities=36% Similarity=0.677 Sum_probs=163.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC-CeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (206)
+||+|+|++|||||||+++|..+.+...+.++.+.++....+.++ +..+.+.+||++|++.+...+..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999888888988888877778887 7788999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167 (206)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (206)
||++++++++.+..|+..+..........++|+++|+||+|+... +....+++.++++..+..+++++||++|.|+++
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e 158 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKR--LAKDGEQMDQFCKENGFIGWFETSAKEGINIEE 158 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccc--cccCHHHHHHHHHHcCCceEEEEeCCCCCCHHH
Confidence 999999999999999888765443322347899999999999753 556788889999888767899999999999999
Q ss_pred HHHHHHHHHHhcCccccccCC-----cccccCCCCCCCCCCccC
Q 028647 168 AFQCIAKNALKSGEEEEIYLP-----DTIDVGNSSQPRSSGCEC 206 (206)
Q Consensus 168 l~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~gc~~ 206 (206)
+|++|++.+...........+ ......++...+++|| |
T Consensus 159 ~f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 201 (201)
T cd04107 159 AMRFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGC-C 201 (201)
T ss_pred HHHHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCC-C
Confidence 999999999887654444432 2233345556677799 5
No 6
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-36 Score=210.20 Aligned_cols=174 Identities=41% Similarity=0.727 Sum_probs=165.1
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
..++.++|+++|.++||||+++.+|..+.+...+..+.+.++..+.+..++..+.+++|||+||+++......+++.+++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI 163 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (206)
+++|||+++..||+.+..|+..+..+... ++|.++|+||+|+... +++..+..++++..++ +.|+++||++|.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~----~v~~~LvGNK~D~~~~--R~V~~e~ge~lA~e~G-~~F~EtSAk~~~ 160 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASD----DVVKILVGNKCDLEEK--RQVSKERGEALAREYG-IKFFETSAKTNF 160 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCC----CCcEEEeecccccccc--ccccHHHHHHHHHHhC-CeEEEccccCCC
Confidence 99999999999999999999999887765 8999999999999886 8999999999999997 999999999999
Q ss_pred CHHHHHHHHHHHHHhcCcccc
Q 028647 164 NVEEAFQCIAKNALKSGEEEE 184 (206)
Q Consensus 164 ~i~~l~~~l~~~~~~~~~~~~ 184 (206)
||++.|-.|.+.++.+.+..+
T Consensus 161 NI~eaF~~La~~i~~k~~~~~ 181 (207)
T KOG0078|consen 161 NIEEAFLSLARDILQKLEDAE 181 (207)
T ss_pred CHHHHHHHHHHHHHhhcchhh
Confidence 999999999999997666644
No 7
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.3e-36 Score=200.10 Aligned_cols=183 Identities=34% Similarity=0.586 Sum_probs=164.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
...++|+++|.+|+|||||+.+|+...|.+....+.|.++.++.+.+++..+++.||||+|+++|+.+...+++.+.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|||++.+++|..+..|+.++....... ++-.++|+||+|.... +.++.++...|++... +-|+++||++.+|+
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~---diikmlVgNKiDkes~--R~V~reEG~kfAr~h~-~LFiE~SAkt~~~V 162 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNP---DIIKMLVGNKIDKESE--RVVDREEGLKFARKHR-CLFIECSAKTRENV 162 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCc---cHhHhhhcccccchhc--ccccHHHHHHHHHhhC-cEEEEcchhhhccH
Confidence 9999999999999999999998776643 6778899999997754 8899999999999998 88999999999999
Q ss_pred HHHHHHHHHHHHhcCccccc-cCCcccccC
Q 028647 166 EEAFQCIAKNALKSGEEEEI-YLPDTIDVG 194 (206)
Q Consensus 166 ~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~ 194 (206)
+..|+.++..+++.+.--+. ...+...+.
T Consensus 163 ~~~FeelveKIi~tp~l~~~~n~~~~~~i~ 192 (209)
T KOG0080|consen 163 QCCFEELVEKIIETPSLWEEGNSSAGLDIA 192 (209)
T ss_pred HHHHHHHHHHHhcCcchhhccCCccccccc
Confidence 99999999999887665543 333444444
No 8
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.7e-35 Score=209.91 Aligned_cols=172 Identities=30% Similarity=0.553 Sum_probs=153.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
+..+||+|+|..|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999998888777788888887788888998999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|||++++.+++.+..|+.++..... +.|+++|+||.|+.+. +.+..++++.+++..+ ++++++||++|.|+
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~~-----~~piilVGNK~DL~~~--~~v~~~~~~~~a~~~~-~~~~e~SAk~g~~V 155 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHAP-----GVPKILVGNRLHLAFK--RQVATEQAQAYAERNG-MTFFEVSPLCNFNI 155 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECccchhc--cCCCHHHHHHHHHHcC-CEEEEecCCCCCCH
Confidence 99999999999999999999966542 7899999999999765 5677889999998887 89999999999999
Q ss_pred HHHHHHHHHHHHhcCccccc
Q 028647 166 EEAFQCIAKNALKSGEEEEI 185 (206)
Q Consensus 166 ~~l~~~l~~~~~~~~~~~~~ 185 (206)
+++|++|.+.++.+...++.
T Consensus 156 ~~~F~~l~~~i~~~~~~~~~ 175 (189)
T cd04121 156 TESFTELARIVLMRHGRPPQ 175 (189)
T ss_pred HHHHHHHHHHHHHhcCCCCC
Confidence 99999999988765554443
No 9
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2e-35 Score=211.02 Aligned_cols=190 Identities=41% Similarity=0.649 Sum_probs=161.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (206)
+||+|+|++|||||||+++|..+.+.. .+.++.+.++....+.+++..+.+.|||+||++.+......+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988764 5667777777666778888889999999999999988888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167 (206)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (206)
+|++++++++.+..|+..+...... ++|+++|+||+|+... +....++...+...++ .+++++||++|.|+++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~NK~Dl~~~--~~~~~~~~~~l~~~~~-~~~~e~Sa~~~~~v~~ 153 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQE----DVVIMLLGNKADMSGE--RVVKREDGERLAKEYG-VPFMETSAKTGLNVEL 153 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEEcccchhc--cccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHH
Confidence 9999999999999999888765432 7899999999999754 4556677788887776 7999999999999999
Q ss_pred HHHHHHHHHHhcCccccccCCcccccCCCCCCCCCCccC
Q 028647 168 AFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 206 (206)
Q Consensus 168 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gc~~ 206 (206)
+|++|.+.+.......+...+.......+...+.++| |
T Consensus 154 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 191 (191)
T cd04112 154 AFTAVAKELKHRKYEQPDEGKFKISDYVTKQKKISRC-C 191 (191)
T ss_pred HHHHHHHHHHHhccccCCCCcEEeccccCcccccCCC-C
Confidence 9999999999887665554444555667788899999 5
No 10
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2.1e-35 Score=211.32 Aligned_cols=168 Identities=38% Similarity=0.669 Sum_probs=149.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
++|+++|..|+|||||+++|..+.|...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999998888899988888888899998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l 168 (206)
|++++++++.+..|+..+..... .+.|+++|+||+|+.+. +.+..++.+++++...++.++++||++|.|++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~----~~~piilVgNK~DL~~~--~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~ 154 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYAS----EDAELLLVGNKLDCETD--REISRQQGEKFAQQITGMRFCEASAKDNFNVDEI 154 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHH
Confidence 99999999999999887654432 27899999999999764 6677888888887764588999999999999999
Q ss_pred HHHHHHHHHhcCcc
Q 028647 169 FQCIAKNALKSGEE 182 (206)
Q Consensus 169 ~~~l~~~~~~~~~~ 182 (206)
|+++++.+.+..+.
T Consensus 155 F~~l~~~~~~~~~~ 168 (202)
T cd04120 155 FLKLVDDILKKMPL 168 (202)
T ss_pred HHHHHHHHHHhCcc
Confidence 99999988775433
No 11
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-35 Score=200.53 Aligned_cols=173 Identities=38% Similarity=0.654 Sum_probs=161.5
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
..+.+|+.++|..|+|||.|+.+|+..+|.+.+..|.|.++-.+.+.++++.+++++|||+|++.+.+....+++.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN 164 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (206)
|+|||+++.++|..+..|+..+..+..+ +..+++++||+||... +.++.++.+.|+++.+ ..++++||++++|
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~----NmvImLiGNKsDL~~r--R~Vs~EEGeaFA~ehg-LifmETSakt~~~ 155 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNE----NMVIMLIGNKSDLEAR--REVSKEEGEAFAREHG-LIFMETSAKTAEN 155 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCC----CcEEEEEcchhhhhcc--ccccHHHHHHHHHHcC-ceeehhhhhhhhh
Confidence 9999999999999999999999877644 8899999999999887 7899999999999966 8899999999999
Q ss_pred HHHHHHHHHHHHHhcCcccc
Q 028647 165 VEEAFQCIAKNALKSGEEEE 184 (206)
Q Consensus 165 i~~l~~~l~~~~~~~~~~~~ 184 (206)
+++.|......++.....+-
T Consensus 156 VEEaF~nta~~Iy~~~q~g~ 175 (216)
T KOG0098|consen 156 VEEAFINTAKEIYRKIQDGV 175 (216)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 99999999999887665543
No 12
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=6.9e-35 Score=208.04 Aligned_cols=188 Identities=28% Similarity=0.448 Sum_probs=157.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (206)
+|+|+|.+|+|||||+++|..+.+...+.++.+..+ .....+++..+.+.+||++|++.+...+..+++.+|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999999888877777776554 4456678888899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHH
Q 028647 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169 (206)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~ 169 (206)
++++.+++.+..|+..+...... ...+.|+++|+||+|+.+. +....++..++...++ ++++++||++|.|++++|
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilvgNK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDE-SAADVPIMIVGNKCDKVYE--REVSTEEGAALARRLG-CEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcc-cCCCCCEEEEEEChhcccc--CccCHHHHHHHHHHhC-CEEEEecCCCCCCHHHHH
Confidence 99999999999998888765432 1237899999999999764 4556667778887777 789999999999999999
Q ss_pred HHHHHHHHhcCccccccCCcccccCCCCCCCCCCccC
Q 028647 170 QCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 206 (206)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gc~~ 206 (206)
+++++.+......+. ++......++.|+.+|||
T Consensus 156 ~~l~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~ 188 (190)
T cd04144 156 YTLVRALRQQRQGGQ----GPKGGPTKKKEKKKRKCV 188 (190)
T ss_pred HHHHHHHHHhhcccC----CCcCCCCCcccccccCce
Confidence 999999887766653 335566777888888865
No 13
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=2e-34 Score=206.27 Aligned_cols=190 Identities=33% Similarity=0.588 Sum_probs=158.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (206)
+||+|+|++|+|||||+++|+.+.+.. .+.++.+..+....+.+++..+.+.+||++|++++......+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999988874 5777777777777888899889999999999999988888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--cccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN--SRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
||++++.+++.+..|+..+..... +.|+++|+||+|+.... .+....+++.++...++ ++++++||+++.|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gv 154 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEE-----HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-AQHFETSSKTGQNV 154 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCC-----CCCEEEEEEcccccccccccCccCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence 999999999998889888765322 78999999999986532 23445567777777776 78999999999999
Q ss_pred HHHHHHHHHHHHhcCccccccCCcccccCCCCCCCCCCccC
Q 028647 166 EEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 206 (206)
Q Consensus 166 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gc~~ 206 (206)
+++|+++.+.+.+....+.... ..+.+.....++.+|| |
T Consensus 155 ~~l~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~ 193 (193)
T cd04118 155 DELFQKVAEDFVSRANNQMNTE-KGVDLGQKKNSYFYSC-C 193 (193)
T ss_pred HHHHHHHHHHHHHhcccccCCC-CccccCCcCCCCCCCC-C
Confidence 9999999999987765543433 5566666777788889 5
No 14
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.2e-34 Score=208.14 Aligned_cols=171 Identities=34% Similarity=0.658 Sum_probs=150.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEe-CCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||++|++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999988888888888887777776 4567899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE 166 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (206)
|||++++++++.+..|+..+...... ...|+++|+||.|+... +....++..++++..+ .+++++|+++|.|++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~---~~~~iilvgNK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~g~~v~ 155 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQP---HRPVFILVGHKCDLESQ--RQVTREEAEKLAKDLG-MKYIETSARTGDNVE 155 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC---CCCeEEEEEEccccccc--cccCHHHHHHHHHHhC-CEEEEEeCCCCCCHH
Confidence 99999999999999999988765433 25789999999999764 5677788888888887 899999999999999
Q ss_pred HHHHHHHHHHHhcCcccc
Q 028647 167 EAFQCIAKNALKSGEEEE 184 (206)
Q Consensus 167 ~l~~~l~~~~~~~~~~~~ 184 (206)
++|++|++.+.+..+..+
T Consensus 156 e~f~~l~~~~~~~~~~~~ 173 (211)
T cd04111 156 EAFELLTQEIYERIKRGE 173 (211)
T ss_pred HHHHHHHHHHHHHhhcCC
Confidence 999999999988876665
No 15
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=3.4e-34 Score=208.02 Aligned_cols=169 Identities=38% Similarity=0.679 Sum_probs=149.9
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 46799999999999999999999999888788888888888888889998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+. +....++...+....+ .+++++||++|.|+
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~----~~~piiiv~nK~Dl~~~--~~~~~~~~~~l~~~~~-~~~~e~SA~~g~~v 162 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDHAD----SNIVIMMAGNKSDLNHL--RSVAEEDGQALAEKEG-LSFLETSALEATNV 162 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhCC----CCCeEEEEEEChhcccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 99999999999999999988766543 27899999999999764 5566777888877765 89999999999999
Q ss_pred HHHHHHHHHHHHhcCc
Q 028647 166 EEAFQCIAKNALKSGE 181 (206)
Q Consensus 166 ~~l~~~l~~~~~~~~~ 181 (206)
+++|+++++.+.+...
T Consensus 163 ~~lf~~l~~~i~~~~~ 178 (216)
T PLN03110 163 EKAFQTILLEIYHIIS 178 (216)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998877433
No 16
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9e-35 Score=200.13 Aligned_cols=173 Identities=35% Similarity=0.659 Sum_probs=162.0
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
.-++.|||+++|.+++|||-|+.+|....|.....+|.|..+....+.++++.+..+||||+||++|+.....+++.+.+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI 163 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (206)
+++|||++...+|+.+.+|+.++..+... ++++++|+||+||.+. +.+..++.+.++...+ ..++++||.++.
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdhad~----nivimLvGNK~DL~~l--raV~te~~k~~Ae~~~-l~f~EtSAl~~t 162 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDHADS----NIVIMLVGNKSDLNHL--RAVPTEDGKAFAEKEG-LFFLETSALDAT 162 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhcCCC----CeEEEEeecchhhhhc--cccchhhhHhHHHhcC-ceEEEecccccc
Confidence 99999999999999999999999888765 8999999999999885 8889999999998887 899999999999
Q ss_pred CHHHHHHHHHHHHHhcCccc
Q 028647 164 NVEEAFQCIAKNALKSGEEE 183 (206)
Q Consensus 164 ~i~~l~~~l~~~~~~~~~~~ 183 (206)
|+++.|+.++..+++...+.
T Consensus 163 NVe~aF~~~l~~I~~~vs~k 182 (222)
T KOG0087|consen 163 NVEKAFERVLTEIYKIVSKK 182 (222)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887654443
No 17
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=5.4e-34 Score=204.74 Aligned_cols=192 Identities=39% Similarity=0.668 Sum_probs=159.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++++|+++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 35799999999999999999999999888788888888887888888888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|+|++++++++.+..|+..+..... ..|+++|+||+|+.+. .....++...+....+ .+++++|+++|.|+
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~~-----~~piivVgNK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~gi 155 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNCD-----DVCKVLVGNKNDDPER--KVVETEDAYKFAGQMG-ISLFETSAKENINV 155 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEECCCCcCH
Confidence 99999999999999999988765543 6899999999999764 4556777888887777 88999999999999
Q ss_pred HHHHHHHHHHHHhcCccccccCCc----ccccCCCCCCCCCCccC
Q 028647 166 EEAFQCIAKNALKSGEEEEIYLPD----TIDVGNSSQPRSSGCEC 206 (206)
Q Consensus 166 ~~l~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~gc~~ 206 (206)
+++|++|.+.++...........- ...-.....+|++-| |
T Consensus 156 ~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 199 (199)
T cd04110 156 EEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRC-C 199 (199)
T ss_pred HHHHHHHHHHHHHhhhccCcccccCCccccCccchhccccccC-C
Confidence 999999999998765544332111 122334445677778 5
No 18
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=192.51 Aligned_cols=167 Identities=45% Similarity=0.765 Sum_probs=157.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
...++.+++|.+|+|||+|+.+|..+.|...|..++|.++..+++.+.+..++++|||++|++.|+.+...+++..++++
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|||.++.+||.+..+|++++...+. .+|-++|+||.|.++. +.+..++++.|+...+ +.++++|+++++|+
T Consensus 86 vVYDVTn~ESF~Nv~rWLeei~~ncd-----sv~~vLVGNK~d~~~R--rvV~t~dAr~~A~~mg-ie~FETSaKe~~Nv 157 (198)
T KOG0079|consen 86 VVYDVTNGESFNNVKRWLEEIRNNCD-----SVPKVLVGNKNDDPER--RVVDTEDARAFALQMG-IELFETSAKENENV 157 (198)
T ss_pred EEEECcchhhhHhHHHHHHHHHhcCc-----cccceecccCCCCccc--eeeehHHHHHHHHhcC-chheehhhhhcccc
Confidence 99999999999999999999988876 7899999999999887 8889999999999998 99999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 028647 166 EEAFQCIAKNALKSG 180 (206)
Q Consensus 166 ~~l~~~l~~~~~~~~ 180 (206)
+..|.-|.+.++...
T Consensus 158 E~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 158 EAMFHCITKQVLQAK 172 (198)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999988887654
No 19
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=9.7e-34 Score=205.69 Aligned_cols=167 Identities=35% Similarity=0.543 Sum_probs=147.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCC-eEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (206)
+||+++|.+|+|||||+++|.+..+...+.++.+.+++...+.+++ ..+.+.+||++|++.+...+..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888999999888888887765 568999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167 (206)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (206)
||++++++++.+..|+..+....... ..+.|+++|+||+|+.+. +....++...+++.++ .+++++||++|+|+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~-~~~~piilVgNK~DL~~~--~~v~~~~~~~~~~~~~-~~~~~iSAktg~gv~~ 156 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSS-ETQPLVVLVGNKTDLEHN--RTVKDDKHARFAQANG-MESCLVSAKTGDRVNL 156 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcccc-CCCceEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence 99999999999999999887765422 125789999999999754 5677788888888877 7899999999999999
Q ss_pred HHHHHHHHHHhc
Q 028647 168 AFQCIAKNALKS 179 (206)
Q Consensus 168 l~~~l~~~~~~~ 179 (206)
+|++|++.+...
T Consensus 157 lf~~l~~~l~~~ 168 (215)
T cd04109 157 LFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 20
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=4.8e-34 Score=201.57 Aligned_cols=168 Identities=22% Similarity=0.458 Sum_probs=147.5
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
++..++|+++|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+......+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 35578999999999999999999999999888888887665 45677899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CcccccHHHHHHHHHhcCCCc
Q 028647 85 VLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG----------NSRVVSEKKARAWCASKGNIP 153 (206)
Q Consensus 85 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~ 153 (206)
++|||++++.+|+.+ ..|...+..... +.|+++|+||+|+.+. ..+.+..++++++++..+..+
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-----~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 155 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAAT 155 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCE
Confidence 999999999999997 789988876542 7899999999998642 225688899999999998558
Q ss_pred EEEeeccCCCC-HHHHHHHHHHHHHh
Q 028647 154 YFETSAKEGIN-VEEAFQCIAKNALK 178 (206)
Q Consensus 154 ~~~~S~~~~~~-i~~l~~~l~~~~~~ 178 (206)
|++|||++|.| ++++|+.+++.+++
T Consensus 156 ~~E~SAk~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 156 YIECSALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred EEECCcCCCCCCHHHHHHHHHHHHhc
Confidence 99999999998 99999999997654
No 21
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-34 Score=189.75 Aligned_cols=181 Identities=39% Similarity=0.621 Sum_probs=169.1
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc
Q 028647 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (206)
|++.-++.++++++|+.|+|||.|+++|+...+.+....+.+.++..+.+.+.++.++++||||+|+++|++..+.+++.
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 45567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (206)
+.+.++|||+++.++|+.+..|+........+ ++-+++++||.||.++ +++...+..+|++... ..++++|+.
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~----nIvviL~GnKkDL~~~--R~VtflEAs~FaqEne-l~flETSa~ 154 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASP----NIVVILCGNKKDLDPE--REVTFLEASRFAQENE-LMFLETSAL 154 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCC----cEEEEEeCChhhcChh--hhhhHHHHHhhhcccc-eeeeeeccc
Confidence 99999999999999999999999998776654 7889999999999887 8899999999999988 789999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCccccccCC
Q 028647 161 EGINVEEAFQCIAKNALKSGEEEEIYLP 188 (206)
Q Consensus 161 ~~~~i~~l~~~l~~~~~~~~~~~~~~~~ 188 (206)
+|+|+++.|-...+.++.+.+.++.+.+
T Consensus 155 TGeNVEEaFl~c~~tIl~kIE~GElDPe 182 (214)
T KOG0086|consen 155 TGENVEEAFLKCARTILNKIESGELDPE 182 (214)
T ss_pred ccccHHHHHHHHHHHHHHHHhhcCCCHH
Confidence 9999999999999999999988888643
No 22
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1e-33 Score=197.96 Aligned_cols=164 Identities=37% Similarity=0.674 Sum_probs=145.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (206)
.+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999998888888888888777788888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167 (206)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (206)
||++++++++.+..|+..+..... ++.|+++|+||+|+... +....+++.+++...+ .+++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~e 154 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTN----PNTVIFLIGNKADLEAQ--RDVTYEEAKQFADENG-LLFLECSAKTGENVED 154 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cCcCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence 999999999999999988765432 26899999999999765 5567788888888776 8999999999999999
Q ss_pred HHHHHHHHHHh
Q 028647 168 AFQCIAKNALK 178 (206)
Q Consensus 168 l~~~l~~~~~~ 178 (206)
+|..+++.+++
T Consensus 155 ~f~~l~~~~~~ 165 (166)
T cd04122 155 AFLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 23
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=6.4e-34 Score=205.78 Aligned_cols=187 Identities=35% Similarity=0.609 Sum_probs=147.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
++|+|+|.+|+|||||+++|..+.+.. ..++.+.++....+ ..+.+.+||++|++.+...+..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998864 46666655544332 4578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------------CcccccHHHHHHHHHhcCC
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG-----------------NSRVVSEKKARAWCASKGN 151 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------------~~~~~~~~~~~~~~~~~~~ 151 (206)
|++++++|+.+..|+..+..... .+.|+++|+||+|+.+. ..+.+..++++.+++..+.
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~----~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~ 151 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTAN----EDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINK 151 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCc
Confidence 99999999999888777765422 27899999999999751 1367788899999888652
Q ss_pred -------------CcEEEeeccCCCCHHHHHHHHHHHHHhcCccccc---cCCcccccCCCCCCCCCCccC
Q 028647 152 -------------IPYFETSAKEGINVEEAFQCIAKNALKSGEEEEI---YLPDTIDVGNSSQPRSSGCEC 206 (206)
Q Consensus 152 -------------~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gc~~ 206 (206)
.+|++|||++|.|++++|..+++.++....+... ...-.+..+. .+.++++| |
T Consensus 152 ~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~ 220 (220)
T cd04126 152 YKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPN-PKRSKSKC-C 220 (220)
T ss_pred cccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCC-cccCCCCC-C
Confidence 5799999999999999999999887754433333 2233444444 35567889 5
No 24
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.1e-33 Score=200.17 Aligned_cols=170 Identities=48% Similarity=0.774 Sum_probs=148.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
++|+|+|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999988778888888887778888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l 168 (206)
|++++++++.+..|+..+...... +.|+++|+||.|+.+. .....++...++...+ ++++++||++|.|++++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~----~~~~ivv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~evSa~~~~~i~~~ 153 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARE----NVIKVIVANKSDLVNN--KVVDSNIAKSFCDSLN-IPFFETSAKQSINVEEA 153 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECCCCccc--ccCCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence 999999999999999888765432 5799999999999765 4556677777777776 78999999999999999
Q ss_pred HHHHHHHHHhcCccccc
Q 028647 169 FQCIAKNALKSGEEEEI 185 (206)
Q Consensus 169 ~~~l~~~~~~~~~~~~~ 185 (206)
|++|++.+.++....+.
T Consensus 154 f~~l~~~~~~~~~~~~~ 170 (188)
T cd04125 154 FILLVKLIIKRLEEQEL 170 (188)
T ss_pred HHHHHHHHHHHhhcCcC
Confidence 99999999876655543
No 25
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1.6e-33 Score=197.17 Aligned_cols=165 Identities=43% Similarity=0.755 Sum_probs=147.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
..+||+++|++|+|||||++++.+..+...+.++.+.++....+.+.+..+.+.+||++|++.+......+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999999988888988888877888888888999999999999998888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE 166 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (206)
|+|++++++++.+..|+..+..... .+.|+++|+||+|+.+. +....++...++...+ .+++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 154 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHAS----EDVERMLVGNKCDMEEK--RVVSKEEGEALADEYG-IKFLETSAKANINVE 154 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence 9999999999999999998876532 27899999999999864 4556777888888776 789999999999999
Q ss_pred HHHHHHHHHHHh
Q 028647 167 EAFQCIAKNALK 178 (206)
Q Consensus 167 ~l~~~l~~~~~~ 178 (206)
++|+++.+.+..
T Consensus 155 ~~~~~i~~~~~~ 166 (167)
T cd01867 155 EAFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 26
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.1e-33 Score=198.55 Aligned_cols=163 Identities=32% Similarity=0.572 Sum_probs=143.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
+||+++|.+|+|||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++++......+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888899887665 455678888899999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--------cccccHHHHHHHHHhcCCCcEEEeec
Q 028647 89 DVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN--------SRVVSEKKARAWCASKGNIPYFETSA 159 (206)
Q Consensus 89 d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~S~ 159 (206)
|+++++||+.+ ..|+..+..... ++|+++|+||+|+.+.. .+.+..++++.+++..+...+++|||
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~-----~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 155 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAP-----NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSS 155 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCC
Confidence 99999999998 689988865432 78999999999996542 13477889999999887346999999
Q ss_pred cCCCCHHHHHHHHHHHHH
Q 028647 160 KEGINVEEAFQCIAKNAL 177 (206)
Q Consensus 160 ~~~~~i~~l~~~l~~~~~ 177 (206)
++|.|++++|+.+++.++
T Consensus 156 k~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 156 KTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred CcccCHHHHHHHHHHHHh
Confidence 999999999999999764
No 27
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3e-34 Score=189.47 Aligned_cols=181 Identities=37% Similarity=0.673 Sum_probs=163.1
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEe-CCeEEEEEEEeCCChhhhccchhhhhccCc
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (206)
.-.+.+++.|+|.+-+|||+|++.|+.+++..-.+|+.|.++..+.+.. .+..+++++|||+|++++++..+.+++++-
T Consensus 4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv 83 (213)
T KOG0091|consen 4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV 83 (213)
T ss_pred ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence 4467899999999999999999999999999999999999988777766 466789999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG 162 (206)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 162 (206)
++++|||+++.+||+.+..|+.+-....+ .+.++-+.+|++|+||... ++++.+++++++...+ ..|+++|+++|
T Consensus 84 gvllvyditnr~sfehv~~w~~ea~m~~q--~P~k~VFlLVGhKsDL~Sq--RqVt~EEaEklAa~hg-M~FVETSak~g 158 (213)
T KOG0091|consen 84 GVLLVYDITNRESFEHVENWVKEAAMATQ--GPDKVVFLLVGHKSDLQSQ--RQVTAEEAEKLAASHG-MAFVETSAKNG 158 (213)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHHhcC--CCCeeEEEEeccccchhhh--ccccHHHHHHHHHhcC-ceEEEecccCC
Confidence 99999999999999999999998877665 2324557899999999976 9999999999999887 99999999999
Q ss_pred CCHHHHHHHHHHHHHhcCccccccCCc
Q 028647 163 INVEEAFQCIAKNALKSGEEEEIYLPD 189 (206)
Q Consensus 163 ~~i~~l~~~l~~~~~~~~~~~~~~~~~ 189 (206)
.|+++.|..|.+.+.....+++..++.
T Consensus 159 ~NVeEAF~mlaqeIf~~i~qGeik~ed 185 (213)
T KOG0091|consen 159 CNVEEAFDMLAQEIFQAIQQGEIKLED 185 (213)
T ss_pred CcHHHHHHHHHHHHHHHHhcCceeeee
Confidence 999999999999999999888776544
No 28
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2.4e-33 Score=196.92 Aligned_cols=167 Identities=25% Similarity=0.498 Sum_probs=145.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (206)
.++|+|+|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999998878888877555 44567888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167 (206)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (206)
||++++.+++.+..|...+...... .++|+++|+||+|+.+. +....++...+++..+ ++++++||++|.|+++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~---~~~piilvgNK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~Sa~~~~~v~~ 154 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLT---EDIPLVLVGNKVDLESQ--RQVTTEEGRNLAREFN-CPFFETSAALRHYIDD 154 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCC---CCCCEEEEEEChhhhhc--CccCHHHHHHHHHHhC-CEEEEEecCCCCCHHH
Confidence 9999999999999887777654321 27899999999998765 5677788888888876 8999999999999999
Q ss_pred HHHHHHHHHHhcCc
Q 028647 168 AFQCIAKNALKSGE 181 (206)
Q Consensus 168 l~~~l~~~~~~~~~ 181 (206)
+|++|++.+.+..+
T Consensus 155 ~f~~l~~~~~~~~~ 168 (172)
T cd04141 155 AFHGLVREIRRKES 168 (172)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999998876444
No 29
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=3.3e-33 Score=199.39 Aligned_cols=165 Identities=25% Similarity=0.518 Sum_probs=142.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (206)
.++|+++|..|+|||||+.+|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 38999999999999999999999999888888887655 44567888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------ccccHHHHHHHHHhcCCCcEEE
Q 028647 88 YDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------RVVSEKKARAWCASKGNIPYFE 156 (206)
Q Consensus 88 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
||++++.+|+.+. .|...+.... .++|+++|+||.|+.+... +.+..++++.+++..+.+++++
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e 156 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-----PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLE 156 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEE
Confidence 9999999999996 5877665433 2789999999999975421 2356678888888887678999
Q ss_pred eeccCCCCHHHHHHHHHHHHHh
Q 028647 157 TSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 157 ~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
+||++|.|++++|+++++.+..
T Consensus 157 ~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 157 CSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred eCCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999998854
No 30
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.3e-33 Score=196.94 Aligned_cols=163 Identities=23% Similarity=0.459 Sum_probs=143.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
+||+++|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+......+++++|++++||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 7899999999999999999999999888888887665 456778899999999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CcccccHHHHHHHHHhcCCCcEEEe
Q 028647 89 DVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG----------NSRVVSEKKARAWCASKGNIPYFET 157 (206)
Q Consensus 89 d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
|+++++||+.+ ..|...+..... +.|+++|+||+|+.+. ..+.+..++++++++..+..+++++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~-----~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~ 155 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCP-----NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLEC 155 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCC-----CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEEC
Confidence 99999999996 789888876542 7899999999999642 1245788899999999984489999
Q ss_pred eccCCCC-HHHHHHHHHHHHH
Q 028647 158 SAKEGIN-VEEAFQCIAKNAL 177 (206)
Q Consensus 158 S~~~~~~-i~~l~~~l~~~~~ 177 (206)
||++|++ ++++|..+++..+
T Consensus 156 SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 156 SAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred ccCcCCcCHHHHHHHHHHHHh
Confidence 9999995 9999999999765
No 31
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=7.4e-33 Score=193.43 Aligned_cols=163 Identities=38% Similarity=0.708 Sum_probs=142.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
++|+++|++|+|||||+++|.+..+...+.++.+.++....+...+..+.+.+||++|++.+...+..+++++|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988888888887777777777778889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l 168 (206)
|.+++++++.+..|+..+..... .+.|+++|+||+|+.+. +....++..++...++ .+++++||++|.|++++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l 154 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSW----DNAQVILVGNKCDMEDE--RVVSSERGRQLADQLG-FEFFEASAKENINVKQV 154 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC----CCCCEEEEEECcccCcc--cccCHHHHHHHHHHcC-CEEEEEECCCCCCHHHH
Confidence 99999999999999988765432 26899999999999765 4455677777877776 78999999999999999
Q ss_pred HHHHHHHHHh
Q 028647 169 FQCIAKNALK 178 (206)
Q Consensus 169 ~~~l~~~~~~ 178 (206)
|+++++.+..
T Consensus 155 ~~~l~~~~~~ 164 (165)
T cd01865 155 FERLVDIICD 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999987643
No 32
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=5.5e-33 Score=196.71 Aligned_cols=167 Identities=44% Similarity=0.723 Sum_probs=145.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC----------CeEEEEEEEeCCChhhhccchhh
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVA 76 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~ 76 (206)
+.+||+++|++|+|||||++++..+.+...+.++.+.++....+.+. +..+.+.+||+||++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 56999999999999999999999999988888888877766666554 45688999999999999999999
Q ss_pred hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE 156 (206)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
+++++|++++|||+++++++..+..|+..+..... .++.|+++|+||+|+.+. +....++..+++..++ .++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e 156 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY---CENPDIVLCGNKADLEDQ--RQVSEEQAKALADKYG-IPYFE 156 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCcEEEEEeCccchhc--CccCHHHHHHHHHHcC-CeEEE
Confidence 99999999999999999999999999988865532 226799999999999765 5566778888988887 89999
Q ss_pred eeccCCCCHHHHHHHHHHHHHhc
Q 028647 157 TSAKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 157 ~S~~~~~~i~~l~~~l~~~~~~~ 179 (206)
+||++|.|++++|++|.+.++++
T Consensus 157 ~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 157 TSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999988654
No 33
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=6.4e-33 Score=194.64 Aligned_cols=167 Identities=54% Similarity=1.007 Sum_probs=147.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
...++|+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 45699999999999999999999999888877888887777778888999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|||++++++++.+..|...+..........++|+++|+||+|+.. +....+++++++..++..+++++||++|.|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 159 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE---RQVSTEEAQAWCRENGDYPYFETSAKDATNV 159 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc---cccCHHHHHHHHHHCCCCeEEEEECCCCCCH
Confidence 9999999999999999998887765443344789999999999873 5567788888988887668999999999999
Q ss_pred HHHHHHHHHH
Q 028647 166 EEAFQCIAKN 175 (206)
Q Consensus 166 ~~l~~~l~~~ 175 (206)
+++|+++++.
T Consensus 160 ~~~~~~~~~~ 169 (170)
T cd04116 160 AAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 34
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=6.7e-33 Score=201.56 Aligned_cols=171 Identities=20% Similarity=0.386 Sum_probs=148.6
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
+....++|+++|.+|+|||||+++|..+.|...+.++.+..+ ...+.+++..+.+.||||+|++.+......+++++|+
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 345678999999999999999999999999988899987766 4467788999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CcccccHHHHHHHHHhcCCC
Q 028647 84 CVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG----------NSRVVSEKKARAWCASKGNI 152 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~ 152 (206)
+++|||++++++|+.+ ..|+..+..... +.|+++|+||+|+... ..+.+..++++++++..+..
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-----~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~ 162 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYCP-----STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAE 162 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCC
Confidence 9999999999999984 789888876542 6799999999998642 12567888999999999833
Q ss_pred cEEEeeccCCC-CHHHHHHHHHHHHHhcC
Q 028647 153 PYFETSAKEGI-NVEEAFQCIAKNALKSG 180 (206)
Q Consensus 153 ~~~~~S~~~~~-~i~~l~~~l~~~~~~~~ 180 (206)
.|++|||++|. |++++|..++..++++.
T Consensus 163 ~~~EtSAktg~~~V~e~F~~~~~~~~~~~ 191 (232)
T cd04174 163 VYLECSAFTSEKSIHSIFRSASLLCLNKL 191 (232)
T ss_pred EEEEccCCcCCcCHHHHHHHHHHHHHHhc
Confidence 79999999998 89999999999887753
No 35
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=8.3e-33 Score=193.37 Aligned_cols=164 Identities=41% Similarity=0.768 Sum_probs=145.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (206)
.++|+++|++|+|||||++++..+.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999988888888888888888888888888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167 (206)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (206)
+|+++++++..+..|+..+..... ++.|+++|+||.|+... .....++...++...+ ++++++|+++|.|+++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~ 154 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDLTDK--RVVDYSEAQEFADELG-IPFLETSAKNATNVEQ 154 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEEChhcccc--cCCCHHHHHHHHHHcC-CeEEEEECCCCcCHHH
Confidence 999999999999999988865542 27899999999998765 4566777888888776 8999999999999999
Q ss_pred HHHHHHHHHHh
Q 028647 168 AFQCIAKNALK 178 (206)
Q Consensus 168 l~~~l~~~~~~ 178 (206)
+|++|.+.+..
T Consensus 155 ~~~~i~~~~~~ 165 (166)
T cd01869 155 AFMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 36
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.1e-34 Score=184.01 Aligned_cols=170 Identities=37% Similarity=0.678 Sum_probs=158.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
+..++++++|...+|||||+.++.++.+.....++.|.++..+++....+.+.+++|||.|+++++.+...++++++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 56789999999999999999999999999999999999999999888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
++||.++.+||..++.|...+...... +.|+|+|+||+|+..+ +.+..|.++.++.+++ ..++++|++.+.|+
T Consensus 99 LmyDitNeeSf~svqdw~tqIktysw~----naqvilvgnKCDmd~e--Rvis~e~g~~l~~~LG-fefFEtSaK~NinV 171 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKTYSWD----NAQVILVGNKCDMDSE--RVISHERGRQLADQLG-FEFFETSAKENINV 171 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHheeeecc----CceEEEEecccCCccc--eeeeHHHHHHHHHHhC-hHHhhhcccccccH
Confidence 999999999999999999998777554 8999999999999877 8999999999999998 89999999999999
Q ss_pred HHHHHHHHHHHHhcCcc
Q 028647 166 EEAFQCIAKNALKSGEE 182 (206)
Q Consensus 166 ~~l~~~l~~~~~~~~~~ 182 (206)
+.+|+.++..+-....+
T Consensus 172 k~~Fe~lv~~Ic~kmse 188 (193)
T KOG0093|consen 172 KQVFERLVDIICDKMSE 188 (193)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999988665443
No 37
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=5.5e-33 Score=198.08 Aligned_cols=169 Identities=34% Similarity=0.594 Sum_probs=145.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
..++|+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 459999999999999999999999988877778776655 5667788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE 166 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (206)
|+|++++++++.+..|...+..... ..++|+++|+||+|+.+. +....++...+...++ .+++++||++|.|++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~Dl~~~--~~i~~~~~~~~~~~~~-~~~~e~Sak~~~gi~ 156 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKD---KDRVPMILVGNKCDLDSE--RQVSTGEGQELAKSFG-IPFLETSAKQRVNVD 156 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccc--cccCHHHHHHHHHHhC-CEEEEeeCCCCCCHH
Confidence 9999999999999999988876533 227899999999998754 4555667777777776 789999999999999
Q ss_pred HHHHHHHHHHHhcCcc
Q 028647 167 EAFQCIAKNALKSGEE 182 (206)
Q Consensus 167 ~l~~~l~~~~~~~~~~ 182 (206)
++|++|++.+.+..++
T Consensus 157 ~~~~~l~~~l~~~~~~ 172 (189)
T PTZ00369 157 EAFYELVREIRKYLKE 172 (189)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999998765443
No 38
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=8.7e-33 Score=193.08 Aligned_cols=163 Identities=39% Similarity=0.658 Sum_probs=143.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
+.+||+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999988888888888877877888888888899999999999999989999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE 166 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (206)
|+|++++.+++.+..|+..+..... .++|+++|+||+|+.+. +....++...+++..+...++++|+++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 155 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGA----SNVVLLLIGNKCDLEEQ--REVLFEEACTLAEKNGMLAVLETSAKESQNVE 155 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cccCHHHHHHHHHHcCCcEEEEEECCCCCCHH
Confidence 9999999999999999998866432 27899999999999765 45667778888888775679999999999999
Q ss_pred HHHHHHHHH
Q 028647 167 EAFQCIAKN 175 (206)
Q Consensus 167 ~l~~~l~~~ 175 (206)
++++++.+.
T Consensus 156 ~~~~~l~~~ 164 (165)
T cd01864 156 EAFLLMATE 164 (165)
T ss_pred HHHHHHHHh
Confidence 999999875
No 39
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=7.6e-33 Score=192.54 Aligned_cols=160 Identities=33% Similarity=0.633 Sum_probs=143.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
++|+++|++|+|||||++++..+.+...+.++.+.++....+.+.+..+.+.+||++|++.+......+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999998888888888888888888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l 168 (206)
|++++++++.+..|+..+..... .+.|+++|+||.|+.+. +....++...+++.++ .+++++||++|.|++++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~----~~~~iilvgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~ 153 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAP----EGVQKILIGNKADEEQK--RQVGDEQGNKLAKEYG-MDFFETSACTNSNIKES 153 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHH
Confidence 99999999999999988865532 26899999999999765 5566788888888877 88999999999999999
Q ss_pred HHHHHHH
Q 028647 169 FQCIAKN 175 (206)
Q Consensus 169 ~~~l~~~ 175 (206)
|.+|.+.
T Consensus 154 f~~l~~~ 160 (161)
T cd04117 154 FTRLTEL 160 (161)
T ss_pred HHHHHhh
Confidence 9999864
No 40
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=1.2e-32 Score=192.29 Aligned_cols=163 Identities=39% Similarity=0.741 Sum_probs=145.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
..++|+++|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||+..+......+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 35899999999999999999999999888888898888888888888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE 166 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (206)
|+|++++.+++.+..|+..+...... +.|+++|+||.|+... +....++...++...+ .+++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~pi~vv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 154 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADS----NIVIMLVGNKSDLRHL--RAVPTEEAKAFAEKNG-LSFIETSALDGTNVE 154 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--ccCCHHHHHHHHHHcC-CEEEEEECCCCCCHH
Confidence 99999999999999999988766532 6899999999999765 5566777888887765 889999999999999
Q ss_pred HHHHHHHHHH
Q 028647 167 EAFQCIAKNA 176 (206)
Q Consensus 167 ~l~~~l~~~~ 176 (206)
+++++|++.+
T Consensus 155 ~l~~~l~~~i 164 (165)
T cd01868 155 EAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 41
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=1.1e-32 Score=192.96 Aligned_cols=166 Identities=36% Similarity=0.671 Sum_probs=146.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
++|+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||++|++.+......+++.+|++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888899888888888888898999999999999999988999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCC-CCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPS-DPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (206)
|++++.+++.+..|+..+....... ...+.|+++|+||+|+.+. +....++.+.++...+ .+++++||++|.|+++
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 157 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKH--RAVSEDEGRLWAESKG-FKYFETSACTGEGVNE 157 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccc--cccCHHHHHHHHHHcC-CeEEEEECCCCCCHHH
Confidence 9999999999999999887765421 1126899999999999753 4566777777887776 8899999999999999
Q ss_pred HHHHHHHHHH
Q 028647 168 AFQCIAKNAL 177 (206)
Q Consensus 168 l~~~l~~~~~ 177 (206)
++++|++.++
T Consensus 158 l~~~l~~~l~ 167 (168)
T cd04119 158 MFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 42
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.5e-32 Score=192.48 Aligned_cols=165 Identities=35% Similarity=0.629 Sum_probs=144.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (206)
+|+++|.+|||||||++++..+.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++++|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998999999888888888888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHH
Q 028647 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169 (206)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~ 169 (206)
++++++++.+..|+..++..... ...|+++|+||.|+.+........++...+...++ .+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~---~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDP---SSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ-AEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCC---CCCeEEEEEEChhcCccccccccHHHHHHHHHHcC-CeEEEEECCCCCCHHHHH
Confidence 99999999999999988655332 15689999999999765333345666777777776 789999999999999999
Q ss_pred HHHHHHHHh
Q 028647 170 QCIAKNALK 178 (206)
Q Consensus 170 ~~l~~~~~~ 178 (206)
+.|++.+.+
T Consensus 158 ~~l~~~~~~ 166 (170)
T cd04108 158 FRVAALTFE 166 (170)
T ss_pred HHHHHHHHH
Confidence 999998854
No 43
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=6.5e-33 Score=195.22 Aligned_cols=162 Identities=27% Similarity=0.487 Sum_probs=139.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
+||+++|.+|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 78999999999999999999999998888888876653 45677888899999999999999988888999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------cccccHHHHHHHHHhcCCCcEEEe
Q 028647 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVSEKKARAWCASKGNIPYFET 157 (206)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
|++++++++.+. .|+..+.... +++|+++|+||+|+.+.. .+.+..++++++++..+.+.++++
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~-----~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~ 155 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVEC 155 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEe
Confidence 999999999986 5877775543 278999999999986542 145677888888888876789999
Q ss_pred eccCCCCHHHHHHHHHHHH
Q 028647 158 SAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 158 S~~~~~~i~~l~~~l~~~~ 176 (206)
||++|.|++++|+.++..+
T Consensus 156 SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 156 SALTQKGLKNVFDEAILAA 174 (175)
T ss_pred cCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999865
No 44
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=3.1e-32 Score=197.02 Aligned_cols=169 Identities=38% Similarity=0.661 Sum_probs=149.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
++.++|+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45699999999999999999999999888888888888887778888888889999999999999888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|+|++++++++.+..|+..+..... .+.|+++|+||+|+.+. +....++.+++++..+ ++++++|++++.|+
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~----~~~piiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v 156 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHR--RAVSTEEGEQFAKEHG-LIFMEASAKTAQNV 156 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECccCccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 99999999999999899887765432 27899999999999765 5567788888888876 89999999999999
Q ss_pred HHHHHHHHHHHHhcCc
Q 028647 166 EEAFQCIAKNALKSGE 181 (206)
Q Consensus 166 ~~l~~~l~~~~~~~~~ 181 (206)
+++|+++++.+++...
T Consensus 157 ~e~f~~l~~~~~~~~~ 172 (210)
T PLN03108 157 EEAFIKTAAKIYKKIQ 172 (210)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999987543
No 45
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-33 Score=182.85 Aligned_cols=175 Identities=36% Similarity=0.624 Sum_probs=160.4
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
.-+..++|+++|..|+|||.|+++|..+-|++....+.+.++-.+++.+.+..++++||||+|+++|++....+++.+|+
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI 163 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (206)
+|+|+|++...+|+-+..|+.++...... ++--|+|+||+|+.+. +++..+..++|..... ..|+++||++-+
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~----kvlkilvgnk~d~~dr--revp~qigeefs~~qd-myfletsakea~ 155 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANN----KVLKILVGNKIDLADR--REVPQQIGEEFSEAQD-MYFLETSAKEAD 155 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhc----ceEEEeeccccchhhh--hhhhHHHHHHHHHhhh-hhhhhhcccchh
Confidence 99999999999999999999999988765 5667999999999876 7888888899988755 889999999999
Q ss_pred CHHHHHHHHHHHHHhcCccccc
Q 028647 164 NVEEAFQCIAKNALKSGEEEEI 185 (206)
Q Consensus 164 ~i~~l~~~l~~~~~~~~~~~~~ 185 (206)
|+++||..+.-.+.......+.
T Consensus 156 nve~lf~~~a~rli~~ar~~d~ 177 (213)
T KOG0095|consen 156 NVEKLFLDLACRLISEARQNDL 177 (213)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999888776665554
No 46
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.5e-32 Score=194.38 Aligned_cols=164 Identities=26% Similarity=0.494 Sum_probs=141.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
+||+++|.+|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998889999998888888889998899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC---cccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN---SRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
|++++++++.+..|+..+..... ...| ++|+||+|+.... ......++.+++++..+ ++++++||++|.|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~----~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~e~SAk~g~~v 154 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNK----TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-APLIFCSTSHSINV 154 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC----CCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 99999999999999998866432 1456 6789999996321 11223466777887777 88999999999999
Q ss_pred HHHHHHHHHHHHh
Q 028647 166 EEAFQCIAKNALK 178 (206)
Q Consensus 166 ~~l~~~l~~~~~~ 178 (206)
+++|+++++.++.
T Consensus 155 ~~lf~~l~~~l~~ 167 (182)
T cd04128 155 QKIFKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
No 47
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=2.5e-32 Score=197.64 Aligned_cols=171 Identities=20% Similarity=0.449 Sum_probs=145.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
++|+|+|.+|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+......+++++|++++||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999999889999876664 56778899999999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------cccccHHHHHHHHHhcCCCcEEEe
Q 028647 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVSEKKARAWCASKGNIPYFET 157 (206)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
|++++++++.+. .|...+.... ++.|+++|+||+|+..+. ...+..++.+.+++..+..+|++|
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-----~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~ 155 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-----PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVEC 155 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEc
Confidence 999999999985 5665554332 278999999999996531 123677889999999986699999
Q ss_pred eccCCCC-HHHHHHHHHHHHHhcCccccc
Q 028647 158 SAKEGIN-VEEAFQCIAKNALKSGEEEEI 185 (206)
Q Consensus 158 S~~~~~~-i~~l~~~l~~~~~~~~~~~~~ 185 (206)
||+++.+ ++++|+.+....+.+.+....
T Consensus 156 SAk~~~~~V~~~F~~~~~~~~~~~~~~~~ 184 (222)
T cd04173 156 SSRSSERSVRDVFHVATVASLGRGHRQLR 184 (222)
T ss_pred CCCcCCcCHHHHHHHHHHHHHhccCCccc
Confidence 9999985 999999999988876554333
No 48
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=4.4e-32 Score=196.59 Aligned_cols=171 Identities=35% Similarity=0.613 Sum_probs=142.1
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
..+..++|+|+|.+|+|||||+++|....+. .+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 4466799999999999999999999988764 567777777777778888888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHH-HHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647 84 CVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG 162 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 162 (206)
+++|||++++++++.+.. |...+..... ..+.|+++|+||+|+... +....++...+....+ ..++++||+++
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~---~~~~~~ilv~NK~Dl~~~--~~i~~~~~~~~~~~~~-~~~~e~SAk~~ 162 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYST---NQDCVKMLVGNKVDRESE--RDVSREEGMALAKEHG-CLFLECSAKTR 162 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccc--CccCHHHHHHHHHHcC-CEEEEEeCCCC
Confidence 999999999999999876 4444432221 126799999999999765 4455667777777766 78999999999
Q ss_pred CCHHHHHHHHHHHHHhcCc
Q 028647 163 INVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 163 ~~i~~l~~~l~~~~~~~~~ 181 (206)
.|++++|++|.+.+.....
T Consensus 163 ~~v~~l~~~l~~~~~~~~~ 181 (211)
T PLN03118 163 ENVEQCFEELALKIMEVPS 181 (211)
T ss_pred CCHHHHHHHHHHHHHhhhh
Confidence 9999999999999977654
No 49
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1.5e-32 Score=191.38 Aligned_cols=161 Identities=37% Similarity=0.648 Sum_probs=139.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
++|+++|.+|||||||++++..+.+...+.++.+ +.+...+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999888777777765 344566778888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l 168 (206)
|++++.+++.+..|...+...... .+.|+++|+||+|+.+. +....++...+...++ .+++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l 154 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDT---ENVPMVLVGNKCDLEDE--RVVSREEGQALARQWG-CPFYETSAKSKINVDEV 154 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--ceecHHHHHHHHHHcC-CeEEEecCCCCCCHHHH
Confidence 999999999999998888765332 37899999999999764 4556667777877777 89999999999999999
Q ss_pred HHHHHHHH
Q 028647 169 FQCIAKNA 176 (206)
Q Consensus 169 ~~~l~~~~ 176 (206)
|+++.+.+
T Consensus 155 ~~~l~~~~ 162 (163)
T cd04136 155 FADLVRQI 162 (163)
T ss_pred HHHHHHhc
Confidence 99998765
No 50
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.8e-32 Score=195.25 Aligned_cols=169 Identities=32% Similarity=0.546 Sum_probs=140.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC-CeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (206)
++|+|+|++|+|||||+++|..+.+...+.++.+.++.. .+... +..+.+.+|||+|++.+......+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 489999999999999999999999887777777666533 45554 6778999999999999998888899999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--cccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647 88 YDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN--SRVVSEKKARAWCASKGNIPYFETSAKEGIN 164 (206)
Q Consensus 88 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (206)
+|++++++++.+. .|+..+.... ++.|+++|+||.|+.... .+....++.++++..++..+++++||++|.|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-----PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMEN 154 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence 9999999999986 4776665432 278999999999996542 2345677888888888744899999999999
Q ss_pred HHHHHHHHHHHHHhcCccc
Q 028647 165 VEEAFQCIAKNALKSGEEE 183 (206)
Q Consensus 165 i~~l~~~l~~~~~~~~~~~ 183 (206)
++++|+.+++.++......
T Consensus 155 v~~~f~~l~~~~~~~~~~~ 173 (187)
T cd04132 155 VEEVFDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 9999999999998655444
No 51
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=3.8e-32 Score=190.34 Aligned_cols=165 Identities=39% Similarity=0.697 Sum_probs=146.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
..++|+|+|.+|+|||||++++.+..+...+.++.+.++....+..++....+.+||++|++++......+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999998888888888888877888888888899999999999999988999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE 166 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (206)
|+|++++++++.+..|+..+..... +++|+++|+||.|+.+. .....++...++...+ ..++++|++++.|++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~ 155 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHSN----SNMTIMLIGNKCDLESR--REVSYEEGEAFAKEHG-LIFMETSAKTASNVE 155 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence 9999999999999999988876542 27899999999999754 4566777888887776 889999999999999
Q ss_pred HHHHHHHHHHHh
Q 028647 167 EAFQCIAKNALK 178 (206)
Q Consensus 167 ~l~~~l~~~~~~ 178 (206)
++|.++.+.+++
T Consensus 156 ~~~~~~~~~~~~ 167 (168)
T cd01866 156 EAFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 52
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=2.2e-32 Score=198.80 Aligned_cols=165 Identities=29% Similarity=0.581 Sum_probs=144.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
...+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 66799999999999999999999999988888999988888878878888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|||++++++++.+..|+..+..... ++|+++|+||+|+... ....+++ .+....+ .+++++||++|.|+
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~-----~~piilvgNK~Dl~~~---~v~~~~~-~~~~~~~-~~~~e~SAk~~~~i 160 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKNR---QVKAKQV-TFHRKKN-LQYYEISAKSNYNF 160 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEEchhhhhc---cCCHHHH-HHHHhcC-CEEEEcCCCCCCCH
Confidence 99999999999999999998876542 7899999999999642 2333444 5555555 88999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 028647 166 EEAFQCIAKNALKSG 180 (206)
Q Consensus 166 ~~l~~~l~~~~~~~~ 180 (206)
+++|++|++.+.+..
T Consensus 161 ~~~f~~l~~~~~~~~ 175 (219)
T PLN03071 161 EKPFLYLARKLAGDP 175 (219)
T ss_pred HHHHHHHHHHHHcCc
Confidence 999999999997654
No 53
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=2.8e-32 Score=190.34 Aligned_cols=163 Identities=32% Similarity=0.589 Sum_probs=140.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (206)
+++|+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 37999999999999999999998888777777776555 45677888888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167 (206)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (206)
||.+++.+++.+..|+..+..... ..+.|+++|+||+|+.+. .....++...+++.++ ++++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~ 153 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKD---TEDVPMILVGNKCDLEDE--RVVGKEQGQNLARQWG-CAFLETSAKAKINVNE 153 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECCcchhc--cEEcHHHHHHHHHHhC-CEEEEeeCCCCCCHHH
Confidence 999999999999999888876532 227899999999999765 4455666777777776 8999999999999999
Q ss_pred HHHHHHHHHH
Q 028647 168 AFQCIAKNAL 177 (206)
Q Consensus 168 l~~~l~~~~~ 177 (206)
+|.++.+.+.
T Consensus 154 ~~~~l~~~l~ 163 (164)
T cd04175 154 IFYDLVRQIN 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998663
No 54
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=7.8e-32 Score=189.38 Aligned_cols=170 Identities=81% Similarity=1.276 Sum_probs=148.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
++|+++|++|||||||++++.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++++|++++++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888777888887887778888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l 168 (206)
|++++++++....|...+..........++|+++|+||+|+... .....++...+....+..+++++|+++|.|++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 158 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK--RQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQA 158 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc--cccCHHHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence 99999999999888888777766554557899999999999753 4455677777877776689999999999999999
Q ss_pred HHHHHHHHHhcC
Q 028647 169 FQCIAKNALKSG 180 (206)
Q Consensus 169 ~~~l~~~~~~~~ 180 (206)
++++.+.+.+..
T Consensus 159 ~~~i~~~~~~~~ 170 (172)
T cd01862 159 FETIARKALEQE 170 (172)
T ss_pred HHHHHHHHHhcc
Confidence 999999987753
No 55
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=5e-32 Score=188.63 Aligned_cols=159 Identities=37% Similarity=0.751 Sum_probs=139.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC--CeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE--DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
++|+++|.+|+|||||+++|..+.+...+.++.+.++....+.+. +..+.+.+||+||++.+...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999998888888888888776777676 777899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE 166 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (206)
|+|++++++++.+..|+..+..... ++|+++|+||.|+... .....++...+...++ .+++++|+++|.|++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 152 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECG-----DIPMVLVQTKIDLLDQ--AVITNEEAEALAKRLQ-LPLFRTSVKDDFNVT 152 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhcccc--cCCCHHHHHHHHHHcC-CeEEEEECCCCCCHH
Confidence 9999999999999999988765443 7899999999999765 4456677888888876 799999999999999
Q ss_pred HHHHHHHHH
Q 028647 167 EAFQCIAKN 175 (206)
Q Consensus 167 ~l~~~l~~~ 175 (206)
+++++|.+.
T Consensus 153 ~l~~~l~~~ 161 (162)
T cd04106 153 ELFEYLAEK 161 (162)
T ss_pred HHHHHHHHh
Confidence 999999753
No 56
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=7.4e-32 Score=187.61 Aligned_cols=161 Identities=34% Similarity=0.624 Sum_probs=137.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
++|+++|.+|+|||||++++....+.+.+.++.+.+.......+++..+.+.+||++|++.+...+..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999888777777776776777778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l 168 (206)
|++++.+++.+..|+..+..... +.|+++|+||+|+.+. ..++...+....+ ++++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-----~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l 149 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRP-----EIPCIVVANKIDLDPS-----VTQKKFNFAEKHN-LPLYYVSAADGTNVVKL 149 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEECccCchh-----HHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence 99999999999999988865432 6899999999998532 1234445555555 88999999999999999
Q ss_pred HHHHHHHHHhcC
Q 028647 169 FQCIAKNALKSG 180 (206)
Q Consensus 169 ~~~l~~~~~~~~ 180 (206)
|+.+++.+++++
T Consensus 150 ~~~l~~~~~~~~ 161 (161)
T cd04124 150 FQDAIKLAVSYK 161 (161)
T ss_pred HHHHHHHHHhcC
Confidence 999999887753
No 57
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=5.1e-32 Score=188.45 Aligned_cols=160 Identities=41% Similarity=0.678 Sum_probs=142.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888887788888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l 168 (206)
|+++++++..+..|+..+..... ++.|+++|+||.|+.+. .....++...+....+ ..++++|++++.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~ 153 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALAS----PNIVVILVGNKSDLADQ--REVTFLEASRFAQENG-LLFLETSALTGENVEEA 153 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEEchhcchh--ccCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHH
Confidence 99999999999999887765432 27899999999999764 5567788888888887 89999999999999999
Q ss_pred HHHHHHH
Q 028647 169 FQCIAKN 175 (206)
Q Consensus 169 ~~~l~~~ 175 (206)
|+++++.
T Consensus 154 ~~~~~~~ 160 (161)
T cd04113 154 FLKCARS 160 (161)
T ss_pred HHHHHHh
Confidence 9999875
No 58
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1e-31 Score=187.32 Aligned_cols=163 Identities=50% Similarity=0.869 Sum_probs=144.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
+||+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999888888888888888888888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l 168 (206)
|++++.+++.+..|+..+...... ++|+++|+||+|+... +....+...+++...+ ++++++|++++.|++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~----~~pivvv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~l 153 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADP----NVVIMLVGNKSDLEDQ--RQVSREEAEAFAEEHG-LPFFETSAKTNTNVEEA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEEchhcccc--cCCCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence 999999999999999888766532 7899999999998764 4556777788887776 88999999999999999
Q ss_pred HHHHHHHHHh
Q 028647 169 FQCIAKNALK 178 (206)
Q Consensus 169 ~~~l~~~~~~ 178 (206)
+++|.+.+.+
T Consensus 154 ~~~i~~~~~~ 163 (164)
T smart00175 154 FEELAREILK 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998865
No 59
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=6.2e-32 Score=188.19 Aligned_cols=161 Identities=45% Similarity=0.802 Sum_probs=150.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (206)
||+|+|++++|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||++|++.+......+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998889999999999999999999999999998888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHH
Q 028647 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169 (206)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~ 169 (206)
+++++|++.+..|+..+...... +.|+++++||.|+.+. +.+..+++++++..++ .+++++|++++.|+.++|
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~----~~~iivvg~K~D~~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f 153 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPE----DIPIIVVGNKSDLSDE--REVSVEEAQEFAKELG-VPYFEVSAKNGENVKEIF 153 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTT----TSEEEEEEETTTGGGG--SSSCHHHHHHHHHHTT-SEEEEEBTTTTTTHHHHH
T ss_pred ccccccccccccccccccccccc----cccceeeecccccccc--ccchhhHHHHHHHHhC-CEEEEEECCCCCCHHHHH
Confidence 99999999999999999888762 6899999999999874 6778889999999998 999999999999999999
Q ss_pred HHHHHHHH
Q 028647 170 QCIAKNAL 177 (206)
Q Consensus 170 ~~l~~~~~ 177 (206)
..+++.++
T Consensus 154 ~~~i~~i~ 161 (162)
T PF00071_consen 154 QELIRKIL 161 (162)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
No 60
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=6.2e-32 Score=190.04 Aligned_cols=161 Identities=26% Similarity=0.488 Sum_probs=137.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
++|+|+|.+|+|||||+.++..+.+...+.++.+. .+...+.+++..+.+.+|||+|++.+...+..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 79999999999999999999999888888888754 33456677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------cccccHHHHHHHHHhcCCCcEEEe
Q 028647 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVSEKKARAWCASKGNIPYFET 157 (206)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
|++++++++.+. .|+..+.... ++.|+++|+||+|+.+.. .+.+..+++++++..++..+++++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 155 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 155 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999985 5777665432 278999999999996532 134678888999998886699999
Q ss_pred eccCCCCHHHHHHHHHHH
Q 028647 158 SAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 158 S~~~~~~i~~l~~~l~~~ 175 (206)
||++|.|++++|+.+++.
T Consensus 156 Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 156 SALTQKGLKTVFDEAIRA 173 (174)
T ss_pred cccccCCHHHHHHHHHHh
Confidence 999999999999999864
No 61
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=5.9e-32 Score=193.48 Aligned_cols=175 Identities=25% Similarity=0.386 Sum_probs=141.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc--------chhhhhcc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYRG 80 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~ 80 (206)
++|+|+|.+|||||||+++|..+.+...+.++.+.+.+...+.+++..+.+.+|||||...+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999998888888887776666777888888999999999654321 12344688
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (206)
+|++++|||++++++++.+..|...+...... ...++|+++|+||+|+... +....++.+++.....+++++++||+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~-~~~~~piiivgNK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sak 157 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPA-GNKEPPIVVVGNKRDQQRH--RFAPRHVLSVLVRKSWKCGYLECSAK 157 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhccc-CCCCCCEEEEEECcccccc--ccccHHHHHHHHHHhcCCcEEEecCC
Confidence 99999999999999999999998888766421 1237899999999999764 44556666666554434899999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCcccccc
Q 028647 161 EGINVEEAFQCIAKNALKSGEEEEIY 186 (206)
Q Consensus 161 ~~~~i~~l~~~l~~~~~~~~~~~~~~ 186 (206)
+|.|++++|+.+++.++.+.+.....
T Consensus 158 ~g~~v~~lf~~i~~~~~~~~~~~~~~ 183 (198)
T cd04142 158 YNWHILLLFKELLISATTRGRSTHPA 183 (198)
T ss_pred CCCCHHHHHHHHHHHhhccCCCccHH
Confidence 99999999999999998877765443
No 62
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.2e-31 Score=187.35 Aligned_cols=160 Identities=32% Similarity=0.670 Sum_probs=137.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+......++..+|++|+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888778888887777777777888899999999999998888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l 168 (206)
|++++++++.+..|+..+..... ++|+++|+||+|+.+. ... .+..++.... ..+++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-----~~piiiv~nK~Dl~~~---~~~-~~~~~~~~~~-~~~~~e~Sa~~~~~v~~~ 150 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-----NIPIVLCGNKVDIKDR---KVK-AKQITFHRKK-NLQYYEISAKSNYNFEKP 150 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEEchhcccc---cCC-HHHHHHHHHc-CCEEEEEeCCCCCChHHH
Confidence 99999999999999998877654 7899999999999743 222 2334455444 488999999999999999
Q ss_pred HHHHHHHHHh
Q 028647 169 FQCIAKNALK 178 (206)
Q Consensus 169 ~~~l~~~~~~ 178 (206)
|++|.+.++.
T Consensus 151 f~~l~~~~~~ 160 (166)
T cd00877 151 FLWLARKLLG 160 (166)
T ss_pred HHHHHHHHHh
Confidence 9999999865
No 63
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1e-31 Score=187.49 Aligned_cols=162 Identities=35% Similarity=0.648 Sum_probs=138.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
++|+|+|++|||||||+++|.+..+...+.++.+..+ .....+++..+.+.+||+||++++...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999888877777765433 556667888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l 168 (206)
|++++++++.+..|...+....... +.|+++|+||+|+... +....++...+...++ .+++++||++|.|++++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~---~~pii~v~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l 153 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRD---DVPIVLVGNKCDLESE--RVVSTEEGKELARQWG-CPFLETSAKERVNVDEA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc--ceEcHHHHHHHHHHcC-CEEEEeecCCCCCHHHH
Confidence 9999999999999888776654322 6899999999999764 4556677777887776 89999999999999999
Q ss_pred HHHHHHHHH
Q 028647 169 FQCIAKNAL 177 (206)
Q Consensus 169 ~~~l~~~~~ 177 (206)
|++|++.+.
T Consensus 154 ~~~l~~~~~ 162 (164)
T smart00173 154 FYDLVREIR 162 (164)
T ss_pred HHHHHHHHh
Confidence 999998764
No 64
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.3e-31 Score=190.99 Aligned_cols=166 Identities=30% Similarity=0.487 Sum_probs=139.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
.+|+++|++|+|||||+++|..+.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 3799999999999999999999998887788876665 345667788889999999999999888888999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc----------cccHHHHHHHHHhcCCCcEEEe
Q 028647 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR----------VVSEKKARAWCASKGNIPYFET 157 (206)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
|++++++++.+. .|+..+..... +.|+++|+||+|+.+.... ....++...++...+.++++++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~-----~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 154 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCP-----GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLEC 154 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 999999999886 58877765432 7899999999999764211 2455667778777776789999
Q ss_pred eccCCCCHHHHHHHHHHHHHhcC
Q 028647 158 SAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 158 S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
||++|.|++++|++|++.++...
T Consensus 155 SAk~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 155 SAKLNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred cCCcCCCHHHHHHHHHHHHhccc
Confidence 99999999999999999987433
No 65
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1.9e-31 Score=185.52 Aligned_cols=160 Identities=35% Similarity=0.625 Sum_probs=137.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
++|+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|++++|+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 7899999999999999999999888877777776554 555677888888999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l 168 (206)
|++++.+++.+..|...+...... .+.|+++|+||+|+.+ +....++..++....+ .+++++||++|.|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~---~~~piivv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l 153 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDS---DDVPMVLVGNKCDLAA---RTVSSRQGQDLAKSYG-IPYIETSAKTRQGVEEA 153 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccccc---ceecHHHHHHHHHHhC-CeEEEecCCCCCCHHHH
Confidence 999999999998888888765432 2789999999999976 3455667777777776 78999999999999999
Q ss_pred HHHHHHHH
Q 028647 169 FQCIAKNA 176 (206)
Q Consensus 169 ~~~l~~~~ 176 (206)
|+++++.+
T Consensus 154 ~~~l~~~~ 161 (162)
T cd04138 154 FYTLVREI 161 (162)
T ss_pred HHHHHHHh
Confidence 99998754
No 66
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=2.3e-31 Score=185.65 Aligned_cols=162 Identities=32% Similarity=0.607 Sum_probs=138.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (206)
.+||+++|++|+|||||++++.++.+...+.++.+..+ .....+++..+.+.+||+||+.++...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 48999999999999999999999887767677666444 45566788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167 (206)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (206)
+|++++.+++.+..|...+...... .+.|+++|+||+|+... +....++..+++...+ .+++++||++|.|+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piiiv~NK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~ 154 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDR---DEFPMILVGNKADLEHQ--RKVSREEGQELARKLK-IPYIETSAKDRLNVDK 154 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC---CCCCEEEEeeCcccccc--ceecHHHHHHHHHHcC-CcEEEeeCCCCCCHHH
Confidence 9999999999999998888765332 27899999999999765 4456667778887776 7999999999999999
Q ss_pred HHHHHHHHH
Q 028647 168 AFQCIAKNA 176 (206)
Q Consensus 168 l~~~l~~~~ 176 (206)
+|++|++.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04145 155 AFHDLVRVI 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998764
No 67
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.5e-31 Score=186.49 Aligned_cols=161 Identities=33% Similarity=0.593 Sum_probs=137.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
++|+++|.+|+|||||++++..+.+...+.++.+ ......+.+++..+.+.+||++|++.+...+..+++++|++++|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 7999999999999999999999988877777664 445567778888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l 168 (206)
|++++++++.+..|...+...... .++|+++|+||+|+.+. .....++...+...++ .+++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~---~~~piviv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l 154 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGY---EKVPIILVGNKVDLESE--REVSSAEGRALAEEWG-CPFMETSAKSKTMVNEL 154 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccchhc--CccCHHHHHHHHHHhC-CEEEEecCCCCCCHHHH
Confidence 999999999999998888765322 27899999999998754 4455566677777776 78999999999999999
Q ss_pred HHHHHHHH
Q 028647 169 FQCIAKNA 176 (206)
Q Consensus 169 ~~~l~~~~ 176 (206)
|.++.+.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd04176 155 FAEIVRQM 162 (163)
T ss_pred HHHHHHhc
Confidence 99998754
No 68
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=2.7e-31 Score=186.36 Aligned_cols=163 Identities=38% Similarity=0.683 Sum_probs=142.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc-cchhhhhccCcEEEE
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-SLGVAFYRGADCCVL 86 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i~ 86 (206)
.++|+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|++.+. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4899999999999999999999998887888888888888888889988999999999998886 467788899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccC---CC
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE---GI 163 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~ 163 (206)
|||++++++++.+..|+..+...... .++|+++|+||+|+.+. +....++..+++.... .+++++||++ +.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~~~ 155 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLP---NEVPRILVGNKCDLREQ--IQVPTDLAQRFADAHS-MPLFETSAKDPSEND 155 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCC---CCCCEEEEEECccchhh--cCCCHHHHHHHHHHcC-CcEEEEeccCCcCCC
Confidence 99999999999999999888765432 27899999999998765 5566777888887776 8999999999 88
Q ss_pred CHHHHHHHHHHHH
Q 028647 164 NVEEAFQCIAKNA 176 (206)
Q Consensus 164 ~i~~l~~~l~~~~ 176 (206)
+++++|..+++.+
T Consensus 156 ~i~~~f~~l~~~~ 168 (170)
T cd04115 156 HVEAIFMTLAHKL 168 (170)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998865
No 69
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=2.3e-31 Score=185.07 Aligned_cols=160 Identities=41% Similarity=0.687 Sum_probs=141.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999988888888888888888888888889999999999999988999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l 168 (206)
|++++++++.+..|+..+...... +.|+++++||+|+.+. .....++...+....+ ++++++|++++.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l 153 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGN----DVIIVLVGNKTDLSDK--RQVSTEEGEKKAKELN-AMFIETSAKAGHNVKEL 153 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCC----CCEEEEEEEChhcccc--CccCHHHHHHHHHHhC-CEEEEEeCCCCCCHHHH
Confidence 999999999999998887654321 6899999999999644 5566777777777776 88999999999999999
Q ss_pred HHHHHHH
Q 028647 169 FQCIAKN 175 (206)
Q Consensus 169 ~~~l~~~ 175 (206)
+++|.+.
T Consensus 154 ~~~i~~~ 160 (161)
T cd01861 154 FRKIASA 160 (161)
T ss_pred HHHHHHh
Confidence 9999875
No 70
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=180.96 Aligned_cols=175 Identities=37% Similarity=0.661 Sum_probs=161.4
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
+...|+|+++|..=+|||||+-+++..+|...+.++.-..+..+.+.+.+....+.||||+|+++|..+-.-+++.++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 35679999999999999999999999999988888888888899999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN 164 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (206)
++|||+++.+||+.+..|..++...+.. .+-++||+||+||.+. +.++.++...++...+ +.++++||+++.|
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGn----ei~l~IVGNKiDLEee--R~Vt~qeAe~YAesvG-A~y~eTSAk~N~G 162 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGN----EIELLIVGNKIDLEEE--RQVTRQEAEAYAESVG-ALYMETSAKDNVG 162 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCC----eeEEEEecCcccHHHh--hhhhHHHHHHHHHhhc-hhheecccccccC
Confidence 9999999999999999999999888764 5779999999999877 8899999999999998 8899999999999
Q ss_pred HHHHHHHHHHHHHhcCcccccc
Q 028647 165 VEEAFQCIAKNALKSGEEEEIY 186 (206)
Q Consensus 165 i~~l~~~l~~~~~~~~~~~~~~ 186 (206)
|.++|+.|...+++...+.+..
T Consensus 163 i~elFe~Lt~~MiE~~s~~qr~ 184 (218)
T KOG0088|consen 163 ISELFESLTAKMIEHSSQRQRT 184 (218)
T ss_pred HHHHHHHHHHHHHHHhhhcccc
Confidence 9999999999998887655543
No 71
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=4.9e-31 Score=183.80 Aligned_cols=162 Identities=44% Similarity=0.761 Sum_probs=143.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (206)
.++|+|+|++|+|||||++++.++.+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999998877888888878788888999889999999999999988888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167 (206)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (206)
+|++++++++....|+..+..... ...|+++++||+|+... .....++...++...+ .+++++|+++|.|+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~ 153 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS----PNIIIALVGNKADLESK--RQVSTEEAQEYADENG-LLFFETSAKTGENVNE 153 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--CcCCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence 999999999999999888876543 27899999999998754 4456677778888777 8899999999999999
Q ss_pred HHHHHHHHH
Q 028647 168 AFQCIAKNA 176 (206)
Q Consensus 168 l~~~l~~~~ 176 (206)
++++|++.+
T Consensus 154 l~~~l~~~l 162 (163)
T cd01860 154 LFTEIAKKL 162 (163)
T ss_pred HHHHHHHHh
Confidence 999999876
No 72
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=4.9e-31 Score=184.20 Aligned_cols=162 Identities=30% Similarity=0.452 Sum_probs=134.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
++|+++|.+|+|||||++++.++.+...+.++.+..+ ......+...+.+.+||++|++.+......+++.+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7899999999999999999999988777777765444 445556777789999999999999888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l 168 (206)
|++++++++.+..|+..+...... ..+++|+++|+||+|+.+. +....++...++..++ .+++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGN-NIEKIPIMLVGNKCDESHK--REVSSNEGAACATEWN-CAFMETSAKTNHNVQEL 156 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcC-CCCCCCEEEEEECcccccc--CeecHHHHHHHHHHhC-CcEEEeecCCCCCHHHH
Confidence 999999999999888766654322 1237899999999999764 4455666777777766 78999999999999999
Q ss_pred HHHHHHH
Q 028647 169 FQCIAKN 175 (206)
Q Consensus 169 ~~~l~~~ 175 (206)
|++|++.
T Consensus 157 f~~l~~~ 163 (165)
T cd04140 157 FQELLNL 163 (165)
T ss_pred HHHHHhc
Confidence 9999753
No 73
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=8.7e-31 Score=192.93 Aligned_cols=166 Identities=30% Similarity=0.508 Sum_probs=139.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
++|+++|.+|+|||||+++|+.+.+...+.++.+ +.....+.+++..+.+.||||+|++.+......++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999988877777765 455667788888899999999999988888788889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCC-----CCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASP-----SDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI 163 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~-----~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (206)
|++++++|+.+..|+..+...... ....+.|+++|+||+|+... +.+..+++.++......+.++++||++|.
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~--~~v~~~ei~~~~~~~~~~~~~evSAktg~ 157 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP--REVQRDEVEQLVGGDENCAYFEVSAKKNS 157 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc--cccCHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence 999999999999998888754221 12237899999999999753 44667777777665445789999999999
Q ss_pred CHHHHHHHHHHHHH
Q 028647 164 NVEEAFQCIAKNAL 177 (206)
Q Consensus 164 ~i~~l~~~l~~~~~ 177 (206)
|++++|++|++.+.
T Consensus 158 gI~elf~~L~~~~~ 171 (247)
T cd04143 158 NLDEMFRALFSLAK 171 (247)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998763
No 74
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=6.3e-31 Score=184.18 Aligned_cols=164 Identities=25% Similarity=0.381 Sum_probs=137.9
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
++.++|+++|.+|+|||||+++|.++.+. ..+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999999988 78888888888777788888888899999999999988888889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN 164 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (206)
++|+|++++.+++.+..|+..+.. ..++|+++|+||+|+.+. .....++..++...++...++++||++|.|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~------~~~~p~iiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM------LGEIPCLFVAAKADLDEQ--QQRYEVQPDEFCRKLGLPPPLHFSSKLGDS 153 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc------CCCCeEEEEEEccccccc--ccccccCHHHHHHHcCCCCCEEEEeccCcc
Confidence 999999999999988787765421 126899999999999654 323334455666666633579999999999
Q ss_pred HHHHHHHHHHHHH
Q 028647 165 VEEAFQCIAKNAL 177 (206)
Q Consensus 165 i~~l~~~l~~~~~ 177 (206)
++++|+.+++.+.
T Consensus 154 v~~lf~~l~~~~~ 166 (169)
T cd01892 154 SNELFTKLATAAQ 166 (169)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999875
No 75
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=7.1e-31 Score=184.91 Aligned_cols=162 Identities=29% Similarity=0.555 Sum_probs=137.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEEC
Q 028647 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV 90 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (206)
|+|+|++|+|||||+++|..+.+...+.++....+ ...+.+++..+.+.+|||+|++.+......+++.+|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999998877777765544 45667788888999999999999998888899999999999999
Q ss_pred CChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------cccccHHHHHHHHHhcCCCcEEEeec
Q 028647 91 NSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVSEKKARAWCASKGNIPYFETSA 159 (206)
Q Consensus 91 ~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~S~ 159 (206)
+++++++.+. .|+..+..... +.|+++|+||+|+.... ...+..++..+++...+..+++++||
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 154 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCP-----NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSA 154 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecC
Confidence 9999999985 58877765432 78999999999997532 12366777888988888568999999
Q ss_pred cCCCCHHHHHHHHHHHHHh
Q 028647 160 KEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 160 ~~~~~i~~l~~~l~~~~~~ 178 (206)
++|.|++++|+.+++.+++
T Consensus 155 ~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 155 LTQEGVREVFEEAIRAALN 173 (174)
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 9999999999999998754
No 76
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=1.5e-30 Score=181.07 Aligned_cols=160 Identities=38% Similarity=0.695 Sum_probs=139.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
+||+++|++|+|||||+++|.+..+.....++.+.++....+.+.+..+.+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777888888887777778888889999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l 168 (206)
|++++.+++.+..|+..+...... .+.|+++|+||+|+.. .....++..++....+ .+++++|+++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~---~~~~~~iv~nK~D~~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~ 153 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTN---NDIVKMLVGNKIDKEN---REVTREEGLKFARKHN-MLFIETSAKTRDGVQQA 153 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCC---CCCcEEEEEECCcccc---cccCHHHHHHHHHHcC-CEEEEEecCCCCCHHHH
Confidence 999999999999998888766542 2789999999999974 3445667777877775 89999999999999999
Q ss_pred HHHHHHH
Q 028647 169 FQCIAKN 175 (206)
Q Consensus 169 ~~~l~~~ 175 (206)
++.+++.
T Consensus 154 ~~~~~~~ 160 (161)
T cd01863 154 FEELVEK 160 (161)
T ss_pred HHHHHHh
Confidence 9999875
No 77
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=1.6e-30 Score=182.20 Aligned_cols=163 Identities=35% Similarity=0.630 Sum_probs=140.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
++|+++|.+|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.++++++|+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 7899999999999999999999988777777776544 566778888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l 168 (206)
|.+++++++....|...+..... ..+.|+++++||.|+.+. +....++...+.+.++..+++++||+++.|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~ 155 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKD---SDNVPMVLVGNKADLEDD--RQVSREDGVSLSQQWGNVPFYETSARKRTNVDEV 155 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC---CCCCCEEEEEEChhcccc--CccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHH
Confidence 99999999999999888876432 227899999999999764 4556667777777776688999999999999999
Q ss_pred HHHHHHHHH
Q 028647 169 FQCIAKNAL 177 (206)
Q Consensus 169 ~~~l~~~~~ 177 (206)
|+++...++
T Consensus 156 f~~i~~~~~ 164 (168)
T cd04177 156 FIDLVRQII 164 (168)
T ss_pred HHHHHHHHh
Confidence 999998775
No 78
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=7.9e-31 Score=181.51 Aligned_cols=157 Identities=27% Similarity=0.488 Sum_probs=130.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
++|+++|++|+|||||++++..+.+...+.++ +..+ ...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 48999999999999999999988877655443 3333 46678888888999999999864 24567899999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l 168 (206)
|.+++++|+.+..|+..+...... .+.|+++|+||.|+.....+.+..++.+++++....+.|++|||++|.|++++
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~---~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~ 150 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNI---SEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERV 150 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHH
Confidence 999999999999999988765421 27899999999998654446777888888888765589999999999999999
Q ss_pred HHHHHHH
Q 028647 169 FQCIAKN 175 (206)
Q Consensus 169 ~~~l~~~ 175 (206)
|..+++.
T Consensus 151 f~~~~~~ 157 (158)
T cd04103 151 FQEAAQK 157 (158)
T ss_pred HHHHHhh
Confidence 9999864
No 79
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=1.3e-30 Score=186.35 Aligned_cols=156 Identities=29% Similarity=0.622 Sum_probs=136.9
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCCh
Q 028647 14 LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSM 93 (206)
Q Consensus 14 iG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (206)
+|.+|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888888888888888888888888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHH
Q 028647 94 KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173 (206)
Q Consensus 94 ~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~ 173 (206)
.+++.+..|+..+..... ++|+++|+||+|+... ....+. ..++...+ +.+++|||++|.|++++|++|+
T Consensus 81 ~S~~~i~~w~~~i~~~~~-----~~piilvgNK~Dl~~~---~v~~~~-~~~~~~~~-~~~~e~SAk~~~~v~~~F~~l~ 150 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDVKDR---KVKAKS-ITFHRKKN-LQYYDISAKSNYNFEKPFLWLA 150 (200)
T ss_pred HHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccccc---cCCHHH-HHHHHHcC-CEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999998877542 7899999999998642 233333 35666655 8899999999999999999999
Q ss_pred HHHHhc
Q 028647 174 KNALKS 179 (206)
Q Consensus 174 ~~~~~~ 179 (206)
+.+...
T Consensus 151 ~~i~~~ 156 (200)
T smart00176 151 RKLIGD 156 (200)
T ss_pred HHHHhc
Confidence 999775
No 80
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=2.3e-30 Score=180.10 Aligned_cols=161 Identities=43% Similarity=0.734 Sum_probs=138.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
+||+++|++|+|||||+++|.+..+.....++.+.......+...+..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998887766667766676677777777788999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l 168 (206)
|++++++++.+..|+..+...... ++|+++|+||+|+... .....++..++....+ .+++++|++++.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~s~~~~~gi~~~ 153 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGN----NISLVIVGNKIDLERQ--RVVSKSEAEEYAKSVG-AKHFETSAKTGKGIEEL 153 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHH
Confidence 999999999999998888766543 6899999999999854 4455666777777666 88999999999999999
Q ss_pred HHHHHHHH
Q 028647 169 FQCIAKNA 176 (206)
Q Consensus 169 ~~~l~~~~ 176 (206)
++++.+.+
T Consensus 154 ~~~l~~~~ 161 (162)
T cd04123 154 FLSLAKRM 161 (162)
T ss_pred HHHHHHHh
Confidence 99998875
No 81
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.98 E-value=2e-30 Score=180.89 Aligned_cols=160 Identities=32% Similarity=0.622 Sum_probs=134.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCccceeEEEEEEEeC-CeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
++|+++|++|||||||+++|... .+...+.++.+.++....+.++ +..+.+.+||+||+..+...+..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 48999999999999999999865 5667788888877766666664 56689999999999999888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|+|++++++++.+..|+..+.... .+.|+++|+||+|+.+. .....++.+.+...++ .+++++|++++.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 152 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-----KHMPGVLVGNKMDLADK--AEVTDAQAQAFAQANQ-LKFFKTSALRGVGY 152 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccc--cCCCHHHHHHHHHHcC-CeEEEEeCCCCCCh
Confidence 9999999999999999988876553 26899999999999765 3445555566666665 78999999999999
Q ss_pred HHHHHHHHHHH
Q 028647 166 EEAFQCIAKNA 176 (206)
Q Consensus 166 ~~l~~~l~~~~ 176 (206)
+++|+.+.+.+
T Consensus 153 ~~l~~~l~~~~ 163 (164)
T cd04101 153 EEPFESLARAF 163 (164)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 82
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.98 E-value=2.6e-30 Score=181.87 Aligned_cols=160 Identities=30% Similarity=0.502 Sum_probs=135.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
+||+++|++|+|||||++++..+.+...+.++. .+.....+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999988887777765 3444556778888889999999999999998888999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------cccccHHHHHHHHHhcCCCcEEEe
Q 028647 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVSEKKARAWCASKGNIPYFET 157 (206)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
|++++++++.+. .|+..+..... +.|+++|+||+|+.... .+.+..+++..++...+...++++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~ 154 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNP-----KAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIEC 154 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEE
Confidence 999999999874 57776654322 68999999999986532 356677888899988875589999
Q ss_pred eccCCCCHHHHHHHHHH
Q 028647 158 SAKEGINVEEAFQCIAK 174 (206)
Q Consensus 158 S~~~~~~i~~l~~~l~~ 174 (206)
||++|.|++++|+.++-
T Consensus 155 Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 155 SALTQKNLKEVFDTAIL 171 (173)
T ss_pred eCCCCCCHHHHHHHHHh
Confidence 99999999999998864
No 83
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=7.2e-30 Score=178.94 Aligned_cols=164 Identities=39% Similarity=0.653 Sum_probs=140.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
...++|+++|++|+|||||++++..+.+...+.++.+.+.....+.+.+..+.+.+||+||+..+......+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999988887777888877777778888888889999999999989988889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+. +....+..+.+..... .+++++|+++|.|+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~----~~~~i~v~NK~D~~~~--~~i~~~~~~~~~~~~~-~~~~~~Sa~~~~gv 157 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANN----KVITILVGNKIDLAER--REVSQQRAEEFSDAQD-MYYLETSAKESDNV 157 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--cccCHHHHHHHHHHcC-CeEEEeeCCCCCCH
Confidence 999999999999888888877554332 6899999999998754 4455556666666665 88999999999999
Q ss_pred HHHHHHHHHHH
Q 028647 166 EEAFQCIAKNA 176 (206)
Q Consensus 166 ~~l~~~l~~~~ 176 (206)
+++|++|.+.+
T Consensus 158 ~~l~~~i~~~~ 168 (169)
T cd04114 158 EKLFLDLACRL 168 (169)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 84
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=7.3e-30 Score=185.79 Aligned_cols=166 Identities=27% Similarity=0.400 Sum_probs=136.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhc-cCcEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR-GADCCVL 86 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~d~~i~ 86 (206)
++|+++|++|+|||||+++|..+.+. ..+.++.+.+.....+.+++....+.+||++|++.+ ....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence 58999999999999999999888776 555666554666777888888899999999998832 2334556 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE 166 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (206)
|||++++.+++.+..|+..+..... ..++|+++|+||+|+.+. +.+..++...++..++ ++++++||+++.|++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~---~~~~piilV~NK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~SA~~~~gv~ 152 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQ---LEDRPIILVGNKSDLARS--REVSVQEGRACAVVFD-CKFIETSAGLQHNVD 152 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEChhcccc--ceecHHHHHHHHHHcC-CeEEEecCCCCCCHH
Confidence 9999999999999999888766432 127899999999999765 5566777777877776 789999999999999
Q ss_pred HHHHHHHHHHHhcCcc
Q 028647 167 EAFQCIAKNALKSGEE 182 (206)
Q Consensus 167 ~l~~~l~~~~~~~~~~ 182 (206)
++|+++++.+..+...
T Consensus 153 ~l~~~l~~~~~~~~~~ 168 (221)
T cd04148 153 ELLEGIVRQIRLRRDS 168 (221)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 9999999998754443
No 85
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=5.7e-30 Score=180.31 Aligned_cols=162 Identities=27% Similarity=0.465 Sum_probs=135.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
+||+++|++|+|||||+++|..+.+...+.++.... ....+.+++..+.+.+||++|++.+......+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 589999999999999999999998877776665433 3446778888888999999999999888888999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------ccccHHHHHHHHHhcCCCcEEEe
Q 028647 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------RVVSEKKARAWCASKGNIPYFET 157 (206)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
|.+++.+++.+. .|...+... . ++.|+++|+||+|+.+... +....++++.+++.++..+++++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~----~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 154 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-A----PNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVEC 154 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-C----CCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 999999999885 566665433 1 2789999999999865421 24567788888888886689999
Q ss_pred eccCCCCHHHHHHHHHHHH
Q 028647 158 SAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 158 S~~~~~~i~~l~~~l~~~~ 176 (206)
||++|.|++++|+.+++.+
T Consensus 155 Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 155 SALTQKGLKTVFDEAILAI 173 (174)
T ss_pred cCCcCCCHHHHHHHHHHHh
Confidence 9999999999999999876
No 86
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=9.2e-30 Score=176.18 Aligned_cols=159 Identities=48% Similarity=0.874 Sum_probs=140.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
++|+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l 168 (206)
|++++++++.+..|+..+...... ..|+++++||+|+... .....++..++....+ .+++++|++++.|++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~----~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~ 153 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPE----NIPIILVGNKIDLEDQ--RQVSTEEAQQFAKENG-LLFFETSAKTGENVEEL 153 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEEccccccc--ccccHHHHHHHHHHcC-CeEEEEecCCCCCHHHH
Confidence 999999999999998888776532 6899999999999733 4556778888888765 89999999999999999
Q ss_pred HHHHHH
Q 028647 169 FQCIAK 174 (206)
Q Consensus 169 ~~~l~~ 174 (206)
+++|.+
T Consensus 154 ~~~i~~ 159 (159)
T cd00154 154 FQSLAE 159 (159)
T ss_pred HHHHhC
Confidence 999863
No 87
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=7.9e-30 Score=178.11 Aligned_cols=162 Identities=28% Similarity=0.469 Sum_probs=133.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh-hccchhhhhccCcEEEEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~~i~v~ 88 (206)
+|+|+|++|+|||||+++++.+.+...+.++....+ ...+.+++..+.+.+||+||+.. .......+++.+|++++|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 589999999999999999998887766666664443 55667888888999999999885 3445677889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC-CHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI-NVEE 167 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~i~~ 167 (206)
|++++++++.+..|+..+..... ...++|+++|+||+|+.+. +....++...++...+ .+++++|+++|. |+++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~~v~~ 154 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKK--RDREIPVILVGNKADLLHY--RQVSTEEGEKLASELG-CLFFEVSAAEDYDGVHS 154 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECCchHHh--CccCHHHHHHHHHHcC-CEEEEeCCCCCchhHHH
Confidence 99999999999998887765432 1227899999999998754 4556677888888887 889999999994 9999
Q ss_pred HHHHHHHHHH
Q 028647 168 AFQCIAKNAL 177 (206)
Q Consensus 168 l~~~l~~~~~ 177 (206)
+|+.+.+.+.
T Consensus 155 ~f~~l~~~~~ 164 (165)
T cd04146 155 VFHELCREVR 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 88
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=2.7e-29 Score=175.09 Aligned_cols=162 Identities=35% Similarity=0.586 Sum_probs=137.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
+||+++|++|+|||||+++++...+...+.++.+..+ ......++..+.+.+||+||+..+......+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999888777777765444 455667888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l 168 (206)
|++++.+++....|...+...... .++|+++|+||+|+... .....++...+...++ .+++++|+++|.|++++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~---~~~piiiv~NK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l 153 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDD---DNVPLLLVGNKCDLEDK--RQVSSEEAANLARQWG-VPYVETSAKTRQNVEKA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEEccccccc--cccCHHHHHHHHHHhC-CeEEEeeCCCCCCHHHH
Confidence 999999999999998888876442 27899999999999763 3345566666777766 78999999999999999
Q ss_pred HHHHHHHHH
Q 028647 169 FQCIAKNAL 177 (206)
Q Consensus 169 ~~~l~~~~~ 177 (206)
|+.+.+.+.
T Consensus 154 ~~~l~~~~~ 162 (164)
T cd04139 154 FYDLVREIR 162 (164)
T ss_pred HHHHHHHHH
Confidence 999998774
No 89
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.3e-29 Score=180.73 Aligned_cols=160 Identities=26% Similarity=0.428 Sum_probs=127.2
Q ss_pred eEEEEEEcCCCCCHHHHHH-HHhcCC-----CCCCCCCccce-eEEEEE--------EEeCCeEEEEEEEeCCChhhhcc
Q 028647 8 LLKVIILGDSGVGKTSLMN-QYVNKK-----FSNQYKATIGA-DFLTKE--------VQFEDRLFTLQIWDTAGQERFQS 72 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~ 72 (206)
.+||+++|.+|+|||||+. ++.++. +...+.|+.+. +.+... ..+++..+.+.+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 3799999999999999995 565443 34556677642 222221 256788899999999998753
Q ss_pred chhhhhccCcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------------Cc
Q 028647 73 LGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG-----------------NS 134 (206)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------------~~ 134 (206)
....+++++|++++|||++++.|++.+. .|+..+..... +.|+++|+||+|+... ..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-----~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-----RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNA 154 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhccccccchhhhcccccccccccC
Confidence 3456789999999999999999999996 58887765432 7899999999998642 13
Q ss_pred ccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHH
Q 028647 135 RVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 175 (206)
+.+..++++++++.++ ++|++|||++|.|++++|+.+++.
T Consensus 155 ~~V~~~e~~~~a~~~~-~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 155 DILPPETGRAVAKELG-IPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CccCHHHHHHHHHHhC-CEEEEcCCCCCCCHHHHHHHHHHh
Confidence 6778899999999988 799999999999999999999864
No 90
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=2.3e-29 Score=177.36 Aligned_cols=162 Identities=28% Similarity=0.540 Sum_probs=134.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
.||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+.......+.++|++++|+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999988877777776554 345677888889999999999988888878889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------ccccHHHHHHHHHhcCCCcEEEe
Q 028647 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------RVVSEKKARAWCASKGNIPYFET 157 (206)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
|++++++++.+. .|...+..... +.|+++|+||.|+.+... .....++.++++...+..+++++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 155 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMEC 155 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEe
Confidence 999999998885 47666654322 789999999999865321 23445677778877776689999
Q ss_pred eccCCCCHHHHHHHHHHHH
Q 028647 158 SAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 158 S~~~~~~i~~l~~~l~~~~ 176 (206)
||++|.|++++|++|.+.+
T Consensus 156 Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 156 SAKTKEGVREVFEMATRAA 174 (175)
T ss_pred ccccCcCHHHHHHHHHHHh
Confidence 9999999999999999765
No 91
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.7e-32 Score=176.91 Aligned_cols=175 Identities=44% Similarity=0.668 Sum_probs=156.1
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEe---------CCeEEEEEEEeCCChhhhccchh
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF---------EDRLFTLQIWDTAGQERFQSLGV 75 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~D~~g~~~~~~~~~ 75 (206)
-++.++.+.+|.+|+||||++.+++.++|.....++.+.++..+.+-+ .+..+.+++|||+|+++|+++..
T Consensus 6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT 85 (219)
T KOG0081|consen 6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT 85 (219)
T ss_pred HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH
Confidence 356678899999999999999999999999999999998887777654 33567899999999999999999
Q ss_pred hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEE
Q 028647 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYF 155 (206)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (206)
.+++.+-+++++||+++..||-++..|+.++..+.--. +..+++++||+||.+. ++++.+++..++.+++ +|++
T Consensus 86 AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE---~PDivlcGNK~DL~~~--R~Vs~~qa~~La~kyg-lPYf 159 (219)
T KOG0081|consen 86 AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCE---NPDIVLCGNKADLEDQ--RVVSEDQAAALADKYG-LPYF 159 (219)
T ss_pred HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccC---CCCEEEEcCccchhhh--hhhhHHHHHHHHHHhC-CCee
Confidence 99999999999999999999999999999998776533 5569999999999987 8999999999999998 9999
Q ss_pred EeeccCCCCHHHHHHHHHHHHHhcCccccc
Q 028647 156 ETSAKEGINVEEAFQCIAKNALKSGEEEEI 185 (206)
Q Consensus 156 ~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~ 185 (206)
++||-+|.|+++..+.++..+.++.++-..
T Consensus 160 ETSA~tg~Nv~kave~LldlvM~Rie~~v~ 189 (219)
T KOG0081|consen 160 ETSACTGTNVEKAVELLLDLVMKRIEQCVE 189 (219)
T ss_pred eeccccCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999887765443
No 92
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-29 Score=163.90 Aligned_cols=194 Identities=33% Similarity=0.618 Sum_probs=168.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
.+.++-.++|.-|+|||.|++.|..++|...-..+.+..+-.+.+.+.+..+++++||++|+++|+...+.+++.+.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 56799999999999999999999999998888888899999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|+|++.+.+...+..|+..-..... ++..+++++||.|+..+ +.+..++.++|+...+ .-|+++|+++|+|+
T Consensus 89 mvyditrrstynhlsswl~dar~ltn----pnt~i~lignkadle~q--rdv~yeeak~faeeng-l~fle~saktg~nv 161 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDARNLTN----PNTVIFLIGNKADLESQ--RDVTYEEAKEFAEENG-LMFLEASAKTGQNV 161 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhhccCC----CceEEEEecchhhhhhc--ccCcHHHHHHHHhhcC-eEEEEecccccCcH
Confidence 99999999999999999887755443 37789999999999887 8899999999999987 88999999999999
Q ss_pred HHHHHHHHHHHHhcCccccccCCcc-------------cccCCCCCCCCCCccC
Q 028647 166 EEAFQCIAKNALKSGEEEEIYLPDT-------------IDVGNSSQPRSSGCEC 206 (206)
Q Consensus 166 ~~l~~~l~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~gc~~ 206 (206)
++.|-...+.++.....+..++.+. -.+......++-||.|
T Consensus 162 edafle~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c~c 215 (215)
T KOG0097|consen 162 EDAFLETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQCSC 215 (215)
T ss_pred HHHHHHHHHHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccCCC
Confidence 9999999998888776665554332 2233344666777887
No 93
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=5.2e-29 Score=177.30 Aligned_cols=169 Identities=28% Similarity=0.515 Sum_probs=138.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
.+|+|+|++|+|||||+++|..+.+...+.++....+ ...+.+++..+.+.+||++|++.+.......+..+|++++++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998887766666655444 345667787788999999999888777667788999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--------cccccHHHHHHHHHhcCCCcEEEeec
Q 028647 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN--------SRVVSEKKARAWCASKGNIPYFETSA 159 (206)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~S~ 159 (206)
|+++.++++.+. .|+..+..... ++|+++|+||+|+.+.. .+....++...+++.++..+++++||
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~-----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 155 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCP-----NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSA 155 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccC
Confidence 999999999986 58887765432 68999999999986421 23455677888888887668999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCccc
Q 028647 160 KEGINVEEAFQCIAKNALKSGEEE 183 (206)
Q Consensus 160 ~~~~~i~~l~~~l~~~~~~~~~~~ 183 (206)
++|.|++++|+++.+.++.-++.+
T Consensus 156 ~~~~~v~~~f~~l~~~~~~~~~~~ 179 (187)
T cd04129 156 LTGEGVDDVFEAATRAALLVRKSE 179 (187)
T ss_pred CCCCCHHHHHHHHHHHHhcccCcc
Confidence 999999999999999886655544
No 94
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=7.1e-29 Score=172.20 Aligned_cols=159 Identities=36% Similarity=0.672 Sum_probs=137.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (206)
||+++|++|||||||++++++..+...+.++.. +.....+...+..+.+.+||+||+..+......+++.+|++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887777777766 4556667777777899999999999988888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHH
Q 028647 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169 (206)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~ 169 (206)
++++++++....|...+...... .+.|+++|+||+|+... +....+++..+...++ .+++++|++++.|+++++
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~l~ 153 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDD---EDIPIVLVGNKCDLENE--RQVSKEEGKALAKEWG-CPFIETSAKDNINIDEVF 153 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECCccccc--ceecHHHHHHHHHHcC-CcEEEeccCCCCCHHHHH
Confidence 99999999998888887766542 27899999999999864 5566778888888776 899999999999999999
Q ss_pred HHHHHH
Q 028647 170 QCIAKN 175 (206)
Q Consensus 170 ~~l~~~ 175 (206)
++|.+.
T Consensus 154 ~~l~~~ 159 (160)
T cd00876 154 KLLVRE 159 (160)
T ss_pred HHHHhh
Confidence 999875
No 95
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=1.3e-28 Score=176.76 Aligned_cols=170 Identities=31% Similarity=0.446 Sum_probs=135.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (206)
||+++|.+|+|||||+++|....+...+.++.. +.....+.+.+..+.+.+||++|+..+......++..+|++++|+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999888776666654 3445567778877899999999999888888888999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHH
Q 028647 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAF 169 (206)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~ 169 (206)
++++.+++.+..|+..+...... .++|+++|+||+|+.+.. .....++..+......+.+++++|+++|.|++++|
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~NK~Dl~~~~-~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 155 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKED---KFVPIVVVGNKADSLEEE-RQVPAKDALSTVELDWNCGFVETSAKDNENVLEVF 155 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEEcccccccc-ccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHH
Confidence 99999999999998888765542 278999999999987631 33334344433332223789999999999999999
Q ss_pred HHHHHHHHhcCcccc
Q 028647 170 QCIAKNALKSGEEEE 184 (206)
Q Consensus 170 ~~l~~~~~~~~~~~~ 184 (206)
++|++.+.......+
T Consensus 156 ~~l~~~~~~~~~~~~ 170 (198)
T cd04147 156 KELLRQANLPYNLSP 170 (198)
T ss_pred HHHHHHhhcccccch
Confidence 999998865444333
No 96
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=6.6e-29 Score=176.15 Aligned_cols=167 Identities=22% Similarity=0.300 Sum_probs=129.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEe-CCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
.++|+++|++|||||||++++....+... .++.+.+.....+.. ++..+.+.+||++|++.+...+..+++++|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 48999999999999999999998776643 566555554444443 3356789999999999998889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH--hc---CCCcEEEeeccC
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA--SK---GNIPYFETSAKE 161 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~S~~~ 161 (206)
|+|++++.+++....|+..+...... .++|+++|+||+|+.+. ...+++..+.. .. ..++++++||++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~---~~~p~iiv~NK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 154 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSEN---QGVPVLVLANKQDLPNA----LSVSEVEKLLALHELSASTPWHVQPACAII 154 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhc---CCCcEEEEEECcCcccc----CCHHHHHHHhCccccCCCCceEEEEeeccc
Confidence 99999998888888887777654322 27899999999998653 22333444332 11 124689999999
Q ss_pred CCCHHHHHHHHHHHHHhcCcc
Q 028647 162 GINVEEAFQCIAKNALKSGEE 182 (206)
Q Consensus 162 ~~~i~~l~~~l~~~~~~~~~~ 182 (206)
|.|+++++++|.+.+.+..+.
T Consensus 155 ~~gi~~l~~~l~~~l~~~~~~ 175 (183)
T cd04152 155 GEGLQEGLEKLYEMILKRRKM 175 (183)
T ss_pred CCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999998765543
No 97
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=2.4e-28 Score=172.93 Aligned_cols=165 Identities=34% Similarity=0.532 Sum_probs=137.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
.+|+++|.+|+|||||+++|....+...+.++.+... ...+...+..+.+.+||+||+.++...+..++..+|++++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998887766666654443 455667777788999999999999888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEA 168 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l 168 (206)
|.++..+++.+..|+..+...... .+.|+++|+||+|+... +....++...+...++ .+++++|++++.|+.++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l 154 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGK---ESVPIVLVGNKSDLHTQ--RQVSTEEGKELAESWG-AAFLESSARENENVEEA 154 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEEchhhhhc--CccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence 999999999999988887765432 26899999999998754 4445556667777766 78999999999999999
Q ss_pred HHHHHHHHHhcC
Q 028647 169 FQCIAKNALKSG 180 (206)
Q Consensus 169 ~~~l~~~~~~~~ 180 (206)
++++.+.+....
T Consensus 155 ~~~l~~~~~~~~ 166 (180)
T cd04137 155 FELLIEEIEKVE 166 (180)
T ss_pred HHHHHHHHHHhc
Confidence 999999886554
No 98
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=5.6e-31 Score=168.55 Aligned_cols=162 Identities=41% Similarity=0.668 Sum_probs=148.4
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECC
Q 028647 13 ILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN 91 (206)
Q Consensus 13 viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 91 (206)
++|.+++|||.|+-++-.+.|. ....++.+.++..+.+..++..+++++|||+|+++|++....+++.+|++++++|+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6899999999998888777665 456888999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHH
Q 028647 92 SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQC 171 (206)
Q Consensus 92 ~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~ 171 (206)
+..||++.+.|+.++.....+ .+.+.+++||+|+.+. +.+..++.++++..++ +||+++|+++|.|++..|-.
T Consensus 82 nkasfdn~~~wlsei~ey~k~----~v~l~llgnk~d~a~e--r~v~~ddg~kla~~y~-ipfmetsaktg~nvd~af~~ 154 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKE----AVALMLLGNKCDLAHE--RAVKRDDGEKLAEAYG-IPFMETSAKTGFNVDLAFLA 154 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHh----hHhHhhhccccccchh--hccccchHHHHHHHHC-CCceeccccccccHhHHHHH
Confidence 999999999999999888766 6788999999999876 7788899999999998 99999999999999999999
Q ss_pred HHHHHHhcCc
Q 028647 172 IAKNALKSGE 181 (206)
Q Consensus 172 l~~~~~~~~~ 181 (206)
|.+.+.+..-
T Consensus 155 ia~~l~k~~~ 164 (192)
T KOG0083|consen 155 IAEELKKLKM 164 (192)
T ss_pred HHHHHHHhcc
Confidence 9998876543
No 99
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=3.6e-29 Score=176.24 Aligned_cols=158 Identities=18% Similarity=0.291 Sum_probs=121.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
..++|+++|.+|||||||++++..+.+. .+.++.+.++. .+... .+.+.+||+||++.+...+..+++++|++++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 4699999999999999999999877664 45666665543 23333 4789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----cCCCcEEEeeccCC
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----KGNIPYFETSAKEG 162 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~~ 162 (206)
|+|++++++++....++..+.... ..++.|++||+||.|+.+.. ..+++.+.... ...+.++++||++|
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~---~~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 159 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNED---ELRDAVILVFANKQDLPDAM----KAAEITEKLGLHSIRDRNWYIQPTCATSG 159 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCH---hhcCCcEEEEEeCcCcccCC----CHHHHHHHhCccccCCCcEEEEEeeCCCC
Confidence 999999999998888877765431 11268999999999997542 12222222211 11245778999999
Q ss_pred CCHHHHHHHHHHHH
Q 028647 163 INVEEAFQCIAKNA 176 (206)
Q Consensus 163 ~~i~~l~~~l~~~~ 176 (206)
.|++++|++|.+.+
T Consensus 160 ~gv~e~~~~l~~~~ 173 (175)
T smart00177 160 DGLYEGLTWLSNNL 173 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998775
No 100
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=4.9e-29 Score=176.29 Aligned_cols=162 Identities=16% Similarity=0.293 Sum_probs=123.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
+..++|+++|.+|||||||++++..+.+. .+.++.+.+.. .+... .+.+++||+||++.+...+..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34589999999999999999999877665 45666665443 33343 478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC----CCcEEEeeccC
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG----NIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~S~~~ 161 (206)
+|+|++++++++....++..+... ....+.|++||+||+|+.+.. ..+++.+...-.. .+.++++||++
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~---~~~~~~piilv~NK~Dl~~~~----~~~~~~~~l~l~~~~~~~~~~~~~Sa~~ 162 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcC---HhhCCCCEEEEEECCCCCCCC----CHHHHHHHhCccccCCCceEEEeccCCC
Confidence 999999999988877766655432 122378999999999997642 2333333322111 13466899999
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 028647 162 GINVEEAFQCIAKNALKS 179 (206)
Q Consensus 162 ~~~i~~l~~~l~~~~~~~ 179 (206)
|+|++++|++|.+.+.++
T Consensus 163 g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 163 GEGLYEGLDWLSNNIANK 180 (181)
T ss_pred CCCHHHHHHHHHHHHhhc
Confidence 999999999999887653
No 101
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=2.3e-29 Score=176.03 Aligned_cols=156 Identities=17% Similarity=0.299 Sum_probs=121.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
+.++|+++|.+|+|||||+++|..+.+. .+.++.+.++. .+.. ..+.+.+||++|++.+...+..+++++|++++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999876654 34566665543 2333 34789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh---c-CCCcEEEeeccCC
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS---K-GNIPYFETSAKEG 162 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~S~~~~ 162 (206)
|+|++++.+++....++..+..... ..+.|+++|+||+|+.+. ...++++++... . ..+.++++||++|
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g 155 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDRE---MRDALLLVFANKQDLPDA----MKPHEIQEKLGLTRIRDRNWYVQPSCATSG 155 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHh---hcCCcEEEEEECcCCccC----CCHHHHHHHcCCCccCCCcEEEEEeeCCCC
Confidence 9999999999888877766654321 126899999999998653 234555554421 1 1246899999999
Q ss_pred CCHHHHHHHHHH
Q 028647 163 INVEEAFQCIAK 174 (206)
Q Consensus 163 ~~i~~l~~~l~~ 174 (206)
.|++++|++|.+
T Consensus 156 ~gv~~~~~~l~~ 167 (168)
T cd04149 156 DGLYEGLTWLSS 167 (168)
T ss_pred CChHHHHHHHhc
Confidence 999999999865
No 102
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=1.3e-28 Score=172.62 Aligned_cols=160 Identities=21% Similarity=0.377 Sum_probs=125.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (206)
+|+++|.+|||||||+++|....+. .+.++.+..+. .+.++ .+.+.+||+||+..+...+..+++.+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 5899999999999999999988654 35666554443 33343 4788999999999998889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC-----CCcEEEeeccCCCC
Q 028647 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG-----NIPYFETSAKEGIN 164 (206)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~ 164 (206)
++++.+++....|+..+..... ..+.|+++|+||+|+.+. ...++++++....+ .+.++++||++|.|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 148 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKE---LRDALLLIFANKQDVAGA----LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMG 148 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChh---hCCCCEEEEEeCcCcccC----CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCC
Confidence 9999999999888887764322 125799999999998643 34555555543221 13688999999999
Q ss_pred HHHHHHHHHHHHHhcCc
Q 028647 165 VEEAFQCIAKNALKSGE 181 (206)
Q Consensus 165 i~~l~~~l~~~~~~~~~ 181 (206)
++++|++|.+.+....+
T Consensus 149 v~~~f~~l~~~~~~~~~ 165 (169)
T cd04158 149 LYEGLDWLSRQLVAAGV 165 (169)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 99999999988766443
No 103
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.8e-28 Score=171.42 Aligned_cols=163 Identities=25% Similarity=0.357 Sum_probs=124.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
+||+++|.+|+|||||+++|.++.+...+..+ .... .....+.+..+.+.+||+||...+...+..++..+|++++|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 48999999999999999999998886553332 2222 344456667789999999999888777777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCC-CcEEEeeccCCCCHH
Q 028647 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGN-IPYFETSAKEGINVE 166 (206)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~ 166 (206)
|++++++++.+. .|...+..... +.|+++|+||+|+.+........+++..+...++. .+++++||++|.|++
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-----~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 153 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-----KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVS 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHH
Confidence 999999999875 56666654332 78999999999997653221123334444444443 379999999999999
Q ss_pred HHHHHHHHHHHh
Q 028647 167 EAFQCIAKNALK 178 (206)
Q Consensus 167 ~l~~~l~~~~~~ 178 (206)
++|+.+.+.++.
T Consensus 154 ~lf~~~~~~~~~ 165 (166)
T cd01893 154 EVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHHHhcC
Confidence 999999988764
No 104
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=3.7e-28 Score=170.53 Aligned_cols=160 Identities=29% Similarity=0.551 Sum_probs=130.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
+||+++|++|+|||||+++|++..+...+.++... .........+..+.+.+||+||++.+.......++.+|++++|+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFD-NYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 58999999999999999999999886666666543 33555667788889999999999988888888889999999999
Q ss_pred ECCChhhHHHHHH-HHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc---------cccHHHHHHHHHhcCCCcEEEee
Q 028647 89 DVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR---------VVSEKKARAWCASKGNIPYFETS 158 (206)
Q Consensus 89 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~S 158 (206)
|+++++++..... |+..+..... +.|+++|+||+|+.+.... ....++..++...++..+++++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 154 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-----NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECS 154 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEee
Confidence 9999998887654 5555544332 7899999999999876432 33567778888888755999999
Q ss_pred ccCCCCHHHHHHHHHH
Q 028647 159 AKEGINVEEAFQCIAK 174 (206)
Q Consensus 159 ~~~~~~i~~l~~~l~~ 174 (206)
+++|.|+++++++|++
T Consensus 155 a~~~~gi~~l~~~i~~ 170 (171)
T cd00157 155 ALTQEGVKEVFEEAIR 170 (171)
T ss_pred cCCCCCHHHHHHHHhh
Confidence 9999999999999875
No 105
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=7.4e-29 Score=172.06 Aligned_cols=155 Identities=17% Similarity=0.317 Sum_probs=117.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
+||+++|.+|||||||++++..+.+. .+.++.+.+.. .+... .+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999877765 45666665543 23333 478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH-h--cCCCcEEEeeccCCCCH
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA-S--KGNIPYFETSAKEGINV 165 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~S~~~~~~i 165 (206)
|++++.+++....++..+.... ...+.|+++++||+|+.+.. ...+....+.. . ...+.++++||++|.|+
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv 149 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNED---ELRDAVLLVFANKQDLPNAM---SAAEVTDKLGLHSLRNRNWYIQATCATSGDGL 149 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcH---HhcCCCEEEEEECCCCCCCC---CHHHHHHHhCccccCCCCEEEEEeeCCCCCCH
Confidence 9999999998888777665321 11268999999999996531 11222222211 1 11245789999999999
Q ss_pred HHHHHHHHH
Q 028647 166 EEAFQCIAK 174 (206)
Q Consensus 166 ~~l~~~l~~ 174 (206)
+++|++|.+
T Consensus 150 ~~~~~~l~~ 158 (159)
T cd04150 150 YEGLDWLSN 158 (159)
T ss_pred HHHHHHHhc
Confidence 999999864
No 106
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=3.9e-29 Score=174.32 Aligned_cols=155 Identities=18% Similarity=0.262 Sum_probs=122.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (206)
+|+++|++|+|||||+++|.+..+...+.++.+... ..++...+.+.+||++|++.+...+..+++++|++++|+|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999999887777777776543 2234445789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccc--cHHHHHHHHHhcCCCcEEEeeccC------
Q 028647 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV--SEKKARAWCASKGNIPYFETSAKE------ 161 (206)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~S~~~------ 161 (206)
.+++.+++....|+..+.... .++|+++|+||+|+........ ...++..+++..+ +.++++||++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-----~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~Sa~~~~s~~~ 150 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-----PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRR-WILQGTSLDDDGSPSR 150 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-----CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCc-eEEEEeeecCCCChhH
Confidence 999999988888877775432 2889999999999976521110 0112344444444 7889999998
Q ss_pred CCCHHHHHHHHHH
Q 028647 162 GINVEEAFQCIAK 174 (206)
Q Consensus 162 ~~~i~~l~~~l~~ 174 (206)
++|++++|+.++.
T Consensus 151 ~~~v~~~~~~~~~ 163 (164)
T cd04162 151 MEAVKDLLSQLIN 163 (164)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998864
No 107
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=2.5e-28 Score=173.28 Aligned_cols=165 Identities=35% Similarity=0.566 Sum_probs=150.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
..++|+++|.+|+|||+|+.+|..+.|...+.++.+ +.+.+.+.+++....+.|+||+|++++..+...++.++|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 358999999999999999999999999999999987 5558888899999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE 166 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (206)
||+++++.||+.+..+...+....... .+|+++|+||+|+... +.+..++++.++..+. ++|+++||+.+.+++
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~---~~PivlVGNK~Dl~~~--R~V~~eeg~~la~~~~-~~f~E~Sak~~~~v~ 154 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRD---DVPIILVGNKCDLERE--RQVSEEEGKALARSWG-CAFIETSAKLNYNVD 154 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcC---CCCEEEEEEcccchhc--cccCHHHHHHHHHhcC-CcEEEeeccCCcCHH
Confidence 999999999999999999885544332 6899999999999887 8899999999999998 779999999999999
Q ss_pred HHHHHHHHHHHh
Q 028647 167 EAFQCIAKNALK 178 (206)
Q Consensus 167 ~l~~~l~~~~~~ 178 (206)
++|..|++.+-.
T Consensus 155 ~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 155 EVFYELVREIRL 166 (196)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 108
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=1.5e-28 Score=173.99 Aligned_cols=161 Identities=19% Similarity=0.301 Sum_probs=121.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
+.++|+++|++|||||||++++..+.+.. +.++.+.++. .+... .+.+.+||++|++.+...+..+++++|++|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999998776653 5566665443 33343 4789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh--c--CCCcEEEeeccCC
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS--K--GNIPYFETSAKEG 162 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~S~~~~ 162 (206)
|+|++++++++....++..+... ....+.|+++|+||.|+.+.. ..+++...... . ..+.++++||++|
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~---~~~~~~piilv~NK~Dl~~~~----~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg 163 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSE---DELRDAVLLVFANKQDLPNAM----STTEVTEKLGLHSVRQRNWYIQGCCATTA 163 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhC---HhhcCCCEEEEEeCCCCCCCC----CHHHHHHHhCCCcccCCcEEEEeeeCCCC
Confidence 99999999988887766665432 112268999999999986532 12222222111 0 1135678999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q 028647 163 INVEEAFQCIAKNALKS 179 (206)
Q Consensus 163 ~~i~~l~~~l~~~~~~~ 179 (206)
.|++++|++|.+.+.+.
T Consensus 164 ~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 164 QGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999887654
No 109
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=2e-28 Score=172.34 Aligned_cols=158 Identities=21% Similarity=0.384 Sum_probs=122.6
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
+...++|+++|++|||||||+++|.+..+ ....++.+. ....+.+++ +.+.+||+||++.+...+..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF--QIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 35568999999999999999999998754 344555553 333444553 6789999999998888888999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----cCCCcEEEeecc
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----KGNIPYFETSAK 160 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~ 160 (206)
++|+|++++.+++....|+..+..... ..+.|+++|+||+|+.+.. ..+++.++... ...++++++||+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEER---LAGATLLILANKQDLPGAL----SEEEIREALELDKISSHHWRIQPCSAV 158 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChh---hcCCCEEEEEECcccccCC----CHHHHHHHhCccccCCCceEEEeccCC
Confidence 999999999999888888777654221 2378999999999997642 34445544432 124689999999
Q ss_pred CCCCHHHHHHHHHH
Q 028647 161 EGINVEEAFQCIAK 174 (206)
Q Consensus 161 ~~~~i~~l~~~l~~ 174 (206)
+|.|++++|+++++
T Consensus 159 ~g~gi~~l~~~l~~ 172 (173)
T cd04154 159 TGEGLLQGIDWLVD 172 (173)
T ss_pred CCcCHHHHHHHHhc
Confidence 99999999999864
No 110
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=2.9e-27 Score=171.85 Aligned_cols=168 Identities=29% Similarity=0.593 Sum_probs=142.4
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
.....++|+++|++|||||||++++..+.+...+.++.+.++....+..+++.+.+.+||++|+..+......++..+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 34567999999999999999999999888888888998888888777788888999999999999888888888999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI 163 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (206)
+++|+|+++..++..+..|+..+..... ++|+++++||+|+.+. ....+. ..+....+ ..++++|+++|.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~i~lv~nK~Dl~~~---~~~~~~-~~~~~~~~-~~~~e~Sa~~~~ 154 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVCE-----NIPIVLVGNKVDVKDR---QVKARQ-ITFHRKKN-LQYYDISAKSNY 154 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECccCccc---cCCHHH-HHHHHHcC-CEEEEEeCCCCC
Confidence 9999999999999999999888876542 7899999999998643 222232 34555555 789999999999
Q ss_pred CHHHHHHHHHHHHHhcCc
Q 028647 164 NVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 164 ~i~~l~~~l~~~~~~~~~ 181 (206)
|+++.|.+|++.+....+
T Consensus 155 ~v~~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 155 NFEKPFLWLARRLTNDPN 172 (215)
T ss_pred CHHHHHHHHHHHHhhccc
Confidence 999999999999877544
No 111
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=3.8e-28 Score=169.00 Aligned_cols=156 Identities=18% Similarity=0.294 Sum_probs=116.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
+|+++|++|||||||+++|.+..+ ...+.++.+.... .+.. ..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 4455666654332 2222 3477899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH----hcCCCcEEEeeccCCCC
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA----SKGNIPYFETSAKEGIN 164 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~S~~~~~~ 164 (206)
|++++.++.....|+..+..... ....++|+++|+||+|+.+... .++...... ....+.++++||++|.|
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~NK~Dl~~~~~----~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~g 151 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPD-IKHRRVPILFFANKMDLPDALT----AVKITQLLGLENIKDKPWHIFASNALTGEG 151 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcc-cccCCCCEEEEEeCccccCCCC----HHHHHHHhCCccccCceEEEEEeeCCCCCc
Confidence 99999988888888777654321 1123789999999999976421 222222211 11124689999999999
Q ss_pred HHHHHHHHHH
Q 028647 165 VEEAFQCIAK 174 (206)
Q Consensus 165 i~~l~~~l~~ 174 (206)
++++|++|.+
T Consensus 152 v~~~~~~l~~ 161 (162)
T cd04157 152 LDEGVQWLQA 161 (162)
T ss_pred hHHHHHHHhc
Confidence 9999999865
No 112
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=1.2e-27 Score=168.39 Aligned_cols=155 Identities=23% Similarity=0.347 Sum_probs=118.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
..++|+++|++|+|||||++++..+.+.. ..++.+.++. .+.++ .+.+.+||+||++.+...+..+++.+|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 35899999999999999999999877664 4566555443 33344 3678999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHH-HHHH----HhcCCCcEEEeeccC
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKA-RAWC----ASKGNIPYFETSAKE 161 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~S~~~ 161 (206)
|+|+++++++.....++..+..... ..++|+++++||+|+.+.. ..++. ..+. ... .++++++||++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~---~~~~p~viv~NK~Dl~~~~----~~~~i~~~l~~~~~~~~-~~~~~~~SA~~ 160 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHED---LRKAVLLVLANKQDLKGAM----TPAEISESLGLTSIRDH-TWHIQGCCALT 160 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchh---hcCCCEEEEEECCCCCCCC----CHHHHHHHhCcccccCC-ceEEEecccCC
Confidence 9999999888877776666644321 2368999999999987531 22222 2221 122 25789999999
Q ss_pred CCCHHHHHHHHHH
Q 028647 162 GINVEEAFQCIAK 174 (206)
Q Consensus 162 ~~~i~~l~~~l~~ 174 (206)
|+|+++++++|.+
T Consensus 161 g~gi~e~~~~l~~ 173 (174)
T cd04153 161 GEGLPEGLDWIAS 173 (174)
T ss_pred CCCHHHHHHHHhc
Confidence 9999999999864
No 113
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=1.5e-27 Score=165.68 Aligned_cols=154 Identities=23% Similarity=0.372 Sum_probs=115.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (206)
+|+++|++|+|||||+++|..+.+.. ..++.+.++ ..+.. +..+.+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999887753 345554433 23333 234789999999999888888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH--hc---CCCcEEEeeccCCCC
Q 028647 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA--SK---GNIPYFETSAKEGIN 164 (206)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~S~~~~~~ 164 (206)
++++.++.....++..++.... ..+.|+++|+||+|+.... ..+++..... .+ ..++++++||++|.|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~g 149 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEH---IKGVPVVLLANKQDLPGAL----TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEG 149 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchh---hcCCCEEEEEECcccccCc----CHHHHHHHcCCcccCCCCcEEEEecccccCCC
Confidence 9999888888887777654321 1278999999999986531 1222222211 11 225789999999999
Q ss_pred HHHHHHHHHH
Q 028647 165 VEEAFQCIAK 174 (206)
Q Consensus 165 i~~l~~~l~~ 174 (206)
++++|++|.+
T Consensus 150 v~~~~~~i~~ 159 (160)
T cd04156 150 LAEAFRKLAS 159 (160)
T ss_pred hHHHHHHHhc
Confidence 9999999864
No 114
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=1.9e-27 Score=166.34 Aligned_cols=157 Identities=19% Similarity=0.289 Sum_probs=119.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (206)
+|+++|++|||||||+++|.+. +...+.++.+.. ...+...+ +.+.+||+||+..+...+..+++++|++++|+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 555667776654 33444444 778999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHH--HHHHHHHhcC-CCcEEEeeccCC----
Q 028647 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK--KARAWCASKG-NIPYFETSAKEG---- 162 (206)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~S~~~~---- 162 (206)
++++.+++.+..|+..+..... ..+.|+++|+||+|+.+........+ .+.+++...+ .+.++++||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~---~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~ 152 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPR---VSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKK 152 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCcc---ccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCc
Confidence 9999999999888888765422 22789999999999976532111111 1122332222 257888999998
Q ss_pred --CCHHHHHHHHHH
Q 028647 163 --INVEEAFQCIAK 174 (206)
Q Consensus 163 --~~i~~l~~~l~~ 174 (206)
.|+++.|+||..
T Consensus 153 ~~~g~~~~~~wl~~ 166 (167)
T cd04161 153 IDPSIVEGLRWLLA 166 (167)
T ss_pred cccCHHHHHHHHhc
Confidence 899999999975
No 115
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=3.5e-27 Score=163.57 Aligned_cols=153 Identities=20% Similarity=0.367 Sum_probs=118.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (206)
||+++|.+|||||||++++.+..+ ....++.+... ..+.+.+ ..+.+||+||+..+...+..+++.+|++++|+|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998873 34444544433 3344443 678999999999998899999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----cCCCcEEEeeccCCCCH
Q 028647 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----KGNIPYFETSAKEGINV 165 (206)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~~~~i 165 (206)
+++++++.....++..+..... ..+.|+++|+||+|+.... ..++..+.... ...++++++|+++|.|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 148 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEE---LKGVPLLIFANKQDLPGAL----SVSELIEKLGLEKILGRRWHIQPCSAVTGDGL 148 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcc---cCCCcEEEEeeccCCcccc----CHHHHHHhhChhhccCCcEEEEEeeCCCCCCH
Confidence 9999999988888877766443 2378999999999987642 22333333221 12368999999999999
Q ss_pred HHHHHHHHH
Q 028647 166 EEAFQCIAK 174 (206)
Q Consensus 166 ~~l~~~l~~ 174 (206)
+++|++|..
T Consensus 149 ~~~~~~l~~ 157 (158)
T cd00878 149 DEGLDWLLQ 157 (158)
T ss_pred HHHHHHHhh
Confidence 999999875
No 116
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=2.5e-27 Score=164.31 Aligned_cols=153 Identities=22% Similarity=0.353 Sum_probs=112.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (206)
||+++|++++|||||++++..+.+.. ..++.+.+.. .+.+. ...+++||+||+..+...+..++..+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998776643 3455444432 33333 3678999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc----CCCcEEEeeccCCCCH
Q 028647 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK----GNIPYFETSAKEGINV 165 (206)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~S~~~~~~i 165 (206)
++++.++.....++..+.... ...+.|+++|+||+|+.+.. ..+++....... ...+++++||++|.|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi 148 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEE---ELKGAVLLVFANKQDMPGAL----SEAEISEKLGLSELKDRTWSIFKTSAIKGEGL 148 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhch---hhcCCcEEEEEeCCCCCCCC----CHHHHHHHhCccccCCCcEEEEEeeccCCCCH
Confidence 999887776655555443321 12278999999999987542 122222211110 1246999999999999
Q ss_pred HHHHHHHHH
Q 028647 166 EEAFQCIAK 174 (206)
Q Consensus 166 ~~l~~~l~~ 174 (206)
++++++|.+
T Consensus 149 ~~l~~~l~~ 157 (158)
T cd04151 149 DEGMDWLVN 157 (158)
T ss_pred HHHHHHHhc
Confidence 999999975
No 117
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.95 E-value=1.5e-27 Score=165.88 Aligned_cols=169 Identities=28% Similarity=0.520 Sum_probs=151.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC-CeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
..+++.|+|..++|||+|+-.+..+.|+..+.|+...++ ...+.++ ++.+.+.+|||+|+++|+.+....+.++|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 468999999999999999999999999999999997544 6667784 99999999999999999998878899999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------cccccHHHHHHHHHhcCCCcE
Q 028647 86 LVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVSEKKARAWCASKGNIPY 154 (206)
Q Consensus 86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~ 154 (206)
+||++.+++|++++ .+|+.++...+. ++|+|+|++|.||..+. ...+..++++.++++.+...+
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp-----~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y 156 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCP-----NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKY 156 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCC-----CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCccee
Confidence 99999999999995 689999988874 89999999999998432 135778899999999999999
Q ss_pred EEeeccCCCCHHHHHHHHHHHHHhcCc
Q 028647 155 FETSAKEGINVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 155 ~~~S~~~~~~i~~l~~~l~~~~~~~~~ 181 (206)
++|||.+..|++++|+..+.+++...+
T Consensus 157 ~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 157 LECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred eeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 999999999999999999999988655
No 118
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=3.6e-27 Score=164.94 Aligned_cols=154 Identities=24% Similarity=0.394 Sum_probs=115.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC------CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKF------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
+|+++|++|+|||||+++|..... ...+.++.+... ..+.+++ ..+.+||+||+..+...+..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999976432 122334443333 3444544 678999999999999989999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc------CCCcEEEe
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK------GNIPYFET 157 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 157 (206)
+++|+|+++++++.....++..+..... ..+.|+++++||+|+.+.. ..++...+.... ..++++++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~NK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEA---LEGVPLLILANKQDLPDAL----SVEEIKEVFQDKAEEIGRRDCLVLPV 149 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChh---hcCCCEEEEEEccccccCC----CHHHHHHHhccccccccCCceEEEEe
Confidence 9999999998888888777777654322 2278999999999987642 233334333221 23689999
Q ss_pred eccCCCCHHHHHHHHHH
Q 028647 158 SAKEGINVEEAFQCIAK 174 (206)
Q Consensus 158 S~~~~~~i~~l~~~l~~ 174 (206)
||++|.|+++++++|.+
T Consensus 150 Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 150 SALEGTGVREGIEWLVE 166 (167)
T ss_pred eCCCCcCHHHHHHHHhc
Confidence 99999999999999864
No 119
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.95 E-value=1.9e-26 Score=164.80 Aligned_cols=152 Identities=25% Similarity=0.430 Sum_probs=123.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC-----CeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-----DRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
+||+++|.+|+|||||+++|..+.+...+.++.+.++..+.+.+. +..+.+.+||++|++.+......+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888888877777776664 467899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCC---------------CCCCCCcEEEEEeCCCCCCCCcccccHH----HHHH
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASP---------------SDPDNFPFVVLGNKIDVDGGNSRVVSEK----KARA 144 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~~ 144 (206)
+|+|||++++.|++.+..|+.++...... ....++|+++|+||.|+.+. +....+ ....
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~--r~~~~~~~~~~~~~ 158 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE--KESSGNLVLTARGF 158 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh--cccchHHHhhHhhh
Confidence 99999999999999999999998764311 11237899999999999764 222222 3445
Q ss_pred HHHhcCCCcEEEeeccCCC
Q 028647 145 WCASKGNIPYFETSAKEGI 163 (206)
Q Consensus 145 ~~~~~~~~~~~~~S~~~~~ 163 (206)
++.+.+ ++.+..++.++.
T Consensus 159 ia~~~~-~~~i~~~c~~~~ 176 (202)
T cd04102 159 VAEQGN-AEEINLNCTNGR 176 (202)
T ss_pred HHHhcC-CceEEEecCCcc
Confidence 566666 888888888644
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=1.6e-26 Score=165.00 Aligned_cols=158 Identities=25% Similarity=0.398 Sum_probs=122.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
.+.++|+++|++|||||||++++.+..+. .+.++.+.. ...+.+++ ..+.+||+||+..+...+..+++.+|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999987764 344444432 33445554 57889999999988888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc---------------C
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK---------------G 150 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------------~ 150 (206)
+|+|+++.++++....++..+..... ..+.|+++++||+|+... ...++++.+.... .
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~---~~~~pvivv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEE---LANVPFLILGNKIDLPGA----VSEEELRQALGLYGTTTGKGVSLKVSGIR 164 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCcc---ccCCCEEEEEeCCCCCCC----cCHHHHHHHhCcccccccccccccccCce
Confidence 99999999888887777777664322 226899999999998653 3445555555421 1
Q ss_pred CCcEEEeeccCCCCHHHHHHHHHHH
Q 028647 151 NIPYFETSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 151 ~~~~~~~S~~~~~~i~~l~~~l~~~ 175 (206)
...++++||++|+|++++|++|.+.
T Consensus 165 ~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 165 PIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred eEEEEEeEecCCCChHHHHHHHHhh
Confidence 2468999999999999999999875
No 121
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=7.9e-27 Score=164.09 Aligned_cols=160 Identities=29% Similarity=0.524 Sum_probs=125.2
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
.++.++|+++|+.||||||+++++..+... ...||.+ +....+.+.+ +.+.+||.+|+..+...|..++.++|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g--~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIG--FNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESS--EEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccc--cccceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence 367899999999999999999999876433 2444444 4445556666 6789999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH--hc---CCCcEEEeec
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA--SK---GNIPYFETSA 159 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~S~ 159 (206)
|||+|.++.+.+......+..++.... ..++|++|++||.|+.+.. ..+++..... .+ ..+.++.+|+
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~---~~~~piLIl~NK~D~~~~~----~~~~i~~~l~l~~l~~~~~~~v~~~sa 158 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPE---LKDIPILILANKQDLPDAM----SEEEIKEYLGLEKLKNKRPWSVFSCSA 158 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGG---GTTSEEEEEEESTTSTTSS----THHHHHHHTTGGGTTSSSCEEEEEEBT
T ss_pred EEEEecccceeecccccchhhhcchhh---cccceEEEEeccccccCcc----hhhHHHhhhhhhhcccCCceEEEeeec
Confidence 999999999888888877777765432 2278999999999988753 2333333322 11 2367899999
Q ss_pred cCCCCHHHHHHHHHHHH
Q 028647 160 KEGINVEEAFQCIAKNA 176 (206)
Q Consensus 160 ~~~~~i~~l~~~l~~~~ 176 (206)
.+|+|+.+.++||.+.+
T Consensus 159 ~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 159 KTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp TTTBTHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHhcC
Confidence 99999999999999864
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=1.8e-26 Score=163.72 Aligned_cols=158 Identities=21% Similarity=0.335 Sum_probs=119.9
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
++.++|+++|.+|+|||||++++.+..+. .+.++.+.. ...+.+.+ +++.+||+||+..+...+..+++++|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45699999999999999999999987654 233443332 23334444 67899999999988889999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh-----------cCCCcE
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS-----------KGNIPY 154 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 154 (206)
+|+|+++++++.....++..+..... ..+.|+++|+||+|+... ...+++.+...- .+...+
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~---~~~~piliv~NK~Dl~~~----~~~~~i~~~l~l~~~~~~~~~~~~~~~~i 162 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEE---LATVPFLILGNKIDAPYA----ASEDELRYALGLTNTTGSKGKVGVRPLEV 162 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChh---hcCCCEEEEEeCccccCC----CCHHHHHHHcCCCcccccccccCCceeEE
Confidence 99999999888888777776654321 127899999999998653 234444433311 123569
Q ss_pred EEeeccCCCCHHHHHHHHHHH
Q 028647 155 FETSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 155 ~~~S~~~~~~i~~l~~~l~~~ 175 (206)
+++||+++.|++++++||.++
T Consensus 163 ~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 163 FMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEeecccCCChHHHHHHHHhh
Confidence 999999999999999999865
No 123
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.95 E-value=5.8e-26 Score=150.41 Aligned_cols=166 Identities=21% Similarity=0.375 Sum_probs=128.4
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
+++.++|+++|..||||||++++|.+.. .....|+.+. ...+..+++ +++.+||.+|+...++.|.+++...|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf--~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGF--QIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccce--eeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 4568999999999999999999999876 3344555554 444444444 7899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccccc--HHHHHHHHHhcCCCcEEEeeccCC
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVS--EKKARAWCASKGNIPYFETSAKEG 162 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~S~~~~ 162 (206)
|+|+|.+++..++.....+..++..-. .-+.|++|++||.|+..+-..... .-.+.++....+ ++++.||+.+|
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eer---laG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~-~~l~~cs~~tg 163 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEER---LAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH-WRLVKCSAVTG 163 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhh---hcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccC-ceEEEEecccc
Confidence 999999999888887776666655322 237899999999999854221111 112333334444 99999999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q 028647 163 INVEEAFQCIAKNALKS 179 (206)
Q Consensus 163 ~~i~~l~~~l~~~~~~~ 179 (206)
+++.+-++|+.+.+.++
T Consensus 164 e~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 164 EDLLEGIDWLCDDLMSR 180 (185)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 99999999999988763
No 124
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.95 E-value=3.2e-26 Score=158.42 Aligned_cols=154 Identities=27% Similarity=0.454 Sum_probs=119.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (206)
.|+++|++|+|||||+++|.+..+...+.++.+.+... +...+ +.+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 37999999999999999999998888877777765543 33333 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH----hcCCCcEEEeeccCCCCH
Q 028647 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA----SKGNIPYFETSAKEGINV 165 (206)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~S~~~~~~i 165 (206)
++++.++.....++..+..... ..++|+++|+||+|+.+... .++...... ....++++++|+++|.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~---~~~~p~iiv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPS---LEGIPLLVLGNKNDLPGALS----VDELIEQMNLKSITDREVSCYSISCKEKTNI 149 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChh---hcCCCEEEEEeCccccCCcC----HHHHHHHhCcccccCCceEEEEEEeccCCCh
Confidence 9999888877777766654321 22789999999999876421 111211111 112267899999999999
Q ss_pred HHHHHHHHH
Q 028647 166 EEAFQCIAK 174 (206)
Q Consensus 166 ~~l~~~l~~ 174 (206)
++++++|.+
T Consensus 150 ~~l~~~l~~ 158 (159)
T cd04159 150 DIVLDWLIK 158 (159)
T ss_pred HHHHHHHhh
Confidence 999999975
No 125
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.95 E-value=5.7e-26 Score=158.27 Aligned_cols=155 Identities=21% Similarity=0.207 Sum_probs=106.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
+.|+++|.+|+|||||+++|.+.. +.....++.+.+.....+.+.+ ...+.+|||||++.+.......+..+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 478999999999999999999643 2233334444444444444442 357899999999988777777888999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc--CCCcEEEeecc
Q 028647 86 LVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK--GNIPYFETSAK 160 (206)
Q Consensus 86 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~S~~ 160 (206)
+|+|+++ +++.+.+ ..+ .... ..|+++++||+|+.+........++..++.... ...+++++|++
T Consensus 80 ~V~d~~~~~~~~~~~~~----~~~-~~~~-----~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (164)
T cd04171 80 LVVAADEGIMPQTREHL----EIL-ELLG-----IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAV 149 (164)
T ss_pred EEEECCCCccHhHHHHH----HHH-HHhC-----CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCC
Confidence 9999987 3332222 111 1111 238999999999976421222334444444442 34789999999
Q ss_pred CCCCHHHHHHHHHH
Q 028647 161 EGINVEEAFQCIAK 174 (206)
Q Consensus 161 ~~~~i~~l~~~l~~ 174 (206)
++.|++++++.+.+
T Consensus 150 ~~~~v~~l~~~l~~ 163 (164)
T cd04171 150 TGEGIEELKEYLDE 163 (164)
T ss_pred CCcCHHHHHHHHhh
Confidence 99999999998754
No 126
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=1.9e-25 Score=170.58 Aligned_cols=167 Identities=19% Similarity=0.155 Sum_probs=123.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh-------hccchhhhhcc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRG 80 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~ 80 (206)
...|+++|.||||||||+++|+..+......+.+|..+....+.+.+. ..+.+||+||..+ ....+...+..
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~-~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY-KSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC-cEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 467999999999999999999987655455566666666666666322 3578999999532 11223334567
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (206)
++++++|+|+++.++++.+..|..++...... ..+.|+++|+||+|+.+. .....+..+.+....+ .+++++||+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~--L~~kp~IIV~NKiDL~~~--~~~~~~~~~~~~~~~~-~~i~~iSAk 311 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPE--LADKPRILVLNKIDLLDE--EEEREKRAALELAALG-GPVFLISAV 311 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhh--cccCCeEEEEECcccCCc--hhHHHHHHHHHHHhcC-CCEEEEEcC
Confidence 99999999999888888888888877654321 126799999999999764 2223334444555554 789999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC
Q 028647 161 EGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 161 ~~~~i~~l~~~l~~~~~~~~ 180 (206)
+++|+++++++|.+.+.+.+
T Consensus 312 tg~GI~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 312 TGEGLDELLRALWELLEEAR 331 (335)
T ss_pred CCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999886543
No 127
>PTZ00099 rab6; Provisional
Probab=99.94 E-value=6.7e-25 Score=154.10 Aligned_cols=145 Identities=33% Similarity=0.570 Sum_probs=125.8
Q ss_pred CCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhc
Q 028647 31 KKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQA 110 (206)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 110 (206)
+.|...+.++.+.++....+.+++..+.+.||||+|++.+...+..+++++|++|+|||++++++++.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 35667788999989988888899999999999999999999999999999999999999999999999999998887653
Q ss_pred CCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCcc
Q 028647 111 SPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182 (206)
Q Consensus 111 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~ 182 (206)
. ...|+++|+||+|+.+. +.+..+++..++..++ ..++++||++|.|++++|++|++.+.+..+.
T Consensus 83 ~----~~~piilVgNK~DL~~~--~~v~~~e~~~~~~~~~-~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 83 G----KDVIIALVGNKTDLGDL--RKVTYEEGMQKAQEYN-TMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred C----CCCeEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 2 26899999999999754 4567777888888776 7899999999999999999999999774433
No 128
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=2.4e-25 Score=155.81 Aligned_cols=155 Identities=18% Similarity=0.137 Sum_probs=105.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc---------chhhhhcc
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---------LGVAFYRG 80 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~~~ 80 (206)
+|+++|.+|+|||||+++|.+..+.....+..+........... .+.+.+|||||+..... ........
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 79999999999999999999887653333333333433333333 36889999999742110 01111123
Q ss_pred CcEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEee
Q 028647 81 ADCCVLVYDVNSMKSF--DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETS 158 (206)
Q Consensus 81 ~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (206)
.|++++|+|+++..++ +....|+..+.... .+.|+++|+||+|+.+.. ... ...++... ...+++++|
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~--~~~--~~~~~~~~-~~~~~~~~S 149 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-----KNKPVIVVLNKIDLLTFE--DLS--EIEEEEEL-EGEEVLKIS 149 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-----CcCCeEEEEEccccCchh--hHH--HHHHhhhh-ccCceEEEE
Confidence 6899999999987543 44556666664432 178999999999997642 111 13344433 348899999
Q ss_pred ccCCCCHHHHHHHHHHHH
Q 028647 159 AKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 159 ~~~~~~i~~l~~~l~~~~ 176 (206)
|++|.|++++++++.+.+
T Consensus 150 a~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 150 TLTEEGVDEVKNKACELL 167 (168)
T ss_pred ecccCCHHHHHHHHHHHh
Confidence 999999999999999876
No 129
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=2.9e-25 Score=155.71 Aligned_cols=160 Identities=19% Similarity=0.157 Sum_probs=111.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh----hccchhhh---hccCc
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAF---YRGAD 82 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~d 82 (206)
+|+++|.+|+|||||+++|.+........+..+.......+.+.+. ..+.+|||||... .......+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999976543222233333333333334432 3789999999632 21222333 34699
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccC
Q 028647 83 CCVLVYDVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE 161 (206)
Q Consensus 83 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 161 (206)
++++|+|++++ .+++.+..|...+...... ..+.|+++|+||+|+.+.. ...+....+.......+++++|+++
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~--~~~~p~ivv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~ 155 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPE--LLEKPRIVVLNKIDLLDEE---ELFELLKELLKELWGKPVFPISALT 155 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCcc--ccccccEEEEEchhcCCch---hhHHHHHHHHhhCCCCCEEEEecCC
Confidence 99999999998 7888888887777654321 1268999999999997642 2234444555543347899999999
Q ss_pred CCCHHHHHHHHHHH
Q 028647 162 GINVEEAFQCIAKN 175 (206)
Q Consensus 162 ~~~i~~l~~~l~~~ 175 (206)
+.|++++++++.+.
T Consensus 156 ~~gi~~l~~~i~~~ 169 (170)
T cd01898 156 GEGLDELLRKLAEL 169 (170)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999865
No 130
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.94 E-value=1.3e-27 Score=160.56 Aligned_cols=169 Identities=30% Similarity=0.538 Sum_probs=157.9
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
+..++++|+|..++||||++++++.+-|...+..+.+.++..+.+.+.+..+.+.+||++|+++++.....+++++.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 55799999999999999999999999999999999999999888888888888999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+||+.+|..||+....|...+..... .+|.++|-||+|+.++ .+...++++.+++.++ ..++-+|+++..|+
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~~-----~IPtV~vqNKIDlved--s~~~~~evE~lak~l~-~RlyRtSvked~NV 169 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKETE-----RIPTVFVQNKIDLVED--SQMDKGEVEGLAKKLH-KRLYRTSVKEDFNV 169 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHhc-----cCCeEEeeccchhhHh--hhcchHHHHHHHHHhh-hhhhhhhhhhhhhh
Confidence 99999999999999999999988776 8999999999999987 6778888888988888 89999999999999
Q ss_pred HHHHHHHHHHHHhcCcc
Q 028647 166 EEAFQCIAKNALKSGEE 182 (206)
Q Consensus 166 ~~l~~~l~~~~~~~~~~ 182 (206)
..+|.+|++.+.+...+
T Consensus 170 ~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 170 MHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998877666
No 131
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=3e-25 Score=156.91 Aligned_cols=155 Identities=19% Similarity=0.288 Sum_probs=110.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCC------ccceeEEEEEE--Ee---CCeEEEEEEEeCCChhhhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK-------FSNQYKA------TIGADFLTKEV--QF---EDRLFTLQIWDTAGQERFQ 71 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~-------~~~~~~~------~~~~~~~~~~~--~~---~~~~~~~~i~D~~g~~~~~ 71 (206)
+|+++|.+++|||||+++|++.. +...+.+ +.+.+...... .+ ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998742 1111111 11223332222 22 5667889999999999999
Q ss_pred cchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC-
Q 028647 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG- 150 (206)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 150 (206)
..+..+++.+|++++|+|++++.+.+....|.... . .++|+++|+||+|+.+.. ..+...++.+.++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~----~~~~iiiv~NK~Dl~~~~----~~~~~~~~~~~~~~ 149 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----E----NNLEIIPVINKIDLPSAD----PERVKQQIEDVLGL 149 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----H----cCCCEEEEEECCCCCcCC----HHHHHHHHHHHhCC
Confidence 99999999999999999999876655554443221 1 178999999999986531 1222334444443
Q ss_pred -CCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647 151 -NIPYFETSAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 151 -~~~~~~~S~~~~~~i~~l~~~l~~~~ 176 (206)
...++++||++|.|+++++++|.+.+
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 150 DPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 23589999999999999999998875
No 132
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=1.5e-25 Score=157.57 Aligned_cols=158 Identities=23% Similarity=0.385 Sum_probs=115.9
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
....++|+++|++|+|||||++++.+..+. ...++.+.+. ..+...+ ..+.+||++|+..+...+..++..+|++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 345799999999999999999999987553 2344444332 3344454 5789999999988888888888999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc----CCCcEEEeecc
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK----GNIPYFETSAK 160 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~S~~ 160 (206)
++|+|+.+..++.....++..+..... ..++|+++++||+|+.+... .+++.+..... ..++++++||+
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~----~~~i~~~l~~~~~~~~~~~~~~~Sa~ 158 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEK---LAGVPVLVFANKQDLATAAP----AEEIAEALNLHDLRDRTWHIQACSAK 158 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChh---hcCCCEEEEEECCCCccCCC----HHHHHHHcCCcccCCCeEEEEEeECC
Confidence 999999998888877777666654322 12689999999999865421 22222221111 11357899999
Q ss_pred CCCCHHHHHHHHHH
Q 028647 161 EGINVEEAFQCIAK 174 (206)
Q Consensus 161 ~~~~i~~l~~~l~~ 174 (206)
+|+|+++++++|.+
T Consensus 159 ~~~gi~~~~~~l~~ 172 (173)
T cd04155 159 TGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999975
No 133
>PLN00023 GTP-binding protein; Provisional
Probab=99.94 E-value=9.6e-25 Score=163.35 Aligned_cols=145 Identities=28% Similarity=0.527 Sum_probs=121.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC-------------CeEEEEEEEeCCChhhhcc
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-------------DRLFTLQIWDTAGQERFQS 72 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~D~~g~~~~~~ 72 (206)
...+||+|+|..|||||||+++|..+.+...+.++.+.++....+.++ +..+.+.|||++|++.+..
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 456999999999999999999999999888888999888777766664 2468899999999999999
Q ss_pred chhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCC--------CCCCCcEEEEEeCCCCCCCCc-cc---ccHH
Q 028647 73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS--------DPDNFPFVVLGNKIDVDGGNS-RV---VSEK 140 (206)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--------~~~~~p~ivv~nK~Dl~~~~~-~~---~~~~ 140 (206)
.+..+++++|++|+|||+++..+++.+..|+..+....... ...++|++||+||+||..... +. +..+
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e 178 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVD 178 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHH
Confidence 99999999999999999999999999999999997764210 112589999999999976432 22 3678
Q ss_pred HHHHHHHhcC
Q 028647 141 KARAWCASKG 150 (206)
Q Consensus 141 ~~~~~~~~~~ 150 (206)
++++|+...+
T Consensus 179 ~a~~~A~~~g 188 (334)
T PLN00023 179 AARQWVEKQG 188 (334)
T ss_pred HHHHHHHHcC
Confidence 9999998866
No 134
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=1.8e-24 Score=149.48 Aligned_cols=157 Identities=26% Similarity=0.546 Sum_probs=126.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
+||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+..+...+....+.++.++.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 79999999999999999999998877777788888887777777777788999999999888888888888999999999
Q ss_pred ECCCh-hhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647 89 DVNSM-KSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE 166 (206)
Q Consensus 89 d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (206)
|.... .++.... .+...+...... +.|+++++||+|+.... ..+.........+..+++++||.++.|++
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~~----~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~sa~~~~gv~ 153 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAES----NVPIILVGNKIDLRDAK----LKTHVAFLFAKLNGEPIIPLSAETGKNID 153 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhccc----CCcEEEEEEcccCCcch----hhHHHHHHHhhccCCceEEeecCCCCCHH
Confidence 98876 5655554 566555554432 67999999999997642 33444444555556789999999999999
Q ss_pred HHHHHHH
Q 028647 167 EAFQCIA 173 (206)
Q Consensus 167 ~l~~~l~ 173 (206)
+++++|.
T Consensus 154 ~~~~~l~ 160 (161)
T TIGR00231 154 SAFKIVE 160 (161)
T ss_pred HHHHHhh
Confidence 9999874
No 135
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=1.1e-25 Score=152.84 Aligned_cols=148 Identities=19% Similarity=0.284 Sum_probs=106.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc------cchhhhh--cc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFY--RG 80 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~--~~ 80 (206)
++|+++|.||+|||||+|+|++........|++|.+.....+.+.+ ..+.++|+||..... .....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999886656677777777777787777 567899999943322 2223333 57
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (206)
.|++++|+|+++.+.- ..+..++... ++|+++++||+|.......... ...+.+.++ ++++++||+
T Consensus 79 ~D~ii~VvDa~~l~r~---l~l~~ql~e~-------g~P~vvvlN~~D~a~~~g~~id---~~~Ls~~Lg-~pvi~~sa~ 144 (156)
T PF02421_consen 79 PDLIIVVVDATNLERN---LYLTLQLLEL-------GIPVVVVLNKMDEAERKGIEID---AEKLSERLG-VPVIPVSAR 144 (156)
T ss_dssp SSEEEEEEEGGGHHHH---HHHHHHHHHT-------TSSEEEEEETHHHHHHTTEEE----HHHHHHHHT-S-EEEEBTT
T ss_pred CCEEEEECCCCCHHHH---HHHHHHHHHc-------CCCEEEEEeCHHHHHHcCCEEC---HHHHHHHhC-CCEEEEEeC
Confidence 9999999999875432 2333333322 8899999999998875444443 444555566 899999999
Q ss_pred CCCCHHHHHHHH
Q 028647 161 EGINVEEAFQCI 172 (206)
Q Consensus 161 ~~~~i~~l~~~l 172 (206)
+++|++++++.|
T Consensus 145 ~~~g~~~L~~~I 156 (156)
T PF02421_consen 145 TGEGIDELKDAI 156 (156)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHhhC
Confidence 999999999875
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=9.2e-25 Score=157.57 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=110.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh---------hccchhh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVA 76 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~ 76 (206)
++.++|+|+|++|||||||++++++..+.....+..+.+.....+.+.+. ..+.+|||||... +... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-LE 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-HH
Confidence 44589999999999999999999987654333334444444444555443 2688999999632 1111 12
Q ss_pred hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE 156 (206)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
.+..+|++++|+|++++.++.....|...+..... .+.|+++|+||+|+.+... .. .+.... ..++++
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~----~~~~viiV~NK~Dl~~~~~--~~-----~~~~~~-~~~~~~ 184 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGA----EDIPMILVLNKIDLLDDEE--LE-----ERLEAG-RPDAVF 184 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc----CCCCEEEEEEccccCChHH--HH-----HHhhcC-CCceEE
Confidence 35689999999999998877766665554433221 2689999999999976421 11 223333 378999
Q ss_pred eeccCCCCHHHHHHHHHHH
Q 028647 157 TSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 157 ~S~~~~~~i~~l~~~l~~~ 175 (206)
+||+++.|+++++++|.++
T Consensus 185 ~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 185 ISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred EEcCCCCCHHHHHHHHHhh
Confidence 9999999999999999875
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=3.5e-25 Score=150.86 Aligned_cols=136 Identities=24% Similarity=0.325 Sum_probs=98.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh----hhccchhhhhccCcEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----RFQSLGVAFYRGADCCV 85 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~d~~i 85 (206)
||+++|++|+|||||+++|.+..+. +.++.+. .+.. .+||+||+. .+.......++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~-------~~~~-----~~iDt~G~~~~~~~~~~~~~~~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV-------EYND-----GAIDTPGEYVENRRLYSALIVTAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeE-------EEcC-----eeecCchhhhhhHHHHHHHHHHhhcCCEEE
Confidence 7999999999999999999987542 2222221 1222 589999973 22222223578999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|+|++++.++.. ..|... . ..|+++|+||+|+.+. ....++..++++..+..+++++||++|.|+
T Consensus 68 lv~d~~~~~s~~~-~~~~~~----~------~~p~ilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 133 (142)
T TIGR02528 68 LVQSATDPESRFP-PGFASI----F------VKPVIGLVTKIDLAEA---DVDIERAKELLETAGAEPIFEISSVDEQGL 133 (142)
T ss_pred EEecCCCCCcCCC-hhHHHh----c------cCCeEEEEEeeccCCc---ccCHHHHHHHHHHcCCCcEEEEecCCCCCH
Confidence 9999999887654 233221 1 3499999999998652 334566677777766458999999999999
Q ss_pred HHHHHHHH
Q 028647 166 EEAFQCIA 173 (206)
Q Consensus 166 ~~l~~~l~ 173 (206)
+++|+++.
T Consensus 134 ~~l~~~l~ 141 (142)
T TIGR02528 134 EALVDYLN 141 (142)
T ss_pred HHHHHHHh
Confidence 99999874
No 138
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.93 E-value=2.7e-24 Score=161.11 Aligned_cols=158 Identities=20% Similarity=0.108 Sum_probs=109.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc--------cchhhhhcc
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--------SLGVAFYRG 80 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~~ 80 (206)
+|+++|.||+|||||+|+|++..+.. ...+.++..... .+...+. .++.+|||||..... ......+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 58999999999999999999987643 333334333322 2222222 468999999964321 123456788
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (206)
+|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+.+. ....+....+....+..+++++||+
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~-------~~~p~ilV~NK~Dl~~~---~~~~~~~~~~~~~~~~~~v~~iSA~ 147 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN-------LKRPVVLTRNKLDNKFK---DKLLPLIDKYAILEDFKDIVPISAL 147 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh-------cCCCEEEEEECeeCCCH---HHHHHHHHHHHhhcCCCceEEEecC
Confidence 99999999999876653 222332221 16899999999999742 2233445555555554589999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCc
Q 028647 161 EGINVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 161 ~~~~i~~l~~~l~~~~~~~~~ 181 (206)
+|.|+++++++|.+.+....+
T Consensus 148 ~g~gi~~L~~~l~~~l~~~~~ 168 (270)
T TIGR00436 148 TGDNTSFLAAFIEVHLPEGPF 168 (270)
T ss_pred CCCCHHHHHHHHHHhCCCCCC
Confidence 999999999999998855443
No 139
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.93 E-value=4.4e-24 Score=149.34 Aligned_cols=159 Identities=22% Similarity=0.231 Sum_probs=110.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC-CeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
.|+|+|.+|+|||||+++|....+.....++.+.+.....+..+ +....+.+|||||+..+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999887766544455444444444443 13467899999999888888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----c-CCCcEEEeeccCCC
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----K-GNIPYFETSAKEGI 163 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~S~~~~~ 163 (206)
|+++....+.. ..+..+.. .++|+++|+||+|+..... ....+....+... . ...+++++|+++|.
T Consensus 82 d~~~~~~~~~~-~~~~~~~~-------~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA-------ANVPFIVALNKIDKPNANP-ERVKNELSELGLQGEDEWGGDVQIVPTSAKTGE 152 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH-------cCCCEEEEEEceecccccH-HHHHHHHHHhhccccccccCcCcEEEeecccCC
Confidence 99875332221 11122211 1789999999999875321 1111222222111 1 23689999999999
Q ss_pred CHHHHHHHHHHHHH
Q 028647 164 NVEEAFQCIAKNAL 177 (206)
Q Consensus 164 ~i~~l~~~l~~~~~ 177 (206)
|+++++++|.+...
T Consensus 153 gi~~l~~~l~~~~~ 166 (168)
T cd01887 153 GIDDLLEAILLLAE 166 (168)
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999988763
No 140
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.93 E-value=3.4e-24 Score=153.38 Aligned_cols=162 Identities=17% Similarity=0.164 Sum_probs=109.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc--CCCCCCC------------CCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccch
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN--KKFSNQY------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG 74 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 74 (206)
.+|+++|.+++|||||+++|+. +.+...+ ..+.+.+.......+......+.+|||||++.+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999997 4443322 1223344444444444555789999999999999999
Q ss_pred hhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc-----
Q 028647 75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK----- 149 (206)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~----- 149 (206)
..+++.+|++++|+|+++.. ......++..... .++|+++|+||+|+.+.. .....++..++...+
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~-------~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~ 153 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE-------LGLKPIVVINKIDRPDAR-PEEVVDEVFDLFIELGATEE 153 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH-------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHHHHhCCccc
Confidence 99999999999999998742 1222233332221 178999999999997542 222344555554322
Q ss_pred -CCCcEEEeeccCCCCHHHH------HHHHHHHHHhc
Q 028647 150 -GNIPYFETSAKEGINVEEA------FQCIAKNALKS 179 (206)
Q Consensus 150 -~~~~~~~~S~~~~~~i~~l------~~~l~~~~~~~ 179 (206)
.+++++++||++|.|+.++ +++|++++.++
T Consensus 154 ~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~ 190 (194)
T cd01891 154 QLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEH 190 (194)
T ss_pred cCccCEEEeehhccccccccccchhhHHHHHHHHHhc
Confidence 1378999999999876443 44555555443
No 141
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.92 E-value=2.1e-25 Score=145.12 Aligned_cols=165 Identities=23% Similarity=0.412 Sum_probs=130.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
+..+.+.++|-.+||||||++....+.+.....|+.|.+.+ .+..+.+.+.+||.||+..+...|..+.+.+++++
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aiv 93 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIV 93 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEE
Confidence 34688999999999999999999999988888998885442 34455578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|+|+++++.++....-++.++...+-. ++|++|++||.|+.++-......++.....-...-+.++.+|+++..|+
T Consensus 94 Y~VDaad~~k~~~sr~EL~~LL~k~~l~---gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 94 YVVDAADPDKLEASRSELHDLLDKPSLT---GIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNI 170 (186)
T ss_pred EEeecCCcccchhhHHHHHHHhcchhhc---CCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccH
Confidence 9999999999888877777766544332 8999999999999876322222222111111222367899999999999
Q ss_pred HHHHHHHHHHHH
Q 028647 166 EEAFQCIAKNAL 177 (206)
Q Consensus 166 ~~l~~~l~~~~~ 177 (206)
+-+.+||+++--
T Consensus 171 d~~~~Wli~hsk 182 (186)
T KOG0075|consen 171 DITLDWLIEHSK 182 (186)
T ss_pred HHHHHHHHHHhh
Confidence 999999998753
No 142
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=7e-24 Score=146.86 Aligned_cols=148 Identities=22% Similarity=0.257 Sum_probs=108.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc------hhhhhc--cCcEE
Q 028647 13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFYR--GADCC 84 (206)
Q Consensus 13 viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~~--~~d~~ 84 (206)
++|.+|+|||||++++.+........++.+.+.....+.+++ ..+.+|||||+..+... ...++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998765555556666666666666765 46899999998765542 344554 89999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN 164 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (206)
++|+|+.+++... .+...+... ++|+++|+||+|+.+... . ......+...++ .+++++|+.++.|
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~~-------~~~~iiv~NK~Dl~~~~~--~-~~~~~~~~~~~~-~~~~~iSa~~~~~ 144 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLEL-------GLPVVVALNMIDEAEKRG--I-KIDLDKLSELLG-VPVVPTSARKGEG 144 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHHc-------CCCEEEEEehhhhccccc--c-hhhHHHHHHhhC-CCeEEEEccCCCC
Confidence 9999999865432 233222211 689999999999976422 1 223345555555 7899999999999
Q ss_pred HHHHHHHHHHHH
Q 028647 165 VEEAFQCIAKNA 176 (206)
Q Consensus 165 i~~l~~~l~~~~ 176 (206)
++++++++.+.+
T Consensus 145 ~~~l~~~l~~~~ 156 (158)
T cd01879 145 IDELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHHHh
Confidence 999999998763
No 143
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.92 E-value=3.3e-24 Score=153.21 Aligned_cols=161 Identities=19% Similarity=0.127 Sum_probs=106.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC----CC---CCCCCCccceeEEEEEEEeC------------CeEEEEEEEeCCChhh
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK----KF---SNQYKATIGADFLTKEVQFE------------DRLFTLQIWDTAGQER 69 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~----~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~g~~~ 69 (206)
++|+++|++|+|||||+++|+.. .+ .....++.+.+.....+.+. +....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 11 11222333333333333332 2356889999999876
Q ss_pred hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH-h
Q 028647 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA-S 148 (206)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~ 148 (206)
+..........+|++++|+|+.+.........+. +... . +.|+++++||+|+..........++..+... .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~-~-----~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~ 152 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI-L-----CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT 152 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH-c-----CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence 6555555667789999999998754333322221 1111 1 5699999999999754323333333333221 1
Q ss_pred -----cCCCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647 149 -----KGNIPYFETSAKEGINVEEAFQCIAKNAL 177 (206)
Q Consensus 149 -----~~~~~~~~~S~~~~~~i~~l~~~l~~~~~ 177 (206)
...++++++|+++|.|+++++++|.+.+.
T Consensus 153 ~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 153 LEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 23478999999999999999999998874
No 144
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=1e-23 Score=161.02 Aligned_cols=162 Identities=19% Similarity=0.150 Sum_probs=117.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc----cc---hhhhhcc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----SL---GVAFYRG 80 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~---~~~~~~~ 80 (206)
...|+++|.||||||||+++|+.........+.++..+....+.+.+ ...+.+||+||..+.. .+ ....+..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 46899999999999999999998765444445555666565666654 2568999999964221 22 2233457
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEe
Q 028647 81 ADCCVLVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 157 (206)
Q Consensus 81 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
++++++|+|+++. ++++.+..|..++...... ..+.|+++|+||+|+.+.. ...+..+.+.+.++ .+++++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~--l~~kp~IIV~NK~DL~~~~---~~~~~~~~l~~~~~-~~vi~i 309 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPE--LAEKPRIVVLNKIDLLDEE---ELAELLKELKKALG-KPVFPI 309 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhh--hccCCEEEEEeCccCCChH---HHHHHHHHHHHHcC-CcEEEE
Confidence 9999999999976 5677777777766544221 1268999999999997642 22344455555555 789999
Q ss_pred eccCCCCHHHHHHHHHHHH
Q 028647 158 SAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 158 S~~~~~~i~~l~~~l~~~~ 176 (206)
||++++|+++++++|.+.+
T Consensus 310 SAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 310 SALTGEGLDELLYALAELL 328 (329)
T ss_pred EccCCcCHHHHHHHHHHHh
Confidence 9999999999999998764
No 145
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=3.4e-23 Score=141.89 Aligned_cols=155 Identities=48% Similarity=0.812 Sum_probs=118.0
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECC
Q 028647 13 ILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN 91 (206)
Q Consensus 13 viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 91 (206)
|+|++|+|||||++++.+... .....++. .+.........+....+.+||+||+..+.......++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998876 34444444 6666777777777789999999999888888888889999999999999
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHH
Q 028647 92 SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQC 171 (206)
Q Consensus 92 ~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~ 171 (206)
++.+......|........ ...+.|+++++||+|+..... ................+++++|+.++.|+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~---~~~~~~~ivv~nk~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 154 (157)
T cd00882 80 DRESFENVKEWLLLILINK---EGENIPIILVGNKIDLPEERV--VSEEELAEQLAKELGVPYFETSAKTGENVEELFEE 154 (157)
T ss_pred CHHHHHHHHHHHHHHHHhh---ccCCCcEEEEEeccccccccc--hHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHH
Confidence 9988888777632222211 122789999999999876522 11221133334445589999999999999999999
Q ss_pred HH
Q 028647 172 IA 173 (206)
Q Consensus 172 l~ 173 (206)
|.
T Consensus 155 l~ 156 (157)
T cd00882 155 LA 156 (157)
T ss_pred Hh
Confidence 86
No 146
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=1.8e-23 Score=150.48 Aligned_cols=154 Identities=21% Similarity=0.215 Sum_probs=102.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC-----------hhhhccch
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-----------QERFQSLG 74 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~ 74 (206)
...++|+++|.+|+|||||+++|.+..+.....++.+.. ...+.+. .+.+||||| ++.+...+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 457899999999999999999999887655555544433 3333332 478999999 45555555
Q ss_pred hhhhc----cCcEEEEEEECCChhhH-H---------HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHH
Q 028647 75 VAFYR----GADCCVLVYDVNSMKSF-D---------NLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140 (206)
Q Consensus 75 ~~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 140 (206)
..++. .++++++|+|.+..... + ....+...+. . .++|+++|+||+|+.+.. .+
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~---~~~p~iiv~NK~Dl~~~~-----~~ 148 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR----E---LGIPPIVAVNKMDKIKNR-----DE 148 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH----H---cCCCeEEEEECccccCcH-----HH
Confidence 44443 46788899998653211 0 0011111111 1 178999999999987542 23
Q ss_pred HHHHHHHhcCC--------CcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647 141 KARAWCASKGN--------IPYFETSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 141 ~~~~~~~~~~~--------~~~~~~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
...++...++. .+++++||++| |+++++++|.+.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 149 VLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 34444444431 25899999999 999999999998744
No 147
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6.1e-24 Score=144.34 Aligned_cols=167 Identities=20% Similarity=0.358 Sum_probs=129.1
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
.+..++|+++|--++||||++.+|-.+.+... .||.|.+... +.+.+ +.+++||.+|++.++..|.+++.+.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~--v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET--VEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE--EEEcc--eEEEEEecCCCcccccchhhhccCCcEE
Confidence 35679999999999999999999987776544 6776655544 44444 7899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN 164 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (206)
|||+|.+|++-+......+..++.. ....+.|+++.+||.|++++.......+.+....-....+.+..++|.+|+|
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~---~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G 165 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAE---PELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEG 165 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcC---cccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeecccccccc
Confidence 9999999998888777766665544 3355899999999999998744222222221111112347889999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 028647 165 VEEAFQCIAKNALKS 179 (206)
Q Consensus 165 i~~l~~~l~~~~~~~ 179 (206)
+.+.++++.+.+..+
T Consensus 166 L~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 166 LYEGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987543
No 148
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=2.4e-23 Score=166.98 Aligned_cols=164 Identities=21% Similarity=0.196 Sum_probs=116.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh----------hhccc-h
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----------RFQSL-G 74 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~-~ 74 (206)
..++|+++|.+|+|||||+++|++..+. ....++++.+.....+.+++.. +.+|||||.. .+... .
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999987643 3455666666666667777754 5799999952 22222 1
Q ss_pred hhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcE
Q 028647 75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPY 154 (206)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (206)
..+++.+|++++|+|++++.+..... ++..+.. .+.|+++|+||+|+.+........+++.+........++
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~-------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 359 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE-------AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPR 359 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCE
Confidence 24568999999999999987766553 3333322 178999999999997532222222333332233344789
Q ss_pred EEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647 155 FETSAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 155 ~~~S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
+++||++|.|++++|+.+.+.+....
T Consensus 360 ~~~SAk~g~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 360 VNISAKTGRAVDKLVPALETALESWD 385 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999998775433
No 149
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.92 E-value=1.7e-23 Score=148.97 Aligned_cols=157 Identities=22% Similarity=0.181 Sum_probs=112.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC----------------ccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKA----------------TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL 73 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 73 (206)
+|+|+|.+|+|||||+++|.+......... +.+........... ...+.+||+||+..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 589999999999999999998765543311 12222222233333 367899999999888888
Q ss_pred hhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc----
Q 028647 74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK---- 149 (206)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---- 149 (206)
+..+++.+|++++|+|+.++.+... ..++..+.. .+.|+++|+||+|+..........+...+.....
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~-------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE-------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIS 150 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH-------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccc
Confidence 8889999999999999987654332 223322221 1789999999999986433333444455444432
Q ss_pred ---------CCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647 150 ---------GNIPYFETSAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 150 ---------~~~~~~~~S~~~~~~i~~l~~~l~~~~ 176 (206)
...+++++|+++|.|++++++++.+.+
T Consensus 151 ~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 151 TKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 247899999999999999999999886
No 150
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.92 E-value=2.5e-23 Score=160.27 Aligned_cols=154 Identities=19% Similarity=0.207 Sum_probs=111.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh---------hhccchhhh
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSLGVAF 77 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~ 77 (206)
..++|+++|.+|+|||||+|+|++........+++|.++....+.+.+. ..+.+|||+|.. .+.. ....
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~-tle~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRA-TLEE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHH-HHHH
Confidence 4589999999999999999999998755445556666676777777433 478899999962 2222 2235
Q ss_pred hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEe
Q 028647 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 157 (206)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
+.++|++++|+|++++.+.+....|...+..... .+.|+++|+||+|+.+. .. ...+.. ...+++++
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~----~~~piIlV~NK~Dl~~~--~~-----v~~~~~--~~~~~i~i 332 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGA----EDIPQLLVYNKIDLLDE--PR-----IERLEE--GYPEAVFV 332 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc----CCCCEEEEEEeecCCCh--Hh-----HHHHHh--CCCCEEEE
Confidence 7889999999999998877766555443332211 26799999999998653 11 111111 12468999
Q ss_pred eccCCCCHHHHHHHHHHH
Q 028647 158 SAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 158 S~~~~~~i~~l~~~l~~~ 175 (206)
||++|.|+++++++|.+.
T Consensus 333 SAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 333 SAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EccCCCCHHHHHHHHHhh
Confidence 999999999999998764
No 151
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.91 E-value=1.8e-23 Score=170.51 Aligned_cols=160 Identities=23% Similarity=0.225 Sum_probs=119.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC---CCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK---KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
+.|+++|++++|||||+++|++. .+.....++.+.+.....+...+ ..+.+||+||++.|...+...+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 47999999999999999999963 33344556666666555666666 67899999999999988888999999999
Q ss_pred EEEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcccccHHHHHHHHHhcC---CCcEEEee
Q 028647 86 LVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSRVVSEKKARAWCASKG---NIPYFETS 158 (206)
Q Consensus 86 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~~~S 158 (206)
+|+|++++ .+.+.+ . +.... ++| +++|+||+|+.+........+++.++...++ .++++++|
T Consensus 79 LVVDa~~G~~~qT~ehl----~-il~~l------gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vS 147 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----A-VLDLL------GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTS 147 (581)
T ss_pred EEEECCCCCcHHHHHHH----H-HHHHc------CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEe
Confidence 99999973 333322 1 11111 677 9999999999864322234456666665542 47899999
Q ss_pred ccCCCCHHHHHHHHHHHHHhcCc
Q 028647 159 AKEGINVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 159 ~~~~~~i~~l~~~l~~~~~~~~~ 181 (206)
+++|.|++++++.|.+.+....+
T Consensus 148 A~tG~GI~eL~~~L~~l~~~~~~ 170 (581)
T TIGR00475 148 AKTGQGIGELKKELKNLLESLDI 170 (581)
T ss_pred CCCCCCchhHHHHHHHHHHhCCC
Confidence 99999999999999887655443
No 152
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=148.32 Aligned_cols=172 Identities=37% Similarity=0.539 Sum_probs=135.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (206)
.++|+++|++|+|||||+++|..+.+...+.++.+..+...........+.+.+||++|++++...+..++..+++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 38999999999999999999999999988898888777777766666578899999999999999999999999999999
Q ss_pred EECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc----------cccHHHHHHHHHhc--CCCcE
Q 028647 88 YDVNS-MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR----------VVSEKKARAWCASK--GNIPY 154 (206)
Q Consensus 88 ~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~--~~~~~ 154 (206)
+|..+ ..+.+....|...+..... .+.|+++++||+|+...... ....+......... ....+
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~----~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAP----DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPAL 160 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCC----CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccce
Confidence 99998 5566667788877766553 26899999999999876321 11122222221111 12348
Q ss_pred EEeecc--CCCCHHHHHHHHHHHHHhcCccc
Q 028647 155 FETSAK--EGINVEEAFQCIAKNALKSGEEE 183 (206)
Q Consensus 155 ~~~S~~--~~~~i~~l~~~l~~~~~~~~~~~ 183 (206)
+++|++ .+.++++++..+++.+.......
T Consensus 161 ~~~s~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (219)
T COG1100 161 LETSAKSLTGPNVNELFKELLRKLLEEIEKL 191 (219)
T ss_pred eEeecccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence 999999 99999999999999997654333
No 153
>PRK15494 era GTPase Era; Provisional
Probab=99.91 E-value=3.8e-23 Score=158.99 Aligned_cols=164 Identities=24% Similarity=0.296 Sum_probs=111.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh-ccc-------hhh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-QSL-------GVA 76 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~-------~~~ 76 (206)
++.++|+++|.+|+|||||+|+|++..+.. ...+.++.......+..++ .++.||||||.... ... ...
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 456799999999999999999999887652 2233344444444555555 46799999997432 211 223
Q ss_pred hhccCcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc-CCCcE
Q 028647 77 FYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK-GNIPY 154 (206)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 154 (206)
.+..+|++++|+|..+. ++... .++..+... +.|.++|+||+|+.+. ...++.+++... ....+
T Consensus 128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~-------~~p~IlViNKiDl~~~-----~~~~~~~~l~~~~~~~~i 193 (339)
T PRK15494 128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRSL-------NIVPIFLLNKIDIESK-----YLNDIKAFLTENHPDSLL 193 (339)
T ss_pred HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc-------CCCEEEEEEhhcCccc-----cHHHHHHHHHhcCCCcEE
Confidence 46789999999998753 23332 233333211 5677899999998642 134455555443 34679
Q ss_pred EEeeccCCCCHHHHHHHHHHHHHhcCccccc
Q 028647 155 FETSAKEGINVEEAFQCIAKNALKSGEEEEI 185 (206)
Q Consensus 155 ~~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~ 185 (206)
+++||++|.|+++++++|.+.+.+..+..+.
T Consensus 194 ~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~ 224 (339)
T PRK15494 194 FPISALSGKNIDGLLEYITSKAKISPWLYAE 224 (339)
T ss_pred EEEeccCccCHHHHHHHHHHhCCCCCCCCCC
Confidence 9999999999999999999988655444433
No 154
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.91 E-value=1.4e-23 Score=149.43 Aligned_cols=162 Identities=20% Similarity=0.223 Sum_probs=110.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCC------------------CCCccceeEEEEEEEeCCeEEEEEEEeCCChh
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQ------------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (206)
+.++|+++|+.++|||||+++|+....... .....+.......+........+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 568999999999999999999985432111 11222333333333312334678999999999
Q ss_pred hhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHH-HHHH
Q 028647 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKAR-AWCA 147 (206)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-~~~~ 147 (206)
.+.......+..+|++++|+|+.++..... ...+..+... ++|+++++||+|+.... .....++.. .+.+
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~-------~~p~ivvlNK~D~~~~~-~~~~~~~~~~~l~~ 152 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL-------GIPIIVVLNKMDLIEKE-LEEIIEEIKEKLLK 152 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT-------T-SEEEEEETCTSSHHH-HHHHHHHHHHHHHH
T ss_pred ceeecccceecccccceeeeeccccccccc-cccccccccc-------ccceEEeeeeccchhhh-HHHHHHHHHHHhcc
Confidence 999988889999999999999987644322 2222222221 78999999999998322 122222333 4444
Q ss_pred hcC-----CCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647 148 SKG-----NIPYFETSAKEGINVEEAFQCIAKNAL 177 (206)
Q Consensus 148 ~~~-----~~~~~~~S~~~~~~i~~l~~~l~~~~~ 177 (206)
..+ .++++++||.+|.|+++|++.|.+.++
T Consensus 153 ~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 153 EYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 432 357999999999999999999998874
No 155
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=2.4e-22 Score=157.24 Aligned_cols=164 Identities=20% Similarity=0.187 Sum_probs=117.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh----hccchhh---hhcc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVA---FYRG 80 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~ 80 (206)
...|+++|.||||||||+++|++.+......+.+|..+....+.+.+ ...+.+||+||..+ ...+... .+..
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier 236 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIER 236 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence 34899999999999999999998765444455556655555555542 24688999999532 1122223 3456
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEe
Q 028647 81 ADCCVLVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 157 (206)
Q Consensus 81 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
++++++|+|+++. +.++....|..++...... ..+.|++||+||+|+... .+...++.+.++ .+++++
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~--L~~kP~IVV~NK~DL~~~------~e~l~~l~~~l~-~~i~~i 307 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPR--LLERPQIVVANKMDLPEA------EENLEEFKEKLG-PKVFPI 307 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchh--ccCCcEEEEEeCCCCcCC------HHHHHHHHHHhC-CcEEEE
Confidence 9999999999864 5566666666666543211 126899999999998432 344555666666 789999
Q ss_pred eccCCCCHHHHHHHHHHHHHhcCc
Q 028647 158 SAKEGINVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 158 S~~~~~~i~~l~~~l~~~~~~~~~ 181 (206)
||++++|+++++++|.+.+.+.+.
T Consensus 308 SA~tgeGI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 308 SALTGQGLDELLYAVAELLEETPE 331 (424)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCcc
Confidence 999999999999999988866543
No 156
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=8.2e-23 Score=163.88 Aligned_cols=155 Identities=20% Similarity=0.290 Sum_probs=109.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh--------hccchhhh
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAF 77 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 77 (206)
...+|+|+|.+|||||||+|+|++.... ....++.+.+.......+.+. .+.+|||||.+. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 4578999999999999999999987643 344555555555555566664 578999999652 33345567
Q ss_pred hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEe
Q 028647 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 157 (206)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
++.+|++|+|+|++++.+... ..+...+.. .+.|+++|+||+|+.... .+....+. .+....+++
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-------~~~piilV~NK~Dl~~~~-----~~~~~~~~--~g~~~~~~i 179 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR-------SGKPVILAANKVDDERGE-----ADAAALWS--LGLGEPHPV 179 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECccCCccc-----hhhHHHHh--cCCCCeEEE
Confidence 889999999999998755432 233333321 178999999999986431 11222222 232345799
Q ss_pred eccCCCCHHHHHHHHHHHHHh
Q 028647 158 SAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 158 S~~~~~~i~~l~~~l~~~~~~ 178 (206)
||++|.|+++++++|++.+.+
T Consensus 180 SA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 180 SALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred EcCCCCCcHHHHHHHHhhccc
Confidence 999999999999999998865
No 157
>COG1159 Era GTPase [General function prediction only]
Probab=99.91 E-value=5e-23 Score=150.31 Aligned_cols=168 Identities=20% Similarity=0.111 Sum_probs=116.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh--------hccchhhhh
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAFY 78 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~ 78 (206)
+.--|+++|.||+|||||+|++++.+..-......|++.....+...+ ..++.|+||||... ........+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 446789999999999999999999988744433333333344443333 47899999999332 223344566
Q ss_pred ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEee
Q 028647 79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETS 158 (206)
Q Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (206)
..+|+++||+|++++... ...+..+.+.. .+.|+++++||+|..... .........+....+...++++|
T Consensus 84 ~dvDlilfvvd~~~~~~~--~d~~il~~lk~------~~~pvil~iNKID~~~~~--~~l~~~~~~~~~~~~f~~ivpiS 153 (298)
T COG1159 84 KDVDLILFVVDADEGWGP--GDEFILEQLKK------TKTPVILVVNKIDKVKPK--TVLLKLIAFLKKLLPFKEIVPIS 153 (298)
T ss_pred ccCcEEEEEEeccccCCc--cHHHHHHHHhh------cCCCeEEEEEccccCCcH--HHHHHHHHHHHhhCCcceEEEee
Confidence 789999999999974321 22222222221 167999999999988752 22245555555566778899999
Q ss_pred ccCCCCHHHHHHHHHHHHHhcCccccc
Q 028647 159 AKEGINVEEAFQCIAKNALKSGEEEEI 185 (206)
Q Consensus 159 ~~~~~~i~~l~~~l~~~~~~~~~~~~~ 185 (206)
|.+|.|++.|.+.+..++.+..+..+.
T Consensus 154 A~~g~n~~~L~~~i~~~Lpeg~~~yp~ 180 (298)
T COG1159 154 ALKGDNVDTLLEIIKEYLPEGPWYYPE 180 (298)
T ss_pred ccccCCHHHHHHHHHHhCCCCCCcCCh
Confidence 999999999999999998665554443
No 158
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=2.1e-22 Score=156.75 Aligned_cols=169 Identities=18% Similarity=0.099 Sum_probs=120.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh-------ccchhhhhcc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYRG 80 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~ 80 (206)
...|+++|.||||||||+|+|++.+......+.+|..+....+.+.+. ..+.++|+||..+- .......+..
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 347999999999999999999987765555666776666666666542 35789999995431 1122345678
Q ss_pred CcEEEEEEECC---ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCC-CcEEE
Q 028647 81 ADCCVLVYDVN---SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGN-IPYFE 156 (206)
Q Consensus 81 ~d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 156 (206)
+|++++|+|++ +.+.++....|+.++...... ..+.|+++|+||+|+... ....+.+.++...++. .++++
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~--L~~kP~IlVlNKiDl~~~---~el~~~l~~l~~~~~~~~~Vi~ 312 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPK--LAEKPRWLVFNKIDLLDE---EEAEERAKAIVEALGWEGPVYL 312 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhh--hcCCCEEEEEeCCccCCh---HHHHHHHHHHHHHhCCCCCEEE
Confidence 99999999988 445566666666666543211 116799999999998753 2223444555554442 37899
Q ss_pred eeccCCCCHHHHHHHHHHHHHhcCcc
Q 028647 157 TSAKEGINVEEAFQCIAKNALKSGEE 182 (206)
Q Consensus 157 ~S~~~~~~i~~l~~~l~~~~~~~~~~ 182 (206)
+||+++.|++++++.|.+.+.+..+.
T Consensus 313 ISA~tg~GIdeLl~~I~~~L~~~~~~ 338 (390)
T PRK12298 313 ISAASGLGVKELCWDLMTFIEENPRE 338 (390)
T ss_pred EECCCCcCHHHHHHHHHHHhhhCccc
Confidence 99999999999999999998765443
No 159
>PRK00089 era GTPase Era; Reviewed
Probab=99.90 E-value=2.5e-22 Score=152.33 Aligned_cols=162 Identities=21% Similarity=0.151 Sum_probs=109.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh--------ccchhhh
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF--------QSLGVAF 77 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~ 77 (206)
+.-.|+|+|++|||||||+|+|++...... ..+.++..........+ ..++.++||||.... .......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 345799999999999999999998876532 23333222222222222 267899999995332 2233446
Q ss_pred hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEe
Q 028647 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 157 (206)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
+..+|++++|+|+++..+ ......+..+. . .+.|+++|+||+|+... .....+....+....+...++++
T Consensus 82 ~~~~D~il~vvd~~~~~~-~~~~~i~~~l~----~---~~~pvilVlNKiDl~~~--~~~l~~~~~~l~~~~~~~~i~~i 151 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIG-PGDEFILEKLK----K---VKTPVILVLNKIDLVKD--KEELLPLLEELSELMDFAEIVPI 151 (292)
T ss_pred HhcCCEEEEEEeCCCCCC-hhHHHHHHHHh----h---cCCCEEEEEECCcCCCC--HHHHHHHHHHHHhhCCCCeEEEe
Confidence 678999999999987322 11122222221 1 16799999999999743 23344555566665666789999
Q ss_pred eccCCCCHHHHHHHHHHHHHhcC
Q 028647 158 SAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 158 S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
||+++.|+++++++|.+.+....
T Consensus 152 SA~~~~gv~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 152 SALKGDNVDELLDVIAKYLPEGP 174 (292)
T ss_pred cCCCCCCHHHHHHHHHHhCCCCC
Confidence 99999999999999999886544
No 160
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.90 E-value=2.6e-22 Score=138.65 Aligned_cols=146 Identities=23% Similarity=0.304 Sum_probs=104.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc--------chhhhhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYR 79 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~ 79 (206)
++|+++|++|+|||||++++.+.... ....++.+.......+..++ ..+.+|||||...+.. .....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 68999999999999999999987643 22234444444444455554 5678999999654432 1234567
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA 159 (206)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 159 (206)
.+|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... . ......+++++|+
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~----------~~~~~vi~v~nK~D~~~~~~~---------~-~~~~~~~~~~~Sa 139 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL----------PADKPIIVVLNKSDLLPDSEL---------L-SLLAGKPIIAISA 139 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh----------hcCCCEEEEEEchhcCCcccc---------c-cccCCCceEEEEC
Confidence 8999999999998776555433222 117899999999999764221 2 2223478999999
Q ss_pred cCCCCHHHHHHHHHHHH
Q 028647 160 KEGINVEEAFQCIAKNA 176 (206)
Q Consensus 160 ~~~~~i~~l~~~l~~~~ 176 (206)
.++.|+++++++|.+.+
T Consensus 140 ~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 140 KTGEGLDELKEALLELA 156 (157)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 99999999999998754
No 161
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.90 E-value=8.8e-23 Score=146.87 Aligned_cols=163 Identities=13% Similarity=0.139 Sum_probs=104.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEEEeC---------------------------C----
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLTKEVQFE---------------------------D---- 54 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~---- 54 (206)
++|+++|+.|+|||||+..+.+... ........+.........+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975421 11111111111111111110 1
Q ss_pred eEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc
Q 028647 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS 134 (206)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (206)
....+.|||+||+..+...+...+..+|++++|+|++++.........+..+ .... ..|+++|+||+|+.+...
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~~-----~~~iiivvNK~Dl~~~~~ 154 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIMG-----LKHIIIVQNKIDLVKEEQ 154 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHcC-----CCcEEEEEEchhccCHHH
Confidence 1157899999999998888888888999999999998742111111122212 1111 247999999999976422
Q ss_pred ccccHHHHHHHHHhc--CCCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647 135 RVVSEKKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAKNAL 177 (206)
Q Consensus 135 ~~~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~l~~~l~~~~~ 177 (206)
.....+.++++...+ ..++++++||++|+|+++++++|.+.+.
T Consensus 155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 155 ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 222334445544432 2478999999999999999999988663
No 162
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=2.6e-22 Score=159.03 Aligned_cols=169 Identities=21% Similarity=0.145 Sum_probs=116.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh-------ccchhhhhc
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYR 79 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~ 79 (206)
...+|+|+|.||||||||+++|+..+......+.+|..+....+.+.+ ..+.+||+||..+. .......+.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 357899999999999999999998765544556666666666666666 56899999995321 111233457
Q ss_pred cCcEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCC-------CCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh
Q 028647 80 GADCCVLVYDVNSM----KSFDNLNNWREEFLIQASPS-------DPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS 148 (206)
Q Consensus 80 ~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~-------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 148 (206)
.+|++++|+|+++. +.++.+..+..++....... ...+.|++||+||+|+.+. .. ..+........
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~e-l~e~l~~~l~~ 312 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--RE-LAEFVRPELEA 312 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--HH-HHHHHHHHHHH
Confidence 79999999999753 23444444444443332210 1226899999999999754 21 22333333344
Q ss_pred cCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCc
Q 028647 149 KGNIPYFETSAKEGINVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 149 ~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~ 181 (206)
.+ ++++++||.+++|+++++++|.+.+...+.
T Consensus 313 ~g-~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 313 RG-WPVFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred cC-CeEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 44 789999999999999999999998866543
No 163
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=2.6e-22 Score=160.02 Aligned_cols=164 Identities=21% Similarity=0.201 Sum_probs=111.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc-----------
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL----------- 73 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------- 73 (206)
...++|+++|.+|+|||||+++|++.... ....++++.+.....+..++. .+.+|||||.......
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 34689999999999999999999986533 333444555554555555554 6789999996443322
Q ss_pred hhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-CcccccHHHHHHHHHhcCCC
Q 028647 74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG-NSRVVSEKKARAWCASKGNI 152 (206)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~ 152 (206)
....++.+|++++|+|++++.+.... .++..+... +.|+++|+||+|+... .......+.+.......+.+
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~~-------~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 319 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDL-RIAGLILEA-------GKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFA 319 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHHc-------CCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCC
Confidence 23467889999999999987665543 222222211 6899999999999721 11111122222222233458
Q ss_pred cEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647 153 PYFETSAKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 153 ~~~~~S~~~~~~i~~l~~~l~~~~~~~ 179 (206)
+++++||++|.|++++++++.+.+...
T Consensus 320 ~vi~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 320 PIVFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 899999999999999999998876543
No 164
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.90 E-value=3.4e-22 Score=158.07 Aligned_cols=153 Identities=20% Similarity=0.280 Sum_probs=113.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc--------hhh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVA 76 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~ 76 (206)
+..++|+++|++|+|||||+|+|++.... ....++++.++....+.+++ ..+.+|||||...+... ...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 45689999999999999999999987542 33456666777777777776 45689999997544322 245
Q ss_pred hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE 156 (206)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
+++.+|++++|+|++++.+++.. |+..+.. .+.|+++|+||+|+.+. ....+...++ .+++.
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-------~~~piIlV~NK~Dl~~~--------~~~~~~~~~~-~~~~~ 340 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK-------SKKPFILVLNKIDLKIN--------SLEFFVSSKV-LNSSN 340 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh-------CCCCEEEEEECccCCCc--------chhhhhhhcC-CceEE
Confidence 77899999999999988776654 5444321 16799999999998643 1123344444 67899
Q ss_pred eeccCCCCHHHHHHHHHHHHHhc
Q 028647 157 TSAKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 157 ~S~~~~~~i~~l~~~l~~~~~~~ 179 (206)
+|+++ .|++++++.+.+.+.+.
T Consensus 341 vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 341 LSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred EEEec-CCHHHHHHHHHHHHHHH
Confidence 99997 69999999999988664
No 165
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.90 E-value=3.1e-22 Score=163.46 Aligned_cols=161 Identities=19% Similarity=0.259 Sum_probs=115.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-------CCCC------CCccceeEEEE--EEEe---CCeEEEEEEEeCCChh
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKF-------SNQY------KATIGADFLTK--EVQF---EDRLFTLQIWDTAGQE 68 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~-------~~~~------~~~~~~~~~~~--~~~~---~~~~~~~~i~D~~g~~ 68 (206)
...|++++|+.++|||||+++|+...- ...+ +...+.++... .+.+ ++..+.+.||||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 357999999999999999999986421 1111 11123333332 2333 4566889999999999
Q ss_pred hhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh
Q 028647 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS 148 (206)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 148 (206)
.|...+..+++.+|++++|+|++++.+.+....|...+. .++|+++|+||+|+.+... .+...++...
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--------~~ipiIiViNKiDl~~~~~----~~~~~el~~~ 149 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--------NDLEIIPVINKIDLPSADP----ERVKKEIEEV 149 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--------cCCCEEEEEECcCCCccCH----HHHHHHHHHH
Confidence 999999999999999999999998766666555543321 1679999999999875321 2222333333
Q ss_pred cC--CCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647 149 KG--NIPYFETSAKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 149 ~~--~~~~~~~S~~~~~~i~~l~~~l~~~~~~~ 179 (206)
++ ...++++||++|.|+++++++|.+.++..
T Consensus 150 lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 150 IGLDASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred hCCCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 33 13589999999999999999999987554
No 166
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=1e-22 Score=143.48 Aligned_cols=159 Identities=21% Similarity=0.197 Sum_probs=104.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh----ccc---hhhhhccCcEEE
Q 028647 13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF----QSL---GVAFYRGADCCV 85 (206)
Q Consensus 13 viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~---~~~~~~~~d~~i 85 (206)
++|++|||||||+++|.+........+.++.......+.+.+ ...+.+||+||.... ... ....+..+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998765322233333334333444441 256799999996321 112 234567899999
Q ss_pred EEEECCCh------hhHHHHHHHHHHHHhhcCC---CCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647 86 LVYDVNSM------KSFDNLNNWREEFLIQASP---SDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE 156 (206)
Q Consensus 86 ~v~d~~~~------~s~~~~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
+|+|+.++ .+++....|...+...... ....+.|+++|+||+|+.... ........... .....++++
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~-~~~~~~~~~ 156 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE--ELEEELVRELA-LEEGAEVVP 156 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh--HHHHHHHHHHh-cCCCCCEEE
Confidence 99999987 4666666666665433211 001268999999999997642 22121122222 223478999
Q ss_pred eeccCCCCHHHHHHHHHHH
Q 028647 157 TSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 157 ~S~~~~~~i~~l~~~l~~~ 175 (206)
+|++++.|++++++++.+.
T Consensus 157 ~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 157 ISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EehhhhcCHHHHHHHHHhh
Confidence 9999999999999998764
No 167
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.90 E-value=3.4e-22 Score=162.55 Aligned_cols=156 Identities=24% Similarity=0.257 Sum_probs=112.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
.++.+|+++|++++|||||+++|.+..+.....++.+.+.....+.+.+.. .+.||||||++.|...+...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 456899999999999999999999887776555555555555555554432 6889999999999988888889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH-------hcC-CCcEEEe
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA-------SKG-NIPYFET 157 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~ 157 (206)
+|+|+++....+....+ .... . .++|+++++||+|+.+.. .++....+. .++ ..+++++
T Consensus 164 LVVda~dgv~~qT~e~i-~~~~----~---~~vPiIVviNKiDl~~~~-----~e~v~~~L~~~g~~~~~~~~~~~~v~i 230 (587)
T TIGR00487 164 LVVAADDGVMPQTIEAI-SHAK----A---ANVPIIVAINKIDKPEAN-----PDRVKQELSEYGLVPEDWGGDTIFVPV 230 (587)
T ss_pred EEEECCCCCCHhHHHHH-HHHH----H---cCCCEEEEEECcccccCC-----HHHHHHHHHHhhhhHHhcCCCceEEEE
Confidence 99999874322222211 1111 1 178999999999997532 122222222 222 2579999
Q ss_pred eccCCCCHHHHHHHHHHH
Q 028647 158 SAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 158 S~~~~~~i~~l~~~l~~~ 175 (206)
||++|+|+++++++|...
T Consensus 231 SAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 231 SALTGDGIDELLDMILLQ 248 (587)
T ss_pred ECCCCCChHHHHHhhhhh
Confidence 999999999999998753
No 168
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=2.5e-22 Score=132.68 Aligned_cols=114 Identities=33% Similarity=0.552 Sum_probs=87.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFS--NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (206)
||+|+|++|||||||+++|.+..+. .......+.++.............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 6999999999999999999988866 23344444555555666677666799999999998888888889999999999
Q ss_pred EECCChhhHHHHHHH---HHHHHhhcCCCCCCCCcEEEEEeCCC
Q 028647 88 YDVNSMKSFDNLNNW---REEFLIQASPSDPDNFPFVVLGNKID 128 (206)
Q Consensus 88 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (206)
||++++.+++.+..+ +..+..... ++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-----~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDK-----NIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSS-----CSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCC-----CCCEEEEEeccC
Confidence 999999999987554 444443222 689999999998
No 169
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.90 E-value=4.7e-22 Score=142.56 Aligned_cols=160 Identities=24% Similarity=0.188 Sum_probs=106.5
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh----------hhhccch
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----------ERFQSLG 74 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~ 74 (206)
....++|+++|.+|+|||||+++|++..+.....++.+.+........ ...+.+|||||. ..+....
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 345689999999999999999999987644444444443333322222 257899999994 2333334
Q ss_pred hhhhcc---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCC
Q 028647 75 VAFYRG---ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGN 151 (206)
Q Consensus 75 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
..+++. .+++++++|.+++.+.... .+. ..... .+.|+++++||+|+.+....+...+.+.++.... .
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~-~~l~~------~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~-~ 168 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMI-EWLKE------YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG-D 168 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHH-HHH-HHHHH------cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc-C
Confidence 444443 4678888998875443221 111 11111 1679999999999976533333344455555544 3
Q ss_pred CcEEEeeccCCCCHHHHHHHHHHHH
Q 028647 152 IPYFETSAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 152 ~~~~~~S~~~~~~i~~l~~~l~~~~ 176 (206)
.+++++|++++.|++++++.|.+.+
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999998776
No 170
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.90 E-value=2.3e-22 Score=142.13 Aligned_cols=152 Identities=19% Similarity=0.176 Sum_probs=100.5
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh----------hhccc
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----------RFQSL 73 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~ 73 (206)
++...++|+|+|.+|+|||||+++|.+..+.....++.+.+.....+..++ .+.+||+||.. .+...
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 346678999999999999999999998764333333443333333333332 57899999942 23333
Q ss_pred hhhhhc---cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC
Q 028647 74 GVAFYR---GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG 150 (206)
Q Consensus 74 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (206)
...+++ .++++++|+|++++.+.... .++..+. . .+.|+++++||+|+..........+++++.+....
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~-~------~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLR-E------RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA 162 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHH-H------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence 334444 36899999999876543433 2222221 1 17899999999999765434445566666666543
Q ss_pred -CCcEEEeeccCCCCHH
Q 028647 151 -NIPYFETSAKEGINVE 166 (206)
Q Consensus 151 -~~~~~~~S~~~~~~i~ 166 (206)
.++++++||++|+|++
T Consensus 163 ~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 DDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCCceEEEECCCCCCCC
Confidence 2589999999999974
No 171
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=2.7e-22 Score=138.64 Aligned_cols=147 Identities=20% Similarity=0.175 Sum_probs=100.2
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc--------chhhhhccCc
Q 028647 12 IILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYRGAD 82 (206)
Q Consensus 12 ~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d 82 (206)
+++|.+|+|||||+++|.+.... ....+..+.+.........+ ..+.+|||||...+.. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999976522 12233334444444455555 5689999999776443 3345678899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG 162 (206)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 162 (206)
++++|+|+.++.+.... .+...+ .. . +.|+++|+||+|+.+.. .. .......+..+++++|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~-~~---~---~~piiiv~nK~D~~~~~--~~-----~~~~~~~~~~~~~~~Sa~~~ 143 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYL-RK---S---KKPVILVVNKVDNIKEE--DE-----AAEFYSLGFGEPIPISAEHG 143 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHH-Hh---c---CCCEEEEEECcccCChH--HH-----HHHHHhcCCCCeEEEecccC
Confidence 99999999876443332 111212 11 1 68999999999997642 11 12223344347899999999
Q ss_pred CCHHHHHHHHHHH
Q 028647 163 INVEEAFQCIAKN 175 (206)
Q Consensus 163 ~~i~~l~~~l~~~ 175 (206)
.|+++++++|.++
T Consensus 144 ~gv~~l~~~l~~~ 156 (157)
T cd01894 144 RGIGDLLDAILEL 156 (157)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999875
No 172
>PRK11058 GTPase HflX; Provisional
Probab=99.90 E-value=3.2e-22 Score=157.43 Aligned_cols=162 Identities=18% Similarity=0.184 Sum_probs=111.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh--ccc------hhhhhcc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF--QSL------GVAFYRG 80 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~------~~~~~~~ 80 (206)
.+|+++|.+|+|||||+|+|++..+.....++.|.+.....+.+.+. ..+.+|||+|.... ... +...+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999987765445556666666666666553 25679999996321 111 2234678
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCc-EEEeec
Q 028647 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIP-YFETSA 159 (206)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S~ 159 (206)
+|++++|+|++++.+.+....|...+..... .+.|+++|+||+|+.... .. .... ...+ .+ ++.+||
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~----~~~pvIiV~NKiDL~~~~--~~---~~~~--~~~~-~~~~v~ISA 344 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDA----HEIPTLLVMNKIDMLDDF--EP---RIDR--DEEN-KPIRVWLSA 344 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhcc----CCCCEEEEEEcccCCCch--hH---HHHH--HhcC-CCceEEEeC
Confidence 9999999999998877766444333322211 268999999999986531 11 1111 1122 33 588999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCccc
Q 028647 160 KEGINVEEAFQCIAKNALKSGEEE 183 (206)
Q Consensus 160 ~~~~~i~~l~~~l~~~~~~~~~~~ 183 (206)
++|.|+++++++|.+.+.......
T Consensus 345 ktG~GIdeL~e~I~~~l~~~~~~~ 368 (426)
T PRK11058 345 QTGAGIPLLFQALTERLSGEVAQH 368 (426)
T ss_pred CCCCCHHHHHHHHHHHhhhccEEE
Confidence 999999999999999986544333
No 173
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=2.9e-22 Score=159.30 Aligned_cols=149 Identities=26% Similarity=0.323 Sum_probs=112.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc--------hhhh
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAF 77 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 77 (206)
..++|+++|.+|+|||||+|+|++.... ....++++.++....+.+++ ..+.+|||||...+... ....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 4589999999999999999999987643 34456666666666777766 46789999997544322 2346
Q ss_pred hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEe
Q 028647 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 157 (206)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
+..+|++++|+|++++.+++....|.. ..+.|+++|+||+|+.+.. ... .....+++++
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~----------~~~~piiiV~NK~DL~~~~--~~~---------~~~~~~~i~i 350 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE----------LKDKPVIVVLNKADLTGEI--DLE---------EENGKPVIRI 350 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh----------cCCCCcEEEEEhhhccccc--hhh---------hccCCceEEE
Confidence 788999999999998877664433322 1278999999999997542 111 2223679999
Q ss_pred eccCCCCHHHHHHHHHHHHHh
Q 028647 158 SAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 158 S~~~~~~i~~l~~~l~~~~~~ 178 (206)
|+++|.|+++++++|.+.+..
T Consensus 351 SAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 351 SAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred EeeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999998864
No 174
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=3e-22 Score=153.90 Aligned_cols=150 Identities=19% Similarity=0.222 Sum_probs=114.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh---------ccchhhhh
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QSLGVAFY 78 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~ 78 (206)
..|+++|.||+|||||+|+|++.+.. .+..|++|.+.......+.+.. +.++||+|.+.. ......++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999998876 5667888888878888888854 889999994422 23445677
Q ss_pred ccCcEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647 79 RGADCCVLVYDVNSMKSF--DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE 156 (206)
Q Consensus 79 ~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
..+|++|||+|....-+- +.+.+++... ++|+++|+||+|-.. ..+...+| -.++...++.
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr~~----------~kpviLvvNK~D~~~------~e~~~~ef-yslG~g~~~~ 144 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILRRS----------KKPVILVVNKIDNLK------AEELAYEF-YSLGFGEPVP 144 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHhc----------CCCEEEEEEcccCch------hhhhHHHH-HhcCCCCceE
Confidence 889999999999874332 2233332211 689999999999542 22333333 4566678999
Q ss_pred eeccCCCCHHHHHHHHHHHHH
Q 028647 157 TSAKEGINVEEAFQCIAKNAL 177 (206)
Q Consensus 157 ~S~~~~~~i~~l~~~l~~~~~ 177 (206)
+||.+|.|+.+|++.+++.+.
T Consensus 145 ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 145 ISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred eehhhccCHHHHHHHHHhhcC
Confidence 999999999999999999984
No 175
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=2.4e-22 Score=138.99 Aligned_cols=143 Identities=20% Similarity=0.223 Sum_probs=99.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh----hhccchhhhhccCcEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----RFQSLGVAFYRGADCCV 85 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~d~~i 85 (206)
+|+++|.+|+|||||+++|.+.... ...+. ...+... .+||+||.. .+.......+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--Cccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 7999999999999999998865311 11111 1222222 269999962 33333344578999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCC-CcEEEeeccCCCC
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGN-IPYFETSAKEGIN 164 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~ 164 (206)
+|+|+++.+++. ..|+..+ . .+.|+++++||+|+.+. ..+...+++...+. .+++++|+++|+|
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~---~-----~~~~ii~v~nK~Dl~~~-----~~~~~~~~~~~~~~~~p~~~~Sa~~g~g 134 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDI---G-----VSKRQIAVISKTDMPDA-----DVAATRKLLLETGFEEPIFELNSHDPQS 134 (158)
T ss_pred EEEeCCCccccc--CHHHHhc---c-----CCCCeEEEEEccccCcc-----cHHHHHHHHHHcCCCCCEEEEECCCccC
Confidence 999999876642 2233222 1 16799999999998652 24556666666653 5899999999999
Q ss_pred HHHHHHHHHHHHHhcC
Q 028647 165 VEEAFQCIAKNALKSG 180 (206)
Q Consensus 165 i~~l~~~l~~~~~~~~ 180 (206)
++++++++.+.+.+..
T Consensus 135 i~~l~~~l~~~~~~~~ 150 (158)
T PRK15467 135 VQQLVDYLASLTKQEE 150 (158)
T ss_pred HHHHHHHHHHhchhhh
Confidence 9999999988875543
No 176
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.89 E-value=1.4e-21 Score=136.20 Aligned_cols=157 Identities=21% Similarity=0.157 Sum_probs=104.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc--------cchhhhhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--------SLGVAFYR 79 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~ 79 (206)
..+|+++|++|+|||||++++.+...........+...... .........+.+||+||..... ......+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE-EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 47899999999999999999998764422221111111111 1122233578899999954322 23344578
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA 159 (206)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 159 (206)
.+|++++|+|+.++.+ .....+...+... +.|+++|+||+|+... .....+....+....+..+++.+|+
T Consensus 82 ~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~-------~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ 151 (168)
T cd04163 82 DVDLVLFVVDASEPIG-EGDEFILELLKKS-------KTPVILVLNKIDLVKD--KEDLLPLLEKLKELGPFAEIFPISA 151 (168)
T ss_pred hCCEEEEEEECCCccC-chHHHHHHHHHHh-------CCCEEEEEEchhcccc--HHHHHHHHHHHHhccCCCceEEEEe
Confidence 8999999999998722 1112222222211 5799999999998743 3333444555555555578999999
Q ss_pred cCCCCHHHHHHHHHHH
Q 028647 160 KEGINVEEAFQCIAKN 175 (206)
Q Consensus 160 ~~~~~i~~l~~~l~~~ 175 (206)
+++.|++++++.|.+.
T Consensus 152 ~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 152 LKGENVDELLEEIVKY 167 (168)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999765
No 177
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=1.3e-21 Score=137.25 Aligned_cols=157 Identities=22% Similarity=0.246 Sum_probs=103.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc-----------chh
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----------LGV 75 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~ 75 (206)
+++|+++|.+|+|||||+++|++..... ...+..+.......+..++. .+.+||+||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5799999999999999999999875432 22333333333344455553 467999999543211 122
Q ss_pred hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc---CCC
Q 028647 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK---GNI 152 (206)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~ 152 (206)
..+..+|++++|+|+.++.+.... .++..+.. .+.|+++++||+|+.+... ....+....+...+ +..
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~-------~~~~~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~ 150 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE-------EGKALVIVVNKWDLVEKDS-KTMKEFKKEIRRKLPFLDYA 150 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh-------cCCCEEEEEeccccCCccH-HHHHHHHHHHHhhcccccCC
Confidence 356789999999999987664433 22222211 1679999999999976521 11111122222322 247
Q ss_pred cEEEeeccCCCCHHHHHHHHHHH
Q 028647 153 PYFETSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 153 ~~~~~S~~~~~~i~~l~~~l~~~ 175 (206)
+++++|++++.|++++++++.+.
T Consensus 151 ~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 151 PIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ceEEEeccCCCCHHHHHHHHHHh
Confidence 89999999999999999998764
No 178
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.89 E-value=5.1e-22 Score=156.37 Aligned_cols=171 Identities=16% Similarity=0.157 Sum_probs=113.0
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEEEe------------------C--C---
Q 028647 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKEVQF------------------E--D--- 54 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~------------------~--~--- 54 (206)
|+.+.++.++|+++|+.++|||||+.+|.+.... .......+.........+ + +
T Consensus 2 ~~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (411)
T PRK04000 2 MWEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSET 81 (411)
T ss_pred CcccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccc
Confidence 7889999999999999999999999999653211 111222222221111000 0 0
Q ss_pred -eEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 55 -RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 55 -~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
....+.|||+||+..+.......+..+|++++|+|++++. ..+... .+..+ .... ..|+++|+||+|+.+.
T Consensus 82 ~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~~l-~~~~-----i~~iiVVlNK~Dl~~~ 154 (411)
T PRK04000 82 ELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLMAL-DIIG-----IKNIVIVQNKIDLVSK 154 (411)
T ss_pred ccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHHHH-HHcC-----CCcEEEEEEeeccccc
Confidence 1257899999999988877777777899999999999643 212111 11111 1111 2368999999999764
Q ss_pred CcccccHHHHHHHHHhc--CCCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647 133 NSRVVSEKKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 133 ~~~~~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
.......+++..+.... ...+++++||++|.|++++++.|.+.+..
T Consensus 155 ~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 155 ERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred hhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 32222334555555432 24789999999999999999999987643
No 179
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=6e-22 Score=128.13 Aligned_cols=159 Identities=18% Similarity=0.331 Sum_probs=123.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
.++++|+.+|-.++||||++.+|..... ....|++| +.+..+.+.+ +.+.+||.+|++..+..|.+++....++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-cccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 3479999999999999999999986552 34455555 4444555556 77899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH----hcCCCcEEEeeccC
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA----SKGNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~S~~~ 161 (206)
||+|.++.+..+.+..-++.++ +.....+.|++|.+||.|++.+... +++.++.. ....+.+.++++.+
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii---~~~em~~~~~LvlANkQDlp~A~~p----qei~d~leLe~~r~~~W~vqp~~a~~ 162 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRII---NDREMRDAIILILANKQDLPDAMKP----QEIQDKLELERIRDRNWYVQPSCALS 162 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHh---CCHhhhcceEEEEecCcccccccCH----HHHHHHhccccccCCccEeecccccc
Confidence 9999998877777666555554 4444558899999999999987533 33333322 22247789999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028647 162 GINVEEAFQCIAKNA 176 (206)
Q Consensus 162 ~~~i~~l~~~l~~~~ 176 (206)
|+|+.+-+.||.+..
T Consensus 163 gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 163 GDGLKEGLSWLSNNL 177 (180)
T ss_pred chhHHHHHHHHHhhc
Confidence 999999999998865
No 180
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.89 E-value=1.4e-21 Score=161.23 Aligned_cols=162 Identities=22% Similarity=0.287 Sum_probs=112.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD--FLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
.+..+|+|+|+.++|||||+++|....+.....++.+.. .+...+...+....+.||||||+..|..++...+..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 466899999999999999999999877664443333332 223333344445789999999999999999889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHH---HHhcC-CCcEEEeec
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAW---CASKG-NIPYFETSA 159 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~S~ 159 (206)
+|+|+|+++....+....+ ..+. ..++|+++++||+|+.+... ....+++..+ ...++ .++++++||
T Consensus 322 aILVVDA~dGv~~QT~E~I-~~~k-------~~~iPiIVViNKiDl~~~~~-e~v~~eL~~~~ll~e~~g~~vpvv~VSA 392 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAI-NYIQ-------AANVPIIVAINKIDKANANT-ERIKQQLAKYNLIPEKWGGDTPMIPISA 392 (742)
T ss_pred EEEEEECcCCCChhhHHHH-HHHH-------hcCceEEEEEECCCccccCH-HHHHHHHHHhccchHhhCCCceEEEEEC
Confidence 9999999875332222221 1111 11789999999999976421 1111111111 12222 368999999
Q ss_pred cCCCCHHHHHHHHHHHH
Q 028647 160 KEGINVEEAFQCIAKNA 176 (206)
Q Consensus 160 ~~~~~i~~l~~~l~~~~ 176 (206)
++|.|+++++++|....
T Consensus 393 ktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 393 SQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCCHHHHHHhhhhhh
Confidence 99999999999998764
No 181
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.89 E-value=2.1e-21 Score=139.56 Aligned_cols=122 Identities=18% Similarity=0.307 Sum_probs=90.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccC-cEEEEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA-DCCVLVY 88 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-d~~i~v~ 88 (206)
+|+++|++|||||||+++|....+...+.++ +...........+....+.+||+||+..+...+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988766554333 2222221221113346789999999999988888889998 9999999
Q ss_pred ECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 028647 89 DVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (206)
Q Consensus 89 d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 133 (206)
|+.+. .++.....++..++...... ..++|+++++||+|+..+.
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~-~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKV-KNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhc-cCCCCEEEEecchhhcccC
Confidence 99987 67777777776665443221 1378999999999997654
No 182
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.88 E-value=1.2e-21 Score=162.93 Aligned_cols=159 Identities=22% Similarity=0.250 Sum_probs=112.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
.++..|+|+|+.++|||||+++|....+......+.+.......+.+.+ ..+.||||||+..|..++...+..+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 5678999999999999999999988776655444444444444455555 56899999999999988888888999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHH---HHHhcC-CCcEEEeeccC
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARA---WCASKG-NIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~S~~~ 161 (206)
+|+|+++...-+....| ... .. .++|+||++||+|+.+...... ..++.+ +...++ .++++++||++
T Consensus 366 LVVdAddGv~~qT~e~i-~~a----~~---~~vPiIVviNKiDl~~a~~e~V-~~eL~~~~~~~e~~g~~vp~vpvSAkt 436 (787)
T PRK05306 366 LVVAADDGVMPQTIEAI-NHA----KA---AGVPIIVAINKIDKPGANPDRV-KQELSEYGLVPEEWGGDTIFVPVSAKT 436 (787)
T ss_pred EEEECCCCCCHhHHHHH-HHH----Hh---cCCcEEEEEECccccccCHHHH-HHHHHHhcccHHHhCCCceEEEEeCCC
Confidence 99999874322222221 111 11 1789999999999976421111 111111 122222 37899999999
Q ss_pred CCCHHHHHHHHHHH
Q 028647 162 GINVEEAFQCIAKN 175 (206)
Q Consensus 162 ~~~i~~l~~~l~~~ 175 (206)
|.|+++++++|...
T Consensus 437 G~GI~eLle~I~~~ 450 (787)
T PRK05306 437 GEGIDELLEAILLQ 450 (787)
T ss_pred CCCchHHHHhhhhh
Confidence 99999999999864
No 183
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=4.1e-21 Score=153.30 Aligned_cols=163 Identities=21% Similarity=0.189 Sum_probs=111.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc-----------c
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----------L 73 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~ 73 (206)
...++|+++|.+|+|||||+++|++... .....++++.+.....+..++ ..+.++||||...... .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 3579999999999999999999997653 234445555555445555555 4578999999532211 1
Q ss_pred hhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCc
Q 028647 74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIP 153 (206)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (206)
...+++.+|++++|+|++++.+.... .++..+... +.|+++|+||+|+.+........+++.......+.++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~~-------~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 320 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDL-RIAGLALEA-------GRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAP 320 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHHc-------CCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCC
Confidence 23467889999999999987665443 222222211 6899999999999743222222223333333345689
Q ss_pred EEEeeccCCCCHHHHHHHHHHHHHh
Q 028647 154 YFETSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 154 ~~~~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
++++||++|.|++++++.+.+....
T Consensus 321 i~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 321 IVFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998876644
No 184
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=3.5e-21 Score=153.73 Aligned_cols=149 Identities=21% Similarity=0.241 Sum_probs=106.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh--------hccchhhhhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAFYR 79 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 79 (206)
++|+++|.+|+|||||+++|.+.... ....++.+.+.....+.+++ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 57999999999999999999987643 23344555555566666666 6789999999765 2233455678
Q ss_pred cCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEe
Q 028647 80 GADCCVLVYDVNSMKSFD--NLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 157 (206)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
.+|++++|+|+.++.+.. .+..|+... +.|+++|+||+|+... .+...++ ..++...++++
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~----------~~piilv~NK~D~~~~------~~~~~~~-~~lg~~~~~~i 142 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRKS----------NKPVILVVNKVDGPDE------EADAYEF-YSLGLGEPYPI 142 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHc----------CCcEEEEEECccCccc------hhhHHHH-HhcCCCCCEEE
Confidence 999999999998754432 233333321 7899999999996542 1222333 23443458999
Q ss_pred eccCCCCHHHHHHHHHHHH
Q 028647 158 SAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 158 S~~~~~~i~~l~~~l~~~~ 176 (206)
||.+|.|++++++.+.+..
T Consensus 143 Sa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 143 SAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred EeeCCCCHHHHHHHHHhhC
Confidence 9999999999999998843
No 185
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.88 E-value=3.6e-21 Score=161.08 Aligned_cols=163 Identities=20% Similarity=0.159 Sum_probs=113.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh---------hccc--h
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSL--G 74 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~--~ 74 (206)
..++|+++|.+|+|||||+|+|++.... ....++++.+.....+.+++.. +.+|||||..+ +... .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 3589999999999999999999988653 3445555666666666677754 56999999531 1111 2
Q ss_pred hhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcE
Q 028647 75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPY 154 (206)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (206)
...++.+|++++|+|++++.+..... ++..+.. .+.|+++|+||+|+.+........++........+..++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~-------~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~i 598 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD-------AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARR 598 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-------cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCE
Confidence 33468899999999999887766543 3333322 178999999999997642222222222222223345788
Q ss_pred EEeeccCCCCHHHHHHHHHHHHHhc
Q 028647 155 FETSAKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 155 ~~~S~~~~~~i~~l~~~l~~~~~~~ 179 (206)
+++||++|.|++++++.+.+.+.+.
T Consensus 599 i~iSAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 599 VNLSAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999988663
No 186
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.88 E-value=5.4e-21 Score=156.39 Aligned_cols=163 Identities=18% Similarity=0.276 Sum_probs=113.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCC--CCCC-----------CCCccceeEEE--EEEEe---CCeEEEEEEEeCCCh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKK--FSNQ-----------YKATIGADFLT--KEVQF---EDRLFTLQIWDTAGQ 67 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~--~~~~-----------~~~~~~~~~~~--~~~~~---~~~~~~~~i~D~~g~ 67 (206)
++..+++++|+.++|||||+.+|+... +... .+...+.++.. ..+.+ ++..+.+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 456799999999999999999998632 1100 01112222222 22222 455688999999999
Q ss_pred hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH
Q 028647 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA 147 (206)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (206)
..+...+...++.+|++++|+|++++...+....|.... . .++|+++|+||+|+.+... .+...++..
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~----~~lpiIvViNKiDl~~a~~----~~v~~ei~~ 152 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----E----NDLEIIPVLNKIDLPAADP----ERVKQEIED 152 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----H----CCCCEEEEEECCCCCcccH----HHHHHHHHH
Confidence 999988999999999999999999876555544443322 1 1789999999999875421 112223333
Q ss_pred hcC--CCcEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647 148 SKG--NIPYFETSAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 148 ~~~--~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
.++ ...++++||++|.|+++++++|.+.++...
T Consensus 153 ~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 153 VIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred HhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 333 134899999999999999999999886543
No 187
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.87 E-value=4.4e-21 Score=132.55 Aligned_cols=154 Identities=18% Similarity=0.158 Sum_probs=104.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc-------chhhhhccCcEE
Q 028647 13 ILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-------LGVAFYRGADCC 84 (206)
Q Consensus 13 viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~d~~ 84 (206)
++|++|+|||||++++++.... .......+............ ...+.+||+||...... .....+..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987554 33333333333333333332 35789999999655433 344577899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN 164 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (206)
++|+|+.++....... +...... .+.|+++|+||+|+..........+............+++++|+.++.|
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~-------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 151 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE-------RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEG 151 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh-------cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCC
Confidence 9999999877655543 2222211 1789999999999886532222111122233344458899999999999
Q ss_pred HHHHHHHHHHH
Q 028647 165 VEEAFQCIAKN 175 (206)
Q Consensus 165 i~~l~~~l~~~ 175 (206)
++++++++.+.
T Consensus 152 v~~l~~~l~~~ 162 (163)
T cd00880 152 IDELREALIEA 162 (163)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 188
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=6.9e-21 Score=151.81 Aligned_cols=151 Identities=20% Similarity=0.260 Sum_probs=108.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh--------hhhccchhhhhcc
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ--------ERFQSLGVAFYRG 80 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~~~~~~~ 80 (206)
+|+++|.+|+|||||+|+|++.... ....++.+.+.......+.+ ..+.+|||||. ..+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999987643 23344555555555666666 45899999995 3344556667889
Q ss_pred CcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEee
Q 028647 81 ADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETS 158 (206)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (206)
+|++++|+|+.++.+... +..++... +.|+++|+||+|+..... ...++ ..++..+++++|
T Consensus 79 ad~vl~vvD~~~~~~~~d~~i~~~l~~~----------~~piilVvNK~D~~~~~~------~~~~~-~~lg~~~~~~vS 141 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDEEIAKWLRKS----------GKPVILVANKIDGKKEDA------VAAEF-YSLGFGEPIPIS 141 (429)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHh----------CCCEEEEEECccCCcccc------cHHHH-HhcCCCCeEEEe
Confidence 999999999987544332 23333221 789999999999875421 11222 345545799999
Q ss_pred ccCCCCHHHHHHHHHHHHHhc
Q 028647 159 AKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 159 ~~~~~~i~~l~~~l~~~~~~~ 179 (206)
|.+|.|++++++.+.+.+...
T Consensus 142 a~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 142 AEHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred CCcCCChHHHHHHHHHhcCcc
Confidence 999999999999999887553
No 189
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=9e-21 Score=145.85 Aligned_cols=163 Identities=23% Similarity=0.181 Sum_probs=122.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh---------hhccc--h
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSL--G 74 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~--~ 74 (206)
.+++|+++|.||+|||||+|+|++.... ....+++|.+.....+.++++. +.++||+|.. ++.+. .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence 4699999999999999999999986544 5667777888888888888854 6789999932 12222 3
Q ss_pred hhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC--CcccccHHHHHHHHHhcCCC
Q 028647 75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG--NSRVVSEKKARAWCASKGNI 152 (206)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~ 152 (206)
...+..+|++++|+|+..+.+-+.. +.+..+... +.++++|+||+|+.+. .......+++.......+++
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~~-------g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a 326 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL-RIAGLIEEA-------GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFA 326 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHHc-------CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCC
Confidence 4566789999999999987663332 223333222 7899999999999875 23344455566666667789
Q ss_pred cEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647 153 PYFETSAKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 153 ~~~~~S~~~~~~i~~l~~~l~~~~~~~ 179 (206)
+++++||.+|.+++++++.+....-..
T Consensus 327 ~i~~iSA~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 327 PIVFISALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred eEEEEEecCCCChHHHHHHHHHHHHHh
Confidence 999999999999999999988766443
No 190
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.87 E-value=4.7e-21 Score=126.13 Aligned_cols=173 Identities=23% Similarity=0.431 Sum_probs=143.6
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
++.-.++|.++|.+..|||||+-+++++.+...+..+.|.+...+++.+.+..+.+.+||.+|+.++......+...+-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 34557999999999999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc---ccccHHHHHHHHHhcCCCcEEEeecc
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS---RVVSEKKARAWCASKGNIPYFETSAK 160 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (206)
++++||++.+.++..+..|+.+-...... -+| |+|++|.|..-.-+ ......+.+.+++..+ ++.+++|+.
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~Nkt----AiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mn-AsL~F~Sts 169 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNKT----AIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMN-ASLFFCSTS 169 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCCc----cce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhC-CcEEEeecc
Confidence 99999999999999999999877544321 345 56799998632211 1222334555666666 899999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCcc
Q 028647 161 EGINVEEAFQCIAKNALKSGEE 182 (206)
Q Consensus 161 ~~~~i~~l~~~l~~~~~~~~~~ 182 (206)
++.|++++|..++..+..-+..
T Consensus 170 ~sINv~KIFK~vlAklFnL~~t 191 (205)
T KOG1673|consen 170 HSINVQKIFKIVLAKLFNLPWT 191 (205)
T ss_pred ccccHHHHHHHHHHHHhCCcee
Confidence 9999999999999988765443
No 191
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.87 E-value=3.7e-20 Score=121.64 Aligned_cols=172 Identities=26% Similarity=0.368 Sum_probs=136.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEEe-CCeEEEEEEEeCCChhhh-ccchhhhhccC
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS--NQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERF-QSLGVAFYRGA 81 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~ 81 (206)
.+..+|+|+|..++|||+++..|+.+.-. ..+.+|.. +.+...+.. ++..-+++++||.|-... ..+-++++.-+
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 45689999999999999999998865543 34556654 444555544 344457899999996555 66678888999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccC
Q 028647 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE 161 (206)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 161 (206)
|++++||+..+++||+.+..+-..|..... ...+|++|++||.|+.++ +.+..+.++.|+..-. +..+++++.+
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk~Kd---KKEvpiVVLaN~rdr~~p--~~vd~d~A~~Wa~rEk-vkl~eVta~d 159 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDKHKD---KKEVPIVVLANKRDRAEP--REVDMDVAQIWAKREK-VKLWEVTAMD 159 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhhccc---cccccEEEEechhhcccc--hhcCHHHHHHHHhhhh-eeEEEEEecc
Confidence 999999999999999988776666655333 236899999999999876 8888999999998887 9999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCcccc
Q 028647 162 GINVEEAFQCIAKNALKSGEEEE 184 (206)
Q Consensus 162 ~~~i~~l~~~l~~~~~~~~~~~~ 184 (206)
...+-+.|.++...+.....+..
T Consensus 160 R~sL~epf~~l~~rl~~pqskS~ 182 (198)
T KOG3883|consen 160 RPSLYEPFTYLASRLHQPQSKST 182 (198)
T ss_pred chhhhhHHHHHHHhccCCccccc
Confidence 99999999999998866444433
No 192
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.87 E-value=3e-21 Score=153.31 Aligned_cols=157 Identities=19% Similarity=0.206 Sum_probs=105.9
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCC--CC-----------------------------CCCCCccceeEEEEEEEe
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK--FS-----------------------------NQYKATIGADFLTKEVQF 52 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~ 52 (206)
..++.++|+++|+.++|||||+++|+... .. .....+.+.+..... +
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~--~ 80 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWK--F 80 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEE--E
Confidence 46778999999999999999999997521 11 111223444444433 4
Q ss_pred CCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHH-HHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 028647 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWRE-EFLIQASPSDPDNFPFVVLGNKIDVDG 131 (206)
Q Consensus 53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (206)
......+.|||+||+..+.......+..+|++++|+|++++++......+.. .+..... ..|+++++||+|+.+
T Consensus 81 ~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-----~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 81 ETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-----INQLIVAINKMDSVN 155 (426)
T ss_pred ccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-----CCeEEEEEEChhccC
Confidence 4444688999999999888777777889999999999998743211111111 1122211 347999999999975
Q ss_pred CCc--ccccHHHHHHHHHhcC----CCcEEEeeccCCCCHHH
Q 028647 132 GNS--RVVSEKKARAWCASKG----NIPYFETSAKEGINVEE 167 (206)
Q Consensus 132 ~~~--~~~~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~~ 167 (206)
... .....+++.+++...+ .++++++||++|.|+.+
T Consensus 156 ~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 156 YDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 321 1233456666666554 36899999999999986
No 193
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.87 E-value=1.7e-20 Score=133.63 Aligned_cols=151 Identities=19% Similarity=0.139 Sum_probs=99.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCC--------------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFS--------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL 73 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 73 (206)
.++|+++|+.++|||||+++|+..... ...+...+.+.......+.....++.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 589999999999999999999753100 000112223333333444444567899999999988888
Q ss_pred hhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcc-cccHHHHHHHHHhcC-
Q 028647 74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSR-VVSEKKARAWCASKG- 150 (206)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~- 150 (206)
....+..+|++++|+|+.....-. ....+..+... ++| +|+++||+|+...... ....+++..+....+
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~-------~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~ 153 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV-------GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGF 153 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc-------CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 888889999999999998643222 12222222111 666 7899999998643211 123345666655543
Q ss_pred ---CCcEEEeeccCCCCHH
Q 028647 151 ---NIPYFETSAKEGINVE 166 (206)
Q Consensus 151 ---~~~~~~~S~~~~~~i~ 166 (206)
.++++++||.+|.|+.
T Consensus 154 ~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 154 DGDNTPIVRGSALKALEGD 172 (195)
T ss_pred cccCCeEEEeeCccccCCC
Confidence 3789999999999853
No 194
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.87 E-value=3.6e-21 Score=151.68 Aligned_cols=166 Identities=16% Similarity=0.151 Sum_probs=108.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEE--------------EEe----CC------eEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKE--------------VQF----ED------RLFT 58 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~--------------~~~----~~------~~~~ 58 (206)
++.++|+++|++++|||||++.|.+.... .......+....... +.. ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 56799999999999999999999753221 111111111111000 000 11 1357
Q ss_pred EEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccccc
Q 028647 59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVS 138 (206)
Q Consensus 59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 138 (206)
+.+||+||++.|...+...+..+|++++|+|++++.........+..+ .... ..|+++++||+|+.+.......
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g-----i~~iIVvvNK~Dl~~~~~~~~~ 155 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG-----IKNIVIVQNKIDLVSKEKALEN 155 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcC-----CCeEEEEEEccccCCHHHHHHH
Confidence 899999999999888888888999999999999643111122222222 1111 2368999999999864322223
Q ss_pred HHHHHHHHHhc--CCCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647 139 EKKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAKNAL 177 (206)
Q Consensus 139 ~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~l~~~l~~~~~ 177 (206)
.+++.++.... ..++++++|+++|+|+++++++|...+.
T Consensus 156 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 156 YEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 34455554432 2378999999999999999999998764
No 195
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.87 E-value=2e-20 Score=156.36 Aligned_cols=153 Identities=20% Similarity=0.247 Sum_probs=109.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc----------hhhh
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL----------GVAF 77 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~ 77 (206)
.++|+++|.||+|||||+|+|++........++.+.+. .+..+......+.++|+||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~--k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVER--KEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEee--EEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 37899999999999999999998765433334444433 33334444467899999997665421 1223
Q ss_pred h--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEE
Q 028647 78 Y--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYF 155 (206)
Q Consensus 78 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (206)
+ ..+|++++|+|+++.+... .+..++... ++|+++++||+|+.+.. . ...+.+++.+.++ .+++
T Consensus 81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e~-------giPvIvVlNK~Dl~~~~--~-i~id~~~L~~~LG-~pVv 146 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNL---YLTLQLLEL-------GIPCIVALNMLDIAEKQ--N-IRIDIDALSARLG-CPVI 146 (772)
T ss_pred HhccCCCEEEEEecCCcchhhH---HHHHHHHHc-------CCCEEEEEEchhhhhcc--C-cHHHHHHHHHHhC-CCEE
Confidence 2 3799999999999865422 233333221 78999999999987542 2 2345566667776 8999
Q ss_pred EeeccCCCCHHHHHHHHHHHH
Q 028647 156 ETSAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 156 ~~S~~~~~~i~~l~~~l~~~~ 176 (206)
++|+.+++|++++++.+.+..
T Consensus 147 piSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 147 PLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEEeecCCCHHHHHHHHHHhh
Confidence 999999999999999998765
No 196
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.87 E-value=2.9e-21 Score=153.40 Aligned_cols=159 Identities=19% Similarity=0.227 Sum_probs=104.0
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCCCCccceeEEEEEEEe
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS-------------------------------NQYKATIGADFLTKEVQF 52 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 52 (206)
..++.++|+++|++++|||||+++|+...-. .+..++.+.+..... +
T Consensus 2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~--~ 79 (425)
T PRK12317 2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKK--F 79 (425)
T ss_pred CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEE--E
Confidence 3567799999999999999999999843211 111334444444333 4
Q ss_pred CCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
....+.+.+|||||+..+.......+..+|++++|+|++++........+...+..... ..|+++++||+|+.+.
T Consensus 80 ~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-----~~~iivviNK~Dl~~~ 154 (425)
T PRK12317 80 ETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-----INQLIVAINKMDAVNY 154 (425)
T ss_pred ecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-----CCeEEEEEEccccccc
Confidence 34447899999999988877766777899999999999872111111111111111111 2369999999999753
Q ss_pred Cc--ccccHHHHHHHHHhcC----CCcEEEeeccCCCCHHHHH
Q 028647 133 NS--RVVSEKKARAWCASKG----NIPYFETSAKEGINVEEAF 169 (206)
Q Consensus 133 ~~--~~~~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~~l~ 169 (206)
.. .....+++.+++...+ .++++++||.+|+|++++.
T Consensus 155 ~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 155 DEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 21 1223455566665554 2679999999999998744
No 197
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.86 E-value=1.6e-20 Score=153.80 Aligned_cols=160 Identities=19% Similarity=0.180 Sum_probs=110.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC---CCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK---KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
-|+++|+.++|||||+++|++. .+......+.+.+.....+...+. ..+.+||+||++.|...+...+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 5899999999999999999863 333344445554443333333222 357899999999998888888899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcccccHHHHHHHHHhcC--CCcEEEeeccCCC
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSRVVSEKKARAWCASKG--NIPYFETSAKEGI 163 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~S~~~~~ 163 (206)
|+|++++..-+. ...+. +.... ++| ++||+||+|+.+........+++.++....+ ..+++++|+++|.
T Consensus 81 VVda~eg~~~qT-~ehl~-il~~l------gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~ 152 (614)
T PRK10512 81 VVACDDGVMAQT-REHLA-ILQLT------GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGR 152 (614)
T ss_pred EEECCCCCcHHH-HHHHH-HHHHc------CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Confidence 999987422111 11111 11111 556 5799999999764322333455566655443 3789999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 028647 164 NVEEAFQCIAKNALK 178 (206)
Q Consensus 164 ~i~~l~~~l~~~~~~ 178 (206)
|++++++.|.+....
T Consensus 153 gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 153 GIDALREHLLQLPER 167 (614)
T ss_pred CCHHHHHHHHHhhcc
Confidence 999999999876543
No 198
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.86 E-value=2.3e-20 Score=130.35 Aligned_cols=153 Identities=23% Similarity=0.254 Sum_probs=101.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh----------hccchhhhhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSLGVAFYR 79 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~ 79 (206)
.|+++|++|+|||||++.+.+..+.....++.+.+.....+..++ .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996555544444544444333343333 788999999432 2233333333
Q ss_pred ---cCcEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH-hcCCCc
Q 028647 80 ---GADCCVLVYDVNSMKS--FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA-SKGNIP 153 (206)
Q Consensus 80 ---~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~ 153 (206)
..+++++++|.....+ ...+..|+... +.|+++++||+|+.................+ .....+
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~----------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~ 147 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL----------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPP 147 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc----------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCc
Confidence 4678999999986532 22233343332 5799999999998654323333333333333 344578
Q ss_pred EEEeeccCCCCHHHHHHHHHHH
Q 028647 154 YFETSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 154 ~~~~S~~~~~~i~~l~~~l~~~ 175 (206)
++++|++++.++++++++|.+.
T Consensus 148 ~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 148 IILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred eEEEecCCCCCHHHHHHHHHHh
Confidence 9999999999999999999875
No 199
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.86 E-value=1.2e-20 Score=154.20 Aligned_cols=146 Identities=19% Similarity=0.254 Sum_probs=107.3
Q ss_pred cCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc------hhhhh--ccCcEEEE
Q 028647 15 GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFY--RGADCCVL 86 (206)
Q Consensus 15 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~~i~ 86 (206)
|.+|+|||||+|+|++........++.+.+.....+.+++. .+++|||||+..+... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999988765555666666666666666664 5789999998766543 23333 36899999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE 166 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (206)
|+|+++.+.. ..+..++.. .+.|+++|+||+|+.+.. .. ..+.+++.+.++ .+++++||++|+|++
T Consensus 79 VvDat~ler~---l~l~~ql~~-------~~~PiIIVlNK~Dl~~~~--~i-~~d~~~L~~~lg-~pvv~tSA~tg~Gi~ 144 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLLE-------LGIPMILALNLVDEAEKK--GI-RIDEEKLEERLG-VPVVPTSATEGRGIE 144 (591)
T ss_pred EecCCcchhh---HHHHHHHHh-------cCCCEEEEEehhHHHHhC--CC-hhhHHHHHHHcC-CCEEEEECCCCCCHH
Confidence 9999875422 222222221 178999999999987542 22 234566777776 899999999999999
Q ss_pred HHHHHHHHHH
Q 028647 167 EAFQCIAKNA 176 (206)
Q Consensus 167 ~l~~~l~~~~ 176 (206)
++++.+.+.+
T Consensus 145 eL~~~i~~~~ 154 (591)
T TIGR00437 145 RLKDAIRKAI 154 (591)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 200
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.86 E-value=2.3e-20 Score=136.18 Aligned_cols=173 Identities=20% Similarity=0.210 Sum_probs=116.5
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh------------hhhcc
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ------------ERFQS 72 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~------------~~~~~ 72 (206)
..+..+|+|+|+||+|||||.|.+++.+.........+++....-+ +.....++.|+||||. ..+..
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 4678999999999999999999999998876665555544433333 3334468999999991 11223
Q ss_pred chhhhhccCcEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc-----------cc--
Q 028647 73 LGVAFYRGADCCVLVYDVNSMKS--FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR-----------VV-- 137 (206)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-----------~~-- 137 (206)
.....+.++|++++++|+++... -..+...+..+ . ++|-++|+||.|....... +.
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y----s-----~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~ 218 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY----S-----KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAK 218 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH----h-----cCCceeeccchhcchhhhHHhhhHHhccccccch
Confidence 44566788999999999995321 12222222222 2 7899999999998654210 01
Q ss_pred -cHHHHHHHHHhc------------CCCcEEEeeccCCCCHHHHHHHHHHHHHhcCccccccC
Q 028647 138 -SEKKARAWCASK------------GNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL 187 (206)
Q Consensus 138 -~~~~~~~~~~~~------------~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~~~ 187 (206)
..+..++|.... +.-.+|.+||.+|+|++++.++|...+....++.+.+.
T Consensus 219 ~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i 281 (379)
T KOG1423|consen 219 LKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADI 281 (379)
T ss_pred hhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCccc
Confidence 111112221111 01248999999999999999999999988888777654
No 201
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=3e-20 Score=155.61 Aligned_cols=155 Identities=20% Similarity=0.199 Sum_probs=106.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh--------hccchhhh
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAF 77 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 77 (206)
...+|+++|.+|+|||||+|+|++.... ....++.+.+.......+.+ ..+.+|||||... +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 4578999999999999999999987543 23345555555444445555 4678999999652 23344556
Q ss_pred hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEe
Q 028647 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 157 (206)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
+..+|++++|+|+.+...... ..+...+.. .+.|+++|+||+|+.... ....++. ..+....+++
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~-------~~~pvIlV~NK~D~~~~~------~~~~~~~-~lg~~~~~~i 416 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR-------AGKPVVLAVNKIDDQASE------YDAAEFW-KLGLGEPYPI 416 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh-------cCCCEEEEEECcccccch------hhHHHHH-HcCCCCeEEE
Confidence 789999999999986422111 123333321 178999999999986431 1122222 2232356899
Q ss_pred eccCCCCHHHHHHHHHHHHHh
Q 028647 158 SAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 158 S~~~~~~i~~l~~~l~~~~~~ 178 (206)
||.+|.|+++++++|++.+..
T Consensus 417 SA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 417 SAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred ECCCCCCchHHHHHHHHhccc
Confidence 999999999999999998865
No 202
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.86 E-value=5.4e-20 Score=134.72 Aligned_cols=155 Identities=20% Similarity=0.197 Sum_probs=104.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc-------cchhhhhccCc
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGVAFYRGAD 82 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d 82 (206)
+|+++|++|+|||||+++|.+........+.++.+.....+.+.+ ..+++||+||..+.. ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998764433344445555555566665 578899999964322 22345788999
Q ss_pred EEEEEEECCChh-hHHHHHHHHHHH----------------------------------------HhhcC----------
Q 028647 83 CCVLVYDVNSMK-SFDNLNNWREEF----------------------------------------LIQAS---------- 111 (206)
Q Consensus 83 ~~i~v~d~~~~~-s~~~~~~~~~~~----------------------------------------~~~~~---------- 111 (206)
++++|+|+++++ ..+.+...+... +....
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998754 222222222110 00000
Q ss_pred -----------CCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647 112 -----------PSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 112 -----------~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~ 176 (206)
......+|+++|+||+|+... ++...++.. ..++++||+++.|++++++.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-------~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-------EELDLLARQ---PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCH-------HHHHHHhcC---CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 001124699999999998642 333344432 4589999999999999999998865
No 203
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.86 E-value=1.2e-20 Score=153.37 Aligned_cols=158 Identities=25% Similarity=0.254 Sum_probs=102.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc----eeEEEEEE------------EeCCeEEEEEEEeCCChhhhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG----ADFLTKEV------------QFEDRLFTLQIWDTAGQERFQ 71 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~----~~~~~~~~------------~~~~~~~~~~i~D~~g~~~~~ 71 (206)
+.-|+++|++++|||||+++|.+..+......+.+ ........ .++.....+.||||||++.+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 34699999999999999999998766543222222 11111110 000011238899999999999
Q ss_pred cchhhhhccCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc----------cc
Q 028647 72 SLGVAFYRGADCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV----------VS 138 (206)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----------~~ 138 (206)
..+...++.+|++++|+|+++ +.+++.+. .+. . .++|+++++||+|+.+..... ..
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~-~------~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~ 152 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILR-M------YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQ 152 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHH-H------cCCCEEEEEECCCccchhhhccCchHHHHHHhh
Confidence 988888999999999999987 34433321 111 1 178999999999997421000 00
Q ss_pred HHH------------HHHHHH-------------hcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647 139 EKK------------ARAWCA-------------SKGNIPYFETSAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 139 ~~~------------~~~~~~-------------~~~~~~~~~~S~~~~~~i~~l~~~l~~~~ 176 (206)
.+. ..++.. ..+..+++++||++|+|+++|+.+|....
T Consensus 153 ~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 153 EIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 000 011111 12247899999999999999999887544
No 204
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=7.3e-20 Score=127.04 Aligned_cols=160 Identities=21% Similarity=0.185 Sum_probs=116.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC----------hhhhccchh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGV 75 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~ 75 (206)
+...-|+++|.+|+|||||+|.|+++.-......++|.+.....+.+++. +.++|.|| .+.+.....
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 45578999999999999999999997755555666666666666777774 67999999 445555566
Q ss_pred hhhcc---CcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC
Q 028647 76 AFYRG---ADCCVLVYDVNSMKSFD--NLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG 150 (206)
Q Consensus 76 ~~~~~---~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (206)
.++.. ..++++++|+..+..-. .+.+|+.+. ++|++||+||+|......+........+......
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~----------~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~ 168 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL----------GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP 168 (200)
T ss_pred HHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc----------CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC
Confidence 66643 67889999998754321 233344333 8999999999999886555544455554333333
Q ss_pred CCc--EEEeeccCCCCHHHHHHHHHHHHHh
Q 028647 151 NIP--YFETSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 151 ~~~--~~~~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
... ++.+|+..+.|++++...|.+.+..
T Consensus 169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 169 PDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 233 8899999999999999999887743
No 205
>PRK10218 GTP-binding protein; Provisional
Probab=99.86 E-value=5.1e-20 Score=150.17 Aligned_cols=164 Identities=20% Similarity=0.244 Sum_probs=116.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc--CCCCCC------------CCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVN--KKFSNQ------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS 72 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 72 (206)
...+|+++|+.++|||||+++|+. +.+... .+...+.++......+....+.+.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 457999999999999999999986 322221 123345555555555555668899999999999999
Q ss_pred chhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc---
Q 028647 73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK--- 149 (206)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--- 149 (206)
.+..+++.+|++++|+|+.+....+. ..++...... ++|.++++||+|+.+...... .+++..+...+
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~~-------gip~IVviNKiD~~~a~~~~v-l~ei~~l~~~l~~~ 154 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFAY-------GLKPIVVINKVDRPGARPDWV-VDQVFDLFVNLDAT 154 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHHc-------CCCEEEEEECcCCCCCchhHH-HHHHHHHHhccCcc
Confidence 99999999999999999987533222 2222222211 789999999999976543322 33444433221
Q ss_pred ---CCCcEEEeeccCCC----------CHHHHHHHHHHHHHhc
Q 028647 150 ---GNIPYFETSAKEGI----------NVEEAFQCIAKNALKS 179 (206)
Q Consensus 150 ---~~~~~~~~S~~~~~----------~i~~l~~~l~~~~~~~ 179 (206)
..++++.+|+.+|. ++..|++.|++.++..
T Consensus 155 ~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 155 DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 13789999999998 5889999988888654
No 206
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.85 E-value=2.6e-20 Score=152.01 Aligned_cols=162 Identities=19% Similarity=0.222 Sum_probs=112.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC--CCCCCC------------CCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccch
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK--KFSNQY------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG 74 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 74 (206)
.+|+++|+.++|||||+++|+.. .+.... +...+.++......+......+.+|||||+..|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 48999999999999999999863 221110 1112333333333333344788999999999999999
Q ss_pred hhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC----
Q 028647 75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG---- 150 (206)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---- 150 (206)
..+++.+|++++|+|+.+... .....++...... ++|+++|+||+|+.+..... ..+++.++...++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~-~qT~~~l~~a~~~-------~ip~IVviNKiD~~~a~~~~-v~~ei~~l~~~~g~~~e 152 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPM-PQTRFVLKKALEL-------GLKPIVVINKIDRPSARPDE-VVDEVFDLFAELGADDE 152 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCc-HHHHHHHHHHHHC-------CCCEEEEEECCCCCCcCHHH-HHHHHHHHHHhhccccc
Confidence 999999999999999986432 2333444433321 78999999999997653222 2344444443211
Q ss_pred --CCcEEEeeccCCC----------CHHHHHHHHHHHHHhc
Q 028647 151 --NIPYFETSAKEGI----------NVEEAFQCIAKNALKS 179 (206)
Q Consensus 151 --~~~~~~~S~~~~~----------~i~~l~~~l~~~~~~~ 179 (206)
.++++++|+++|. |++.+|+.|++.++..
T Consensus 153 ~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 153 QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 2689999999995 7999999999988654
No 207
>PRK12736 elongation factor Tu; Reviewed
Probab=99.85 E-value=4.1e-20 Score=145.17 Aligned_cols=166 Identities=17% Similarity=0.161 Sum_probs=110.3
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC--------------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS--------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (206)
+.++.++|+++|+.++|||||+++|++.... ...+...+.+.......+......+.++|+||+.+
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence 4567899999999999999999999852100 00111223333334444544445788999999998
Q ss_pred hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcccc-cHHHHHHHHH
Q 028647 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSRVV-SEKKARAWCA 147 (206)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~ 147 (206)
|.......+..+|++++|+|+........ ...+..+... ++| +|+++||+|+.+...... ..+++..++.
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~-------g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~ 159 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV-------GVPYLVVFLNKVDLVDDEELLELVEMEVRELLS 159 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc-------CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 88888778889999999999986432222 2222222111 678 678999999975322221 2345666655
Q ss_pred hcC----CCcEEEeeccCCC--------CHHHHHHHHHHHHH
Q 028647 148 SKG----NIPYFETSAKEGI--------NVEEAFQCIAKNAL 177 (206)
Q Consensus 148 ~~~----~~~~~~~S~~~~~--------~i~~l~~~l~~~~~ 177 (206)
..+ .++++++|+.+|. ++..+++.|.+.+.
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 554 2689999999983 57788888877764
No 208
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.85 E-value=8.3e-23 Score=138.29 Aligned_cols=198 Identities=32% Similarity=0.523 Sum_probs=162.9
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeE-EEEEEEeCCChhhhccchhhhhccCc
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQERFQSLGVAFYRGAD 82 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (206)
++...++++|+|.-|+|||+++.+++-..+..++..+.+.++......+++.. +.+++||..|++++..+..-+++.++
T Consensus 21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~ 100 (229)
T KOG4423|consen 21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH 100 (229)
T ss_pred hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence 34567899999999999999999999888888889998888877766666544 47899999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG 162 (206)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 162 (206)
+..+|||+++.-+|+....|.+.+...++.....-+|+++..||+|..... ..........+++..+....+++|++.+
T Consensus 101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a-~~~~~~~~d~f~kengf~gwtets~Ken 179 (229)
T KOG4423|consen 101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSA-KNEATRQFDNFKKENGFEGWTETSAKEN 179 (229)
T ss_pred ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHh-hhhhHHHHHHHHhccCccceeeeccccc
Confidence 999999999999999999999998877766655557789999999987642 2233467778888888889999999999
Q ss_pred CCHHHHHHHHHHHHHhcCccccccCCcccccCCCCCCCCC
Q 028647 163 INVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSS 202 (206)
Q Consensus 163 ~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (206)
.++.+.-+.+++.++....+........+.......-..+
T Consensus 180 kni~Ea~r~lVe~~lvnd~q~~~s~~~~~~~~~l~~~~~s 219 (229)
T KOG4423|consen 180 KNIPEAQRELVEKILVNDEQPIKSSAVDGDKINLRLMQPS 219 (229)
T ss_pred cChhHHHHHHHHHHHhhccCCcccccccccccCccccCcc
Confidence 9999999999999988776666655555544444433333
No 209
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.85 E-value=3.3e-20 Score=123.38 Aligned_cols=136 Identities=26% Similarity=0.405 Sum_probs=99.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC----hhhhccchhhhhccCcEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----QERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----~~~~~~~~~~~~~~~d~~i 85 (206)
||+++|+.|||||||+++|.+... .+..|....+ . -.++|||| ...+.........++|+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~-------~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY-------Y-----DNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe-------c-----ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999998653 2333332211 1 23589999 3344555555667899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
++.|++++.+.-. ..+...+ +.|+|-|+||+|+... ....+..+++.+.-+.-.++.+|+.+|+|+
T Consensus 69 ll~dat~~~~~~p-P~fa~~f----------~~pvIGVITK~Dl~~~---~~~i~~a~~~L~~aG~~~if~vS~~~~eGi 134 (143)
T PF10662_consen 69 LLQDATEPRSVFP-PGFASMF----------NKPVIGVITKIDLPSD---DANIERAKKWLKNAGVKEIFEVSAVTGEGI 134 (143)
T ss_pred EEecCCCCCccCC-chhhccc----------CCCEEEEEECccCccc---hhhHHHHHHHHHHcCCCCeEEEECCCCcCH
Confidence 9999998654221 1122222 6799999999999842 345777778888878778999999999999
Q ss_pred HHHHHHHH
Q 028647 166 EEAFQCIA 173 (206)
Q Consensus 166 ~~l~~~l~ 173 (206)
++|+++|.
T Consensus 135 ~eL~~~L~ 142 (143)
T PF10662_consen 135 EELKDYLE 142 (143)
T ss_pred HHHHHHHh
Confidence 99999874
No 210
>PRK12735 elongation factor Tu; Reviewed
Probab=99.85 E-value=5.3e-20 Score=144.64 Aligned_cols=166 Identities=16% Similarity=0.151 Sum_probs=109.1
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcC-------CC---C----CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNK-------KF---S----NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~-------~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (206)
+.++.++|+++|++++|||||+++|++. .+ . ...+...+.+.......+.....++.|+||||+..
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 4577899999999999999999999852 10 0 00111222333333334444445789999999998
Q ss_pred hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCCc-ccccHHHHHHHHH
Q 028647 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV-VLGNKIDVDGGNS-RVVSEKKARAWCA 147 (206)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~-~~~~~~~~~~~~~ 147 (206)
|.......+..+|++++|+|+.+..... ....+..+.. . ++|.+ +++||+|+.+... .....+++..+..
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~----~---gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ----V---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH----c---CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 8888888888999999999998743222 1222222211 1 67855 6799999975321 1222335666666
Q ss_pred hcC----CCcEEEeeccCCC----------CHHHHHHHHHHHHH
Q 028647 148 SKG----NIPYFETSAKEGI----------NVEEAFQCIAKNAL 177 (206)
Q Consensus 148 ~~~----~~~~~~~S~~~~~----------~i~~l~~~l~~~~~ 177 (206)
.++ .++++++|+.+|. ++..|++.|.+.+.
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 654 2789999999984 57778888777654
No 211
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.84 E-value=1.4e-19 Score=139.69 Aligned_cols=155 Identities=23% Similarity=0.281 Sum_probs=117.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc--------hhh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVA 76 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~ 76 (206)
...++++++|.||+|||||+|.|.+.... ....+++|.++....+.+++ +.+.+.||+|..+.... ...
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 45689999999999999999999987765 57788888899888888888 67899999995444332 335
Q ss_pred hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE 156 (206)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
.+.++|.+++|+|++.+.+-.... +.... ..+.|+++|.||.|+..... ... + ...+..+++.
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~-----~~~~~----~~~~~~i~v~NK~DL~~~~~----~~~---~-~~~~~~~~i~ 355 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLA-----LIELL----PKKKPIIVVLNKADLVSKIE----LES---E-KLANGDAIIS 355 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHH-----HHHhc----ccCCCEEEEEechhcccccc----cch---h-hccCCCceEE
Confidence 678899999999999863222211 11111 12789999999999987532 111 1 2223356999
Q ss_pred eeccCCCCHHHHHHHHHHHHHhc
Q 028647 157 TSAKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 157 ~S~~~~~~i~~l~~~l~~~~~~~ 179 (206)
+|+++++|++.|.+.|.+.+...
T Consensus 356 iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 356 ISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EEecCccCHHHHHHHHHHHHhhc
Confidence 99999999999999999998776
No 212
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.84 E-value=5.3e-20 Score=132.93 Aligned_cols=150 Identities=21% Similarity=0.168 Sum_probs=96.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC-------------------------------CCCCccceeEEEEEEEeCCeEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSN-------------------------------QYKATIGADFLTKEVQFEDRLFT 58 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 58 (206)
+|+++|++|+|||||+++|+...-.. ......+.+.....+...+ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 58999999999999999997532111 1113333344333343443 56
Q ss_pred EEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc--c
Q 028647 59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR--V 136 (206)
Q Consensus 59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~ 136 (206)
+.+|||||+..+.......++.+|++++|+|++++..-... .... +..... ..++|+|+||+|+.+.... .
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~-~~~~~~-----~~~iIvviNK~D~~~~~~~~~~ 151 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSY-ILSLLG-----IRHVVVAVNKMDLVDYSEEVFE 151 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHH-HHHHcC-----CCcEEEEEEchhcccCCHHHHH
Confidence 78999999988877777778999999999999875321211 1111 111111 2357889999998753211 1
Q ss_pred ccHHHHHHHHHhcC--CCcEEEeeccCCCCHHHH
Q 028647 137 VSEKKARAWCASKG--NIPYFETSAKEGINVEEA 168 (206)
Q Consensus 137 ~~~~~~~~~~~~~~--~~~~~~~S~~~~~~i~~l 168 (206)
...++++++...++ ..+++++||++|.|+.+.
T Consensus 152 ~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 152 EIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 22344555555554 256999999999999854
No 213
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=5e-21 Score=128.31 Aligned_cols=168 Identities=23% Similarity=0.303 Sum_probs=120.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCC---CC--CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKK---FS--NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (206)
+..+.|+++|..++|||||+..+-... +. ....-+++.......+.+.+ ..+.+||.+|++...++|..++..
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCN--APLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeecc--ceeEEEEcCChHHHHHHHHHHHHH
Confidence 456889999999999999998765322 11 11222333444444555554 568999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc--CCCcEEEee
Q 028647 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK--GNIPYFETS 158 (206)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~S 158 (206)
+|++++++|+++++-++.....+..+... ....++|+++.+||.|+.+.........-.. ..... +..++.++|
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~---E~leg~p~L~lankqd~q~~~~~~El~~~~~-~~e~~~~rd~~~~pvS 168 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVEN---EKLEGAPVLVLANKQDLQNAMEAAELDGVFG-LAELIPRRDNPFQPVS 168 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHH---HHhcCCchhhhcchhhhhhhhhHHHHHHHhh-hhhhcCCccCccccch
Confidence 99999999999988877766554444332 2233899999999999987532222111111 12222 246799999
Q ss_pred ccCCCCHHHHHHHHHHHHHhc
Q 028647 159 AKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 159 ~~~~~~i~~l~~~l~~~~~~~ 179 (206)
|.+|+|+++-..|+...+.+.
T Consensus 169 al~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 169 ALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhcccHHHHHHHHHHHHhhc
Confidence 999999999999999998765
No 214
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.84 E-value=2.6e-19 Score=132.18 Aligned_cols=166 Identities=21% Similarity=0.240 Sum_probs=124.8
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh-----hhhc---c
Q 028647 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ-----ERFQ---S 72 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-----~~~~---~ 72 (206)
+|..+.....|+|.|.||+|||||+++++..+......|++|..+....+.... ..++++||||. ++.. .
T Consensus 161 LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~ 238 (346)
T COG1084 161 LPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIER 238 (346)
T ss_pred CCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHH
Confidence 355666778999999999999999999999998888899998888887776666 56789999992 1111 1
Q ss_pred chhhhhcc-CcEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc
Q 028647 73 LGVAFYRG-ADCCVLVYDVNS--MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK 149 (206)
Q Consensus 73 ~~~~~~~~-~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (206)
....++++ .++++|++|++. .-+.+....++.++...+ +.|+++|+||+|+... ...+++......-
T Consensus 239 qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f------~~p~v~V~nK~D~~~~----e~~~~~~~~~~~~ 308 (346)
T COG1084 239 QAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF------KAPIVVVINKIDIADE----EKLEEIEASVLEE 308 (346)
T ss_pred HHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc------CCCeEEEEecccccch----hHHHHHHHHHHhh
Confidence 12223333 789999999985 446666677777776665 5699999999998753 2344445445555
Q ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647 150 GNIPYFETSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 150 ~~~~~~~~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
+......+++..+.+.+.+...+...+.+
T Consensus 309 ~~~~~~~~~~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 309 GGEEPLKISATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred ccccccceeeeehhhHHHHHHHHHHHhhc
Confidence 54667889999999999988888877654
No 215
>CHL00071 tufA elongation factor Tu
Probab=99.83 E-value=1.9e-19 Score=142.04 Aligned_cols=151 Identities=18% Similarity=0.141 Sum_probs=100.9
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (206)
..++.++|+++|++++|||||+++|++... .....++.+.+. ....+.....++.|+||||+
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~--~~~~~~~~~~~~~~iDtPGh 85 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINT--AHVEYETENRHYAHVDCPGH 85 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEc--cEEEEccCCeEEEEEECCCh
Confidence 456789999999999999999999986411 111223333333 33334334457889999999
Q ss_pred hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcc-cccHHHHHHH
Q 028647 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSR-VVSEKKARAW 145 (206)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~~~~~~~~~~ 145 (206)
..+.......+..+|++++|+|+.....-. ....+..+. . . ++| +|+++||+|+.+.... ....+++..+
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~-~---~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~ 157 (409)
T CHL00071 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAK-Q---V---GVPNIVVFLNKEDQVDDEELLELVELEVREL 157 (409)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHH-H---c---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 988888888889999999999998643212 122222221 1 1 678 7789999999764221 1223456666
Q ss_pred HHhcC----CCcEEEeeccCCCC
Q 028647 146 CASKG----NIPYFETSAKEGIN 164 (206)
Q Consensus 146 ~~~~~----~~~~~~~S~~~~~~ 164 (206)
....+ .++++++|+.+|.+
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 158 LSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHhCCCCCcceEEEcchhhccc
Confidence 66544 27899999999874
No 216
>COG2262 HflX GTPases [General function prediction only]
Probab=99.83 E-value=4.1e-19 Score=134.87 Aligned_cols=169 Identities=20% Similarity=0.181 Sum_probs=123.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh---------hhhccchhh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ---------ERFQSLGVA 76 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~---------~~~~~~~~~ 76 (206)
.....|.++|..|+|||||+|.|++........-+.|.+...+.+.+.+. ..+.+.||-|. +.|.+.. .
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g-~~vlLtDTVGFI~~LP~~LV~AFksTL-E 267 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG-RKVLLTDTVGFIRDLPHPLVEAFKSTL-E 267 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC-ceEEEecCccCcccCChHHHHHHHHHH-H
Confidence 45688999999999999999999988877777777788888888888763 45778999992 2333333 3
Q ss_pred hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE 156 (206)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
....+|++++|+|+++|+..+.+......+. ..+...+|+|+|+||+|+..+.. ... ...... ...+.
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~----el~~~~~p~i~v~NKiD~~~~~~------~~~-~~~~~~-~~~v~ 335 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLA----EIGADEIPIILVLNKIDLLEDEE------ILA-ELERGS-PNPVF 335 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHH----HcCCCCCCEEEEEecccccCchh------hhh-hhhhcC-CCeEE
Confidence 3468999999999999966555544433332 22233689999999999876421 111 222222 15899
Q ss_pred eeccCCCCHHHHHHHHHHHHHhcCccccccCC
Q 028647 157 TSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188 (206)
Q Consensus 157 ~S~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~ 188 (206)
+||++|.|++.|++.|...+..........+|
T Consensus 336 iSA~~~~gl~~L~~~i~~~l~~~~~~~~l~lp 367 (411)
T COG2262 336 ISAKTGEGLDLLRERIIELLSGLRTEVTLELP 367 (411)
T ss_pred EEeccCcCHHHHHHHHHHHhhhcccceEEEcC
Confidence 99999999999999999999866555544443
No 217
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.83 E-value=8e-20 Score=132.97 Aligned_cols=149 Identities=17% Similarity=0.184 Sum_probs=94.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCCCCccceeEEEEEEEeCCeEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFS-------------------------------NQYKATIGADFLTKEVQFEDRLFT 58 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 58 (206)
+|+++|+.++|||||+.+|+...-. .......+.+.....+... ...
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~--~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE--KYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC--CeE
Confidence 5899999999999999998632100 1112223333333334444 467
Q ss_pred EEEEeCCChhhhccchhhhhccCcEEEEEEECCChhh------HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS------FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
+.+||+||+..+...+...+..+|++++|+|++++.. .......+. +..... ..|+++++||+|+...
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~iiivvNK~Dl~~~ 152 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTLG-----VKQLIVAVNKMDDVTV 152 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHcC-----CCeEEEEEEccccccc
Confidence 8999999998887777777888999999999987421 011111111 111111 3589999999999742
Q ss_pred C----cccccHHHHHHHHHhcC----CCcEEEeeccCCCCHH
Q 028647 133 N----SRVVSEKKARAWCASKG----NIPYFETSAKEGINVE 166 (206)
Q Consensus 133 ~----~~~~~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~ 166 (206)
. ......+++..+...++ .++++++||.+|+|++
T Consensus 153 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 153 NWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1 01122334443444443 2679999999999987
No 218
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.83 E-value=3e-19 Score=130.98 Aligned_cols=161 Identities=18% Similarity=0.179 Sum_probs=122.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc-------chhhhhc
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-------LGVAFYR 79 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~ 79 (206)
....|.++|.||+|||||++.+...+......+++|..+....+.+++.. ++++-|.||.-+-.. .....++
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHH
Confidence 34678999999999999999999988877788888888888777777764 489999999432221 2223456
Q ss_pred cCcEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647 80 GADCCVLVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE 156 (206)
Q Consensus 80 ~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
.++.++||+|++.+ ..|+.+..+..++..+-. ...+.|.++|+||+|+++. ....+.++...+....+++
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek--~L~~rp~liVaNKiD~~ea-----e~~~l~~L~~~lq~~~V~p 346 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK--GLADRPALIVANKIDLPEA-----EKNLLSSLAKRLQNPHVVP 346 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh--hhccCceEEEEeccCchhH-----HHHHHHHHHHHcCCCcEEE
Confidence 79999999999987 777777666655543322 2227799999999998643 1223567777777567999
Q ss_pred eeccCCCCHHHHHHHHHHH
Q 028647 157 TSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 157 ~S~~~~~~i~~l~~~l~~~ 175 (206)
+||+.++++.++++.|.+.
T Consensus 347 vsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 347 VSAKSGEGLEELLNGLREL 365 (366)
T ss_pred eeeccccchHHHHHHHhhc
Confidence 9999999999999987653
No 219
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=1.9e-18 Score=117.52 Aligned_cols=159 Identities=21% Similarity=0.317 Sum_probs=114.6
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-----CCCc-----cceeEEEEEEEeCCeEEEEEEEeCCChhhhccch
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-----YKAT-----IGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG 74 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 74 (206)
+....+|+|+|+.++||||+++.+........ .... ++.-...-...+++ ...+++++||||.++.-+|
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHH
Confidence 34578999999999999999999988764211 1111 11112222222233 2468899999999999999
Q ss_pred hhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc-CCCc
Q 028647 75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK-GNIP 153 (206)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 153 (206)
....+++.++++++|.+.+..+ .....+. ++.... .+|++|++||.|+... ...++++++...- -..+
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~-f~~~~~-----~ip~vVa~NK~DL~~a----~ppe~i~e~l~~~~~~~~ 154 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEEIID-FLTSRN-----PIPVVVAINKQDLFDA----LPPEKIREALKLELLSVP 154 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHHHHH-HHhhcc-----CCCEEEEeeccccCCC----CCHHHHHHHHHhccCCCc
Confidence 9999999999999999998887 2222222 222221 2899999999999876 3455555555443 2489
Q ss_pred EEEeeccCCCCHHHHHHHHHHH
Q 028647 154 YFETSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 154 ~~~~S~~~~~~i~~l~~~l~~~ 175 (206)
++.+++.++++..+.++.+...
T Consensus 155 vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 155 VIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeeeecccchhHHHHHHHHHhh
Confidence 9999999999999999988876
No 220
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.82 E-value=3.4e-19 Score=129.57 Aligned_cols=157 Identities=18% Similarity=0.185 Sum_probs=99.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--------------ccceeEEEEEE----------------------EeC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKA--------------TIGADFLTKEV----------------------QFE 53 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~--------------~~~~~~~~~~~----------------------~~~ 53 (206)
+|+++|+.++|||||+++|..+.+...... +.+.......+ .+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999987554321110 00000000000 011
Q ss_pred CeEEEEEEEeCCChhhhccchhhhhc--cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 028647 54 DRLFTLQIWDTAGQERFQSLGVAFYR--GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (206)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (206)
.....+.++|+||+..+.......+. .+|++++|+|+..+..-. ...++..+... ++|+++|+||+|+.+
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~~-------~ip~ivvvNK~D~~~ 152 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALAL-------NIPVFVVVTKIDLAP 152 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHHc-------CCCEEEEEECccccC
Confidence 11246889999999888777666554 689999999998654322 22222222211 789999999999876
Q ss_pred CCcccccHHHHHHHHHh-------------------------cCCCcEEEeeccCCCCHHHHHHHHHH
Q 028647 132 GNSRVVSEKKARAWCAS-------------------------KGNIPYFETSAKEGINVEEAFQCIAK 174 (206)
Q Consensus 132 ~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~S~~~~~~i~~l~~~l~~ 174 (206)
........+++.++... ....+++.+|+.+|+|+++|+..|..
T Consensus 153 ~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 153 ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 43333444444444331 11248999999999999999987754
No 221
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.82 E-value=5.4e-19 Score=144.22 Aligned_cols=159 Identities=26% Similarity=0.314 Sum_probs=100.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC----ccceeEEEEEEE--eCCeE-----E-----EEEEEeCCChhhh
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA----TIGADFLTKEVQ--FEDRL-----F-----TLQIWDTAGQERF 70 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~g~~~~ 70 (206)
++..|+++|++++|||||+++|.+......... +.+......... ..+.. . .+.||||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 445799999999999999999987654322222 122211111100 00111 1 2689999999999
Q ss_pred ccchhhhhccCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc-----------
Q 028647 71 QSLGVAFYRGADCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV----------- 136 (206)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----------- 136 (206)
...+...+..+|++++|+|+++ +.+++.+. .+. . .++|+++++||+|+.......
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~-~------~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~ 153 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILK-R------RKTPFVVAANKIDRIPGWKSTEDAPFLESIEK 153 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHH-H------cCCCEEEEEECcCCchhhhhhcCchHHHHHhh
Confidence 8888888889999999999987 44444332 111 1 178999999999986321000
Q ss_pred ---ccHH-------HHHHHHHh--------------cCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647 137 ---VSEK-------KARAWCAS--------------KGNIPYFETSAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 137 ---~~~~-------~~~~~~~~--------------~~~~~~~~~S~~~~~~i~~l~~~l~~~~ 176 (206)
...+ +....... .+.++++++||.+|+|++++++.+....
T Consensus 154 ~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 154 QSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 0000 01011111 1247899999999999999999886533
No 222
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.82 E-value=5.9e-19 Score=129.43 Aligned_cols=115 Identities=19% Similarity=0.169 Sum_probs=79.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC-------------CC---CCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSN-------------QY---KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL 73 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 73 (206)
+|+++|+.|+|||||+++|+...-.. .. +...+.++......+.....++.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 58999999999999999997532110 00 011122222233333334478899999999999888
Q ss_pred hhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
+..+++.+|++++|+|+.+.... ....++..+... ++|+++++||+|+.+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~-------~~P~iivvNK~D~~~a 131 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL-------NIPTIIFVNKIDRAGA 131 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc-------CCCEEEEEECccccCC
Confidence 88999999999999999876442 223333333211 7899999999999754
No 223
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=4.2e-19 Score=139.61 Aligned_cols=149 Identities=16% Similarity=0.142 Sum_probs=99.2
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCC----------------CCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK----------------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (206)
.++.++|+++|+.++|||||+++|++.. .........+.+ .....+.....++.||||||+.
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchH
Confidence 4678999999999999999999997320 011122333333 3444454445678999999999
Q ss_pred hhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCCccc-ccHHHHHHHH
Q 028647 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV-VLGNKIDVDGGNSRV-VSEKKARAWC 146 (206)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~-~~~~~~~~~~ 146 (206)
.|.......+..+|++++|+|+..+...... ..+..+... ++|.+ +++||+|+.+..... ...++++.++
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~~-------gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l 158 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQV-------GVPYIVVFLNKCDMVDDEELLELVEMEVRELL 158 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc-------CCCEEEEEEEecccCCHHHHHHHHHHHHHHHH
Confidence 8887777777889999999999874322221 222222111 66755 689999997642211 1234566666
Q ss_pred HhcCC----CcEEEeeccCCC
Q 028647 147 ASKGN----IPYFETSAKEGI 163 (206)
Q Consensus 147 ~~~~~----~~~~~~S~~~~~ 163 (206)
..++. ++++++|+.+|.
T Consensus 159 ~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 159 SEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HhcCCCccCccEEECcccccc
Confidence 66542 789999999875
No 224
>PRK00049 elongation factor Tu; Reviewed
Probab=99.82 E-value=6.5e-19 Score=138.41 Aligned_cols=163 Identities=17% Similarity=0.153 Sum_probs=106.5
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (206)
..++.++|+++|+.++|||||+++|++... ........+ .......+.....++.++||||+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T--i~~~~~~~~~~~~~i~~iDtPG~ 85 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGIT--INTAHVEYETEKRHYAHVDCPGH 85 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeE--EeeeEEEEcCCCeEEEEEECCCH
Confidence 346789999999999999999999986210 011123333 33334444444467889999999
Q ss_pred hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCCcc-cccHHHHHHH
Q 028647 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV-VLGNKIDVDGGNSR-VVSEKKARAW 145 (206)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~-~~~~~~~~~~ 145 (206)
..+.......+..+|++++|+|+..+.... ....+..+... ++|.+ +++||+|+.+.... ....+++..+
T Consensus 86 ~~f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~~-------g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~ 157 (396)
T PRK00049 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV-------GVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHHc-------CCCEEEEEEeecCCcchHHHHHHHHHHHHHH
Confidence 888888888889999999999998753322 12222222111 67875 68999999753211 1223345555
Q ss_pred HHhcC----CCcEEEeeccCCC----------CHHHHHHHHHHHH
Q 028647 146 CASKG----NIPYFETSAKEGI----------NVEEAFQCIAKNA 176 (206)
Q Consensus 146 ~~~~~----~~~~~~~S~~~~~----------~i~~l~~~l~~~~ 176 (206)
....+ .++++++|+.++. ++..+++.|.+.+
T Consensus 158 l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred HHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 55433 3789999999875 4566776666654
No 225
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.1e-19 Score=123.55 Aligned_cols=164 Identities=27% Similarity=0.568 Sum_probs=139.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
..++++++|..|.||||++.+...+.+...+.++.+..........+-..+.+..|||.|++.+.....-++-+..++++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 48999999999999999999999999999999999998877777665566899999999999999998888889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE 166 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (206)
+||++...+..++..|...+.+.+. ++|+++.+||.|..... .......+....+ ..++++|++.+.|++
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~-----NiPiv~cGNKvDi~~r~----~k~k~v~~~rkkn-l~y~~iSaksn~Nfe 158 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRE-----NIPIVLCGNKVDIKARK----VKAKPVSFHRKKN-LQYYEISAKSNYNFE 158 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhc-----CCCeeeeccceeccccc----cccccceeeeccc-ceeEEeecccccccc
Confidence 9999999999999999999998887 89999999999986532 1112222223333 789999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 028647 167 EAFQCIAKNALKSG 180 (206)
Q Consensus 167 ~l~~~l~~~~~~~~ 180 (206)
.-|-|+.+.+.-..
T Consensus 159 kPFl~LarKl~G~p 172 (216)
T KOG0096|consen 159 RPFLWLARKLTGDP 172 (216)
T ss_pred cchHHHhhhhcCCC
Confidence 99999999885433
No 226
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.6e-20 Score=120.42 Aligned_cols=164 Identities=20% Similarity=0.289 Sum_probs=120.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
..++|+++|-.|+||||+..++.-.... ...|+.+.... .+.+ +.+.+++||..|+......|+.++.+.|++|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve--~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVE--TVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcc--cccc--ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 6789999999999999998777655433 33555554433 3333 44889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE 166 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (206)
|+|.+|.+........ +..++.+.+.++..+++++||.|......+.+....+.--..+...+.++.+||.+|+|++
T Consensus 92 VVDssd~dris~a~~e---l~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld 168 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVE---LYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD 168 (182)
T ss_pred EEeccchhhhhhhHHH---HHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence 9999998765554443 3334455555577889999999987653332222222222222334889999999999999
Q ss_pred HHHHHHHHHHHh
Q 028647 167 EAFQCIAKNALK 178 (206)
Q Consensus 167 ~l~~~l~~~~~~ 178 (206)
..++|+.+.+-.
T Consensus 169 ~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 169 PAMDWLQRPLKS 180 (182)
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 227
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.82 E-value=1.4e-19 Score=117.44 Aligned_cols=167 Identities=23% Similarity=0.329 Sum_probs=121.3
Q ss_pred cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCc
Q 028647 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (206)
Q Consensus 3 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (206)
++....++|+++|-.++|||||+..|.+.... +..++.| +..+.+..++ .+.+.+||.+|+...+..|..++.+.|
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd 87 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVD 87 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCChh-hccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccc
Confidence 34567899999999999999999999876633 3344444 4455555555 378999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG 162 (206)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 162 (206)
++|+|+|.+|..-|+.+..-+-++.. ......+|+.+..||.|+.-+...+.....+.-.......+.+-++|+..+
T Consensus 88 ~lIyVIDS~D~krfeE~~~el~ELle---eeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~ 164 (185)
T KOG0074|consen 88 GLIYVIDSTDEKRFEEISEELVELLE---EEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSL 164 (185)
T ss_pred eEEEEEeCCchHhHHHHHHHHHHHhh---hhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccc
Confidence 99999999988777766554444433 333337899999999998765322222211111112223467899999999
Q ss_pred CCHHHHHHHHHHHH
Q 028647 163 INVEEAFQCIAKNA 176 (206)
Q Consensus 163 ~~i~~l~~~l~~~~ 176 (206)
+|+.+-.+|+....
T Consensus 165 eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 165 EGSTDGSDWVQSNP 178 (185)
T ss_pred cCccCcchhhhcCC
Confidence 99998888876543
No 228
>PLN03126 Elongation factor Tu; Provisional
Probab=99.81 E-value=1.2e-18 Score=138.99 Aligned_cols=151 Identities=18% Similarity=0.128 Sum_probs=100.2
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (206)
..++.++|+++|++++|||||+++|+.... ..+.... .+.......+......+.++|+||+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rG--iTi~~~~~~~~~~~~~i~liDtPGh 154 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARG--ITINTATVEYETENRHYAHVDCPGH 154 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCC--eeEEEEEEEEecCCcEEEEEECCCH
Confidence 457789999999999999999999985211 1122222 3333333333333357889999999
Q ss_pred hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcc-cccHHHHHHH
Q 028647 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSR-VVSEKKARAW 145 (206)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~~~~~~~~~~ 145 (206)
..|.......+..+|++++|+|+.+...... .+.+..+... ++| +++++||+|+.+.... ....+++..+
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~-------gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~ 226 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV-------GVPNMVVFLNKQDQVDDEELLELVELEVREL 226 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCeEEEEEecccccCHHHHHHHHHHHHHHH
Confidence 9998888888899999999999987543222 2222222111 678 7789999999763221 2223355566
Q ss_pred HHhcC----CCcEEEeeccCCCC
Q 028647 146 CASKG----NIPYFETSAKEGIN 164 (206)
Q Consensus 146 ~~~~~----~~~~~~~S~~~~~~ 164 (206)
....+ .++++++|+.++.+
T Consensus 227 l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 227 LSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHhcCCCcCcceEEEEEcccccc
Confidence 55542 47899999988753
No 229
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.81 E-value=8.5e-19 Score=140.78 Aligned_cols=156 Identities=21% Similarity=0.251 Sum_probs=115.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc------cchhhhh--cc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFY--RG 80 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~--~~ 80 (206)
.+|+++|.||+|||||+|+|++.+-...-.|+.|.+.........++ +++++|.||..... ...++++ ..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 56999999999999999999998866666777777666666666664 47899999943332 2233444 34
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (206)
.|+++-|+|+++.+--- .+.-+++.. ++|+++++|++|..+......+.+ ++.+.++ +|++++||+
T Consensus 82 ~D~ivnVvDAtnLeRnL---yltlQLlE~-------g~p~ilaLNm~D~A~~~Gi~ID~~---~L~~~LG-vPVv~tvA~ 147 (653)
T COG0370 82 PDLIVNVVDATNLERNL---YLTLQLLEL-------GIPMILALNMIDEAKKRGIRIDIE---KLSKLLG-VPVVPTVAK 147 (653)
T ss_pred CCEEEEEcccchHHHHH---HHHHHHHHc-------CCCeEEEeccHhhHHhcCCcccHH---HHHHHhC-CCEEEEEee
Confidence 79999999999865322 222223222 889999999999887544444444 4445566 999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC
Q 028647 161 EGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 161 ~~~~i~~l~~~l~~~~~~~~ 180 (206)
+|.|++++++.+.+....+.
T Consensus 148 ~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 148 RGEGLEELKRAIIELAESKT 167 (653)
T ss_pred cCCCHHHHHHHHHHhccccc
Confidence 99999999999988765544
No 230
>PLN03127 Elongation factor Tu; Provisional
Probab=99.81 E-value=1.3e-18 Score=137.96 Aligned_cols=164 Identities=18% Similarity=0.153 Sum_probs=104.7
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcC------C----------CCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNK------K----------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (206)
..++.++|+++|+.++|||||+++|.+. . ...+..++.+.+. ....+.....++.|+||||+
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh 134 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGH 134 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCc
Confidence 3467899999999999999999999621 1 0112223344443 33444444467899999999
Q ss_pred hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcccc-cHHHHHHH
Q 028647 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSRVV-SEKKARAW 145 (206)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~-~~~~~~~~ 145 (206)
..|.......+..+|++++|+|+.....-+. ...+..+.. . ++| +|+++||+|+.+...... ..+++.++
T Consensus 135 ~~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~----~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~ 206 (447)
T PLN03127 135 ADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----V---GVPSLVVFLNKVDVVDDEELLELVEMELREL 206 (447)
T ss_pred cchHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH----c---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHH
Confidence 8888777777788999999999986533221 121221111 1 778 578999999975321111 12234444
Q ss_pred HHhcC----CCcEEEeecc---CCCC-------HHHHHHHHHHHHH
Q 028647 146 CASKG----NIPYFETSAK---EGIN-------VEEAFQCIAKNAL 177 (206)
Q Consensus 146 ~~~~~----~~~~~~~S~~---~~~~-------i~~l~~~l~~~~~ 177 (206)
...++ .++++++|+. +|.| +..|++.|.+.+.
T Consensus 207 l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 207 LSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 44322 3678888875 4555 6777777777654
No 231
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.81 E-value=7.4e-19 Score=127.50 Aligned_cols=149 Identities=23% Similarity=0.222 Sum_probs=94.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------------CCccceeEEEEEEE--e---CCeEEEEEEEeCCCh
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQY-----------------KATIGADFLTKEVQ--F---EDRLFTLQIWDTAGQ 67 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~--~---~~~~~~~~i~D~~g~ 67 (206)
+|+++|+.|+|||||+++|+........ +...+.++...... + ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999864432210 01111222111111 1 355688999999999
Q ss_pred hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------ccc
Q 028647 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------RVV 137 (206)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~ 137 (206)
..+.......+..+|++++|+|+.+..+... ..++..... .+.|+++|+||+|+..... ...
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~-------~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~ 153 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL-------EGLPIVLVINKIDRLILELKLPPNDAYFKLRH 153 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECcccCcccccCCHHHHHHHHHH
Confidence 9888888888999999999999987665432 233332211 1679999999999862110 011
Q ss_pred cHHHHHHHHHhcCC------Cc----EEEeeccCCCCHH
Q 028647 138 SEKKARAWCASKGN------IP----YFETSAKEGINVE 166 (206)
Q Consensus 138 ~~~~~~~~~~~~~~------~~----~~~~S~~~~~~i~ 166 (206)
..+++..++..++. .| +++.|++.+.++.
T Consensus 154 ~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 154 IIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 12233333333321 22 7788999888765
No 232
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.81 E-value=1.1e-18 Score=138.48 Aligned_cols=156 Identities=19% Similarity=0.273 Sum_probs=104.5
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC---------------------------C--CCCCccceeEEEEEEEeCC
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS---------------------------N--QYKATIGADFLTKEVQFED 54 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~---------------------------~--~~~~~~~~~~~~~~~~~~~ 54 (206)
..++.++|+++|+.++|||||+.+|+...-. + ..+...+.+.......+..
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 4577899999999999999999998642110 0 0011122333333344555
Q ss_pred eEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHH-------HHHHHHHHHHhhcCCCCCCCCc-EEEEEeC
Q 028647 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFD-------NLNNWREEFLIQASPSDPDNFP-FVVLGNK 126 (206)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK 126 (206)
....+.++|+||+..|.......+..+|++|+|+|+++. .++ ...+.+... .. . ++| +|+++||
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~-~~-~-----gi~~iIV~vNK 154 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA-FT-L-----GVKQMICCCNK 154 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH-HH-c-----CCCcEEEEEEc
Confidence 557889999999999999999999999999999999863 121 122211111 11 1 665 7889999
Q ss_pred CCCCCCC----cccccHHHHHHHHHhcC----CCcEEEeeccCCCCHHH
Q 028647 127 IDVDGGN----SRVVSEKKARAWCASKG----NIPYFETSAKEGINVEE 167 (206)
Q Consensus 127 ~Dl~~~~----~~~~~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~~ 167 (206)
+|+.... ......++++.++...+ .++++++|+.+|+|+.+
T Consensus 155 mD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 155 MDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred ccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 9986311 11233556667776655 37899999999999853
No 233
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.80 E-value=1.5e-18 Score=137.78 Aligned_cols=155 Identities=18% Similarity=0.227 Sum_probs=101.8
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCC--C-----------------------------CCCCCccceeEEEEEEEe
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF--S-----------------------------NQYKATIGADFLTKEVQF 52 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~ 52 (206)
..++.++|+++|+.++|||||+.+|+...- . .+... +.+.......+
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~r--GiTid~~~~~~ 80 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERER--GITIDIALWKF 80 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhc--CEeEEeeeEEE
Confidence 356789999999999999999999875210 0 11122 22333333344
Q ss_pred CCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhh---H---HHHHHHHHHHHhhcCCCCCCCCc-EEEEEe
Q 028647 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS---F---DNLNNWREEFLIQASPSDPDNFP-FVVLGN 125 (206)
Q Consensus 53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~~p-~ivv~n 125 (206)
......+.|+|+||+..|.......+..+|++++|+|+..+.. + ....+.+.... .+ ++| +|+++|
T Consensus 81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~-~~------gi~~iiv~vN 153 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAF-TL------GVKQMIVCIN 153 (446)
T ss_pred ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHH-Hc------CCCeEEEEEE
Confidence 4455788999999999999998988999999999999986421 0 11111111111 11 666 679999
Q ss_pred CCCCCC--C--CcccccHHHHHHHHHhcC----CCcEEEeeccCCCCHHH
Q 028647 126 KIDVDG--G--NSRVVSEKKARAWCASKG----NIPYFETSAKEGINVEE 167 (206)
Q Consensus 126 K~Dl~~--~--~~~~~~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~~ 167 (206)
|+|... . .......+++..+....+ .++++++|+.+|+|+.+
T Consensus 154 KmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 154 KMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 999542 1 112233445555555443 37899999999999864
No 234
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.80 E-value=6.4e-18 Score=121.07 Aligned_cols=162 Identities=17% Similarity=0.215 Sum_probs=95.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccce---eEEEEEEEeCCeEEEEEEEeCCChhhhccchhh-----hhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA---DFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVA-----FYR 79 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-----~~~ 79 (206)
+++|+++|.+|+|||||+|.|++...........+. +.....+...+ ...+.+||+||.......... .+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 478999999999999999999986543222222111 11111111111 235889999996433222222 256
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc---------ccccHHHHHHHHH---
Q 028647 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS---------RVVSEKKARAWCA--- 147 (206)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---------~~~~~~~~~~~~~--- 147 (206)
.+|+++++.+.. ... .-..++..+... +.|+++|+||+|+..... +....+++++.+.
T Consensus 80 ~~d~~l~v~~~~-~~~--~d~~~~~~l~~~-------~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 149 (197)
T cd04104 80 EYDFFIIISSTR-FSS--NDVKLAKAIQCM-------GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENL 149 (197)
T ss_pred CcCEEEEEeCCC-CCH--HHHHHHHHHHHh-------CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHH
Confidence 789988885432 211 122333433322 579999999999853211 1122223333222
Q ss_pred -h--cCCCcEEEeecc--CCCCHHHHHHHHHHHHHhcC
Q 028647 148 -S--KGNIPYFETSAK--EGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 148 -~--~~~~~~~~~S~~--~~~~i~~l~~~l~~~~~~~~ 180 (206)
. ....+++.+|+. .+.++..+.+.++..+..+.
T Consensus 150 ~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 150 QEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred HHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 1 223578999998 57899999999999987643
No 235
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.79 E-value=6.8e-18 Score=124.42 Aligned_cols=171 Identities=22% Similarity=0.207 Sum_probs=123.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh-------hccchhhhhc
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYR 79 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~ 79 (206)
--.+++++|+|++|||||+++|++........+++|....+..+.+++ .++++.|+||.-+ -.......++
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 347899999999999999999999988888888888888888888888 6788999998321 1244667889
Q ss_pred cCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCC-------------------------------------------
Q 028647 80 GADCCVLVYDVNSMKS-FDNLNNWREEFLIQASPSDP------------------------------------------- 115 (206)
Q Consensus 80 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~------------------------------------------- 115 (206)
+||++++|+|+..... .+.+.+.+...--.+....+
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999986544 44444433331111111100
Q ss_pred ------------------CCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHH-
Q 028647 116 ------------------DNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA- 176 (206)
Q Consensus 116 ------------------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~- 176 (206)
..+|.++|.||.|+.. .+....+.+.. ..+.+||..+.|+++|.+.|.+.+
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-------~e~~~~l~~~~---~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-------LEELERLARKP---NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-------HHHHHHHHhcc---ceEEEecccCCCHHHHHHHHHHhhC
Confidence 0349999999999875 33444444443 589999999999999999999965
Q ss_pred ----HhcCccccccCCc
Q 028647 177 ----LKSGEEEEIYLPD 189 (206)
Q Consensus 177 ----~~~~~~~~~~~~~ 189 (206)
+..++..+.+.++
T Consensus 290 liRVYtK~~g~~pd~~~ 306 (365)
T COG1163 290 LIRVYTKPPGEEPDFDE 306 (365)
T ss_pred eEEEEecCCCCCCCCCC
Confidence 4445555555533
No 236
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=2.3e-18 Score=134.40 Aligned_cols=175 Identities=18% Similarity=0.209 Sum_probs=130.5
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCC---------------CCCCCCccceeEEEEEEEe-CCeEEEEEEEeCCChh
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF---------------SNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQE 68 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~ 68 (206)
.++..|+.|+-+-.-|||||..+|+...- ..+.+.+.|.......+.+ ++..+.+.++|||||-
T Consensus 57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV 136 (650)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence 36678999999999999999999874221 1223344444444444433 3566889999999999
Q ss_pred hhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh
Q 028647 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS 148 (206)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 148 (206)
.|.......+.-|+++++|+|++..-..++...++..+.. +..+|.|+||+|++.++... ...++.++...
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~--------~L~iIpVlNKIDlp~adpe~-V~~q~~~lF~~ 207 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA--------GLAIIPVLNKIDLPSADPER-VENQLFELFDI 207 (650)
T ss_pred cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc--------CCeEEEeeeccCCCCCCHHH-HHHHHHHHhcC
Confidence 9999998889999999999999987666666665555532 77899999999999875333 34445555544
Q ss_pred cCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCccccccCCc
Q 028647 149 KGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPD 189 (206)
Q Consensus 149 ~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~ 189 (206)
.+ .+++.+||++|.|++++++.|++.++..+-..+.++..
T Consensus 208 ~~-~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~plr~ 247 (650)
T KOG0462|consen 208 PP-AEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRDAPLRM 247 (650)
T ss_pred Cc-cceEEEEeccCccHHHHHHHHHhhCCCCCCCCCcchHH
Confidence 44 78999999999999999999999997655555554433
No 237
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.78 E-value=8.1e-18 Score=121.88 Aligned_cols=113 Identities=20% Similarity=0.171 Sum_probs=78.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC----------------CCCCccceeEEEEEEEeC--------CeEEEEEEEeCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSN----------------QYKATIGADFLTKEVQFE--------DRLFTLQIWDTA 65 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~ 65 (206)
+|+++|+.++|||||+.+|+...-.. ......+.........+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 79999999999999999997532110 011111211112222233 346789999999
Q ss_pred ChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (206)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (206)
|+..+.......++.+|++++|+|+..+.+.+.. ..+..... . ++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~---~----~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK---E----RVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH---c----CCCEEEEEECCCcc
Confidence 9999999999999999999999999986554432 22222211 1 67999999999986
No 238
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.78 E-value=5e-18 Score=135.86 Aligned_cols=156 Identities=19% Similarity=0.151 Sum_probs=98.7
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC---------------------------------CCCccceeEEEEEEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ---------------------------------YKATIGADFLTKEVQ 51 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~ 51 (206)
.+..++|+++|++++|||||+++|+...-... .....+.+.....
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~-- 101 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY-- 101 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE--
Confidence 46779999999999999999999975421110 0111222332223
Q ss_pred eCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 028647 52 FEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (206)
Q Consensus 52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (206)
+.....++.|+||||+..+.......+..+|++++|+|+..+..-.....+ .+...+. ..|+++++||+|+.+
T Consensus 102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~lg-----~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLLG-----IKHLVVAVNKMDLVD 174 (474)
T ss_pred eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHhC-----CCceEEEEEeecccc
Confidence 333345788999999988877777778899999999999864321111111 1111111 237899999999975
Q ss_pred CCcc--cccHHHHHHHHHhcC---CCcEEEeeccCCCCHHHHH
Q 028647 132 GNSR--VVSEKKARAWCASKG---NIPYFETSAKEGINVEEAF 169 (206)
Q Consensus 132 ~~~~--~~~~~~~~~~~~~~~---~~~~~~~S~~~~~~i~~l~ 169 (206)
.... ....+++..+....+ ..+++++|+++|+|+.++.
T Consensus 175 ~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 175 YSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred chhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 3211 112223333333332 4789999999999998653
No 239
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.77 E-value=8.1e-18 Score=133.37 Aligned_cols=167 Identities=14% Similarity=0.153 Sum_probs=109.5
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEE---------------EeC------------
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLTKEV---------------QFE------------ 53 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~------------ 53 (206)
.++..++|+++|+...|||||+..|++... ..+.....+.+.-.... ...
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 457789999999999999999999986432 12222222211100000 000
Q ss_pred ----CeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCC
Q 028647 54 ----DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNF-PFVVLGNKI 127 (206)
Q Consensus 54 ----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~ 127 (206)
.....+.|+|+||++.|...+...+..+|++++|+|+..+. ..+. .+.+. +...+ ++ ++++|+||+
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~-i~~~l------gi~~iIVvlNKi 181 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLA-AVEIM------KLKHIIILQNKI 181 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHH-HHHHc------CCCcEEEEEecc
Confidence 00136789999999999988888889999999999998642 2122 12221 11111 33 589999999
Q ss_pred CCCCCCcccccHHHHHHHHHhc--CCCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647 128 DVDGGNSRVVSEKKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
|+.+........+++.++.... ...+++++||.+|.|++.|++.|.+.+..
T Consensus 182 Dlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 182 DLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred cccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 9975432223344444444331 34789999999999999999999976643
No 240
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.77 E-value=1.9e-17 Score=123.53 Aligned_cols=140 Identities=16% Similarity=0.121 Sum_probs=89.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (206)
+|+++|++|+|||||+++|+...-. .......+.+.....+.+.+ .++.++||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 5899999999999999999742110 11122333333333444444 678999999998888
Q ss_pred cchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCC
Q 028647 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGN 151 (206)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
..+...++.+|++++|+|+.+...-.. ...+..+.. . ++|+++++||+|+.+.. .....+++++.......
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~----~---~~p~ivviNK~D~~~a~-~~~~~~~l~~~l~~~~~ 149 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR----Y---NVPRIAFVNKMDRTGAD-FFRVVEQIREKLGANPV 149 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH----c---CCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCce
Confidence 888899999999999999987533222 122222211 1 78999999999987643 22334444444443332
Q ss_pred CcEEEeecc
Q 028647 152 IPYFETSAK 160 (206)
Q Consensus 152 ~~~~~~S~~ 160 (206)
..++++|+.
T Consensus 150 ~~~~Pisa~ 158 (270)
T cd01886 150 PLQLPIGEE 158 (270)
T ss_pred EEEeccccC
Confidence 345666654
No 241
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.76 E-value=1.3e-17 Score=131.46 Aligned_cols=150 Identities=19% Similarity=0.159 Sum_probs=95.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC---------------------------------CCCCCccceeEEEEEEEeCCe
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFS---------------------------------NQYKATIGADFLTKEVQFEDR 55 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~ 55 (206)
++|+++|+.++|||||+.+|+...-. .+.....+.+.....+.. .
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~--~ 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST--D 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc--C
Confidence 48999999999999999998643211 011112223333333333 3
Q ss_pred EEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc
Q 028647 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR 135 (206)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (206)
..++.|+||||+..|.......+..+|++++|+|+..+..-+....+ . +...+. ..++++++||+|+.+....
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~-~~~~~~-----~~~iivviNK~D~~~~~~~ 151 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-Y-IASLLG-----IRHVVLAVNKMDLVDYDEE 151 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-H-HHHHcC-----CCcEEEEEEecccccchHH
Confidence 35788999999999887777888999999999999865332221111 1 111111 2358899999999754211
Q ss_pred --cccHHHHHHHHHhcC--CCcEEEeeccCCCCHHH
Q 028647 136 --VVSEKKARAWCASKG--NIPYFETSAKEGINVEE 167 (206)
Q Consensus 136 --~~~~~~~~~~~~~~~--~~~~~~~S~~~~~~i~~ 167 (206)
....++...+....+ .++++++||.+|+|+++
T Consensus 152 ~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 152 VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 112233333444433 35799999999999886
No 242
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.76 E-value=3.6e-17 Score=121.51 Aligned_cols=168 Identities=16% Similarity=0.099 Sum_probs=113.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh-------ccchhhhhcc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYRG 80 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~ 80 (206)
...|.++|.||+|||||++.+...+......+++|..+..-.+.+.. .-.+.+-|.||..+- .......+..
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 45688999999999999999999887777777777777666666533 235788999993221 1122334567
Q ss_pred CcEEEEEEECCChhh---HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEe
Q 028647 81 ADCCVLVYDVNSMKS---FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 157 (206)
Q Consensus 81 ~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
+.++++|+|++..+- .+.......++..+... ..+.|.+||+||+|+..+ .+...+....+.+.......+++
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~--L~~K~~ivv~NKiD~~~~--~e~~~~~~~~l~~~~~~~~~~~I 313 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPK--LAEKPRIVVLNKIDLPLD--EEELEELKKALAEALGWEVFYLI 313 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHH--hccCceEEEEeccCCCcC--HHHHHHHHHHHHHhcCCCcceee
Confidence 999999999985432 33333333333332211 127899999999997664 33333334444444442333339
Q ss_pred eccCCCCHHHHHHHHHHHHHhcC
Q 028647 158 SAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 158 S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
|+.+++|++++...+.+.+.+..
T Consensus 314 Sa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 314 SALTREGLDELLRALAELLEETK 336 (369)
T ss_pred ehhcccCHHHHHHHHHHHHHHhh
Confidence 99999999999999998887765
No 243
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.76 E-value=7.3e-17 Score=120.31 Aligned_cols=117 Identities=21% Similarity=0.257 Sum_probs=79.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCC---------CC-----------ccceeEEEEEEEeCCeEEEEEEEeCCChh
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQY---------KA-----------TIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~---------~~-----------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (206)
.+|+++|++|+|||||+++|+...-.... .. ..+.++......+......+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 68999999999999999999742111000 00 01223333333444555789999999999
Q ss_pred hhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 028647 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (206)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 133 (206)
.|.......++.+|++++|+|+++..... ...++... .. .++|+++++||+|+.+..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~----~~---~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVC----RL---RGIPIITFINKLDREGRD 139 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHH----Hh---cCCCEEEEEECCccCCCC
Confidence 88887788889999999999998753322 22222222 11 178999999999987653
No 244
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.75 E-value=5.8e-18 Score=117.60 Aligned_cols=130 Identities=21% Similarity=0.274 Sum_probs=81.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEe-CCeEEEEEEEeCCChhhhccchhhh---hccCcEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAF---YRGADCC 84 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~---~~~~d~~ 84 (206)
-.|+++|+.|||||+|+.+|..+.......+. .... ...+ ....-.+.++|+|||.+.+...... ...+.++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 57899999999999999999998655443333 1111 1112 1222357899999999888765554 7889999
Q ss_pred EEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHH
Q 028647 85 VLVYDVNS-MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKAR 143 (206)
Q Consensus 85 i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 143 (206)
|||+|.+. +.......+++..++...... ...+|++|++||.|+..+.......+.++
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~-~~~~piLIacNK~Dl~~A~~~~~Ik~~LE 138 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQ-KNKPPILIACNKQDLFTAKPPKKIKKLLE 138 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCC-TT--EEEEEEE-TTSTT---HHHHHHHHH
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhc-cCCCCEEEEEeCccccccCCHHHHHHHHH
Confidence 99999974 455666677777776665533 23789999999999987644333333333
No 245
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.75 E-value=1.1e-16 Score=121.51 Aligned_cols=163 Identities=17% Similarity=0.140 Sum_probs=100.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEe---------------------CC-eEEEEEEEeCCCh-
Q 028647 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF---------------------ED-RLFTLQIWDTAGQ- 67 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~i~D~~g~- 67 (206)
|+++|.||+|||||+++|++........+.++.++......+ ++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999987754333444443333322221 22 3467999999996
Q ss_pred ---hhhccc---hhhhhccCcEEEEEEECCC---------------h-hhHHHHHHHHHH--------------------
Q 028647 68 ---ERFQSL---GVAFYRGADCCVLVYDVNS---------------M-KSFDNLNNWREE-------------------- 105 (206)
Q Consensus 68 ---~~~~~~---~~~~~~~~d~~i~v~d~~~---------------~-~s~~~~~~~~~~-------------------- 105 (206)
++...+ ....++++|++++|+|+.. | +.++.+..-+..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333 3335899999999999973 1 011111110000
Q ss_pred ---------------------HHhhcCC----C-----------------CCCCCcEEEEEeCCCCCCCCcccccHHHHH
Q 028647 106 ---------------------FLIQASP----S-----------------DPDNFPFVVLGNKIDVDGGNSRVVSEKKAR 143 (206)
Q Consensus 106 ---------------------~~~~~~~----~-----------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 143 (206)
+...+.. . ....+|+++|+||.|+.... ...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~---~~~~--- 234 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAE---NNIS--- 234 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChH---HHHH---
Confidence 0000000 0 01256999999999975431 1111
Q ss_pred HHHHhcCCCcEEEeeccCCCCHHHHHH-HHHHHHHhc
Q 028647 144 AWCASKGNIPYFETSAKEGINVEEAFQ-CIAKNALKS 179 (206)
Q Consensus 144 ~~~~~~~~~~~~~~S~~~~~~i~~l~~-~l~~~~~~~ 179 (206)
.+....+...++.+||+.+.+++++.+ .+.++++..
T Consensus 235 ~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~ 271 (318)
T cd01899 235 KLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD 271 (318)
T ss_pred HHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence 222344457899999999999999998 588888543
No 246
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=6.9e-17 Score=126.56 Aligned_cols=165 Identities=21% Similarity=0.218 Sum_probs=117.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCC-eEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
+++-|+++|+-.-|||||+..+..........-..|-.+.-..+..+. ..-.+.|+|||||+.|..+...-..-+|+++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 456789999999999999999998887766555566555555555542 2236889999999999988877778899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHH--HHHhcC-CCcEEEeeccCC
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARA--WCASKG-NIPYFETSAKEG 162 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~S~~~~ 162 (206)
+|+++++.-.-++.... .... .. ++|++|+.||+|+++.+......+..+. ....++ ...++++||++|
T Consensus 84 LVVa~dDGv~pQTiEAI-~hak----~a---~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg 155 (509)
T COG0532 84 LVVAADDGVMPQTIEAI-NHAK----AA---GVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTG 155 (509)
T ss_pred EEEEccCCcchhHHHHH-HHHH----HC---CCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCC
Confidence 99999985443333221 1111 11 8999999999999876432222221111 112222 367999999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q 028647 163 INVEEAFQCIAKNALKS 179 (206)
Q Consensus 163 ~~i~~l~~~l~~~~~~~ 179 (206)
+|+++|++.++-..-..
T Consensus 156 ~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 156 EGIDELLELILLLAEVL 172 (509)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999988766444
No 247
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.75 E-value=1.1e-16 Score=119.94 Aligned_cols=145 Identities=14% Similarity=0.186 Sum_probs=95.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCC----------CCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc----
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQ----------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---- 72 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---- 72 (206)
-.++|+|+|.+|+|||||+|+|++..+... ..++.+.......+..++..+.+.+|||||......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 368999999999999999999998776533 233444445555666677778999999999322111
Q ss_pred -----------------c----hh-hhhc--cCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 028647 73 -----------------L----GV-AFYR--GADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKI 127 (206)
Q Consensus 73 -----------------~----~~-~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (206)
. .+ ..+. .+|+++++++.+...- ... ...+..+ .. ++|+++|+||+
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l-~~~D~~~lk~l----~~----~v~vi~VinK~ 153 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGL-KPLDIEFMKRL----SK----RVNIIPVIAKA 153 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCC-CHHHHHHHHHH----hc----cCCEEEEEECC
Confidence 0 00 1122 4788999998874211 111 2222222 21 67999999999
Q ss_pred CCCCCCcccccHHHHHHHHHhcCCCcEEEeeccC
Q 028647 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE 161 (206)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 161 (206)
|+..........+.+.+.+..++ ++++......
T Consensus 154 D~l~~~e~~~~k~~i~~~l~~~~-i~~~~~~~~~ 186 (276)
T cd01850 154 DTLTPEELKEFKQRIMEDIEEHN-IKIYKFPEDE 186 (276)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcC-CceECCCCCc
Confidence 99764445556667777777776 8888776644
No 248
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.75 E-value=3.6e-17 Score=135.70 Aligned_cols=155 Identities=20% Similarity=0.175 Sum_probs=97.1
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC---------------------------------CCCccceeEEEEEE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ---------------------------------YKATIGADFLTKEV 50 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~ 50 (206)
..+..++|+++|++++|||||+++|+...-... ...+.+.+.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 345679999999999999999999986332111 01111222222222
Q ss_pred EeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647 51 QFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (206)
Q Consensus 51 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (206)
.. ...++.|+||||+..+.......+..+|++++|+|+..+..-+.... +. +..... ..+++|++||+|+.
T Consensus 100 ~~--~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~-~~~~~~-----~~~iivvvNK~D~~ 170 (632)
T PRK05506 100 AT--PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SF-IASLLG-----IRHVVLAVNKMDLV 170 (632)
T ss_pred cc--CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HH-HHHHhC-----CCeEEEEEEecccc
Confidence 23 33567899999998887777777889999999999976532111111 11 111111 24788999999997
Q ss_pred CCCcc--cccHHHHHHHHHhcC--CCcEEEeeccCCCCHHH
Q 028647 131 GGNSR--VVSEKKARAWCASKG--NIPYFETSAKEGINVEE 167 (206)
Q Consensus 131 ~~~~~--~~~~~~~~~~~~~~~--~~~~~~~S~~~~~~i~~ 167 (206)
+.... ....+++.++...++ ..+++++||.+|.|+.+
T Consensus 171 ~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 171 DYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 53211 112233444444443 35799999999999874
No 249
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=6.9e-17 Score=124.48 Aligned_cols=177 Identities=16% Similarity=0.191 Sum_probs=129.1
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCC---------------CCCCCCccceeEEEEEEEe---CCeEEEEEEEeCC
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF---------------SNQYKATIGADFLTKEVQF---EDRLFTLQIWDTA 65 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~ 65 (206)
+.++..|..++.+-.-|||||..||+...- ....+.+.|.......+.+ ++..+.++++|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 445667889999999999999999875221 1233444555444444444 4577999999999
Q ss_pred ChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHH
Q 028647 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAW 145 (206)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 145 (206)
||=.|.-.....+.-|.++++|+|++..-..+++...+..+.. +.-++-|+||+||+.++. +...+++++.
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~--------~LeIiPViNKIDLP~Adp-ervk~eIe~~ 155 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN--------NLEIIPVLNKIDLPAADP-ERVKQEIEDI 155 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc--------CcEEEEeeecccCCCCCH-HHHHHHHHHH
Confidence 9988888777778889999999999987666667666655532 667899999999998742 2233344433
Q ss_pred HHhcCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCccccccCCcc
Q 028647 146 CASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDT 190 (206)
Q Consensus 146 ~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~ 190 (206)
.- .+....+.+||++|.|++++++.|++.++...-..+.++.+.
T Consensus 156 iG-id~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~pLkAL 199 (603)
T COG0481 156 IG-IDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAPLKAL 199 (603)
T ss_pred hC-CCcchheeEecccCCCHHHHHHHHHhhCCCCCCCCCCcceEE
Confidence 32 233568999999999999999999999987665555555443
No 250
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.73 E-value=1.6e-16 Score=128.42 Aligned_cols=119 Identities=20% Similarity=0.245 Sum_probs=80.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCC--CCC------------------CCCCccceeEEEEEEEeCCeEEEEEEEeCC
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKK--FSN------------------QYKATIGADFLTKEVQFEDRLFTLQIWDTA 65 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~--~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 65 (206)
.+..+|+|+|++++|||||+++|+... ... ..+...+.++......+......+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 456799999999999999999996311 100 000111223333333344444778999999
Q ss_pred ChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
|+..+.......++.+|++|+|+|+++..... ...++... .. .++|+++++||+|+...
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~----~~---~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVC----RL---RDTPIFTFINKLDRDGR 146 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHH----Hh---cCCCEEEEEECCccccc
Confidence 99988888888889999999999998753221 22222222 11 17899999999998653
No 251
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=4.1e-17 Score=118.04 Aligned_cols=165 Identities=15% Similarity=0.240 Sum_probs=112.8
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEE-eCCeEEEEEEEeCCChh-------hhccchhh
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQ-FEDRLFTLQIWDTAGQE-------RFQSLGVA 76 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~-------~~~~~~~~ 76 (206)
...+++|+++|.+|+|||||+|.|+.+...+...-..+.++...... +++ -.+.+||+||-. ++......
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 45789999999999999999999997665544433333333222222 233 357899999933 36677888
Q ss_pred hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-c------------ccccHH---
Q 028647 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN-S------------RVVSEK--- 140 (206)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~------------~~~~~~--- 140 (206)
.+...|.+++++++.++.--. -.+++..+..... +.++++++|.+|..... . ++...+
T Consensus 114 ~l~~~DLvL~l~~~~draL~~-d~~f~~dVi~~~~-----~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~ 187 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGT-DEDFLRDVIILGL-----DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAE 187 (296)
T ss_pred HhhhccEEEEeccCCCccccC-CHHHHHHHHHhcc-----CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHH
Confidence 889999999999999875322 2334444444333 57999999999986542 0 111222
Q ss_pred HHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647 141 KARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 141 ~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~ 179 (206)
.+.++++.. .|++..+.+.+.|++.+...++..++..
T Consensus 188 ~~~~~~q~V--~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 188 ALGRLFQEV--KPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHHHHHhhc--CCeEEeccccCccHHHHHHHHHHhCccc
Confidence 222233332 5788888999999999999999988643
No 252
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.72 E-value=4.7e-17 Score=117.90 Aligned_cols=173 Identities=21% Similarity=0.298 Sum_probs=106.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc-----chhhhhccCcE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----LGVAFYRGADC 83 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~d~ 83 (206)
||+++|+.+|||||+.+.+..+..+ +...-..|.+.....+...+. +.+.+||+||+..+.. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~-~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSF-LPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTS-CEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCC-cEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 7999999999999988877765433 222222334444444433332 5799999999865544 35677899999
Q ss_pred EEEEEECCChhhHHHH---HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHH----HHHhcC--CCcE
Q 028647 84 CVLVYDVNSMKSFDNL---NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARA----WCASKG--NIPY 154 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~--~~~~ 154 (206)
+|+|+|+...+-.+.+ ...+..+..... ++.+.|++.|+|+...+.+....++..+ .+...+ .+.+
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-----~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~ 154 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-----NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITF 154 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHST-----T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEE
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCC-----CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEE
Confidence 9999999854433333 333333433322 8899999999999876544444333333 222222 2667
Q ss_pred EEeeccCCCCHHHHHHHHHHHHHhcCccccccCCc
Q 028647 155 FETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPD 189 (206)
Q Consensus 155 ~~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~ 189 (206)
+.||-.+ +.+-+.+..+++.+....+.-+..+..
T Consensus 155 ~~TSI~D-~Sly~A~S~Ivq~LiP~~~~le~~L~~ 188 (232)
T PF04670_consen 155 FLTSIWD-ESLYEAWSKIVQKLIPNLSTLENLLNN 188 (232)
T ss_dssp EEE-TTS-THHHHHHHHHHHTTSTTHCCCCCCCCH
T ss_pred EeccCcC-cHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 8888877 689999999999888766666555443
No 253
>PRK13351 elongation factor G; Reviewed
Probab=99.72 E-value=1.4e-16 Score=133.48 Aligned_cols=117 Identities=19% Similarity=0.208 Sum_probs=82.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-------------CC-----CCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-------------NQ-----YKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (206)
+...+|+|+|+.|+|||||+++|+...-. .. .....+.......+.+. ...+.+|||||+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~ 83 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--NHRINLIDTPGH 83 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--CEEEEEEECCCc
Confidence 45689999999999999999999853210 00 01111222222233333 468899999999
Q ss_pred hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
..+...+..+++.+|++++|+|+++.........| ..+.. .++|+++++||+|+...
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~-------~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR-------YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh-------cCCCEEEEEECCCCCCC
Confidence 99988899999999999999999987665544333 22211 17899999999998764
No 254
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1.5e-16 Score=121.02 Aligned_cols=157 Identities=19% Similarity=0.294 Sum_probs=103.9
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCCCCCccceeEEEEEEEe
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK-------------------------------FSNQYKATIGADFLTKEVQF 52 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 52 (206)
..++.++++++|+..+|||||+.+|+... .....+. |.+.......+
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERer--GvTi~~~~~~f 80 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERER--GVTIDVAHSKF 80 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhc--ceEEEEEEEEe
Confidence 45678999999999999999999986421 1111222 33344444445
Q ss_pred CCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhh---HHHH-HHHHHHHHhhcCCCCCCCC-cEEEEEeCC
Q 028647 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS---FDNL-NNWREEFLIQASPSDPDNF-PFVVLGNKI 127 (206)
Q Consensus 53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~-~~~~~~~~~~~~~~~~~~~-p~ivv~nK~ 127 (206)
....+.++|+|+||+..|-..+..-+.++|++|+|+|+.+++. +... +..-+.++.... ++ ..||++||+
T Consensus 81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-----Gi~~lIVavNKM 155 (428)
T COG5256 81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-----GIKQLIVAVNKM 155 (428)
T ss_pred ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-----CCceEEEEEEcc
Confidence 5555689999999999999999999999999999999987631 1111 111112222211 33 489999999
Q ss_pred CCCCCCcc--cccHHHHHHHHHhcC----CCcEEEeeccCCCCHHH
Q 028647 128 DVDGGNSR--VVSEKKARAWCASKG----NIPYFETSAKEGINVEE 167 (206)
Q Consensus 128 Dl~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~~ 167 (206)
|..+.+.. +....++..+.+..+ .++|+++|+..|+|+.+
T Consensus 156 D~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 156 DLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred cccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 99875311 122223333444443 36799999999999875
No 255
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.71 E-value=3.7e-17 Score=128.59 Aligned_cols=167 Identities=22% Similarity=0.283 Sum_probs=122.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
...++|+++|..|+||||||-.|+...|.+...+-...-..+ .++....+...++|++..+.........++.+|++.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 456999999999999999999999988875544332221112 333444466889999977666666678889999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHH-HHHHHHHhcCC-CcEEEeeccCC
Q 028647 86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK-KARAWCASKGN-IPYFETSAKEG 162 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~S~~~~ 162 (206)
++++.+++++.+.+. .|+..+...... .-++|+|+|+||.|....... +.+ ...-+..++.. -.+++|||++-
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~--~~~~PVILvGNK~d~~~~~~~--s~e~~~~pim~~f~EiEtciecSA~~~ 160 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGD--YHETPVILVGNKSDNGDNENN--SDEVNTLPIMIAFAEIETCIECSALTL 160 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCC--CccCCEEEEeeccCCcccccc--chhHHHHHHHHHhHHHHHHHhhhhhhh
Confidence 999999999999975 577777655422 127899999999998765332 222 23334444432 25799999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 028647 163 INVEEAFQCIAKNALK 178 (206)
Q Consensus 163 ~~i~~l~~~l~~~~~~ 178 (206)
.++.++|....++++.
T Consensus 161 ~n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 161 ANVSELFYYAQKAVIH 176 (625)
T ss_pred hhhHhhhhhhhheeec
Confidence 9999999999888754
No 256
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.71 E-value=4.7e-16 Score=116.61 Aligned_cols=153 Identities=20% Similarity=0.270 Sum_probs=94.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC------C------------CCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQ------Y------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~------~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (206)
+|+++|++|+|||||+++|+....... . ....+.......+.+.+ ..+.+|||||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 589999999999999999875321100 0 00111122222333443 678899999998888
Q ss_pred cchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCC
Q 028647 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGN 151 (206)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
..+..++..+|++++|+|+++.........| ..+.. .++|.++++||+|+.... ..+...++.+.++
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~-------~~~p~iivvNK~D~~~~~----~~~~~~~l~~~~~- 145 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE-------AGIPRIIFINKMDRERAD----FDKTLAALQEAFG- 145 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH-------cCCCEEEEEECCccCCCC----HHHHHHHHHHHhC-
Confidence 8888899999999999999976544332222 22211 178999999999987642 2233333444444
Q ss_pred CcEEE--eeccCCCCHHHHHHHHHHHHH
Q 028647 152 IPYFE--TSAKEGINVEEAFQCIAKNAL 177 (206)
Q Consensus 152 ~~~~~--~S~~~~~~i~~l~~~l~~~~~ 177 (206)
.+++. +...++.++..+.+.+....+
T Consensus 146 ~~~~~~~ip~~~~~~~~~~vd~~~~~~~ 173 (268)
T cd04170 146 RPVVPLQLPIGEGDDFKGVVDLLTEKAY 173 (268)
T ss_pred CCeEEEEecccCCCceeEEEEcccCEEE
Confidence 33433 345566665555555544443
No 257
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=8.8e-16 Score=120.24 Aligned_cols=162 Identities=23% Similarity=0.229 Sum_probs=112.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
+++.-|.++|+..-|||||+..|.+.........+.|..+--..+.+..+ -.++|.|||||..|..+...-..-+|+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 45678899999999999999999987766544444443333333444433 56899999999999998888888899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHH--HHHhc-CCCcEEEeeccCC
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARA--WCASK-GNIPYFETSAKEG 162 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~S~~~~ 162 (206)
+|+.++|.-.-++.. .|. +.... ++|++|.+||+|.+++.......+.... ....+ +.++++++||.+|
T Consensus 230 LVVAadDGVmpQT~E----aIk-hAk~A---~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g 301 (683)
T KOG1145|consen 230 LVVAADDGVMPQTLE----AIK-HAKSA---NVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTG 301 (683)
T ss_pred EEEEccCCccHhHHH----HHH-HHHhc---CCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccC
Confidence 999999854333321 111 11111 8899999999999876422111111110 11223 3578999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028647 163 INVEEAFQCIAKNA 176 (206)
Q Consensus 163 ~~i~~l~~~l~~~~ 176 (206)
.|++.|.+.++-.+
T Consensus 302 ~nl~~L~eaill~A 315 (683)
T KOG1145|consen 302 ENLDLLEEAILLLA 315 (683)
T ss_pred CChHHHHHHHHHHH
Confidence 99999999887654
No 258
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.70 E-value=8.4e-16 Score=100.93 Aligned_cols=106 Identities=21% Similarity=0.284 Sum_probs=70.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh---------hccchhhhhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVAFYR 79 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~ 79 (206)
+|+|+|.+|+|||||+|.|++.... ....+..+.......+.+.+.. +.++||||... ........+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6899999999999999999986432 2333444444444555666654 46999999321 1112334447
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q 028647 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126 (206)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 126 (206)
.+|++++|+|+.++.. +....++..+. . +.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~---~-----~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK---N-----KKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH---T-----TSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh---c-----CCCEEEEEcC
Confidence 8999999999877422 22333333331 1 7899999998
No 259
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2.2e-16 Score=122.26 Aligned_cols=171 Identities=17% Similarity=0.110 Sum_probs=112.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh-hc--------cchh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQ--------SLGV 75 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~--------~~~~ 75 (206)
+..++|+++|+||+|||||+|.|...... ....+++|.+.....+.+++ +.+.+.||+|.-+ .. ...+
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence 56799999999999999999999988765 56778888888788888777 6788999999543 11 1233
Q ss_pred hhhccCcEEEEEEEC--CChhhHHHHHHHHHHHHhhcCCC--CCCCCcEEEEEeCCCCCCC---CcccccHHHHHHHHHh
Q 028647 76 AFYRGADCCVLVYDV--NSMKSFDNLNNWREEFLIQASPS--DPDNFPFVVLGNKIDVDGG---NSRVVSEKKARAWCAS 148 (206)
Q Consensus 76 ~~~~~~d~~i~v~d~--~~~~s~~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~ 148 (206)
..+..+|++++|+|+ .+-++...+...+...-..+... ...+.|++++.||.|+... ..+........+....
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~ 423 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSV 423 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcc
Confidence 556789999999999 33333333333333322211110 0014689999999999765 1111000000011111
Q ss_pred cCCCcEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647 149 KGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 149 ~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
+ -...++|+++++|++.|.+.+.+.+...-
T Consensus 424 ~--~i~~~vs~~tkeg~~~L~~all~~~~~~~ 453 (531)
T KOG1191|consen 424 F--PIVVEVSCTTKEGCERLSTALLNIVERLV 453 (531)
T ss_pred c--ceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence 1 23456999999999999999998876543
No 260
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.70 E-value=1.2e-16 Score=123.75 Aligned_cols=178 Identities=16% Similarity=0.115 Sum_probs=131.4
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh----hccch--
Q 028647 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLG-- 74 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~-- 74 (206)
||+.+.+...++|+|.|++|||||++.++.......+.++++...++..+.+. ....+++||||.-. -.+..
T Consensus 161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dyk--YlrwQViDTPGILD~plEdrN~IEm 238 (620)
T KOG1490|consen 161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYK--YLRWQVIDTPGILDRPEEDRNIIEM 238 (620)
T ss_pred CCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhh--eeeeeecCCccccCcchhhhhHHHH
Confidence 46667888999999999999999999999988887888888777666555443 36678999999311 11111
Q ss_pred h--hhh-ccCcEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc
Q 028647 75 V--AFY-RGADCCVLVYDVNS--MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK 149 (206)
Q Consensus 75 ~--~~~-~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (206)
. .++ .--.+|+++.|++. +-|.+...++++.+...+. +.|+|+|+||+|+...+......+++.+.....
T Consensus 239 qsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-----NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~ 313 (620)
T KOG1490|consen 239 QIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-----NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDD 313 (620)
T ss_pred HHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-----CCceEEEeecccccCccccCHHHHHHHHHHHhc
Confidence 1 112 22457888999885 4567777778888887776 889999999999987755544454555555555
Q ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHHhcCccccc
Q 028647 150 GNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEI 185 (206)
Q Consensus 150 ~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~ 185 (206)
+.++++.+|+.+.+|+.++.....+.++..+-+.+.
T Consensus 314 ~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Kl 349 (620)
T KOG1490|consen 314 GNVKVVQTSCVQEEGVMDVRTTACEALLAARVEQKL 349 (620)
T ss_pred cCceEEEecccchhceeeHHHHHHHHHHHHHHHHHh
Confidence 668999999999999999888888777766554444
No 261
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.69 E-value=1.5e-16 Score=101.34 Aligned_cols=138 Identities=27% Similarity=0.346 Sum_probs=99.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh----hhhccchhhhhccCcEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----ERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~d~~i 85 (206)
+|+++|+.|+|||||+++|.+.... +..+.. +.+..+ -.+||||. ..+..........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQA-------ve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQA-------VEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccce-------eeccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 6899999999999999999976532 222221 223222 25799994 334444455557899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|-+++++++.-.. .+.... ..|+|-|++|+|++++ ...+..++|...-+.-++|.+|+.++.|+
T Consensus 70 ~v~~and~~s~f~p-----~f~~~~------~k~vIgvVTK~DLaed----~dI~~~~~~L~eaGa~~IF~~s~~d~~gv 134 (148)
T COG4917 70 YVHAANDPESRFPP-----GFLDIG------VKKVIGVVTKADLAED----ADISLVKRWLREAGAEPIFETSAVDNQGV 134 (148)
T ss_pred eeecccCccccCCc-----cccccc------ccceEEEEecccccch----HhHHHHHHHHHHcCCcceEEEeccCcccH
Confidence 99999988652211 111111 4579999999999864 45677888888888889999999999999
Q ss_pred HHHHHHHHHH
Q 028647 166 EEAFQCIAKN 175 (206)
Q Consensus 166 ~~l~~~l~~~ 175 (206)
+++++.|...
T Consensus 135 ~~l~~~L~~~ 144 (148)
T COG4917 135 EELVDYLASL 144 (148)
T ss_pred HHHHHHHHhh
Confidence 9999998753
No 262
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.69 E-value=2.1e-15 Score=108.09 Aligned_cols=163 Identities=13% Similarity=0.099 Sum_probs=98.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc-------cc----hh
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SL----GV 75 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~----~~ 75 (206)
++|+++|.+|+|||||+|.+++....... .+..+.........+.+ ..+.++||||..... .. ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999987644222 22333333344444455 468999999943221 11 11
Q ss_pred hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccc----cHHHHHHHHHhcCC
Q 028647 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV----SEKKARAWCASKGN 151 (206)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~ 151 (206)
....+.|++++|+++.+ .+-+ -...+..+...+...- -.++++|+|+.|......... ....++.+....+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~--~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~- 153 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKV--LDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCG- 153 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHh--HhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhC-
Confidence 22357899999999986 2211 1222333333322110 247899999999765432111 2245555656655
Q ss_pred CcEEEeec-----cCCCCHHHHHHHHHHHHHh
Q 028647 152 IPYFETSA-----KEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 152 ~~~~~~S~-----~~~~~i~~l~~~l~~~~~~ 178 (206)
..++..+. ..+.++++|++.+.+.+.+
T Consensus 154 ~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 154 GRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 44555543 4567899999999888865
No 263
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=3.5e-16 Score=108.87 Aligned_cols=163 Identities=17% Similarity=0.263 Sum_probs=110.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhc---cCc
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR---GAD 82 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~d 82 (206)
.+.-.|+++|+.+||||+|+-.|..+.+.....+ .......+.+.+. .++++|.||+++.+....++++ .+-
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~ak 110 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAK 110 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccce
Confidence 3446799999999999999999988754322221 1222223333332 3789999999999988888887 689
Q ss_pred EEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh-------------
Q 028647 83 CCVLVYDVNS-MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS------------- 148 (206)
Q Consensus 83 ~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~------------- 148 (206)
+++||+|... ......+..++..++..... ...++|+++++||.|+.-+...+...+.++.....
T Consensus 111 aiVFVVDSa~f~k~vrdvaefLydil~~~~~-~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ 189 (238)
T KOG0090|consen 111 AIVFVVDSATFLKNVRDVAEFLYDILLDSRV-KKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISD 189 (238)
T ss_pred eEEEEEeccccchhhHHHHHHHHHHHHhhcc-ccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 9999999863 33445566666666655432 12278999999999997765444333333222110
Q ss_pred --------------------c--CCCcEEEeeccCCCCHHHHHHHHHHH
Q 028647 149 --------------------K--GNIPYFETSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 149 --------------------~--~~~~~~~~S~~~~~~i~~l~~~l~~~ 175 (206)
. ..+.|.++|++++ +++++-+|+.++
T Consensus 190 ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 190 EDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 0 1245888999988 899999998765
No 264
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.68 E-value=1.2e-15 Score=127.69 Aligned_cols=118 Identities=18% Similarity=0.101 Sum_probs=82.6
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCC------------------CCCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSN------------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (206)
.++..+|+|+|++++|||||+++|+...-.. ......+.+.....+.+.+ .++.+|||||
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG 84 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPG 84 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCC
Confidence 3456799999999999999999997421110 0122333334444444544 6789999999
Q ss_pred hhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
+..+.......++.+|++++|+|+.+....+.. ..+..+.. . ++|+++++||+|+...
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~---~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR----Y---EVPRIAFVNKMDKTGA 142 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH----c---CCCEEEEEECCCCCCC
Confidence 988888888899999999999999875443322 22222211 1 7899999999999865
No 265
>PRK09866 hypothetical protein; Provisional
Probab=99.68 E-value=4.9e-15 Score=119.25 Aligned_cols=110 Identities=25% Similarity=0.293 Sum_probs=71.8
Q ss_pred EEEEEeCCChhh-----hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 58 TLQIWDTAGQER-----FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 58 ~~~i~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
++.|+||||... ........+..+|++++|+|+....+... ...+..+.. ... ..|+++|+||+|+...
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk-~~K----~~PVILVVNKIDl~dr 304 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILA-VGQ----SVPLYVLVNKFDQQDR 304 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHh-cCC----CCCEEEEEEcccCCCc
Confidence 478999999543 23344567899999999999987433222 122222221 110 2599999999998643
Q ss_pred CcccccHHHHHHHHHh------cCCCcEEEeeccCCCCHHHHHHHHHHH
Q 028647 133 NSRVVSEKKARAWCAS------KGNIPYFETSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 133 ~~~~~~~~~~~~~~~~------~~~~~~~~~S~~~~~~i~~l~~~l~~~ 175 (206)
. ....+.+..+... .+...++++||+.|.|++++++.|.++
T Consensus 305 e--eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 305 N--SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred c--cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 2 1123444444321 234579999999999999999999874
No 266
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.68 E-value=3.8e-15 Score=116.51 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=57.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEe---------------------C-CeEEEEEEEeCCC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF---------------------E-DRLFTLQIWDTAG 66 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~g 66 (206)
++|+++|.||+|||||+|+|++........+..+.++......+ + .....++++|+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999987765434454444443332221 1 1236789999999
Q ss_pred h----hhhccc---hhhhhccCcEEEEEEECC
Q 028647 67 Q----ERFQSL---GVAFYRGADCCVLVYDVN 91 (206)
Q Consensus 67 ~----~~~~~~---~~~~~~~~d~~i~v~d~~ 91 (206)
. +....+ ....++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3 222222 333478999999999996
No 267
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=4.4e-16 Score=103.96 Aligned_cols=158 Identities=21% Similarity=0.336 Sum_probs=113.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
++.-+++++|-.|+|||||++.|-+++... +.||.- +...++.+.+ ..++-+|.+|+......|..++..+|+++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccc-cCCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 456789999999999999999998877542 233221 1222334444 67889999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHH---HhcC------------
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWC---ASKG------------ 150 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~------------ 150 (206)
+.+|+.+.+-+.....-+..++..-. ....|+++.+||+|.+.+. ++++.+... +...
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~---la~vp~lilgnKId~p~a~----se~~l~~~l~l~~~t~~~~~v~~~~~~~ 165 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDES---LATVPFLILGNKIDIPYAA----SEDELRFHLGLSNFTTGKGKVNLTDSNV 165 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHH---HhcCcceeecccccCCCcc----cHHHHHHHHHHHHHhcccccccccCCCC
Confidence 99999999888877665555543322 1278999999999998763 233322211 1110
Q ss_pred -CCcEEEeeccCCCCHHHHHHHHHHH
Q 028647 151 -NIPYFETSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 151 -~~~~~~~S~~~~~~i~~l~~~l~~~ 175 (206)
-..++.||...+.+.-+.|.|+.+.
T Consensus 166 rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 166 RPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred CeEEEEEEEEEccCccceeeeehhhh
Confidence 1346778888888887777777654
No 268
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=9.2e-16 Score=113.09 Aligned_cols=190 Identities=16% Similarity=0.174 Sum_probs=130.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEE--------------------EEe----CCeEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKE--------------------VQF----EDRLFT 58 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~--------------------~~~----~~~~~~ 58 (206)
++.++|.++|+..-|||||...|.+--.. .......+...-... ... ..-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 67899999999999999999998752211 111111111100000 000 012235
Q ss_pred EEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccccc
Q 028647 59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVS 138 (206)
Q Consensus 59 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 138 (206)
+.|.|.|||+.....+.+-..-.|++++|++++.+.-..+..+-+..+.-+ . -..++++-||+|+...+...+.
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-g-----ik~iiIvQNKIDlV~~E~AlE~ 161 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII-G-----IKNIIIVQNKIDLVSRERALEN 161 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-c-----cceEEEEecccceecHHHHHHH
Confidence 889999999999888888888899999999998643222222222222111 1 2368999999999987666777
Q ss_pred HHHHHHHHHhc--CCCcEEEeeccCCCCHHHHHHHHHHHHHhcCccccccCCcccccCCCCCCCCCC
Q 028647 139 EKKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSG 203 (206)
Q Consensus 139 ~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 203 (206)
.+++++|.+-- .+.+++++||..+.|++-|++.|.+.+.. +..+...++.+-+-.|+...++|
T Consensus 162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt--P~rd~~~~p~m~v~RSFDVNkPG 226 (415)
T COG5257 162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT--PERDLDKPPRMYVARSFDVNKPG 226 (415)
T ss_pred HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC--CccCCCCCceEEEEeecccCCCC
Confidence 78888887643 35899999999999999999999999865 55555667777777777666665
No 269
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.65 E-value=5.1e-15 Score=119.76 Aligned_cols=119 Identities=20% Similarity=0.244 Sum_probs=80.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC--CCCC------------------CCCCccceeEEEEEEEeCCeEEEEEEEeCC
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNK--KFSN------------------QYKATIGADFLTKEVQFEDRLFTLQIWDTA 65 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 65 (206)
.+..+|+|+|++++|||||+++|+.. .... ..+...+.++......++....++.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 45679999999999999999998531 1100 001112333434444455555789999999
Q ss_pred ChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
|+..+.......++.+|++|+|+|+.+... .....++... .. .++|+++++||+|+...
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~-~~------~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVT-RL------RDTPIFTFMNKLDRDIR 147 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHH-Hh------cCCCEEEEEECccccCC
Confidence 998888877788899999999999987422 1122222222 11 17899999999998754
No 270
>PRK12739 elongation factor G; Reviewed
Probab=99.65 E-value=4.9e-15 Score=124.11 Aligned_cols=117 Identities=19% Similarity=0.132 Sum_probs=83.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (206)
....+|+|+|++++|||||+++|+...-. .......+.+.....+.+++ .++.++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCH
Confidence 45689999999999999999999742110 01233344444444555554 67899999999
Q ss_pred hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
..+...+...++.+|++++|+|+......... ..+..+.. . ++|+++++||+|+.+.
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~----~---~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK----Y---GVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH----c---CCCEEEEEECCCCCCC
Confidence 88888888899999999999999875432222 22222211 1 7899999999999865
No 271
>PRK00007 elongation factor G; Reviewed
Probab=99.65 E-value=2.8e-15 Score=125.49 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=82.7
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCC--CC----------------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK--FS----------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (206)
.+...+|+|+|++++|||||+++|+... .. .......+.+.....+.+.+ .++.++||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence 4557899999999999999999997311 10 01233344444444454544 6789999999
Q ss_pred hhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 028647 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (206)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 133 (206)
+..+.......+..+|++++|+|+......+...- +..+... ++|.++++||+|+.+..
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~-~~~~~~~-------~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETV-WRQADKY-------KVPRIAFVNKMDRTGAD 143 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHH-HHHHHHc-------CCCEEEEEECCCCCCCC
Confidence 98887778888899999999999986543333222 2222111 78999999999998653
No 272
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.64 E-value=1.2e-14 Score=107.41 Aligned_cols=170 Identities=21% Similarity=0.296 Sum_probs=122.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEE--EeCCeEEEEEEEeCCChhhhccchhhhhcc---C
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV--QFEDRLFTLQIWDTAGQERFQSLGVAFYRG---A 81 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~---~ 81 (206)
..-+|+|+|..++|||||+.+|.+.. ...+..+..|....+ ...+...++.+|-..|......+....+.. +
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 34589999999999999999999865 445555554543333 333445578888888876666666655543 2
Q ss_pred -cEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCC-------------------------------------------
Q 028647 82 -DCCVLVYDVNSM-KSFDNLNNWREEFLIQASPSDPD------------------------------------------- 116 (206)
Q Consensus 82 -d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~------------------------------------------- 116 (206)
-++|++.|+++| .-++.++.|...+..+......+
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~ 207 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH 207 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence 477889999998 44667778877655544433331
Q ss_pred --------------CCcEEEEEeCCCCCCC---------CcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHH
Q 028647 117 --------------NFPFVVLGNKIDVDGG---------NSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173 (206)
Q Consensus 117 --------------~~p~ivv~nK~Dl~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~ 173 (206)
++|++||++|+|.... +...+....++.||.+++ ...+++|+++..|++-|..+|.
T Consensus 208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~G-aaLiyTSvKE~KNidllyKYiv 286 (473)
T KOG3905|consen 208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYG-AALIYTSVKETKNIDLLYKYIV 286 (473)
T ss_pred cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcC-ceeEEeecccccchHHHHHHHH
Confidence 6799999999998321 123345667778888898 8899999999999999999999
Q ss_pred HHHHhcC
Q 028647 174 KNALKSG 180 (206)
Q Consensus 174 ~~~~~~~ 180 (206)
+..+--.
T Consensus 287 hr~yG~~ 293 (473)
T KOG3905|consen 287 HRSYGFP 293 (473)
T ss_pred HHhcCcc
Confidence 9886443
No 273
>PRK12740 elongation factor G; Reviewed
Probab=99.62 E-value=9.6e-15 Score=122.33 Aligned_cols=109 Identities=20% Similarity=0.240 Sum_probs=75.7
Q ss_pred EcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchh
Q 028647 14 LGDSGVGKTSLMNQYVNKKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV 75 (206)
Q Consensus 14 iG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 75 (206)
+|++++|||||+++|+...-. .....+.+.......+.+.+ +.+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 699999999999999643211 01122333333334444444 6789999999988888888
Q ss_pred hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
..+..+|++++|+|++..........| ..+.. .++|+++|+||+|+...
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~-------~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK-------YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH-------cCCCEEEEEECCCCCCC
Confidence 889999999999999886554433222 22211 17899999999998754
No 274
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=3e-14 Score=106.25 Aligned_cols=187 Identities=22% Similarity=0.220 Sum_probs=117.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC----C---CCCCCccceeEEEEEEEe-------CCeEEEEEEEeCCChhhhcc
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKF----S---NQYKATIGADFLTKEVQF-------EDRLFTLQIWDTAGQERFQS 72 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~----~---~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~g~~~~~~ 72 (206)
..+++.++|+..||||||.++|..-.. . ...+...+.+.--..+.+ .+..+++.++|+||+...-+
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 349999999999999999999874221 1 122222333332222222 45567899999999987766
Q ss_pred chhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHH-HHHHHh---
Q 028647 73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKA-RAWCAS--- 148 (206)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~~~--- 148 (206)
.......-.|..++|+|+.....-+...-+ ++.... ....+||+||+|...+..+.-..++. .+..+.
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcL---iig~~~-----c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~ 157 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECL---IIGELL-----CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLES 157 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhh---hhhhhh-----ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHh
Confidence 666666668999999999864332222211 111111 34578889999876654443333222 222221
Q ss_pred --c-CCCcEEEeeccCC----CCHHHHHHHHHHHHHhcCccccccCCcccccCCCCCCCCCC
Q 028647 149 --K-GNIPYFETSAKEG----INVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSG 203 (206)
Q Consensus 149 --~-~~~~~~~~S~~~~----~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 203 (206)
+ ++.|++++|+..| +++.+|.+.|..++.......+. |=.+.+.+-...|.+|
T Consensus 158 t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~g--pflm~vDHCF~IKGQG 217 (522)
T KOG0461|consen 158 TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEEG--PFLMAVDHCFAIKGQG 217 (522)
T ss_pred cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCCC--CeEEEeeeeEEeccCc
Confidence 2 3489999999999 88999999999988764444333 3344455555555555
No 275
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.60 E-value=1e-14 Score=122.56 Aligned_cols=121 Identities=20% Similarity=0.192 Sum_probs=81.8
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcC---------------CCCCC---CCCccceeEEEEEEEeCCeEEEEEEEeCC
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNK---------------KFSNQ---YKATIGADFLTKEVQFEDRLFTLQIWDTA 65 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 65 (206)
..+...+|+++|+.++|||||+++|+.. .+... ...+.........+.+++..+++.+||||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP 94 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP 94 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence 3456789999999999999999999752 11110 11122222222233456667889999999
Q ss_pred ChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
|+..+.......++.+|++++|+|+......+....| .... .. +.|.++++||+|....
T Consensus 95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~---~~----~~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQAL---KE----NVKPVLFINKVDRLIN 153 (720)
T ss_pred CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHH---Hc----CCCEEEEEEChhcccc
Confidence 9998888888899999999999999874322222111 1111 11 6788999999998754
No 276
>PTZ00258 GTP-binding protein; Provisional
Probab=99.59 E-value=7.9e-14 Score=108.13 Aligned_cols=88 Identities=24% Similarity=0.202 Sum_probs=64.7
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeE---------------EEEEEEeCCChh
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL---------------FTLQIWDTAGQE 68 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~ 68 (206)
+....++|+++|.||+|||||+|.|++........+.+|.++....+.+.+.. .++.++|+||..
T Consensus 17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred cCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 34667899999999999999999999877665556777766666666554322 358999999932
Q ss_pred h-------hccchhhhhccCcEEEEEEECC
Q 028647 69 R-------FQSLGVAFYRGADCCVLVYDVN 91 (206)
Q Consensus 69 ~-------~~~~~~~~~~~~d~~i~v~d~~ 91 (206)
. ........++++|++++|+|+.
T Consensus 97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 2223344568899999999973
No 277
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.57 E-value=8.9e-14 Score=107.34 Aligned_cols=171 Identities=18% Similarity=0.201 Sum_probs=115.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC--C------------CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS--N------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS 72 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 72 (206)
...+|+++-+..-|||||+..|+...-. . ..+...|.++-.+...+....+.+.|+|||||..|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 3468999999999999999999864321 1 1112223344333333444447899999999999999
Q ss_pred chhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC--
Q 028647 73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG-- 150 (206)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-- 150 (206)
.....+.-.|++++++|+.....-++ .-.+..-+. . +.+-|||+||+|.+.+....+..+ ..++...++
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpMPQT-rFVlkKAl~---~----gL~PIVVvNKiDrp~Arp~~Vvd~-vfDLf~~L~A~ 154 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPMPQT-RFVLKKALA---L----GLKPIVVINKIDRPDARPDEVVDE-VFDLFVELGAT 154 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCCCch-hhhHHHHHH---c----CCCcEEEEeCCCCCCCCHHHHHHH-HHHHHHHhCCC
Confidence 99999999999999999987433221 111111111 1 667899999999998865444333 334333332
Q ss_pred ----CCcEEEeeccCCC----------CHHHHHHHHHHHHHhcCcccccc
Q 028647 151 ----NIPYFETSAKEGI----------NVEEAFQCIAKNALKSGEEEEIY 186 (206)
Q Consensus 151 ----~~~~~~~S~~~~~----------~i~~l~~~l~~~~~~~~~~~~~~ 186 (206)
..|+++.|+..|. ++.-||+.|+++++...-..+.+
T Consensus 155 deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~P 204 (603)
T COG1217 155 DEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEP 204 (603)
T ss_pred hhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCC
Confidence 2789999988764 68889999999986655333333
No 278
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.56 E-value=1.4e-13 Score=104.83 Aligned_cols=111 Identities=16% Similarity=0.170 Sum_probs=72.1
Q ss_pred EEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc
Q 028647 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR 135 (206)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (206)
.+.+.|+||+|..... ......+|.++++.+...++...... ..++ .+..++|+||+|+......
T Consensus 148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~---------E~aDIiVVNKaDl~~~~~a 212 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK---KGIM---------ELADLIVINKADGDNKTAA 212 (332)
T ss_pred CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH---hhhh---------hhhheEEeehhcccchhHH
Confidence 3568899999954221 22466799999998755554433322 1122 2344899999999865333
Q ss_pred cccHHHHHHHHHhcC------CCcEEEeeccCCCCHHHHHHHHHHHHHhcCc
Q 028647 136 VVSEKKARAWCASKG------NIPYFETSAKEGINVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 136 ~~~~~~~~~~~~~~~------~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~ 181 (206)
.....++........ ..+++.+|+.++.|++++++.|.++.....+
T Consensus 213 ~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~ 264 (332)
T PRK09435 213 RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTA 264 (332)
T ss_pred HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 333344444433211 1589999999999999999999998764433
No 279
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.56 E-value=4.4e-14 Score=119.05 Aligned_cols=121 Identities=17% Similarity=0.142 Sum_probs=80.0
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CC--------------CCCccceeEEEE--EEEeCCeEEEEEEEeCC
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS--NQ--------------YKATIGADFLTK--EVQFEDRLFTLQIWDTA 65 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~--~~--------------~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~ 65 (206)
..++..+|+++|+.++|||||+.+|+...-. .. .....+...... .+.+.+....+.|+|||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 95 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP 95 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence 3456789999999999999999999753211 00 011111111111 22234456789999999
Q ss_pred ChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
|+..+.......++.+|++++|+|+......+...-|. ..... +.|.++++||+|+...
T Consensus 96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~~-------~~~~iv~iNK~D~~~~ 154 (731)
T PRK07560 96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALRE-------RVKPVLFINKVDRLIK 154 (731)
T ss_pred CccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHHc-------CCCeEEEEECchhhcc
Confidence 99988888888899999999999998753322222222 21111 5688999999998743
No 280
>PRK13768 GTPase; Provisional
Probab=99.56 E-value=6.7e-14 Score=103.79 Aligned_cols=115 Identities=17% Similarity=0.087 Sum_probs=70.9
Q ss_pred EEEEEeCCChhhh---ccchhhhhcc-----CcEEEEEEECCChhhHHHH--HHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 028647 58 TLQIWDTAGQERF---QSLGVAFYRG-----ADCCVLVYDVNSMKSFDNL--NNWREEFLIQASPSDPDNFPFVVLGNKI 127 (206)
Q Consensus 58 ~~~i~D~~g~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (206)
.+.++|+||+.+. ...+..+++. .+++++++|+......... ..++........ ++|+++|+||+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~-----~~~~i~v~nK~ 172 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRL-----GLPQIPVLNKA 172 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHc-----CCCEEEEEEhH
Confidence 4789999997653 3333333322 8999999999754322222 122221111111 78999999999
Q ss_pred CCCCCCcccccHHHHH------------------------HHHHhc-CCCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647 128 DVDGGNSRVVSEKKAR------------------------AWCASK-GNIPYFETSAKEGINVEEAFQCIAKNAL 177 (206)
Q Consensus 128 Dl~~~~~~~~~~~~~~------------------------~~~~~~-~~~~~~~~S~~~~~~i~~l~~~l~~~~~ 177 (206)
|+.............. +..... ...+++++|+.++.|+++++++|.+.+.
T Consensus 173 D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 173 DLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 9986543322211111 111222 2358999999999999999999988773
No 281
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=5.2e-14 Score=108.13 Aligned_cols=182 Identities=20% Similarity=0.120 Sum_probs=125.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
-|+-.|+-.-|||||+..+.+.... .....+++.+.........+. .+.|+|.||++++-..+...+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~--~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG--VMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC--ceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 4788899999999999999875443 445566666666555555554 78999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
|+++++.-..+..... .++..+ +++ .++|+||+|+.+....+...+++..... +...+++.+|+..|+||
T Consensus 80 vV~~deGl~~qtgEhL--~iLdll------gi~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI 150 (447)
T COG3276 80 VVAADEGLMAQTGEHL--LILDLL------GIKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGI 150 (447)
T ss_pred EEeCccCcchhhHHHH--HHHHhc------CCCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCH
Confidence 9999764433333221 222232 444 6999999999875322222233333333 55688999999999999
Q ss_pred HHHHHHHHHHHHhcCccccccCCcccccCCCCCCCCCCc
Q 028647 166 EEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGC 204 (206)
Q Consensus 166 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gc 204 (206)
++|.+.|.+..- ....+...+-.+-+.+.+.-|..||
T Consensus 151 ~~Lk~~l~~L~~--~~e~d~~~~fri~IDraFtVKGvGT 187 (447)
T COG3276 151 EELKNELIDLLE--EIERDEQKPFRIAIDRAFTVKGVGT 187 (447)
T ss_pred HHHHHHHHHhhh--hhhhccCCceEEEEeeEEEeccccE
Confidence 999999999874 2222233333444555555566654
No 282
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.55 E-value=3.3e-13 Score=107.12 Aligned_cols=172 Identities=22% Similarity=0.287 Sum_probs=116.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC--CeEEEEEEEeCCChhhhccchhhhhcc----
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE--DRLFTLQIWDTAGQERFQSLGVAFYRG---- 80 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~---- 80 (206)
..-+|+|+|..++|||||+.+|.+.. ...++.+..|....+.-+ +....+.+|-..|...+..+....+..
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 44689999999999999999987643 345566666654443322 233468899888866666666555543
Q ss_pred CcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCC---------------------------------------------
Q 028647 81 ADCCVLVYDVNSMKS-FDNLNNWREEFLIQASPSD--------------------------------------------- 114 (206)
Q Consensus 81 ~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~--------------------------------------------- 114 (206)
--++|+|+|.+.|.. ++.+..|+..+..+.....
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~ 180 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE 180 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence 247888999999754 3344444433221111100
Q ss_pred -------------CCCCcEEEEEeCCCCCCCC---------cccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHH
Q 028647 115 -------------PDNFPFVVLGNKIDVDGGN---------SRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 172 (206)
Q Consensus 115 -------------~~~~p~ivv~nK~Dl~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l 172 (206)
..++|++||++|+|....- ......+-++.+|..++ +.++++|.+...+++-|+.+|
T Consensus 181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yG-AsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYG-ASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcC-CeEEEeeccccccHHHHHHHH
Confidence 0157999999999975321 12244555777788887 889999999999999999999
Q ss_pred HHHHHhcCcc
Q 028647 173 AKNALKSGEE 182 (206)
Q Consensus 173 ~~~~~~~~~~ 182 (206)
.+.++...-.
T Consensus 260 ~h~l~~~~f~ 269 (472)
T PF05783_consen 260 LHRLYGFPFK 269 (472)
T ss_pred HHHhccCCCC
Confidence 9998776554
No 283
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.54 E-value=2.5e-13 Score=116.33 Aligned_cols=147 Identities=25% Similarity=0.252 Sum_probs=93.9
Q ss_pred CCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCe-----------E-----EEEEEEeCCChhhhccchhhhhccCc
Q 028647 19 VGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR-----------L-----FTLQIWDTAGQERFQSLGVAFYRGAD 82 (206)
Q Consensus 19 ~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (206)
++||||+.++.+.........+.|..+--..+..+.. . -.+.||||||++.+.......+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 3499999999988776544444443333333332210 0 12799999999999877777778899
Q ss_pred EEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc--------------cccHHHHH--
Q 028647 83 CCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR--------------VVSEKKAR-- 143 (206)
Q Consensus 83 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--------------~~~~~~~~-- 143 (206)
++++|+|+++ +.+++.+. .+.. . ++|+++|+||+|+...... +...++..
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~----~---~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~ 620 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQ----Y---KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIK 620 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHH----c---CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHH
Confidence 9999999987 33333322 1111 1 6799999999999643110 00011110
Q ss_pred --HH---HHh--------------cCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647 144 --AW---CAS--------------KGNIPYFETSAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 144 --~~---~~~--------------~~~~~~~~~S~~~~~~i~~l~~~l~~~~ 176 (206)
++ ... .+.++++++||++|+|+++|+.+|....
T Consensus 621 l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 621 LYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 11 011 1347899999999999999999886544
No 284
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.53 E-value=2.5e-14 Score=104.78 Aligned_cols=115 Identities=18% Similarity=0.163 Sum_probs=59.9
Q ss_pred EEEEEeCCChhhhccchhhhh--------ccCcEEEEEEECCChhhHH-HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 028647 58 TLQIWDTAGQERFQSLGVAFY--------RGADCCVLVYDVNSMKSFD-NLNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (206)
Q Consensus 58 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (206)
.+.++|||||.++...+...- ...-++++++|+....+.. .+..++..+...... +.|.+.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~----~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRL----ELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHH----TSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhC----CCCEEEeeeccC
Confidence 478999999987765554333 3456888899986432211 122222222111111 789999999999
Q ss_pred CCCCCc-----c---------------cccHHHHHHHHHhcCCC-cEEEeeccCCCCHHHHHHHHHHHH
Q 028647 129 VDGGNS-----R---------------VVSEKKARAWCASKGNI-PYFETSAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 129 l~~~~~-----~---------------~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~l~~~l~~~~ 176 (206)
+..... + ....+.+.++...++.. +++++|+.+++++++++..+-+.+
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 987310 0 01111222222334445 899999999999999999887654
No 285
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.53 E-value=1.7e-13 Score=102.40 Aligned_cols=152 Identities=20% Similarity=0.196 Sum_probs=102.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC---------------------------------CCCCCCccceeEEEEEEEe
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKF---------------------------------SNQYKATIGADFLTKEVQF 52 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~ 52 (206)
+..++.+-.|+..=||||||.||+.+.- ..+.+.+.+.+...+.+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 5568999999999999999999874211 1122233444444444333
Q ss_pred CCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCC
Q 028647 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDG 131 (206)
Q Consensus 53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~ 131 (206)
...++.+.|||||+.|.+.+-.-...||++|+++|+...-. ++..+ ...+...+ +++ +++..||+||.+
T Consensus 84 --~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl-~QTrR-Hs~I~sLL------GIrhvvvAVNKmDLvd 153 (431)
T COG2895 84 --EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVL-EQTRR-HSFIASLL------GIRHVVVAVNKMDLVD 153 (431)
T ss_pred --ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhH-HHhHH-HHHHHHHh------CCcEEEEEEeeecccc
Confidence 33568899999999999999999999999999999975322 11111 11122111 555 889999999998
Q ss_pred CCcc--cccHHHHHHHHHhcC--CCcEEEeeccCCCCHHH
Q 028647 132 GNSR--VVSEKKARAWCASKG--NIPYFETSAKEGINVEE 167 (206)
Q Consensus 132 ~~~~--~~~~~~~~~~~~~~~--~~~~~~~S~~~~~~i~~ 167 (206)
.... .....+...|+.+++ ...++++||..|+|+-.
T Consensus 154 y~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 154 YSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 6422 223344555666665 35789999999998754
No 286
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.53 E-value=3.1e-14 Score=103.06 Aligned_cols=171 Identities=16% Similarity=0.195 Sum_probs=98.6
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCCccceeEEEEEEEe-------------------------
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK-------FSNQYKATIGADFLTKEVQF------------------------- 52 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~------------------------- 52 (206)
.+.+.-|+|+|..|||||||+++|...- |..+.+|....-++...+++
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 3557889999999999999999986421 11112222111111111110
Q ss_pred ----------------CCeEEEEEEEeCCChhhhcc------chhhhhc--cCcEEEEEEECCC---hhhHHHHHHHHHH
Q 028647 53 ----------------EDRLFTLQIWDTAGQERFQS------LGVAFYR--GADCCVLVYDVNS---MKSFDNLNNWREE 105 (206)
Q Consensus 53 ----------------~~~~~~~~i~D~~g~~~~~~------~~~~~~~--~~d~~i~v~d~~~---~~s~~~~~~~~~~ 105 (206)
....+...++|||||.+... .....+. ..-++++++|... |-+|-.-.-+.-.
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 11224478999999754322 2222222 3457778888654 3333322222222
Q ss_pred HHhhcCCCCCCCCcEEEEEeCCCCCCCCccc---ccHHHHHHHHH--------------------hcCCCcEEEeeccCC
Q 028647 106 FLIQASPSDPDNFPFVVLGNKIDVDGGNSRV---VSEKKARAWCA--------------------SKGNIPYFETSAKEG 162 (206)
Q Consensus 106 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~--------------------~~~~~~~~~~S~~~~ 162 (206)
++.. .+.|+|+|+||+|+....... .+.+..++..+ -+.....+.+|+.+|
T Consensus 176 ilyk------tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG 249 (366)
T KOG1532|consen 176 ILYK------TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTG 249 (366)
T ss_pred HHHh------ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccC
Confidence 2222 278999999999998754322 22222222222 134577999999999
Q ss_pred CCHHHHHHHHHHHHHhcCc
Q 028647 163 INVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 163 ~~i~~l~~~l~~~~~~~~~ 181 (206)
.|++++|..+.+.+-++..
T Consensus 250 ~G~ddf~~av~~~vdEy~~ 268 (366)
T KOG1532|consen 250 EGFDDFFTAVDESVDEYEE 268 (366)
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 9999999998877655433
No 287
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.53 E-value=1.1e-12 Score=93.92 Aligned_cols=159 Identities=18% Similarity=0.190 Sum_probs=112.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh-------ccchhhhhcc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYRG 80 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~ 80 (206)
..+|+++|.|.+|||||+..++.-........+++.+..+..+.+++. .+++.|.||.-+- .+......+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEeec
Confidence 478999999999999999999876655555666777788888888884 5788999993322 3345567788
Q ss_pred CcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCCC-------------------------------------------
Q 028647 81 ADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPD------------------------------------------- 116 (206)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~------------------------------------------- 116 (206)
+|.+++|+|++..+.... +.+-++.+--.++...+.
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 999999999997654332 233333322111111110
Q ss_pred ------------------CCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647 117 ------------------NFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 117 ------------------~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
.++.+.|-||+|. .+.++..+++.+.+ -+.+|+....|++.+++.+.+.+--
T Consensus 220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~-------vs~eevdrlAr~Pn---svViSC~m~lnld~lle~iWe~l~L 289 (364)
T KOG1486|consen 220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ-------VSIEEVDRLARQPN---SVVISCNMKLNLDRLLERIWEELNL 289 (364)
T ss_pred ecCCChHHHHHHHhccceEEEEEEEeeccce-------ecHHHHHHHhcCCC---cEEEEeccccCHHHHHHHHHHHhce
Confidence 1266778888884 45777777776654 4667888999999999999997643
No 288
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.52 E-value=4.7e-13 Score=97.71 Aligned_cols=142 Identities=17% Similarity=0.187 Sum_probs=84.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
.++..|+++|++|+|||||++.+....-........+. + .+ ......++.++|+||.. ......++.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI---NAMIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH---HHHHHHHHhcCEEE
Confidence 45678999999999999999999864221111111111 1 11 11133567899999864 33344568899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEeCCCCCCCCc-ccccHHHHHH-HH-HhcCCCcEEEeeccC
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF-VVLGNKIDVDGGNS-RVVSEKKARA-WC-ASKGNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~-~~~~~~~~~~-~~-~~~~~~~~~~~S~~~ 161 (206)
+++|++....... ...+..+.. . +.|. ++|+||+|+.+... .....+.+++ +. ...++.+++++||++
T Consensus 109 lviDa~~~~~~~~-~~i~~~l~~----~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~ 180 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNILQV----H---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIV 180 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHHHH----c---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeecc
Confidence 9999986443222 122222211 1 5674 55999999975421 1122233333 22 234568999999887
Q ss_pred CC
Q 028647 162 GI 163 (206)
Q Consensus 162 ~~ 163 (206)
.-
T Consensus 181 ~~ 182 (225)
T cd01882 181 HG 182 (225)
T ss_pred CC
Confidence 64
No 289
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.52 E-value=7.3e-13 Score=94.75 Aligned_cols=104 Identities=16% Similarity=0.144 Sum_probs=64.2
Q ss_pred EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc
Q 028647 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV 136 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 136 (206)
....++++.|..-.... ... -+|.++.|+|+.+.++... .+..++ ...-++++||+|+.+.. .
T Consensus 92 ~D~iiIEt~G~~l~~~~-~~~--l~~~~i~vvD~~~~~~~~~--~~~~qi----------~~ad~~~~~k~d~~~~~--~ 154 (199)
T TIGR00101 92 LEMVFIESGGDNLSATF-SPE--LADLTIFVIDVAAGDKIPR--KGGPGI----------TRSDLLVINKIDLAPMV--G 154 (199)
T ss_pred CCEEEEECCCCCccccc-chh--hhCcEEEEEEcchhhhhhh--hhHhHh----------hhccEEEEEhhhccccc--c
Confidence 34567777773211111 111 2688999999987655221 111111 22348999999998531 1
Q ss_pred ccHHHHHHHHHh-cCCCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647 137 VSEKKARAWCAS-KGNIPYFETSAKEGINVEEAFQCIAKNAL 177 (206)
Q Consensus 137 ~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i~~l~~~l~~~~~ 177 (206)
...+...+.... .+..+++++|+++|+|+++++++|.++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 155 ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 223333333333 44589999999999999999999998764
No 290
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.52 E-value=9.3e-13 Score=97.14 Aligned_cols=124 Identities=16% Similarity=0.128 Sum_probs=73.4
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc------cc---
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SL--- 73 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~--- 73 (206)
.....++|+|+|.+|+|||||+|+|++...... .....+..........++ ..+.++||||..... ..
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence 345679999999999999999999998765422 222233333333334444 568999999944331 11
Q ss_pred -hhhhhc--cCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 74 -GVAFYR--GADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 74 -~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
...++. ..|++++|..++... ... -...+..+...+...- -.++++|+||+|....
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i--~~~~ivV~T~~d~~~p 164 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSI--WRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhh--HhCEEEEEeCCccCCC
Confidence 112232 578888887666432 111 1223333332222100 2479999999998654
No 291
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.51 E-value=1.1e-13 Score=117.98 Aligned_cols=119 Identities=16% Similarity=0.175 Sum_probs=81.3
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC----------------CCCCCccceeEEEEEEEe--------------C
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS----------------NQYKATIGADFLTKEVQF--------------E 53 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~--------------~ 53 (206)
..++..+|+|+|+.++|||||+.+|+...-. .......+.......+.+ .
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 4566789999999999999999999753311 011111122211222222 1
Q ss_pred CeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (206)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (206)
+..+.+.++||||+..|.......++.+|++|+|+|+..+.......-| ...... ++|+++++||+|+.
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~~~-------~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGE-------RIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHHHC-------CCCEEEEEECCccc
Confidence 2356789999999999999999999999999999999876443332222 222211 78999999999987
No 292
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.51 E-value=1.2e-12 Score=98.14 Aligned_cols=126 Identities=16% Similarity=0.144 Sum_probs=72.9
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc---hhhh
Q 028647 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL---GVAF 77 (206)
Q Consensus 2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~~~~ 77 (206)
++.+.+.++|+++|.+|+||||++|+|++..... ......+..........++ ..+.++||||....... ....
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ 109 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNI 109 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHH
Confidence 3455678999999999999999999999876432 1122222222222333344 67899999995432111 1112
Q ss_pred h------ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 028647 78 Y------RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (206)
Q Consensus 78 ~------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (206)
+ ...|++++|..++.....+.-...+..+...+...- -.++|||+|+.|...
T Consensus 110 ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~i--w~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 110 IKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDI--WRKSLVVLTHAQFSP 167 (313)
T ss_pred HHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhh--hccEEEEEECCccCC
Confidence 2 258999999665432111111222333333322110 247899999999764
No 293
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=6.1e-13 Score=97.29 Aligned_cols=178 Identities=18% Similarity=0.217 Sum_probs=114.2
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcC----------CCC----CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNK----------KFS----NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (206)
+.++.+||..+|+.+-|||||...++.- .|. .-.+...+.++....+.++-....+...|+||+..
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence 5678999999999999999998887531 111 11122234444444444444445678899999999
Q ss_pred hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCc-ccccHHHHHHHHH
Q 028647 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNS-RVVSEKKARAWCA 147 (206)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~ 147 (206)
|-..+..-..+.|+.|+|+++++...-+.-. .++...+. ++| +++++||+|+.++.+ .+....+.+++..
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrE----HiLlarqv----Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs 159 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTRE----HILLARQV----GVPYIVVFLNKVDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcchh----hhhhhhhc----CCcEEEEEEecccccCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999854323221 12212122 676 788999999987533 3345667888888
Q ss_pred hcC----CCcEEEeeccCCC--------CHHHHHHHHHHHHHhcCccccccCCccccc
Q 028647 148 SKG----NIPYFETSAKEGI--------NVEEAFQCIAKNALKSGEEEEIYLPDTIDV 193 (206)
Q Consensus 148 ~~~----~~~~~~~S~~~~~--------~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 193 (206)
.++ ..|++.-|+..-. .|.+|++.+.+++ +.++.....++.+
T Consensus 160 ~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi----p~Per~~dkPflm 213 (394)
T COG0050 160 EYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI----PTPERDIDKPFLM 213 (394)
T ss_pred HcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC----CCCCCcccccccc
Confidence 875 3567777765311 2455555555544 4444444344333
No 294
>PTZ00416 elongation factor 2; Provisional
Probab=99.50 E-value=1.6e-13 Score=116.87 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=79.4
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCC----------------CCCCCccceeEEEEEEEeC--------CeEEEEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS----------------NQYKATIGADFLTKEVQFE--------DRLFTLQ 60 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 60 (206)
.+...+|+++|+.++|||||+++|+...-. .....+.+.......+.+. +....+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 455679999999999999999999853211 0011111111111222232 2256789
Q ss_pred EEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (206)
Q Consensus 61 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (206)
++||||+..+.......++.+|++|+|+|+..+-..... ..+..+.. . ++|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~----~---~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ----E---RIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH----c---CCCEEEEEEChhhh
Confidence 999999999988889999999999999999875432322 22222221 1 67999999999987
No 295
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.50 E-value=6.8e-13 Score=96.09 Aligned_cols=164 Identities=16% Similarity=0.120 Sum_probs=93.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEeCCeEEEEEEEeCCChhh-------hccchh----
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK--ATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGV---- 75 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~---- 75 (206)
.+|+|+|.+||||||++|.+++........ ...+.........+++ ..+.++||||-.. ......
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 489999999999999999999887654332 2233444445556677 4578999999211 111111
Q ss_pred hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccc-----cHHHHHHHHHhcC
Q 028647 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV-----SEKKARAWCASKG 150 (206)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-----~~~~~~~~~~~~~ 150 (206)
....+.|++++|+.+... +.. -...+..+...+...- -..++||+|..|......... ..+.++++....+
T Consensus 79 ~~~~g~ha~llVi~~~r~-t~~-~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~ 154 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-TEE-DREVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCG 154 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHH-HHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred hccCCCeEEEEEEecCcc-hHH-HHHHHHHHHHHccHHH--HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcC
Confidence 123568999999999832 211 1222223333332210 235899999888665533111 1234566677777
Q ss_pred CCcEEEeecc------CCCCHHHHHHHHHHHHHhc
Q 028647 151 NIPYFETSAK------EGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 151 ~~~~~~~S~~------~~~~i~~l~~~l~~~~~~~ 179 (206)
..++.++.+ ....+.+|++.+-+-+.+.
T Consensus 155 -~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 155 -GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp -TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -CEEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 577777776 3345778888777766554
No 296
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.49 E-value=3e-12 Score=98.35 Aligned_cols=83 Identities=24% Similarity=0.172 Sum_probs=60.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeE---------------EEEEEEeCCChhh----
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL---------------FTLQIWDTAGQER---- 69 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~---- 69 (206)
++|+++|.||+|||||+|+|++........+.+|.++....+.+.+.. .++.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999887544455666666655555554421 2589999999321
Q ss_pred ---hccchhhhhccCcEEEEEEECC
Q 028647 70 ---FQSLGVAFYRGADCCVLVYDVN 91 (206)
Q Consensus 70 ---~~~~~~~~~~~~d~~i~v~d~~ 91 (206)
........++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1223344567899999999984
No 297
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.48 E-value=1.9e-12 Score=102.47 Aligned_cols=163 Identities=19% Similarity=0.308 Sum_probs=119.9
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
..++.+++.|+|+.++|||.+++.|.++.+......+....+....+...+..-.+.+.|.+-. ........- ..||+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 3467899999999999999999999999888766666666666777766676666777777754 222222222 67999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI 163 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (206)
++++||.+++.+++.....+...... . ++|+++|++|+|+.+. .+...-+..+++.+++--+.+.+|.+...
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~-~-----~~Pc~~va~K~dlDe~--~Q~~~iqpde~~~~~~i~~P~~~S~~~~~ 570 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDL-Y-----KIPCLMVATKADLDEV--PQRYSIQPDEFCRQLGLPPPIHISSKTLS 570 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhc-c-----CCceEEEeeccccchh--hhccCCChHHHHHhcCCCCCeeeccCCCC
Confidence 99999999999999887766544332 2 8899999999999876 33333333778888875566777777422
Q ss_pred CHHHHHHHHHHHHH
Q 028647 164 NVEEAFQCIAKNAL 177 (206)
Q Consensus 164 ~i~~l~~~l~~~~~ 177 (206)
. .++|..|...+.
T Consensus 571 s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 571 S-NELFIKLATMAQ 583 (625)
T ss_pred C-chHHHHHHHhhh
Confidence 3 888888887663
No 298
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=2.7e-12 Score=101.61 Aligned_cols=158 Identities=22% Similarity=0.257 Sum_probs=101.8
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCC--------------------CC---------CCCCCccceeEEEEEEEeCCe
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK--------------------FS---------NQYKATIGADFLTKEVQFEDR 55 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~--------------------~~---------~~~~~~~~~~~~~~~~~~~~~ 55 (206)
.+..++++|+|+..+|||||+.+++..- .. ...+...|.+.......++-.
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 3567999999999999999999986410 00 011112233334444445555
Q ss_pred EEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChh---hHHHHHH--HHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK---SFDNLNN--WREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (206)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (206)
...++|+|.||+..|-..+..-+..+|++++|+|++..+ .|+...+ -...+++.+. -..++|++||+|+.
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-----i~qlivaiNKmD~V 328 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-----ISQLIVAINKMDLV 328 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-----cceEEEEeeccccc
Confidence 567899999999999999999999999999999998532 1221111 1112222222 23589999999998
Q ss_pred CCCc--ccccHHHHHHHH-HhcC----CCcEEEeeccCCCCHHH
Q 028647 131 GGNS--RVVSEKKARAWC-ASKG----NIPYFETSAKEGINVEE 167 (206)
Q Consensus 131 ~~~~--~~~~~~~~~~~~-~~~~----~~~~~~~S~~~~~~i~~ 167 (206)
+... .+.....+..|. ...+ .+.|++||+..|+|+-.
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 7532 122233344444 3332 35799999999998654
No 299
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.47 E-value=3.7e-12 Score=97.50 Aligned_cols=125 Identities=13% Similarity=0.131 Sum_probs=83.1
Q ss_pred EEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhh-------HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 028647 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS-------FDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (206)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (206)
.+.+.+||++|+...+..|.+++.+++++++|+|+++.+. ...+..-+..+...+......+.|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 3668999999999999999999999999999999987311 122223233333333333334889999999999
Q ss_pred CCCCC--------------cccccHHHHHHHHHh-----c----CCCcEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647 129 VDGGN--------------SRVVSEKKARAWCAS-----K----GNIPYFETSAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 129 l~~~~--------------~~~~~~~~~~~~~~~-----~----~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
+.... ......+.+..+... . ..+....++|.+..+++.+|+.+.+.++...
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 74321 001233333333221 1 1244577889999999999988888877643
No 300
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.46 E-value=1.1e-11 Score=95.54 Aligned_cols=178 Identities=16% Similarity=0.159 Sum_probs=104.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC----CCC------------CCCCCc---cceeEEE---EEEE---eCCeEEEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNK----KFS------------NQYKAT---IGADFLT---KEVQ---FEDRLFTLQ 60 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~----~~~------------~~~~~~---~~~~~~~---~~~~---~~~~~~~~~ 60 (206)
.-.+.|+|+|+.++|||||+++|.+. ... +...++ +|+++.. ..+. .++....+.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 44688999999999999999999886 222 122222 3333322 2222 245556789
Q ss_pred EEeCCChhhh-------ccc----------------------hhhhhc-cCcEEEEEE-ECC-----ChhhHHHHHHHHH
Q 028647 61 IWDTAGQERF-------QSL----------------------GVAFYR-GADCCVLVY-DVN-----SMKSFDNLNNWRE 104 (206)
Q Consensus 61 i~D~~g~~~~-------~~~----------------------~~~~~~-~~d~~i~v~-d~~-----~~~s~~~~~~~~~ 104 (206)
++||+|-..- ... ++..+. ++++.++|. |.+ ...-.+.-.+++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 9999992110 011 334455 899999998 774 0111222344445
Q ss_pred HHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC--CCHHHHHHHHHHHHHhcCcc
Q 028647 105 EFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG--INVEEAFQCIAKNALKSGEE 182 (206)
Q Consensus 105 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~--~~i~~l~~~l~~~~~~~~~~ 182 (206)
++... ++|+++|+|+.|-... ...+...++...++ ++++.+|+..- +.+..+++.+ +-..|.
T Consensus 175 eLk~~-------~kPfiivlN~~dp~~~----et~~l~~~l~eky~-vpvl~v~c~~l~~~DI~~il~~v----L~EFPv 238 (492)
T TIGR02836 175 ELKEL-------NKPFIILLNSTHPYHP----ETEALRQELEEKYD-VPVLAMDVESMRESDILSVLEEV----LYEFPI 238 (492)
T ss_pred HHHhc-------CCCEEEEEECcCCCCc----hhHHHHHHHHHHhC-CceEEEEHHHcCHHHHHHHHHHH----HhcCCc
Confidence 44433 8899999999993322 23444455666677 88888887753 2344444443 333444
Q ss_pred ccc--cCCcccccCCCCCC
Q 028647 183 EEI--YLPDTIDVGNSSQP 199 (206)
Q Consensus 183 ~~~--~~~~~~~~~~~~~~ 199 (206)
.+. ..|.++.+-...+|
T Consensus 239 ~Ei~~~~P~Wve~L~~~Hw 257 (492)
T TIGR02836 239 LEINIDLPSWVEVLDENHW 257 (492)
T ss_pred eEEEeeCchHHHhcCCCch
Confidence 443 56677666555443
No 301
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.44 E-value=3.3e-12 Score=92.23 Aligned_cols=154 Identities=15% Similarity=0.159 Sum_probs=84.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-------C-----CCCCcc--ceeEEEEEEE------------------eC
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-------N-----QYKATI--GADFLTKEVQ------------------FE 53 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-------~-----~~~~~~--~~~~~~~~~~------------------~~ 53 (206)
.....|+++|+.|+|||||+++++..... . ...... .......... ..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 34688999999999999999998753110 0 000000 0000000000 00
Q ss_pred CeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 028647 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (206)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 133 (206)
.....+.++++.|.-... ..+....+..+.|+|..+.+.. .......+ ..|.++++||+|+.+..
T Consensus 100 ~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~~~~~----------~~a~iiv~NK~Dl~~~~ 164 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKYPGMF----------KEADLIVINKADLAEAV 164 (207)
T ss_pred cCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhhHhHH----------hhCCEEEEEHHHccccc
Confidence 011345677777721000 0111234556677887754321 11111111 55789999999997531
Q ss_pred cccccHHHHHHHHH-hcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647 134 SRVVSEKKARAWCA-SKGNIPYFETSAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 134 ~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~~i~~l~~~l~~~~ 176 (206)
....+...+... ..+..+++.+|++++.|++++++++.++.
T Consensus 165 --~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 165 --GFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred --hhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 111222333222 33458899999999999999999998753
No 302
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.43 E-value=9e-12 Score=96.15 Aligned_cols=121 Identities=14% Similarity=0.155 Sum_probs=82.0
Q ss_pred EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChh----------hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q 028647 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK----------SFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 126 (206)
+.+.+||.+|+...+..|.+++.+++++++|+|+++.+ .+......+..+ +......+.|+++++||
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l---~~~~~~~~~piil~~NK 260 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESI---CNSRWFANTSIILFLNK 260 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHH---HcCccccCCcEEEEEec
Confidence 45789999999999999999999999999999999632 233333333333 33333448999999999
Q ss_pred CCCCCCC-------------cccccHHHHHHHHH-----hcC-----CCcEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647 127 IDVDGGN-------------SRVVSEKKARAWCA-----SKG-----NIPYFETSAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 127 ~Dl~~~~-------------~~~~~~~~~~~~~~-----~~~-----~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
.|+.... ......+.+..+.. ... .+....++|.+..+++.+|+.+.+.+++..
T Consensus 261 ~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 261 IDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred HHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 9984321 00012233333221 111 244577889999999999998888777643
No 303
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.42 E-value=5.2e-12 Score=88.26 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=42.1
Q ss_pred EEEEeCCChh----hhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 028647 59 LQIWDTAGQE----RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127 (206)
Q Consensus 59 ~~i~D~~g~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (206)
+.|+|+||.. .....+..++..+|++++|.+++...+-.....+....... ...+++|.||+
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~-------~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD-------KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT-------CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC-------CCeEEEEEcCC
Confidence 7999999943 23356778889999999999999865544443333333221 34589999984
No 304
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.42 E-value=2.3e-12 Score=99.12 Aligned_cols=166 Identities=14% Similarity=0.152 Sum_probs=82.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc---eeEEEEEEEeCCeEEEEEEEeCCChhhhccchhh-----h
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG---ADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVA-----F 77 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-----~ 77 (206)
..+++|+|+|.+|+|||||||.|.+-.-.......+| ++.....+.... .-.+.+||.||.....-.... -
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 4579999999999999999999975322211111111 111111121111 114789999995332222222 2
Q ss_pred hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC--CC-------CCcccccHHHHHHHHHh
Q 028647 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV--DG-------GNSRVVSEKKARAWCAS 148 (206)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl--~~-------~~~~~~~~~~~~~~~~~ 148 (206)
+...|.+|++.+..=.+ .-..+...+... ++|+++|-+|+|. .+ ...++...+++++-+..
T Consensus 112 ~~~yD~fiii~s~rf~~---ndv~La~~i~~~-------gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~ 181 (376)
T PF05049_consen 112 FYRYDFFIIISSERFTE---NDVQLAKEIQRM-------GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLE 181 (376)
T ss_dssp GGG-SEEEEEESSS--H---HHHHHHHHHHHT-------T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHH
T ss_pred ccccCEEEEEeCCCCch---hhHHHHHHHHHc-------CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHH
Confidence 45689888877654222 222333444433 7899999999995 11 11122233343333322
Q ss_pred ------cCCCcEEEeeccCCC--CHHHHHHHHHHHHHhcCcc
Q 028647 149 ------KGNIPYFETSAKEGI--NVEEAFQCIAKNALKSGEE 182 (206)
Q Consensus 149 ------~~~~~~~~~S~~~~~--~i~~l~~~l~~~~~~~~~~ 182 (206)
....+++-+|+.+-. ++..|.+.|.+.++..+..
T Consensus 182 ~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~ 223 (376)
T PF05049_consen 182 NLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH 223 (376)
T ss_dssp HHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred HHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence 123578999988754 5788999998887665543
No 305
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.41 E-value=5.2e-12 Score=94.78 Aligned_cols=145 Identities=17% Similarity=0.182 Sum_probs=78.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC----------CCccceeEEEEEEEeCCeEEEEEEEeCCChhh-------
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQY----------KATIGADFLTKEVQFEDRLFTLQIWDTAGQER------- 69 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------- 69 (206)
-.++|+|+|.+|+|||||+|.|++....... ..+.........+.-++..+.+.++||||...
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 3689999999999999999999986544321 12222333344455577788999999999110
Q ss_pred -----------hccch---------hhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647 70 -----------FQSLG---------VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (206)
Q Consensus 70 -----------~~~~~---------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 129 (206)
+.... ...=...|+++++++++...--+.-...+..+ .. .+++|-|+.|+|.
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~L----s~----~vNvIPvIaKaD~ 154 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRL----SK----RVNVIPVIAKADT 154 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHH----TT----TSEEEEEESTGGG
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHh----cc----cccEEeEEecccc
Confidence 00000 00013579999999987532111111222222 32 6789999999998
Q ss_pred CCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAK 160 (206)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (206)
....+.....+.+.+-....+ +.++.....
T Consensus 155 lt~~el~~~k~~i~~~l~~~~-I~~f~f~~~ 184 (281)
T PF00735_consen 155 LTPEELQAFKQRIREDLEENN-IKIFDFPED 184 (281)
T ss_dssp S-HHHHHHHHHHHHHHHHHTT---S------
T ss_pred cCHHHHHHHHHHHHHHHHHcC-ceeeccccc
Confidence 765444444555555555555 655554443
No 306
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.41 E-value=1.6e-12 Score=96.02 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=75.1
Q ss_pred hhhccchhhhhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHH
Q 028647 68 ERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWC 146 (206)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (206)
+++..+...+++++|.+++|+|+.++. +++.+.+|+..+.. .++|+++|+||+||.+. .....+....+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-------~~i~~vIV~NK~DL~~~--~~~~~~~~~~~~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-------QNIEPIIVLNKIDLLDD--EDMEKEQLDIYR 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEECcccCCC--HHHHHHHHHHHH
Confidence 556677778899999999999999887 89999898875532 17899999999999754 333334444443
Q ss_pred HhcCCCcEEEeeccCCCCHHHHHHHHHH
Q 028647 147 ASKGNIPYFETSAKEGINVEEAFQCIAK 174 (206)
Q Consensus 147 ~~~~~~~~~~~S~~~~~~i~~l~~~l~~ 174 (206)
..+ .+++++||++|.|++++++.+.+
T Consensus 95 -~~g-~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 -NIG-YQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred -HCC-CeEEEEecCCchhHHHHHhhhcC
Confidence 444 78999999999999999988764
No 307
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.4e-12 Score=105.62 Aligned_cols=168 Identities=22% Similarity=0.239 Sum_probs=106.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcc----ceeEEEEEE--------EeCCe----EEEEEEEeCCChhhhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI----GADFLTKEV--------QFEDR----LFTLQIWDTAGQERFQ 71 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~----~~~~~~~~~--------~~~~~----~~~~~i~D~~g~~~~~ 71 (206)
..-+||+|+..+|||-|+..+.+.++......+. |.++.+..- .-.++ .--+.++||||++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 4568999999999999999998766554333332 223322220 00000 0136789999999999
Q ss_pred cchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc-----------------
Q 028647 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------------- 134 (206)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------------- 134 (206)
.+.......||.+|+|+|+.++-.-+++..+ . +++ .++.|+||++||+|..-.-.
T Consensus 555 nlRsrgsslC~~aIlvvdImhGlepqtiESi-~-lLR------~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHGLEPQTIESI-N-LLR------MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhhccccccceEEEEeehhccCCcchhHHH-H-HHH------hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 9988888899999999999864222222221 1 111 12889999999999753200
Q ss_pred -----ccccHHHHHHHHHh-------c------CCCcEEEeeccCCCCHHHHHHHHHHHHHhcCccc
Q 028647 135 -----RVVSEKKARAWCAS-------K------GNIPYFETSAKEGINVEEAFQCIAKNALKSGEEE 183 (206)
Q Consensus 135 -----~~~~~~~~~~~~~~-------~------~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~~ 183 (206)
.......+.+|..+ | ..+.++++||..|+||-+|+.+|++.........
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k 693 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK 693 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 00111111122211 0 1256899999999999999999998776554443
No 308
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.40 E-value=1.3e-11 Score=93.99 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=65.4
Q ss_pred EEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc
Q 028647 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR 135 (206)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (206)
.+.+.|+||+|.. ......+..+|.++++...... +.+..+...+. ++|.++|+||+|+......
T Consensus 126 g~D~viidT~G~~---~~e~~i~~~aD~i~vv~~~~~~---~el~~~~~~l~---------~~~~ivv~NK~Dl~~~~~~ 190 (300)
T TIGR00750 126 GYDVIIVETVGVG---QSEVDIANMADTFVVVTIPGTG---DDLQGIKAGLM---------EIADIYVVNKADGEGATNV 190 (300)
T ss_pred CCCEEEEeCCCCc---hhhhHHHHhhceEEEEecCCcc---HHHHHHHHHHh---------hhccEEEEEcccccchhHH
Confidence 3567899999843 1122356668888888655433 33333322221 6688999999999865321
Q ss_pred cccHHH----HHHHHHhc-C-CCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647 136 VVSEKK----ARAWCASK-G-NIPYFETSAKEGINVEEAFQCIAKNAL 177 (206)
Q Consensus 136 ~~~~~~----~~~~~~~~-~-~~~~~~~S~~~~~~i~~l~~~l~~~~~ 177 (206)
...... ...+.... + ..+++++|+.++.|++++++++.+..-
T Consensus 191 ~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 191 TIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 110111 11111111 1 146999999999999999999998754
No 309
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.38 E-value=2.6e-12 Score=95.18 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=109.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh---------hhhccchhh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ---------ERFQSLGVA 76 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~---------~~~~~~~~~ 76 (206)
.....|.|+|..|+|||||++.|+.....+...-+.+.+..........+. .+.+.||-|. ..|.. +..
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~A-TLe 253 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQA-TLE 253 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHH-HHH
Confidence 345679999999999999999999777666666666666655555555554 3568899992 22222 334
Q ss_pred hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE 156 (206)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
.+..+|+++.|.|+++|+.-+.....+..+....-...+....++=|-||+|..+.....+ .+ ..+.
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E----------~n---~~v~ 320 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE----------KN---LDVG 320 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc----------cC---Cccc
Confidence 4567999999999999977555555555444332222222234677888999876522111 11 1578
Q ss_pred eeccCCCCHHHHHHHHHHHHHhcC
Q 028647 157 TSAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 157 ~S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
+|+.+|+|++++.+.+-..+....
T Consensus 321 isaltgdgl~el~~a~~~kv~~~t 344 (410)
T KOG0410|consen 321 ISALTGDGLEELLKAEETKVASET 344 (410)
T ss_pred cccccCccHHHHHHHHHHHhhhhh
Confidence 899999999999999888775543
No 310
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=6.4e-12 Score=104.05 Aligned_cols=123 Identities=18% Similarity=0.180 Sum_probs=86.5
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (206)
.+...+|.++|+..+|||||..+++...-. .....+.+.......+.+.+ .+.+.++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 456789999999999999999998642111 11122233333333333443 47899999999
Q ss_pred hhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc
Q 028647 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV 136 (206)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 136 (206)
|-.|.......++-+|++++|+|+...-..+.-.-|.+.. .. ++|.++++||+|....+...
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~-----~~---~vp~i~fiNKmDR~~a~~~~ 147 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD-----KY---GVPRILFVNKMDRLGADFYL 147 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh-----hc---CCCeEEEEECccccccChhh
Confidence 9999999999999999999999998754433332332222 11 88999999999998765433
No 311
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.36 E-value=2e-13 Score=98.98 Aligned_cols=151 Identities=21% Similarity=0.250 Sum_probs=86.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCC------CC-----CC----CCCccc-----------eeEEEEEEEeCC-----
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKK------FS-----NQ----YKATIG-----------ADFLTKEVQFED----- 54 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~------~~-----~~----~~~~~~-----------~~~~~~~~~~~~----- 54 (206)
.+.+.|.|.|+||+|||||++.|...- +. +. ..+..| ...+.+.+-..+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 456899999999999999999986311 00 00 001111 123333332111
Q ss_pred -------------eEEEEEEEeCCC--hhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc
Q 028647 55 -------------RLFTLQIWDTAG--QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP 119 (206)
Q Consensus 55 -------------~~~~~~i~D~~g--~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p 119 (206)
..+.+.|++|.| |.+. ....-+|.+++|..+.-.+..+.+..-+.++ +
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------------a 169 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIMEI------------A 169 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------------
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhhh------------c
Confidence 123467778876 4332 2345699999999988766655544433333 4
Q ss_pred EEEEEeCCCCCCCCcccccHHHHHHHHHhcC------CCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647 120 FVVLGNKIDVDGGNSRVVSEKKARAWCASKG------NIPYFETSAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 120 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~------~~~~~~~S~~~~~~i~~l~~~l~~~~ 176 (206)
-++|+||.|+... .....+++....... ..+++.+||.++.|+++|++.|.++.
T Consensus 170 Di~vVNKaD~~gA---~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 170 DIFVVNKADRPGA---DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp SEEEEE--SHHHH---HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred cEEEEeCCChHHH---HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5999999996543 222333333332211 25899999999999999999998854
No 312
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.36 E-value=1.5e-12 Score=90.14 Aligned_cols=81 Identities=17% Similarity=0.066 Sum_probs=53.2
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHH-HHhcCCCcEEEeecc
Q 028647 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAW-CASKGNIPYFETSAK 160 (206)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~S~~ 160 (206)
+.-++|+|.+..+... .+-...+ ...-++|+||.|+++.... +.+...+- .+..+..+++++|++
T Consensus 119 ~~~v~VidvteGe~~P--~K~gP~i----------~~aDllVInK~DLa~~v~~--dlevm~~da~~~np~~~ii~~n~k 184 (202)
T COG0378 119 HLRVVVIDVTEGEDIP--RKGGPGI----------FKADLLVINKTDLAPYVGA--DLEVMARDAKEVNPEAPIIFTNLK 184 (202)
T ss_pred ceEEEEEECCCCCCCc--ccCCCce----------eEeeEEEEehHHhHHHhCc--cHHHHHHHHHHhCCCCCEEEEeCC
Confidence 3788888888654211 0100111 1145899999999987433 33333332 333466899999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028647 161 EGINVEEAFQCIAKNA 176 (206)
Q Consensus 161 ~~~~i~~l~~~l~~~~ 176 (206)
+|+|++++++++....
T Consensus 185 tg~G~~~~~~~i~~~~ 200 (202)
T COG0378 185 TGEGLDEWLRFIEPQA 200 (202)
T ss_pred CCcCHHHHHHHHHhhc
Confidence 9999999999998764
No 313
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.35 E-value=3.5e-11 Score=88.00 Aligned_cols=68 Identities=13% Similarity=0.048 Sum_probs=42.1
Q ss_pred EEEEEeCCChhh-------------hccchhhhhcc-CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEE
Q 028647 58 TLQIWDTAGQER-------------FQSLGVAFYRG-ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL 123 (206)
Q Consensus 58 ~~~i~D~~g~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv 123 (206)
.+.++|+||-.. ...+...++++ .+++++|+|+...-.-.....+...+.. .+.|+++|
T Consensus 126 ~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~-------~~~rti~V 198 (240)
T smart00053 126 NLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP-------QGERTIGV 198 (240)
T ss_pred ceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH-------cCCcEEEE
Confidence 489999999531 12334556664 4689999988643221222222222221 17799999
Q ss_pred EeCCCCCCC
Q 028647 124 GNKIDVDGG 132 (206)
Q Consensus 124 ~nK~Dl~~~ 132 (206)
+||.|....
T Consensus 199 iTK~D~~~~ 207 (240)
T smart00053 199 ITKLDLMDE 207 (240)
T ss_pred EECCCCCCc
Confidence 999998764
No 314
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=3.4e-11 Score=89.90 Aligned_cols=185 Identities=19% Similarity=0.156 Sum_probs=121.8
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhc----------CCCCC----CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVN----------KKFSN----QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (206)
+++++.||.-+|+..-|||||...++. .+|.+ ..+...+.++....+.++-....+.-.|+||+..
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 568899999999999999999887753 11111 1122345555566666655555667789999999
Q ss_pred hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCC-CcccccHHHHHHHHH
Q 028647 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGG-NSRVVSEKKARAWCA 147 (206)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~ 147 (206)
|-..+..-..+.|+.|+|+.++|...-+.-..++ ...+. +++ ++|.+||.|+.++ +-.+..+.+++++.+
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlL----LArQV----GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLs 201 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGPMPQTREHLL----LARQV----GVKHIVVFINKVDLVDDPEMLELVEMEIRELLS 201 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCCCcchHHHHH----HHHHc----CCceEEEEEecccccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999865433322222 11111 444 8899999999843 334455667888888
Q ss_pred hcC----CCcEEEeecc---CCCCH---HHHHHHHHHHHHhcCccccccCCcccccCCC
Q 028647 148 SKG----NIPYFETSAK---EGINV---EEAFQCIAKNALKSGEEEEIYLPDTIDVGNS 196 (206)
Q Consensus 148 ~~~----~~~~~~~S~~---~~~~i---~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 196 (206)
.++ ..|++.-||. +|.+- .+....|++++-.+.+.++.....++-++..
T Consensus 202 e~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie 260 (449)
T KOG0460|consen 202 EFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIE 260 (449)
T ss_pred HcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCceeehh
Confidence 775 4678876654 44321 1334445555555556666666665555443
No 315
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=8e-12 Score=88.45 Aligned_cols=147 Identities=22% Similarity=0.343 Sum_probs=94.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc-----chhhhhccC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----LGVAFYRGA 81 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~ 81 (206)
.-||+++|.+|||||++=..+...... +...++.+.++......+-|. ..+.+||.+|++.+-. .....+.+.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 358999999999999875444322211 233455555665555555544 5689999999885433 344577899
Q ss_pred cEEEEEEECCChhhHHHH---HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHH----HHHhcCCCcE
Q 028647 82 DCCVLVYDVNSMKSFDNL---NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARA----WCASKGNIPY 154 (206)
Q Consensus 82 d~~i~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~ 154 (206)
+++++|||+...+....+ +..+..+..+.. ...+++.+.|+|+.....+....++... +..... ..+
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-----~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~-~~~ 156 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-----EAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLE-CKC 156 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-----cceEEEEEeechhcccchHHHHHHHHHHHHHHhccccc-ccc
Confidence 999999999876544444 344444444333 5678999999999876555443333332 222233 667
Q ss_pred EEeeccC
Q 028647 155 FETSAKE 161 (206)
Q Consensus 155 ~~~S~~~ 161 (206)
+++|-.+
T Consensus 157 f~TsiwD 163 (295)
T KOG3886|consen 157 FPTSIWD 163 (295)
T ss_pred cccchhh
Confidence 7777665
No 316
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.6e-10 Score=87.85 Aligned_cols=84 Identities=21% Similarity=0.128 Sum_probs=62.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC----------------CeEEEEEEEeCCC-----
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------------DRLFTLQIWDTAG----- 66 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~g----- 66 (206)
.++++++|.||+|||||+|.++.......-.|+.|.++......+. -....+.|+|.+|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 4789999999999999999999877555556666665555444321 1234689999999
Q ss_pred --hhhhccchhhhhccCcEEEEEEECC
Q 028647 67 --QERFQSLGVAFYRGADCCVLVYDVN 91 (206)
Q Consensus 67 --~~~~~~~~~~~~~~~d~~i~v~d~~ 91 (206)
.+...+....-++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 3344555566778999999999976
No 317
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.31 E-value=2.1e-10 Score=87.34 Aligned_cols=135 Identities=13% Similarity=0.183 Sum_probs=92.9
Q ss_pred EEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChh-------hHHHHHHHHHHHHhhcCCCCCCC
Q 028647 45 FLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-------SFDNLNNWREEFLIQASPSDPDN 117 (206)
Q Consensus 45 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~~~~ 117 (206)
+....+.+.+ ..+.+.|.+||..-+..|.+.+.+++++|||+++++-+ ....+.+-+..+...+......+
T Consensus 185 I~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~ 262 (354)
T KOG0082|consen 185 IVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFAN 262 (354)
T ss_pred eeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccccc
Confidence 3334444444 66899999999999999999999999999999998622 22334444555666666666668
Q ss_pred CcEEEEEeCCCCCCCC-------------cccccHHHHHHHHH--------hc-CCCcEEEeeccCCCCHHHHHHHHHHH
Q 028647 118 FPFVVLGNKIDVDGGN-------------SRVVSEKKARAWCA--------SK-GNIPYFETSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 118 ~p~ivv~nK~Dl~~~~-------------~~~~~~~~~~~~~~--------~~-~~~~~~~~S~~~~~~i~~l~~~l~~~ 175 (206)
.++|+.+||.|+-+.. ......+++..+.. .. ..+....+.|.+..+|+.+|+.+.+.
T Consensus 263 tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~ 342 (354)
T KOG0082|consen 263 TSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDT 342 (354)
T ss_pred CcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHH
Confidence 9999999999995421 01123333333321 11 22456778899999999999999998
Q ss_pred HHhcCc
Q 028647 176 ALKSGE 181 (206)
Q Consensus 176 ~~~~~~ 181 (206)
+...+-
T Consensus 343 Ii~~nl 348 (354)
T KOG0082|consen 343 IIQNNL 348 (354)
T ss_pred HHHHHH
Confidence 876543
No 318
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.30 E-value=1.6e-11 Score=91.56 Aligned_cols=57 Identities=16% Similarity=0.083 Sum_probs=41.9
Q ss_pred CCcEEEEEeCCCCCCCCcccccHHHH-HHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHH
Q 028647 117 NFPFVVLGNKIDVDGGNSRVVSEKKA-RAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 117 ~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 175 (206)
..+-++|+||+|+.... ....+.. ..+....+..+++.+|+++|+|++++++||.+.
T Consensus 230 ~~ADIVVLNKiDLl~~~--~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYL--NFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCccc--HHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45679999999997631 1223333 333344567899999999999999999999874
No 319
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.30 E-value=5.4e-11 Score=90.25 Aligned_cols=162 Identities=18% Similarity=0.182 Sum_probs=105.5
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--------------CccceeEEEEEEEeCCeE--------------
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK--------------ATIGADFLTKEVQFEDRL-------------- 56 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~-------------- 56 (206)
.+..+.+.+.|+-+.|||||+..|..++..+... ...+.+.....+-+++..
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 3567999999999999999999987654332221 122233333333333221
Q ss_pred -------EEEEEEeCCChhhhccchhhhh--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 028647 57 -------FTLQIWDTAGQERFQSLGVAFY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127 (206)
Q Consensus 57 -------~~~~i~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (206)
-.+.|.|+.|++.|.+....-+ ...|..++++.+++.-+--.-.. +- +... ...|+++++||+
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEH-Lg-i~~a------~~lPviVvvTK~ 265 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEH-LG-IALA------MELPVIVVVTKI 265 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHh-hh-hhhh------hcCCEEEEEEec
Confidence 2378999999999988765443 45899999999997644222111 11 1111 178999999999
Q ss_pred CCCCCCcccccHHHHHHHHHhcC------------------------CCcEEEeeccCCCCHHHHHHHHHH
Q 028647 128 DVDGGNSRVVSEKKARAWCASKG------------------------NIPYFETSAKEGINVEEAFQCIAK 174 (206)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~S~~~~~~i~~l~~~l~~ 174 (206)
|+.+++......+++..+.+..+ -+|++.+|+.+|+|++-|.+.+..
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 99887655555555555443321 257999999999999865554443
No 320
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.28 E-value=2.7e-10 Score=86.23 Aligned_cols=143 Identities=17% Similarity=0.256 Sum_probs=91.7
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC----------CCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc--
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ----------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-- 72 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-- 72 (206)
+.-.++|+++|+.|+|||||+|.|++...... ..++.........+.-++..+.+.++||||...+..
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs 99 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNS 99 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccc
Confidence 35579999999999999999999987632211 223344455555556677888999999999211100
Q ss_pred ------------chhhhh--------------ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q 028647 73 ------------LGVAFY--------------RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126 (206)
Q Consensus 73 ------------~~~~~~--------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 126 (206)
....++ ...|++++.+.++...- ..+ --+.+..+.. .+.+|-|+.|
T Consensus 100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l-~~~---DIe~Mk~ls~----~vNlIPVI~K 171 (373)
T COG5019 100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGL-KPL---DIEAMKRLSK----RVNLIPVIAK 171 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCC-CHH---HHHHHHHHhc----ccCeeeeeec
Confidence 000111 34799999998774221 111 1112222222 5678989999
Q ss_pred CCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFE 156 (206)
Q Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
+|.....+.....+.+.+....++ ++++.
T Consensus 172 aD~lT~~El~~~K~~I~~~i~~~n-I~vf~ 200 (373)
T COG5019 172 ADTLTDDELAEFKERIREDLEQYN-IPVFD 200 (373)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhC-CceeC
Confidence 998876666677777777777776 77774
No 321
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.28 E-value=7.3e-11 Score=87.00 Aligned_cols=162 Identities=18% Similarity=0.174 Sum_probs=94.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-----------CC----CCCccce-----------eEEEEEEEe-------
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-----------NQ----YKATIGA-----------DFLTKEVQF------- 52 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-----------~~----~~~~~~~-----------~~~~~~~~~------- 52 (206)
-+...|.+.|.||+|||||+..|...-.. +. ..+..|. ..+.+.+.-
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 34578999999999999999998532100 11 0111111 111222111
Q ss_pred -----------CCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEE
Q 028647 53 -----------EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV 121 (206)
Q Consensus 53 -----------~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i 121 (206)
+...+.+.|++|.|.-... .....-+|.++++.-..-.+..+.+..-+.+ +--+
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimE------------iaDi 193 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIME------------IADI 193 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhh------------hhhe
Confidence 1122346788887732111 2234568999998877766665555443332 3459
Q ss_pred EEEeCCCCCCCCcccccHHHHHHHHH-----hcCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCcc
Q 028647 122 VLGNKIDVDGGNSRVVSEKKARAWCA-----SKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182 (206)
Q Consensus 122 vv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~ 182 (206)
+|+||.|................+.. .....+++.+||.+|+|++++++.+.++.-.....
T Consensus 194 ~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~s 259 (323)
T COG1703 194 IVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTES 259 (323)
T ss_pred eeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 99999996554211111222222221 11136899999999999999999999877544433
No 322
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.27 E-value=2.2e-10 Score=93.27 Aligned_cols=122 Identities=18% Similarity=0.123 Sum_probs=71.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc----------cch
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----------SLG 74 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~~~ 74 (206)
...++|+|+|.+|+||||++|+|++.... .......++.........++ ..+.++||||..... ...
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 34579999999999999999999987643 22221222222222233444 568999999944321 111
Q ss_pred hhhhc--cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 028647 75 VAFYR--GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (206)
Q Consensus 75 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (206)
..++. ..|++|+|..++.......-..++..+...+...- -.-+|||+|..|..+
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lp 250 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCC
Confidence 22333 47999999987632221111233344433333211 135899999999875
No 323
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2.1e-10 Score=88.38 Aligned_cols=118 Identities=19% Similarity=0.268 Sum_probs=81.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc--CCC--------------CC----CCCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVN--KKF--------------SN----QYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~--~~~--------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (206)
+....+||-+|.+|||||..+|+- +.. .. ..+..-|.++....+.++-....+.+.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 346789999999999999999752 100 00 0111234555555555555557789999999
Q ss_pred hhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
|+.|...+-..+.-+|.+++|+|+...-.-.+. ++ +..+. .+++|++=.+||.|....
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-KL----feVcr---lR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-KL----FEVCR---LRDIPIFTFINKLDREGR 148 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHHH-HH----HHHHh---hcCCceEEEeeccccccC
Confidence 999988877777889999999999975432322 22 22222 228999999999998653
No 324
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.25 E-value=4.2e-11 Score=94.38 Aligned_cols=171 Identities=26% Similarity=0.440 Sum_probs=131.4
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
.-+.+++.|+|..++|||+|+++++.+.|.....+.-+ .+..++.+++....+.+.|.+|.. ...|....|++
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdav 99 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAV 99 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc-----hhhhhhhccce
Confidence 35679999999999999999999999888765444432 235666677777778888888732 22355679999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN 164 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (206)
||||...+..+++.+..+...+..... ...+|.++++++.-......+.....+..+++.......++++.+.+|.+
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~---r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGln 176 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRN---ISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLN 176 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhcccccc---cccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhh
Confidence 999999999999998877776654444 22678888888866665555777777777777776668899999999999
Q ss_pred HHHHHHHHHHHHHhcCccccc
Q 028647 165 VEEAFQCIAKNALKSGEEEEI 185 (206)
Q Consensus 165 i~~l~~~l~~~~~~~~~~~~~ 185 (206)
+..+|..+...+....++...
T Consensus 177 v~rvf~~~~~k~i~~~~~qq~ 197 (749)
T KOG0705|consen 177 VERVFQEVAQKIVQLRKYQQL 197 (749)
T ss_pred HHHHHHHHHHHHHHHHhhhhc
Confidence 999999999887766544433
No 325
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=9.6e-12 Score=91.63 Aligned_cols=189 Identities=16% Similarity=0.223 Sum_probs=124.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCccceeE--EEEE---------------------------EE-
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK---FSNQYKATIGADF--LTKE---------------------------VQ- 51 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~~~--~~~~---------------------------~~- 51 (206)
++..++|.-+|+..-||||++..+.+-. |....+...+... .... ..
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 4667999999999999999998875421 1111111111100 0000 00
Q ss_pred --eCCe---EEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCC----hhhHHHHHHHHHHHHhhcCCCCCCCCcEEE
Q 028647 52 --FEDR---LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----MKSFDNLNNWREEFLIQASPSDPDNFPFVV 122 (206)
Q Consensus 52 --~~~~---~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~p~iv 122 (206)
..++ ...+.|.|+||++-....+..-..-.|++++++..+. |.+.+.+.. -+++. -..+++
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~--------Lkhiii 184 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMK--------LKHIII 184 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhh--------hceEEE
Confidence 0110 1247899999999888877777777899999998774 333332221 12221 236899
Q ss_pred EEeCCCCCCCCcccccHHHHHHHHHhc--CCCcEEEeeccCCCCHHHHHHHHHHHHHhcCccccccCCcccccCCCCCCC
Q 028647 123 LGNKIDVDGGNSRVVSEKKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPR 200 (206)
Q Consensus 123 v~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (206)
+-||+|+...+...+..++++.|...- .+.|++++||.-..|++-+.++|.+.++. |..+-..++..-+-.++...
T Consensus 185 lQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv--PvRdf~s~prlIVIRSFDVN 262 (466)
T KOG0466|consen 185 LQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV--PVRDFTSPPRLIVIRSFDVN 262 (466)
T ss_pred EechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC--CccccCCCCcEEEEEeeccC
Confidence 999999998766667777888887653 35899999999999999999999998854 33333445555556667777
Q ss_pred CCCcc
Q 028647 201 SSGCE 205 (206)
Q Consensus 201 ~~gc~ 205 (206)
++||+
T Consensus 263 kPG~e 267 (466)
T KOG0466|consen 263 KPGSE 267 (466)
T ss_pred CCCch
Confidence 77774
No 326
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.23 E-value=1.9e-10 Score=76.01 Aligned_cols=114 Identities=30% Similarity=0.383 Sum_probs=76.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (206)
++|+++|..|+|||+|+.++....+...+. ++.+ +........+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999997776653332 2222 222223456778999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE 166 (206)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (206)
++.....+++.+ |...+..... .+.|.++++||.|+.+. .....+... .++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k----~dl~~~~~~nk~dl~~~--~~~~~~~~~---------~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNK----SDLPILVGGNRDVLEEE--RQVATEEGL---------EFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCC----CCCcEEEEeechhhHhh--CcCCHHHHH---------HHHHHhCCCcchhh
Confidence 999999888755 6555543221 26789999999998543 222232222 24566778888774
No 327
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.22 E-value=3.7e-11 Score=89.53 Aligned_cols=81 Identities=20% Similarity=0.153 Sum_probs=59.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeE---------------EEEEEEeCCChhh------
Q 028647 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL---------------FTLQIWDTAGQER------ 69 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~------ 69 (206)
|+++|.||+|||||+|+|++........+++|.++....+.+.+.. .++.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5899999999999999999987765556676666666666555432 2589999999321
Q ss_pred -hccchhhhhccCcEEEEEEECC
Q 028647 70 -FQSLGVAFYRGADCCVLVYDVN 91 (206)
Q Consensus 70 -~~~~~~~~~~~~d~~i~v~d~~ 91 (206)
........++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1222334567899999999873
No 328
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.20 E-value=9.4e-10 Score=78.63 Aligned_cols=158 Identities=16% Similarity=0.220 Sum_probs=90.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCC---------CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh-------
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN---------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER------- 69 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------- 69 (206)
.-.|+|+|+|.+|.|||||+|.|+...... ....++........+.-++...+++++||||...
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 346999999999999999999987543321 1111222223333344466677899999999111
Q ss_pred -----------hccch--------hhhh--ccCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 028647 70 -----------FQSLG--------VAFY--RGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKI 127 (206)
Q Consensus 70 -----------~~~~~--------~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (206)
+.... +..+ ...|++++.+.++.. ++..+ ..++..+ .. -+.++-|+.|+
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrL----t~----vvNvvPVIaka 194 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRL----TE----VVNVVPVIAKA 194 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHH----hh----hheeeeeEeec
Confidence 11111 1111 247889999887752 22222 1222222 21 34678888999
Q ss_pred CCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHH
Q 028647 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173 (206)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~ 173 (206)
|...-+++....+.+++-....+ +.+++--+.+-+.=+..++.-+
T Consensus 195 DtlTleEr~~FkqrI~~el~~~~-i~vYPq~~fded~ed~~lN~kv 239 (336)
T KOG1547|consen 195 DTLTLEERSAFKQRIRKELEKHG-IDVYPQDSFDEDLEDKTLNDKV 239 (336)
T ss_pred ccccHHHHHHHHHHHHHHHHhcC-cccccccccccchhHHHHHHHH
Confidence 97655556666666666666665 6666655555443334444333
No 329
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1e-09 Score=83.62 Aligned_cols=148 Identities=20% Similarity=0.297 Sum_probs=91.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCC---------CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh-------
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN---------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER------- 69 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------- 69 (206)
.-.|+++++|+.|.|||||+|.|+...... ....+.........+.-++..+.++++||||-..
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 446999999999999999999988764332 1222333444444455567778899999999111
Q ss_pred -----------hcc-------chhhhhc--cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647 70 -----------FQS-------LGVAFYR--GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (206)
Q Consensus 70 -----------~~~-------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 129 (206)
+.. ..+..+. ..|++++.+.++...- ..+ -..++..+.. .+.+|-|+.|+|.
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL-~p~---Di~~Mk~l~~----~vNiIPVI~KaD~ 170 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGL-KPL---DIEFMKKLSK----KVNLIPVIAKADT 170 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCC-cHh---hHHHHHHHhc----cccccceeecccc
Confidence 110 1111122 5899999999875311 111 1112222222 6788989999998
Q ss_pred CCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEG 162 (206)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 162 (206)
....+.....+.+.+-+...+ ++++.......
T Consensus 171 lT~~El~~~K~~I~~~i~~~n-I~vf~fp~~~~ 202 (366)
T KOG2655|consen 171 LTKDELNQFKKRIRQDIEEHN-IKVFDFPTDES 202 (366)
T ss_pred CCHHHHHHHHHHHHHHHHHcC-cceecCCCCcc
Confidence 876555566666666666665 66666555544
No 330
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2e-10 Score=92.50 Aligned_cols=121 Identities=22% Similarity=0.252 Sum_probs=85.0
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------------CCccceeEEEEEE---EeCCeEEEEEE
Q 028647 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-----------------KATIGADFLTKEV---QFEDRLFTLQI 61 (206)
Q Consensus 2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~---~~~~~~~~~~i 61 (206)
++......+++++|+-+.|||+|+..|..+.-+... +.+.+......++ ...++.+-+++
T Consensus 122 ~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni 201 (971)
T KOG0468|consen 122 MDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI 201 (971)
T ss_pred ccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence 344566799999999999999999998764322111 1111111111111 23566778999
Q ss_pred EeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (206)
Q Consensus 62 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (206)
+|||||-.|.......++.+|++++++|+...-++..-.-.-+.++ . +.|+++|+||+|..
T Consensus 202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq----~----~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ----N----RLPIVVVINKVDRL 262 (971)
T ss_pred ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh----c----cCcEEEEEehhHHH
Confidence 9999999999999999999999999999998766554332222221 1 78999999999963
No 331
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.19 E-value=2e-10 Score=82.90 Aligned_cols=173 Identities=15% Similarity=0.088 Sum_probs=106.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh-------hccchhhhhccC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRGA 81 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~ 81 (206)
.+|.++|.|.+||||++..+.+.........+++.........+.+ -++++.|.||.-+ -........+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 4899999999999999999998765544444444333344444455 4688999999432 233455677889
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCC---------------------------------------------
Q 028647 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPD--------------------------------------------- 116 (206)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 116 (206)
+.+++|+|+..|-+...+.+.-.+=........++
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT 217 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT 217 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence 99999999988765444433111100000000011
Q ss_pred -------------CCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHH-----Hh
Q 028647 117 -------------NFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA-----LK 178 (206)
Q Consensus 117 -------------~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~-----~~ 178 (206)
.+|.+.++||+|-..-+ +..-. +.....+++||..+.|++++++.+.+.+ +.
T Consensus 218 ~DdLIdvVegnr~yVp~iyvLNkIdsISiE-------ELdii---~~iphavpISA~~~wn~d~lL~~mweyL~LvriYt 287 (358)
T KOG1487|consen 218 ADDLIDVVEGNRIYVPCIYVLNKIDSISIE-------ELDII---YTIPHAVPISAHTGWNFDKLLEKMWEYLKLVRIYT 287 (358)
T ss_pred hhhhhhhhccCceeeeeeeeecccceeeee-------cccee---eeccceeecccccccchHHHHHHHhhcchheEEec
Confidence 24778888888855421 11111 1123478999999999999999998854 33
Q ss_pred cCccccccCCccccc
Q 028647 179 SGEEEEIYLPDTIDV 193 (206)
Q Consensus 179 ~~~~~~~~~~~~~~~ 193 (206)
+++....++..++-.
T Consensus 288 kPKgq~PDy~~pVvL 302 (358)
T KOG1487|consen 288 KPKGQPPDYTSPVVL 302 (358)
T ss_pred CCCCCCCCCCCCcee
Confidence 444444444444433
No 332
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=2.6e-10 Score=86.19 Aligned_cols=117 Identities=16% Similarity=0.217 Sum_probs=80.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEE------------------------------
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLF------------------------------ 57 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------------------------ 57 (206)
.=|+++|+-+.||||+++.|+...|+. ...+..++++....+.-+....
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 447999999999999999999988873 3344445555555554322111
Q ss_pred ---------EEEEEeCCCh-----------hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCC
Q 028647 58 ---------TLQIWDTAGQ-----------ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117 (206)
Q Consensus 58 ---------~~~i~D~~g~-----------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 117 (206)
.+.++||||. ..|......++..+|.++++||+...+--+.....+..+..+ .
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~-------E 211 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH-------E 211 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC-------c
Confidence 1799999992 235566778889999999999997654444444444444322 2
Q ss_pred CcEEEEEeCCCCCCC
Q 028647 118 FPFVVLGNKIDVDGG 132 (206)
Q Consensus 118 ~p~ivv~nK~Dl~~~ 132 (206)
-.+-||+||+|....
T Consensus 212 dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDT 226 (532)
T ss_pred ceeEEEeccccccCH
Confidence 357788999998763
No 333
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.15 E-value=2.9e-10 Score=86.25 Aligned_cols=179 Identities=20% Similarity=0.201 Sum_probs=107.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEE-----E--------Ee---
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS------------------NQYKATIGADFLTKE-----V--------QF--- 52 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~-----~--------~~--- 52 (206)
..++|+|+|...+|||||+..|+-+... ....+..+.++.-.. + ..
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 4789999999999999998776532110 001111111110000 0 00
Q ss_pred ---CCeEEEEEEEeCCChhhhccchhhhhc--cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 028647 53 ---EDRLFTLQIWDTAGQERFQSLGVAFYR--GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127 (206)
Q Consensus 53 ---~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (206)
++..-.++|+|.+|++.|......-+. -.|..++++-++...- ....+-+..- ....+|+++|.+|+
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-GmTKEHLgLA-------LaL~VPVfvVVTKI 283 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-GMTKEHLGLA-------LALHVPVFVVVTKI 283 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-eccHHhhhhh-------hhhcCcEEEEEEee
Confidence 112234899999999999887665443 3788888887764321 1111111111 11188999999999
Q ss_pred CCCCCCcccccHHHHHHHHHhcC-------------------------CCcEEEeeccCCCCHHHHHHHHHHHHHhcCcc
Q 028647 128 DVDGGNSRVVSEKKARAWCASKG-------------------------NIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182 (206)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~ 182 (206)
|+++++-.++....+.++.+..+ -+++|.+|..+|.|+.-|. ..+..+..+.+.
T Consensus 284 DMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk-mFLNlls~R~~~ 362 (641)
T KOG0463|consen 284 DMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK-MFLNLLSLRRQL 362 (641)
T ss_pred ccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH-HHHhhcCccccc
Confidence 99987655555555555554421 1578999999999987554 445555555555
Q ss_pred ccccCCcccccCC
Q 028647 183 EEIYLPDTIDVGN 195 (206)
Q Consensus 183 ~~~~~~~~~~~~~ 195 (206)
.+. .|+-|++.+
T Consensus 363 ~E~-~PAeFQIDD 374 (641)
T KOG0463|consen 363 NEN-DPAEFQIDD 374 (641)
T ss_pred ccC-CCcceeecc
Confidence 554 566677654
No 334
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.6e-09 Score=86.33 Aligned_cols=143 Identities=19% Similarity=0.217 Sum_probs=91.0
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
...+++-++|+||||+|||||++.|+............| +. .-+.++...++|..+|.. ........+-+|+
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----Pi-TvvsgK~RRiTflEcp~D---l~~miDvaKIaDL 136 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PI-TVVSGKTRRITFLECPSD---LHQMIDVAKIADL 136 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ce-EEeecceeEEEEEeChHH---HHHHHhHHHhhhe
Confidence 446788899999999999999999986532211111111 11 124556678899999932 3344556678999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcccccH-H--HHHHHHHhcCCCcEEEeec
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSRVVSE-K--KARAWCASKGNIPYFETSA 159 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~S~ 159 (206)
+++++|.+-...++++ +++.++..+ +.| ++-|++..|+.......... . .-+.|...++++.+|..|.
T Consensus 137 VlLlIdgnfGfEMETm-----EFLnil~~H---GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsg 208 (1077)
T COG5192 137 VLLLIDGNFGFEMETM-----EFLNILISH---GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSG 208 (1077)
T ss_pred eEEEeccccCceehHH-----HHHHHHhhc---CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecc
Confidence 9999999876544544 223333344 334 78899999986532111111 1 1234666788899999997
Q ss_pred cCC
Q 028647 160 KEG 162 (206)
Q Consensus 160 ~~~ 162 (206)
..+
T Consensus 209 V~n 211 (1077)
T COG5192 209 VEN 211 (1077)
T ss_pred ccc
Confidence 653
No 335
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.09 E-value=6.5e-10 Score=79.27 Aligned_cols=95 Identities=25% Similarity=0.282 Sum_probs=65.2
Q ss_pred hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHH---
Q 028647 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWC--- 146 (206)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--- 146 (206)
+...+..+++.+|++++|+|+.++.. .|...+.... .+.|+++|+||+|+.... ...+....+.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-----~~~~~ilV~NK~Dl~~~~---~~~~~~~~~~~~~ 90 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-----GNNPVILVGNKIDLLPKD---KNLVRIKNWLRAK 90 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-----CCCcEEEEEEchhcCCCC---CCHHHHHHHHHHH
Confidence 56778888899999999999987542 1112221111 167999999999997532 2222233332
Q ss_pred --HhcC--CCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647 147 --ASKG--NIPYFETSAKEGINVEEAFQCIAKNAL 177 (206)
Q Consensus 147 --~~~~--~~~~~~~S~~~~~~i~~l~~~l~~~~~ 177 (206)
...+ ...++.+||+++.|++++++.|.+.+.
T Consensus 91 ~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 91 AAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 2222 236899999999999999999998874
No 336
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.1e-09 Score=83.05 Aligned_cols=156 Identities=19% Similarity=0.271 Sum_probs=96.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------CCccce--eEEEEEEEeCC------------------
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQY------------KATIGA--DFLTKEVQFED------------------ 54 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~------------~~~~~~--~~~~~~~~~~~------------------ 54 (206)
-.++++|+|...+|||||+..|..+...... +-..+. .+....+-+++
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 4689999999999999999988764322110 000110 00000011111
Q ss_pred -eEEEEEEEeCCChhhhccchhhhhcc--CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 028647 55 -RLFTLQIWDTAGQERFQSLGVAFYRG--ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (206)
Q Consensus 55 -~~~~~~i~D~~g~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (206)
..-.++|+|.+|+..|.....+.+.. .|.+++|++++....+..-..+ ..+ ..+ ++|++|+.+|+|+..
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHL-gl~-~AL------~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHL-GLI-AAL------NIPFFVLVTKMDLVD 317 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHH-HHH-HHh------CCCeEEEEEeecccc
Confidence 11237999999999999888777654 7999999999876655443221 111 111 899999999999987
Q ss_pred CCcccccHHHHHHHH----------------------Hh---cCCCcEEEeeccCCCCHHHHHH
Q 028647 132 GNSRVVSEKKARAWC----------------------AS---KGNIPYFETSAKEGINVEEAFQ 170 (206)
Q Consensus 132 ~~~~~~~~~~~~~~~----------------------~~---~~~~~~~~~S~~~~~~i~~l~~ 170 (206)
........+++..+. ++ -+..|++.+|+..|+|++-+..
T Consensus 318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~ 381 (591)
T KOG1143|consen 318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT 381 (591)
T ss_pred chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence 532222222222222 11 1236899999999999875443
No 337
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.07 E-value=1.1e-09 Score=75.61 Aligned_cols=96 Identities=20% Similarity=0.157 Sum_probs=64.8
Q ss_pred hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc
Q 028647 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK 149 (206)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (206)
|..+.++.++++|++++|+|+.++...... .+...+ . . .+.|+++|+||+|+.+.. . .+....+....
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~-~---~---~~~p~iiv~NK~Dl~~~~--~--~~~~~~~~~~~ 69 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYV-L---E---LGKKLLIVLNKADLVPKE--V--LEKWKSIKESE 69 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHH-H---h---CCCcEEEEEEhHHhCCHH--H--HHHHHHHHHhC
Confidence 456677888889999999999876432221 111111 1 1 167999999999986431 1 11222233333
Q ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647 150 GNIPYFETSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 150 ~~~~~~~~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
+ .+++.+|++++.|++++++.+.+.+..
T Consensus 70 ~-~~~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 70 G-IPVVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred C-CcEEEEEccccccHHHHHHHHHHHHhh
Confidence 3 679999999999999999999988753
No 338
>PRK12288 GTPase RsgA; Reviewed
Probab=98.97 E-value=3.6e-09 Score=81.77 Aligned_cols=89 Identities=17% Similarity=0.133 Sum_probs=66.0
Q ss_pred hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE 156 (206)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
.+.++|.+++|++.....++..+..|+..... .++|.++|+||+|+........ .+.........+ .+++.
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~-------~~i~~VIVlNK~DL~~~~~~~~-~~~~~~~y~~~g-~~v~~ 187 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET-------LGIEPLIVLNKIDLLDDEGRAF-VNEQLDIYRNIG-YRVLM 187 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh-------cCCCEEEEEECccCCCcHHHHH-HHHHHHHHHhCC-CeEEE
Confidence 45789999999999888888888888764431 1789999999999976421111 222223334455 78999
Q ss_pred eeccCCCCHHHHHHHHHH
Q 028647 157 TSAKEGINVEEAFQCIAK 174 (206)
Q Consensus 157 ~S~~~~~~i~~l~~~l~~ 174 (206)
+|+.++.|++++++.|..
T Consensus 188 vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 188 VSSHTGEGLEELEAALTG 205 (347)
T ss_pred EeCCCCcCHHHHHHHHhh
Confidence 999999999999998865
No 339
>PRK12289 GTPase RsgA; Reviewed
Probab=98.97 E-value=6.7e-09 Score=80.33 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=64.3
Q ss_pred cchhhhhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC
Q 028647 72 SLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG 150 (206)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (206)
.+....+.++|.+++|+|+.++. ....+..|+..... .++|+++|+||+||.... . .+...+....++
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~-------~~ip~ILVlNK~DLv~~~--~--~~~~~~~~~~~g 149 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES-------TGLEIVLCLNKADLVSPT--E--QQQWQDRLQQWG 149 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEEchhcCChH--H--HHHHHHHHHhcC
Confidence 34455688999999999998775 33445566554421 178999999999997431 1 122233334555
Q ss_pred CCcEEEeeccCCCCHHHHHHHHHH
Q 028647 151 NIPYFETSAKEGINVEEAFQCIAK 174 (206)
Q Consensus 151 ~~~~~~~S~~~~~~i~~l~~~l~~ 174 (206)
..++.+|+.++.|+++|++.+..
T Consensus 150 -~~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 150 -YQPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred -CeEEEEEcCCCCCHHHHhhhhcc
Confidence 68999999999999999988864
No 340
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.95 E-value=5.5e-09 Score=79.10 Aligned_cols=89 Identities=18% Similarity=0.125 Sum_probs=66.1
Q ss_pred hhhhhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCC
Q 028647 74 GVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNI 152 (206)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (206)
.+..+.++|.+++|+|+.++. ++..+.+|+..+... ++|+++|+||+|+.+. .. ......+....+ .
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~-------~ip~iIVlNK~DL~~~--~~--~~~~~~~~~~~g-~ 139 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA-------GIEPVIVLTKADLLDD--EE--EELELVEALALG-Y 139 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc-------CCCEEEEEEHHHCCCh--HH--HHHHHHHHHhCC-C
Confidence 345578999999999999887 777777777655421 7899999999999754 11 112223333444 7
Q ss_pred cEEEeeccCCCCHHHHHHHHHH
Q 028647 153 PYFETSAKEGINVEEAFQCIAK 174 (206)
Q Consensus 153 ~~~~~S~~~~~~i~~l~~~l~~ 174 (206)
+++.+|+.++.|+++++..|..
T Consensus 140 ~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 140 PVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred eEEEEECCCCccHHHHHhhhcc
Confidence 8999999999999999887763
No 341
>PRK00098 GTPase RsgA; Reviewed
Probab=98.93 E-value=6.3e-09 Score=79.20 Aligned_cols=88 Identities=22% Similarity=0.191 Sum_probs=63.0
Q ss_pred hhhhccCcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCc
Q 028647 75 VAFYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIP 153 (206)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (206)
+..+.++|.+++|+|+.++..... +..|+..+.. . ++|+++|+||+|+.+. .. ..+...+.....+ .+
T Consensus 75 q~iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~-----~ip~iIVlNK~DL~~~--~~-~~~~~~~~~~~~g-~~ 143 (298)
T PRK00098 75 KLIAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--N-----GIKPIIVLNKIDLLDD--LE-EARELLALYRAIG-YD 143 (298)
T ss_pred cceeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--C-----CCCEEEEEEhHHcCCC--HH-HHHHHHHHHHHCC-Ce
Confidence 334689999999999988765444 3566554432 1 7899999999999643 22 2233344445555 78
Q ss_pred EEEeeccCCCCHHHHHHHHH
Q 028647 154 YFETSAKEGINVEEAFQCIA 173 (206)
Q Consensus 154 ~~~~S~~~~~~i~~l~~~l~ 173 (206)
++++|++++.|++++++.+.
T Consensus 144 v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 144 VLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred EEEEeCCCCccHHHHHhhcc
Confidence 99999999999999988763
No 342
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.92 E-value=2.2e-09 Score=80.39 Aligned_cols=90 Identities=23% Similarity=0.206 Sum_probs=68.1
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCC---------------eEEEEEEEeCCC
Q 028647 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED---------------RLFTLQIWDTAG 66 (206)
Q Consensus 2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~g 66 (206)
..+..+.++++++|.|++|||||+|.|++......-.|..|.++....+.+.. ....++++|++|
T Consensus 14 ~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG 93 (391)
T KOG1491|consen 14 LGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG 93 (391)
T ss_pred ccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence 34556788999999999999999999999887777777777777666654322 234689999998
Q ss_pred -------hhhhccchhhhhccCcEEEEEEECC
Q 028647 67 -------QERFQSLGVAFYRGADCCVLVYDVN 91 (206)
Q Consensus 67 -------~~~~~~~~~~~~~~~d~~i~v~d~~ 91 (206)
.....+.....++.+|+++.|+++.
T Consensus 94 LvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 94 LVKGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 2233444556678899999999865
No 343
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=1.1e-08 Score=73.34 Aligned_cols=173 Identities=17% Similarity=0.250 Sum_probs=101.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc---hhhhhccCcEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL---GVAFYRGADCCV 85 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~~~~~~~~d~~i 85 (206)
.+|+++|...+||||+-..... +..+...-....+.....-.+.+.-+.+.+||.|||-.+..- ....++.+.+++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFh-kMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFH-KMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeee-ccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 4599999999999997544333 222221111111111111223444467899999998655443 345678899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH----hcC----CCcEEEe
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA----SKG----NIPYFET 157 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~ 157 (206)
+|+|+.+. -.+.+..+...+-+. - .-.+++.+=|.+.|.|-..++.+.....++.+-.+ ..+ .+.+.-+
T Consensus 107 fvIDaQdd-y~eala~L~~~v~ra-y-kvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT 183 (347)
T KOG3887|consen 107 FVIDAQDD-YMEALARLHMTVERA-Y-KVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT 183 (347)
T ss_pred EEEechHH-HHHHHHHHHHHhhhe-e-ecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence 99999752 223333332222222 2 22337888899999997665544443333332221 111 1445555
Q ss_pred eccCCCCHHHHHHHHHHHHHhcCcccccc
Q 028647 158 SAKEGINVEEAFQCIAKNALKSGEEEEIY 186 (206)
Q Consensus 158 S~~~~~~i~~l~~~l~~~~~~~~~~~~~~ 186 (206)
|-. ...|-+.|..+++.+..+.|.-+..
T Consensus 184 SIy-DHSIfEAFSkvVQkLipqLptLEnl 211 (347)
T KOG3887|consen 184 SIY-DHSIFEAFSKVVQKLIPQLPTLENL 211 (347)
T ss_pred eec-chHHHHHHHHHHHHHhhhchhHHHH
Confidence 544 4568899999999988877766654
No 344
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.90 E-value=8.4e-09 Score=79.63 Aligned_cols=83 Identities=22% Similarity=0.056 Sum_probs=62.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEeCCe---------------EEEEEEEeCCChhh---
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER--- 69 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~--- 69 (206)
++++++|.|++|||||++.|++... .....+..|..+....+.+.+. ...+.+.|.||.-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998876 5444566666666666665542 13578999999322
Q ss_pred ----hccchhhhhccCcEEEEEEECC
Q 028647 70 ----FQSLGVAFYRGADCCVLVYDVN 91 (206)
Q Consensus 70 ----~~~~~~~~~~~~d~~i~v~d~~ 91 (206)
........++.+|++++|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 3334556678999999999984
No 345
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.89 E-value=8.7e-09 Score=75.31 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=93.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-ccceeEEEEEEEeCCeEEEEEEEeCCC----------hhhhccc
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA-TIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSL 73 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 73 (206)
+.....+++.|.+|+|||+|++.++.......... ..+.+.....+.+.. .+.++|.|| ..++...
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence 35568999999999999999999987554322222 333333233333333 457889999 2234444
Q ss_pred hhhhhcc---CcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc--cccHHHHHHHH
Q 028647 74 GVAFYRG---ADCCVLVYDVNSMK--SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR--VVSEKKARAWC 146 (206)
Q Consensus 74 ~~~~~~~---~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~ 146 (206)
...++.+ .-.+++.+|++-+. .-.....|+.+- ++|+.+|+||+|......+ ......+....
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~----------~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f 279 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN----------NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINF 279 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc----------CCCeEEeeehhhhhhhccccccCccccceeeh
Confidence 4444432 34556667776432 112234555544 8999999999998654221 11111111111
Q ss_pred Hhc------CCCcEEEeeccCCCCHHHHHHHHHHH
Q 028647 147 ASK------GNIPYFETSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 147 ~~~------~~~~~~~~S~~~~~~i~~l~~~l~~~ 175 (206)
..+ ...+.+.+|+.++.|++.|+-.+.+.
T Consensus 280 ~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 280 QGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred hhccccceeccCCceeeecccccCceeeeeehhhh
Confidence 111 12456789999999999988777654
No 346
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.86 E-value=1.3e-08 Score=80.39 Aligned_cols=119 Identities=15% Similarity=0.167 Sum_probs=75.4
Q ss_pred EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChh-------hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-------SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 129 (206)
..+.++|++|+..-+..|.+++.+++++|||+++++-+ ....+.+-+..+...+......+.|++|++||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 56799999999989999999999999999999987421 11223333333444444444448899999999997
Q ss_pred CCC----Cc-----------c-cccHHHHHHHHHh--------c---CCCcEEEeeccCCCCHHHHHHHHHHH
Q 028647 130 DGG----NS-----------R-VVSEKKARAWCAS--------K---GNIPYFETSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 130 ~~~----~~-----------~-~~~~~~~~~~~~~--------~---~~~~~~~~S~~~~~~i~~l~~~l~~~ 175 (206)
... .. . ....+.+..+... . ..+.+..++|.+..+++.+|+.+.+-
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~ 388 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI 388 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence 321 10 0 0223334433321 1 11245678888888888888877654
No 347
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.86 E-value=7.3e-09 Score=70.25 Aligned_cols=54 Identities=30% Similarity=0.366 Sum_probs=37.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (206)
+++++|.+|+|||||+|++.+....... ...+.+.....+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence 7999999999999999999987654221 1222333344444544 4689999994
No 348
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.1e-07 Score=77.40 Aligned_cols=146 Identities=23% Similarity=0.270 Sum_probs=85.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE----------------------------------------
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF---------------------------------------- 45 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~---------------------------------------- 45 (206)
+..++|++.|..++||||++|.++-.+..+......+.-+
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 4578999999999999999999876443322111111000
Q ss_pred ---EEEEEEeCCeE-----EEEEEEeCCC---hhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC
Q 028647 46 ---LTKEVQFEDRL-----FTLQIWDTAG---QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD 114 (206)
Q Consensus 46 ---~~~~~~~~~~~-----~~~~i~D~~g---~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 114 (206)
....+-+.+.. -.+.++|.|| ..+..+....+...+|++|+|.++.+..+... . +++......
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k----~Ff~~vs~~- 260 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-K----QFFHKVSEE- 260 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-H----HHHHHhhcc-
Confidence 00000011110 0267899999 34555666677788999999999987654332 2 333333332
Q ss_pred CCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC-------CCcEEEeeccC
Q 028647 115 PDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG-------NIPYFETSAKE 161 (206)
Q Consensus 115 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~S~~~ 161 (206)
+..++|+-||.|.... .....+++.+-...+. .-.++++|++.
T Consensus 261 --KpniFIlnnkwDasas--e~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 261 --KPNIFILNNKWDASAS--EPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred --CCcEEEEechhhhhcc--cHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 3347788889998765 3344444444332222 13478888664
No 349
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.84 E-value=2e-08 Score=78.45 Aligned_cols=96 Identities=23% Similarity=0.267 Sum_probs=67.6
Q ss_pred hhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHH---
Q 028647 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKAR--- 143 (206)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~--- 143 (206)
.+.+..+...+.+.++++++|+|+.+.. ..|...+..... +.|+++|+||+|+.+.. ...+...
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-----~~piilV~NK~DLl~k~---~~~~~~~~~l 116 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-----GNPVLLVGNKIDLLPKS---VNLSKIKEWM 116 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-----CCCEEEEEEchhhCCCC---CCHHHHHHHH
Confidence 5567777778888999999999997653 223334443332 56999999999997632 2233333
Q ss_pred -HHHHhcCC--CcEEEeeccCCCCHHHHHHHHHHH
Q 028647 144 -AWCASKGN--IPYFETSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 144 -~~~~~~~~--~~~~~~S~~~~~~i~~l~~~l~~~ 175 (206)
+++...+. ..++.+||+++.|++++++.|.+.
T Consensus 117 ~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 117 KKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 33445542 258999999999999999999765
No 350
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.83 E-value=1.7e-08 Score=69.72 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=36.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (206)
..++|+++|.||+|||||+|+|.+..... ...++.+ .....+.... .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGET--KVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCee--EeEEEEEcCC---CEEEEECcC
Confidence 45789999999999999999999865432 2223322 2233333332 256999998
No 351
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.82 E-value=1.4e-08 Score=71.03 Aligned_cols=55 Identities=24% Similarity=0.398 Sum_probs=38.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (206)
..++++++|.||+|||||+|+|.+.... ....+++|.. ...+..+. .+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~--~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKS--MQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcc--eEEEEeCC---CEEEEECcC
Confidence 3589999999999999999999986643 3333443333 33333332 478999998
No 352
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.80 E-value=4.2e-08 Score=67.76 Aligned_cols=91 Identities=14% Similarity=0.116 Sum_probs=57.6
Q ss_pred hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEE
Q 028647 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYF 155 (206)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (206)
..+..+|++++|+|+.++.... ...+...+... ..+.|+++|+||+|+.+. ....+....+...++ ...+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~--~~~i~~~l~~~----~~~~p~ilVlNKiDl~~~---~~~~~~~~~~~~~~~-~~~~ 73 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTR--CKHVEEYLKKE----KPHKHLIFVLNKCDLVPT---WVTARWVKILSKEYP-TIAF 73 (157)
T ss_pred HhhhhCCEEEEEEECCCCcccc--CHHHHHHHHhc----cCCCCEEEEEEchhcCCH---HHHHHHHHHHhcCCc-EEEE
Confidence 4567899999999999864311 11112222111 115799999999999753 111222333333232 3357
Q ss_pred EeeccCCCCHHHHHHHHHHHH
Q 028647 156 ETSAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 156 ~~S~~~~~~i~~l~~~l~~~~ 176 (206)
.+|++.+.|++++++.+.+..
T Consensus 74 ~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 74 HASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred EeeccccccHHHHHHHHHHHH
Confidence 899999999999999997754
No 353
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.80 E-value=3.2e-08 Score=69.35 Aligned_cols=98 Identities=21% Similarity=0.122 Sum_probs=64.5
Q ss_pred CCh-hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHH
Q 028647 65 AGQ-ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKAR 143 (206)
Q Consensus 65 ~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 143 (206)
||+ .+........+.++|++++|+|+.++...... . +..... +.|+++|+||+|+.+. .. .....
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~~~-----~k~~ilVlNK~Dl~~~--~~--~~~~~ 68 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKILG-----NKPRIIVLNKADLADP--KK--TKKWL 68 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-h----hHhHhc-----CCCEEEEEehhhcCCh--HH--HHHHH
Confidence 443 23445567778899999999999876442211 1 111111 5699999999999643 11 11121
Q ss_pred HHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647 144 AWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177 (206)
Q Consensus 144 ~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~ 177 (206)
++..... ..++.+|+.++.|++++.+.+.+.+.
T Consensus 69 ~~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 69 KYFESKG-EKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred HHHHhcC-CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 2222322 56899999999999999999988764
No 354
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=5.2e-08 Score=79.99 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=84.7
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCC------------CC--CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK------------FS--NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (206)
......+++++.+..-|||||..+|+... |. ...+.+.+.+.....++.-.+.+.+.++|+|||-.
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 34567899999999999999999987432 11 23344445555555556655668899999999999
Q ss_pred hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (206)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 129 (206)
|.+......+-+|++++++|+..+-..++..- +.+.+.. +...++|+||+|.
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt~~v-lrq~~~~-------~~~~~lvinkidr 136 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYAV-LRQAWIE-------GLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhHHHH-HHHHHHc-------cCceEEEEehhhh
Confidence 99999999999999999999986533233211 1111111 6678999999994
No 355
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.73 E-value=4.2e-08 Score=68.76 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=39.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (206)
...++++++|.+|+|||||+|++.+..+.. .....+++.....+.++ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAK-VGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 345799999999999999999999876532 22222333334444443 24689999984
No 356
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.72 E-value=1.5e-07 Score=83.58 Aligned_cols=113 Identities=21% Similarity=0.309 Sum_probs=67.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCC----C--CccceeEEEEEEEeCCeEEEEEEEeCCChh--------hhccchhh
Q 028647 11 VIILGDSGVGKTSLMNQYVNKKFSNQY----K--ATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSLGVA 76 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~ 76 (206)
.+|+|++|+||||+++.- +-.++... . .+.+.+ ....+.+.+.. .++|++|.. .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t-~~c~wwf~~~a---vliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGT-RNCDWWFTDEA---VLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCC-cccceEecCCE---EEEcCCCccccCCCcccccHHHHHH
Confidence 489999999999999875 32332111 1 111111 12334455544 489999922 12233444
Q ss_pred hh---------ccCcEEEEEEECCCh-----hhH----HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 77 FY---------RGADCCVLVYDVNSM-----KSF----DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 77 ~~---------~~~d~~i~v~d~~~~-----~s~----~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
++ +-.|++|+++|+.+- +.. ..+...+.++...+.. ..||.||+||+|+...
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~----~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA----RFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC----CCCEEEEEecchhhcC
Confidence 44 238999999998752 111 2233344445444433 8999999999998865
No 357
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.72 E-value=1.1e-07 Score=65.52 Aligned_cols=84 Identities=19% Similarity=0.090 Sum_probs=54.3
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccC
Q 028647 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE 161 (206)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 161 (206)
|++++|+|+.++.+.... ++.. ..... .++|+++|+||+|+.+. ....+....+.... ...++.+|+.+
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~--~~~~~---~~~p~IiVlNK~Dl~~~---~~~~~~~~~~~~~~-~~~ii~vSa~~ 69 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIER--VLIKE---KGKKLILVLNKADLVPK---EVLRKWLAYLRHSY-PTIPFKISATN 69 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHH--HHHhc---CCCCEEEEEechhcCCH---HHHHHHHHHHHhhC-CceEEEEeccC
Confidence 789999999887654321 2221 01111 17899999999998643 11111122232233 36789999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028647 162 GINVEEAFQCIAKNA 176 (206)
Q Consensus 162 ~~~i~~l~~~l~~~~ 176 (206)
+.|++++++.+.+..
T Consensus 70 ~~gi~~L~~~i~~~~ 84 (155)
T cd01849 70 GQGIEKKESAFTKQT 84 (155)
T ss_pred CcChhhHHHHHHHHh
Confidence 999999999998764
No 358
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.71 E-value=3e-06 Score=57.43 Aligned_cols=57 Identities=30% Similarity=0.390 Sum_probs=39.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCC
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 65 (206)
+..++|++.|+||+||||++.++...--... ..-..+...++.-.++..-+.+.|+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g---~kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG---YKVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcC---ceeeeEEeeeeecCCeEeeeEEEEcc
Confidence 3568999999999999999998875321111 11223445566666777777888877
No 359
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.70 E-value=3.9e-08 Score=70.13 Aligned_cols=54 Identities=20% Similarity=0.342 Sum_probs=37.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC---------CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKF---------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (206)
..+++++|.+|+|||||+|+|.+... .....++ ++.....+.+.. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~g--tT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPG--TTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCC--eeeeeEEEecCC---CCEEEeCcC
Confidence 35899999999999999999997542 2223333 334344444443 368999998
No 360
>PRK14974 cell division protein FtsY; Provisional
Probab=98.68 E-value=5.3e-08 Score=74.84 Aligned_cols=94 Identities=18% Similarity=0.154 Sum_probs=53.6
Q ss_pred EEEEEEeCCChhhhcc----chhhhh--ccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647 57 FTLQIWDTAGQERFQS----LGVAFY--RGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 129 (206)
+.+.++||+|...... ...... .+.|.+++|+|+.... ..+.+ ..+.... + .--+++||.|.
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~~------~-~~giIlTKlD~ 291 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEAV------G-IDGVILTKVDA 291 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhcC------C-CCEEEEeeecC
Confidence 4578999999543222 222222 3578999999997542 22222 2222111 1 34788999997
Q ss_pred CCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHH
Q 028647 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170 (206)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~ 170 (206)
..... .+..+....+ .|+.+++ .|++++++..
T Consensus 292 ~~~~G------~~ls~~~~~~-~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 292 DAKGG------AALSIAYVIG-KPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCCcc------HHHHHHHHHC-cCEEEEe--CCCChhhccc
Confidence 65322 1222223334 7888887 7888887654
No 361
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.68 E-value=6.5e-07 Score=71.53 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=64.7
Q ss_pred EEEEEeCCCh-------------hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEE
Q 028647 58 TLQIWDTAGQ-------------ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124 (206)
Q Consensus 58 ~~~i~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 124 (206)
...+.|.||. +...++..+++.+.+++|+|+--.. .+.-......+...+.+. +...|+|+
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~---GrRTIfVL 486 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPH---GRRTIFVL 486 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCC---CCeeEEEE
Confidence 3678999992 2344566788899999999983221 122222333344444444 77899999
Q ss_pred eCCCCCCCCcccccHHHHHHHHHhc--C--CCcEEEeecc---CCCCHHHHHHHHHH
Q 028647 125 NKIDVDGGNSRVVSEKKARAWCASK--G--NIPYFETSAK---EGINVEEAFQCIAK 174 (206)
Q Consensus 125 nK~Dl~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~S~~---~~~~i~~l~~~l~~ 174 (206)
+|.|+++. ...+...++++.... + +..|+.+-.- ..+.|+.+.++=.+
T Consensus 487 TKVDlAEk--nlA~PdRI~kIleGKLFPMKALGYfaVVTGrGnssdSIdaIR~YEE~ 541 (980)
T KOG0447|consen 487 TKVDLAEK--NVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNSSESIEAIREYEEE 541 (980)
T ss_pred eecchhhh--ccCCHHHHHHHHhcCccchhhcceeEEEecCCCcchhHHHHHHHHHH
Confidence 99999876 456677777765431 1 2234443322 23356655554433
No 362
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.68 E-value=7.6e-08 Score=72.57 Aligned_cols=57 Identities=25% Similarity=0.432 Sum_probs=39.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (206)
...++++|+|.||+|||||+|+|.+..... ...+++| .....+.+.. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVT--KGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCee--cceEEEEeCC---CEEEEECCCc
Confidence 346899999999999999999999766432 2233333 3333444433 3689999995
No 363
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.67 E-value=6e-08 Score=74.24 Aligned_cols=145 Identities=19% Similarity=0.231 Sum_probs=77.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC----------CCCCC-----------ccceeEEEEEEE-------------e
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS----------NQYKA-----------TIGADFLTKEVQ-------------F 52 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~----------~~~~~-----------~~~~~~~~~~~~-------------~ 52 (206)
.+-.++++|++|+||||++..|...-.. +.+.. ..+..+...... .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999887531100 00000 001111111000 0
Q ss_pred CCeEEEEEEEeCCChhhhccc----hhhhh--------ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcE
Q 028647 53 EDRLFTLQIWDTAGQERFQSL----GVAFY--------RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120 (206)
Q Consensus 53 ~~~~~~~~i~D~~g~~~~~~~----~~~~~--------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ 120 (206)
....+.+.++||||....... ...+. ...+..++|+|++... +.+.+ ...+.... -+.
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~~-------~~~ 262 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEAV-------GLT 262 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhhC-------CCC
Confidence 112356889999995432221 11111 2467889999998532 22222 22222211 145
Q ss_pred EEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHH
Q 028647 121 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170 (206)
Q Consensus 121 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~ 170 (206)
-+|+||.|-... .-.+..+....+ .|+.+++ .|++++++..
T Consensus 263 giIlTKlD~t~~------~G~~l~~~~~~~-~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 263 GIILTKLDGTAK------GGVVFAIADELG-IPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred EEEEECCCCCCC------ccHHHHHHHHHC-CCEEEEe--CCCChhhCcc
Confidence 789999995432 222333344454 8888888 7777877643
No 364
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=6.3e-08 Score=77.79 Aligned_cols=119 Identities=23% Similarity=0.245 Sum_probs=81.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-----C-----------CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-----N-----------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (206)
.+..+|.++-+-.+||||+-++.+..... . ..+...+.+.......+.++.+.+.++|||||-.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 45678999999999999999886542110 0 0111123344444444455568899999999999
Q ss_pred hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
|.-.....++-.|+.++|+++...-.-+...-|.+ +.+. ++|.|..+||+|....
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry-------~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRY-------NVPRICFINKMDRMGA 171 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhc-------CCCeEEEEehhhhcCC
Confidence 99999999999999999999876432232222222 2111 8899999999998654
No 365
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.66 E-value=1.2e-07 Score=71.90 Aligned_cols=57 Identities=23% Similarity=0.451 Sum_probs=40.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (206)
...++++++|.||+|||||+|+|.+.... ....++.|.. ...+..+. .+.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA--QQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE--EEEEEeCC---cEEEEECCCc
Confidence 35689999999999999999999987653 2333333333 33344433 4679999995
No 366
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.66 E-value=1.7e-07 Score=70.68 Aligned_cols=101 Identities=22% Similarity=0.189 Sum_probs=67.1
Q ss_pred CCChh-hhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHH
Q 028647 64 TAGQE-RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKA 142 (206)
Q Consensus 64 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 142 (206)
.|||. .........+..+|++++|+|+..+.+.... .+..+ .. +.|+++|+||+|+.+. .. .+..
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~---l~-----~kp~IiVlNK~DL~~~---~~-~~~~ 69 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEI---RG-----NKPRLIVLNKADLADP---AV-TKQW 69 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHH---HC-----CCCEEEEEEccccCCH---HH-HHHH
Confidence 46653 3345567778899999999999876543221 11112 11 5799999999998642 11 1222
Q ss_pred HHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647 143 RAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 143 ~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~ 179 (206)
.++....+ .+++.+|++++.|++++++.+.+.+...
T Consensus 70 ~~~~~~~~-~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 70 LKYFEEKG-IKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred HHHHHHcC-CeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 22223333 6789999999999999999998887543
No 367
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.65 E-value=7e-08 Score=74.15 Aligned_cols=58 Identities=24% Similarity=0.422 Sum_probs=42.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (206)
...++++|+|-||+|||||||+|.+.... ...+..|.+.....+..+.. +.++||||.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccce-eeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 34588999999999999999999988763 22333355555555555554 679999994
No 368
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.65 E-value=3.3e-07 Score=66.96 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=55.4
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcC--CCCCCCC-CccceeEEEEEEEeC-CeEEEEEEEeCCChhhh------ccc
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNK--KFSNQYK-ATIGADFLTKEVQFE-DRLFTLQIWDTAGQERF------QSL 73 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~------~~~ 73 (206)
...+...|.|+|++++|||||+|.|++. .+..... ...|..+........ +....+.++||+|.... ...
T Consensus 3 ~~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 3 AGFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhh
Confidence 3456788999999999999999999988 5543222 122222222222221 13357899999994432 222
Q ss_pred hhhhhcc--CcEEEEEEECCC
Q 028647 74 GVAFYRG--ADCCVLVYDVNS 92 (206)
Q Consensus 74 ~~~~~~~--~d~~i~v~d~~~ 92 (206)
....+.. ++++|+..+...
T Consensus 83 ~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHHHhCEEEEeccCcc
Confidence 2333334 888888887764
No 369
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.63 E-value=5.3e-08 Score=66.69 Aligned_cols=59 Identities=27% Similarity=0.327 Sum_probs=33.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFS------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (206)
-.++++|++|||||||+|.|...... .....+..++.....+.+.+.. .++||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCcc
Confidence 36799999999999999999976321 1111111122223334443433 58999995544
No 370
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.62 E-value=1e-07 Score=65.65 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=38.9
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (206)
....+++++|.+|+|||||+|.+.+... .....+.++..... .... ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCC
Confidence 3468899999999999999999998653 23334444444433 2232 2478999998
No 371
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.62 E-value=3.2e-07 Score=63.37 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028647 11 VIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
+.++|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999998765
No 372
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.62 E-value=1.7e-07 Score=64.68 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=37.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (206)
...+++++|.+|+||||++++|.+.... ...++.+.+.....+..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 3578899999999999999999975532 2233434333322233333 478999998
No 373
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.61 E-value=1.1e-06 Score=65.90 Aligned_cols=95 Identities=15% Similarity=0.102 Sum_probs=54.3
Q ss_pred EEEEEEeCCChhhhccchh----h---hh-----ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEE
Q 028647 57 FTLQIWDTAGQERFQSLGV----A---FY-----RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~----~---~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 124 (206)
+.+.++||||......... . .. ..+|.+++|+|++... +.+. ....+.... + +.-+|+
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~------~-~~g~Il 224 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV------G-LTGIIL 224 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC------C-CCEEEE
Confidence 5688999999553322211 1 11 1389999999997532 2222 222232211 1 357889
Q ss_pred eCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHH
Q 028647 125 NKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170 (206)
Q Consensus 125 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~ 170 (206)
||.|-... .-....+....+ .|+.+++ .|++++++..
T Consensus 225 TKlDe~~~------~G~~l~~~~~~~-~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 225 TKLDGTAK------GGIILSIAYELK-LPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred EccCCCCC------ccHHHHHHHHHC-cCEEEEe--CCCChHhCcc
Confidence 99996543 222233333444 7888888 7777776643
No 374
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.60 E-value=5.5e-06 Score=64.62 Aligned_cols=176 Identities=14% Similarity=0.168 Sum_probs=96.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC--------------CCCCCCccceeEEE----------EEEEe-CCeEEEEEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKF--------------SNQYKATIGADFLT----------KEVQF-EDRLFTLQI 61 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~--------------~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~i 61 (206)
-.+=|+|+||..+|||||+.||...-+ ..-+.+..|.++-+ ..+.+ ++..+++++
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 346689999999999999999964211 11122222222211 12233 567788999
Q ss_pred EeCCCh-------------h-----hhccc-----------hhhhhc--cCcEEEEEEECCC----hhhHHH-HHHHHHH
Q 028647 62 WDTAGQ-------------E-----RFQSL-----------GVAFYR--GADCCVLVYDVNS----MKSFDN-LNNWREE 105 (206)
Q Consensus 62 ~D~~g~-------------~-----~~~~~-----------~~~~~~--~~d~~i~v~d~~~----~~s~~~-~~~~~~~ 105 (206)
+|+.|- + .|... ++..+. ..=++++.-|.+= ++.+.. -.+...+
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 999880 0 01100 001111 1225555556541 222222 2333444
Q ss_pred HHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC--CHHHHHHHHHHHHHhcCccc
Q 028647 106 FLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI--NVEEAFQCIAKNALKSGEEE 183 (206)
Q Consensus 106 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~--~i~~l~~~l~~~~~~~~~~~ 183 (206)
+... ++|++|++|-.+=. .....+...++...|+ ++++++++..-. .+..+++. ++-..|..
T Consensus 176 Lk~i-------gKPFvillNs~~P~----s~et~~L~~eL~ekY~-vpVlpvnc~~l~~~DI~~Il~~----vLyEFPV~ 239 (492)
T PF09547_consen 176 LKEI-------GKPFVILLNSTKPY----SEETQELAEELEEKYD-VPVLPVNCEQLREEDITRILEE----VLYEFPVS 239 (492)
T ss_pred HHHh-------CCCEEEEEeCCCCC----CHHHHHHHHHHHHHhC-CcEEEeehHHcCHHHHHHHHHH----HHhcCCce
Confidence 4333 88999999987732 3456777777888887 999999887532 34444333 33333444
Q ss_pred cc--cCCcccccCCCCC
Q 028647 184 EI--YLPDTIDVGNSSQ 198 (206)
Q Consensus 184 ~~--~~~~~~~~~~~~~ 198 (206)
+. .+|.++..-...+
T Consensus 240 Ei~~~lP~Wve~L~~~H 256 (492)
T PF09547_consen 240 EININLPKWVEMLEDDH 256 (492)
T ss_pred EEEeecchHHhhcCCCc
Confidence 43 4666666544443
No 375
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.56 E-value=3.3e-07 Score=62.15 Aligned_cols=78 Identities=19% Similarity=0.128 Sum_probs=51.1
Q ss_pred hhhhhccCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCC
Q 028647 74 GVAFYRGADCCVLVYDVNSMKSFD--NLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGN 151 (206)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
....+..+|++++|+|+.++.+.. .+..++.. .. .++|+++|+||+|+.+. . ......++....+
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~----~~----~~k~~iivlNK~DL~~~--~--~~~~~~~~~~~~~- 71 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKE----VD----PRKKNILLLNKADLLTE--E--QRKAWAEYFKKEG- 71 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHh----cc----CCCcEEEEEechhcCCH--H--HHHHHHHHHHhcC-
Confidence 345678899999999998876533 22333222 11 16799999999998653 1 1223344444444
Q ss_pred CcEEEeeccCCCC
Q 028647 152 IPYFETSAKEGIN 164 (206)
Q Consensus 152 ~~~~~~S~~~~~~ 164 (206)
..++++|+.++.+
T Consensus 72 ~~ii~iSa~~~~~ 84 (141)
T cd01857 72 IVVVFFSALKENA 84 (141)
T ss_pred CeEEEEEecCCCc
Confidence 6799999998763
No 376
>PRK01889 GTPase RsgA; Reviewed
Probab=98.52 E-value=8.7e-07 Score=69.12 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=58.4
Q ss_pred hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE 156 (206)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
.+.++|.+++|+++..+.....+..++...... +++.++|+||+||.+. .. +....+.....+.+++.
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~-------~i~piIVLNK~DL~~~--~~---~~~~~~~~~~~g~~Vi~ 176 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES-------GAEPVIVLTKADLCED--AE---EKIAEVEALAPGVPVLA 176 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc-------CCCEEEEEEChhcCCC--HH---HHHHHHHHhCCCCcEEE
Confidence 468899999999997544444455554443322 7788999999999754 11 12222222233478999
Q ss_pred eeccCCCCHHHHHHHHH
Q 028647 157 TSAKEGINVEEAFQCIA 173 (206)
Q Consensus 157 ~S~~~~~~i~~l~~~l~ 173 (206)
+|+.++.|+++|..++.
T Consensus 177 vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 177 VSALDGEGLDVLAAWLS 193 (356)
T ss_pred EECCCCccHHHHHHHhh
Confidence 99999999999888874
No 377
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=5.7e-08 Score=74.97 Aligned_cols=119 Identities=21% Similarity=0.263 Sum_probs=88.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC--------CC--------CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKF--------SN--------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~--------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (206)
+..+|.++.+-.+||||...+++.-.- .. ..+...|.++....+.++++...+.++||||+-.|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 457899999999999999998764211 00 01122356677777888888899999999999999
Q ss_pred ccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 028647 71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (206)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 133 (206)
.-.....++-.|+++.|||++..-..+.+--|.+ .... ++|-+..+||+|...++
T Consensus 116 ~leverclrvldgavav~dasagve~qtltvwrq-----adk~---~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ-----ADKF---KIPAHCFINKMDKLAAN 170 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceeeeehh-----cccc---CCchhhhhhhhhhhhhh
Confidence 9999999999999999999986544344433332 2222 78999999999987653
No 378
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.50 E-value=6.8e-07 Score=67.80 Aligned_cols=101 Identities=21% Similarity=0.201 Sum_probs=67.3
Q ss_pred CCChh-hhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHH
Q 028647 64 TAGQE-RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKA 142 (206)
Q Consensus 64 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 142 (206)
.|||. .........+..+|++++|+|+..+.+.+. ..+..+. . +.|+++|+||+|+.+. .. .+..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~-----~kp~iiVlNK~DL~~~---~~-~~~~ 72 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---G-----NKPRLLILNKSDLADP---EV-TKKW 72 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C-----CCCEEEEEEchhcCCH---HH-HHHH
Confidence 56754 334456677889999999999987654322 1112221 1 5799999999998642 11 1222
Q ss_pred HHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647 143 RAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 143 ~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~ 179 (206)
.++....+ .+++.+|+.++.|++++++.+.+.+...
T Consensus 73 ~~~~~~~~-~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 73 IEYFEEQG-IKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred HHHHHHcC-CeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 22223333 6789999999999999999988877553
No 379
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.50 E-value=2.5e-07 Score=66.13 Aligned_cols=123 Identities=12% Similarity=0.118 Sum_probs=79.5
Q ss_pred eEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEE
Q 028647 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----------MKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124 (206)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 124 (206)
..+.+.+.|.+|+..-...|.+.+.+.-.+++++.++. ..-++....+...++. .....+.++|+.+
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~---yPWF~nssVIlFL 273 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIIT---YPWFQNSSVILFL 273 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhc---cccccCCceEEEe
Confidence 33457899999998888899999988877777766553 1122223333333333 3333478999999
Q ss_pred eCCCCCCCC--------------cccccHHHHHHHHHh----c-C----CCcEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647 125 NKIDVDGGN--------------SRVVSEKKARAWCAS----K-G----NIPYFETSAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 125 nK~Dl~~~~--------------~~~~~~~~~~~~~~~----~-~----~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
||.|+.++. ....+.+.+++|... . + .+.-.++-|.+.+||+.+|..+.+.++...
T Consensus 274 NKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 274 NKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred chhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 999986641 123344455554432 1 1 122356778899999999998888877654
No 380
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.50 E-value=1.5e-06 Score=68.80 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=61.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc------CCCC----CCCCC-----------ccceeEEEEEEEeC------------
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVN------KKFS----NQYKA-----------TIGADFLTKEVQFE------------ 53 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~------~~~~----~~~~~-----------~~~~~~~~~~~~~~------------ 53 (206)
++..|+++|++||||||++.+|.. .++. +.+.+ ..+..++......+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 357899999999999999998852 1110 11110 01111111000001
Q ss_pred -CeEEEEEEEeCCChhhhccc----hhhh--hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q 028647 54 -DRLFTLQIWDTAGQERFQSL----GVAF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126 (206)
Q Consensus 54 -~~~~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 126 (206)
...+.+.|+||+|....... .... ....+-+++|+|+.-..... .....+... --+.-+|+||
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~-------~~~~g~IlTK 248 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS-------VDVGSVIITK 248 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc-------cCCcEEEEEC
Confidence 12357889999995433222 1221 23478899999987543221 222222211 1256788999
Q ss_pred CCCCC
Q 028647 127 IDVDG 131 (206)
Q Consensus 127 ~Dl~~ 131 (206)
.|-..
T Consensus 249 lD~~a 253 (429)
T TIGR01425 249 LDGHA 253 (429)
T ss_pred ccCCC
Confidence 99654
No 381
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=6.1e-07 Score=65.90 Aligned_cols=119 Identities=19% Similarity=0.303 Sum_probs=73.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEEEEeCCeEEEEEEEeCCCh-------hhhc---
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY----KATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------ERFQ--- 71 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~~--- 71 (206)
.-.|+|+-+|..|.|||||+..|++-.+.... .++.......+...-.|..+.+++.||.|- +.+.
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV 119 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV 119 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence 34699999999999999999999987765433 333343444444445677889999999981 1111
Q ss_pred --------cchhh---------hh--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 72 --------SLGVA---------FY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 72 --------~~~~~---------~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
..... .+ ...|+.++.+.++. +++..+.- ..+..+.. ++.+|-|+.|.|....
T Consensus 120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDL---vtmk~Lds----kVNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDL---VTMKKLDS----KVNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHH---HHHHHHhh----hhhhHHHHHHhhhhhH
Confidence 11110 11 34788999998874 23333221 11122221 5677888889997654
No 382
>PRK13796 GTPase YqeH; Provisional
Probab=98.45 E-value=1.7e-06 Score=67.77 Aligned_cols=96 Identities=22% Similarity=0.250 Sum_probs=59.5
Q ss_pred hhccchhhhhccCc-EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc-ccccHHHHHHHH
Q 028647 69 RFQSLGVAFYRGAD-CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-RVVSEKKARAWC 146 (206)
Q Consensus 69 ~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~ 146 (206)
.+.... ..+...+ .+++|+|+.+.. ..|...+..... +.|+++|+||+|+.+... .....+....+.
T Consensus 58 ~~~~~l-~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-----~kpviLViNK~DLl~~~~~~~~i~~~l~~~~ 126 (365)
T PRK13796 58 DFLKLL-NGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-----NNPVLLVGNKADLLPKSVKKNKVKNWLRQEA 126 (365)
T ss_pred HHHHHH-HhhcccCcEEEEEEECccCC-----CchhHHHHHHhC-----CCCEEEEEEchhhCCCccCHHHHHHHHHHHH
Confidence 344433 3344455 999999998743 223333333322 569999999999975321 111122223334
Q ss_pred HhcCC--CcEEEeeccCCCCHHHHHHHHHHH
Q 028647 147 ASKGN--IPYFETSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 147 ~~~~~--~~~~~~S~~~~~~i~~l~~~l~~~ 175 (206)
...+. ..++.+||+++.|++++++.|.+.
T Consensus 127 k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 127 KELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred HhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 44441 268999999999999999999765
No 383
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=1.2e-06 Score=69.34 Aligned_cols=121 Identities=19% Similarity=0.268 Sum_probs=79.5
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCC------------CCC--CCCCccceeEEEEEEE----------------
Q 028647 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKK------------FSN--QYKATIGADFLTKEVQ---------------- 51 (206)
Q Consensus 2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~------------~~~--~~~~~~~~~~~~~~~~---------------- 51 (206)
+.+..+..++-|+.+..-|||||...|..+. |.. ..+...+.++....++
T Consensus 13 M~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~ 92 (842)
T KOG0469|consen 13 MDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE 92 (842)
T ss_pred hccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence 3466778899999999999999999987421 111 1111222233222222
Q ss_pred eCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647 52 FEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (206)
Q Consensus 52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (206)
-++..+.+.++|.||+-.|.+....+++-.|+.++|+|.-+.--.++---+.+.+-. .+.-++++||+|.+
T Consensus 93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E--------RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE--------RIKPVLVMNKMDRA 163 (842)
T ss_pred CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh--------hccceEEeehhhHH
Confidence 244567899999999999999999999999999999998764322221111122211 34446789999964
No 384
>PRK12288 GTPase RsgA; Reviewed
Probab=98.42 E-value=7.3e-07 Score=69.14 Aligned_cols=58 Identities=24% Similarity=0.311 Sum_probs=34.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCC------CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc
Q 028647 11 VIILGDSGVGKTSLMNQYVNKKFSN------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (206)
++++|.+|+|||||+|+|....... ....+.-++....-+.+.+.. .++||||..++.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 6899999999999999999754321 111111112222223333222 489999976554
No 385
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=7e-07 Score=68.71 Aligned_cols=160 Identities=18% Similarity=0.197 Sum_probs=96.7
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCC----------C---------------------CCCCCCccceeEEEEEEEeC
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK----------F---------------------SNQYKATIGADFLTKEVQFE 53 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~----------~---------------------~~~~~~~~~~~~~~~~~~~~ 53 (206)
.+.++++.++|+..+||||+-..+.... | ........+.......+...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 4678999999999999999877654210 0 00111111111111222222
Q ss_pred CeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChh---hHHHHHHHHH-HHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK---SFDNLNNWRE-EFLIQASPSDPDNFPFVVLGNKIDV 129 (206)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl 129 (206)
.-.+++.|.||+..|-..+..-+.++|..++|+++...+ .|+.-.+... .++..... ....|+++||+|-
T Consensus 156 --~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g----v~~lVv~vNKMdd 229 (501)
T KOG0459|consen 156 --NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG----VKHLIVLINKMDD 229 (501)
T ss_pred --ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc----cceEEEEEEeccC
Confidence 245789999999999988888889999999999885422 1222211111 12222111 3458999999996
Q ss_pred CCCCccc----ccHHHHHHHHHhc-----CCCcEEEeeccCCCCHHHHHH
Q 028647 130 DGGNSRV----VSEKKARAWCASK-----GNIPYFETSAKEGINVEEAFQ 170 (206)
Q Consensus 130 ~~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i~~l~~ 170 (206)
+..+-.. ...+.+..|.... ....++++|..+|.++.+..+
T Consensus 230 PtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 230 PTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred CccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 6433122 2333444444432 346799999999999988664
No 386
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=1.7e-06 Score=75.67 Aligned_cols=114 Identities=23% Similarity=0.265 Sum_probs=64.1
Q ss_pred EEEcCCCCCHHHHHHHHhcC-CCCCCCCCcc--ceeEEEEEEEeCCeEEEEEEEeCCC----h----hhhccchhhhh--
Q 028647 12 IILGDSGVGKTSLMNQYVNK-KFSNQYKATI--GADFLTKEVQFEDRLFTLQIWDTAG----Q----ERFQSLGVAFY-- 78 (206)
Q Consensus 12 ~viG~~~~GKStli~~l~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~g----~----~~~~~~~~~~~-- 78 (206)
+|||++|+||||++..--.. .+........ +..-..+...+.+.. .++||.| + +.-...|..++
T Consensus 129 ~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~dea---VlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 129 MVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTDEA---VLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred EEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcccccce---EEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 79999999999997543221 1111111111 000112233444443 5889999 2 12233444442
Q ss_pred -------ccCcEEEEEEECCCh-----hhH----HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 79 -------RGADCCVLVYDVNSM-----KSF----DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 79 -------~~~d~~i~v~d~~~~-----~s~----~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
+-.|++|+.+|+.+- ... ..+..-+.++...+.. ..||++++||.|+...
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~----~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA----RLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc----CCceEEEEeccccccc
Confidence 348999999998751 111 1122334445444443 7899999999999875
No 387
>PRK13796 GTPase YqeH; Provisional
Probab=98.37 E-value=7.5e-07 Score=69.77 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=36.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFS------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (206)
.++.|+|.+|+|||||+|+|...... ....|++| .....+.+++. ..++||||.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT--~~~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTT--LDKIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcc--ceeEEEEcCCC---cEEEECCCc
Confidence 47999999999999999999864311 22333333 33444444443 368999995
No 388
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.36 E-value=1e-06 Score=65.26 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|++|+|||||+|+|....
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 67899999999999999998753
No 389
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.36 E-value=8.8e-07 Score=66.31 Aligned_cols=59 Identities=24% Similarity=0.299 Sum_probs=37.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC------CCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (206)
..+++|++|+|||||+|+|.... .......+.-++.....+.+.+.. .++||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 46899999999999999998632 122222333233345555564333 389999976544
No 390
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.36 E-value=1.2e-06 Score=68.45 Aligned_cols=55 Identities=24% Similarity=0.362 Sum_probs=37.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC------CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKF------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (206)
.+++++|.+|+|||||+|+|.+... .....+.+| .....+.+++. +.++||||..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT--~~~~~~~~~~~---~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTT--LDLIEIPLDDG---HSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeE--eeEEEEEeCCC---CEEEECCCCC
Confidence 5899999999999999999997532 223333333 33344444332 4699999943
No 391
>PRK12289 GTPase RsgA; Reviewed
Probab=98.32 E-value=1.5e-06 Score=67.51 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=33.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCC-CCCCc-----cceeEEEEEEEeCCeEEEEEEEeCCChh
Q 028647 11 VIILGDSGVGKTSLMNQYVNKKFSN-QYKAT-----IGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (206)
++|+|++|+|||||+|.|....... ...+. ..++.....+...+.. .++||||..
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~ 235 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFN 235 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcc
Confidence 7999999999999999999654221 11111 1112222333343332 589999964
No 392
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.31 E-value=2.7e-05 Score=59.75 Aligned_cols=99 Identities=19% Similarity=0.138 Sum_probs=53.9
Q ss_pred EEEEEEeCCChhhhccchhhhh--------ccCcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 028647 57 FTLQIWDTAGQERFQSLGVAFY--------RGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKI 127 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (206)
+...++++.|...-......+. -..|+++-|+|+.+-..... ....+..-+ ...-+|++||+
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi---------a~AD~ivlNK~ 155 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL---------AFADVIVLNKT 155 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH---------HhCcEEEEecc
Confidence 4466788888332222222221 23688999999986432121 222222211 22348999999
Q ss_pred CCCCCCcccccHHHHHHHHHh-cCCCcEEEeeccCCCCHHHHH
Q 028647 128 DVDGGNSRVVSEKKARAWCAS-KGNIPYFETSAKEGINVEEAF 169 (206)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i~~l~ 169 (206)
|+..+. . .+..+..... .+.++++.++.. +....+++
T Consensus 156 Dlv~~~---~-l~~l~~~l~~lnp~A~i~~~~~~-~~~~~~ll 193 (323)
T COG0523 156 DLVDAE---E-LEALEARLRKLNPRARIIETSYG-DVDLAELL 193 (323)
T ss_pred cCCCHH---H-HHHHHHHHHHhCCCCeEEEcccc-CCCHHHhh
Confidence 999862 2 4444444444 456788888874 33343333
No 393
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.29 E-value=5.4e-07 Score=64.55 Aligned_cols=111 Identities=12% Similarity=0.040 Sum_probs=61.6
Q ss_pred EEEEEeCCChhhhcc------chhhhhccCcEEEEEEECCC------hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe
Q 028647 58 TLQIWDTAGQERFQS------LGVAFYRGADCCVLVYDVNS------MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGN 125 (206)
Q Consensus 58 ~~~i~D~~g~~~~~~------~~~~~~~~~d~~i~v~d~~~------~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 125 (206)
...++|+|||=++.. .....++..+.-+.++.+.| |..+-. .++..+...+.- ..|-+=|+.
T Consensus 98 ~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl~m----elphVNvlS 171 (290)
T KOG1533|consen 98 HYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATMLHM----ELPHVNVLS 171 (290)
T ss_pred cEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHHhh----cccchhhhh
Confidence 467899999644322 22234445676666666554 443322 222222222221 568888999
Q ss_pred CCCCCCCCc--------------------------c----cccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHH
Q 028647 126 KIDVDGGNS--------------------------R----VVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174 (206)
Q Consensus 126 K~Dl~~~~~--------------------------~----~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~ 174 (206)
|+|+..... + ....+.+..+.+.++-+.|...+..+.+.+-++...|-+
T Consensus 172 K~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~IDk 250 (290)
T KOG1533|consen 172 KADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTIDK 250 (290)
T ss_pred HhHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHHHh
Confidence 999854321 0 123344555566666566777777776777776666544
No 394
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.29 E-value=9.6e-06 Score=58.00 Aligned_cols=85 Identities=14% Similarity=0.087 Sum_probs=46.1
Q ss_pred EEEEEEeCCChhhhcc----chhhhh--ccCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647 57 FTLQIWDTAGQERFQS----LGVAFY--RGADCCVLVYDVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 129 (206)
+.+.++||+|...... ....+. ...+-+++|++++.. +..+.+..+ .... + +--+++||.|-
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~----~~~~------~-~~~lIlTKlDe 152 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF----YEAF------G-IDGLILTKLDE 152 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH----HHHS------S-TCEEEEESTTS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH----hhcc------c-CceEEEEeecC
Confidence 4578999999443322 222222 257889999999854 333323222 2222 1 23567999995
Q ss_pred CCCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647 130 DGGNSRVVSEKKARAWCASKGNIPYFETSA 159 (206)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 159 (206)
... .-.+..+....+ .|+-.++.
T Consensus 153 t~~------~G~~l~~~~~~~-~Pi~~it~ 175 (196)
T PF00448_consen 153 TAR------LGALLSLAYESG-LPISYITT 175 (196)
T ss_dssp SST------THHHHHHHHHHT-SEEEEEES
T ss_pred CCC------cccceeHHHHhC-CCeEEEEC
Confidence 443 334444555555 66666653
No 395
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.28 E-value=4.8e-06 Score=58.00 Aligned_cols=134 Identities=22% Similarity=0.313 Sum_probs=62.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeC-CCh---------------------
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT-AGQ--------------------- 67 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~g~--------------------- 67 (206)
+|++.|++|+||||++++++..--.. ...-..++...+.-.+...-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~---~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK---GLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT---CGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc---CCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999987532100 11112233334444444455555555 221
Q ss_pred -hhhccchhhh----hccCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC-CCCCCCcccccHH
Q 028647 68 -ERFQSLGVAF----YRGADCCVLVYDVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI-DVDGGNSRVVSEK 140 (206)
Q Consensus 68 -~~~~~~~~~~----~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~-Dl~~~~~~~~~~~ 140 (206)
+.+....... +..+| ++|+|--.+ |. ....|...+...+.. +.|++.++-+. +. .
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl--~~~~F~~~v~~~l~s----~~~vi~vv~~~~~~----------~ 139 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL--KSPGFREAVEKLLDS----NKPVIGVVHKRSDN----------P 139 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC--C-CHHHHHHHHHHCT----TSEEEEE--SS--S----------C
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh--cCHHHHHHHHHHHcC----CCcEEEEEecCCCc----------H
Confidence 1122211112 23344 777776542 21 112333444444442 67888888766 31 1
Q ss_pred HHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 141 KARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 141 ~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
.++++....+ ..++.++..+.+.+
T Consensus 140 ~l~~i~~~~~-~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 140 FLEEIKRRPD-VKIFEVTEENRDAL 163 (168)
T ss_dssp CHHHHHTTTT-SEEEE--TTTCCCH
T ss_pred HHHHHHhCCC-cEEEEeChhHHhhH
Confidence 2233434444 77888877766554
No 396
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.27 E-value=7.4e-06 Score=55.92 Aligned_cols=58 Identities=22% Similarity=0.207 Sum_probs=36.4
Q ss_pred EEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 028647 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (206)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (206)
.+.+.|+||+|.. .....++..+|.++++....-.+... +.+ ..++ ...-++++||+|
T Consensus 91 ~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~-~~k--~~~~---------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQ-AIK--AGIM---------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHH-Hhh--hhHh---------hhcCEEEEeCCC
Confidence 3568899998854 22345888899999999876222211 111 1222 234489999998
No 397
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.25 E-value=2.3e-05 Score=54.96 Aligned_cols=66 Identities=24% Similarity=0.158 Sum_probs=37.8
Q ss_pred EEEEEEeCCChhhhc----cchhhhh--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647 57 FTLQIWDTAGQERFQ----SLGVAFY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (206)
..+.++|++|..... .....+. ...+.+++|+|+..... .......+.... + ...+|+||.|..
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~------~-~~~viltk~D~~ 152 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL------G-ITGVILTKLDGD 152 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC------C-CCEEEEECCcCC
Confidence 347789999964222 2122222 24899999999875432 223333333222 2 256788999976
Q ss_pred CC
Q 028647 131 GG 132 (206)
Q Consensus 131 ~~ 132 (206)
..
T Consensus 153 ~~ 154 (173)
T cd03115 153 AR 154 (173)
T ss_pred CC
Confidence 54
No 398
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.22 E-value=2.7e-05 Score=60.83 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
.-.++++|++|+||||++.+|..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999875
No 399
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.21 E-value=5.5e-06 Score=58.42 Aligned_cols=87 Identities=20% Similarity=0.178 Sum_probs=43.1
Q ss_pred EEEEEEeCCChhhhccc--hh---hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 028647 57 FTLQIWDTAGQERFQSL--GV---AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~~~--~~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (206)
....++.+.|-..-... .. ...-..+.++.|+|+.+-.........+...+ ...-++++||+|+.+
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi---------~~ADvIvlnK~D~~~ 155 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQI---------AFADVIVLNKIDLVS 155 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHH---------CT-SEEEEE-GGGHH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcc---------hhcCEEEEeccccCC
Confidence 44567788873322222 01 11224789999999976433333333332222 223489999999876
Q ss_pred CCcccccHHHHHHHHHhc-CCCcEE
Q 028647 132 GNSRVVSEKKARAWCASK-GNIPYF 155 (206)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~-~~~~~~ 155 (206)
.. ...+..++..+.. +.++++
T Consensus 156 ~~---~~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 156 DE---QKIERVREMIRELNPKAPIV 177 (178)
T ss_dssp HH-----HHHHHHHHHHH-TTSEEE
T ss_pred hh---hHHHHHHHHHHHHCCCCEEe
Confidence 42 1224444444433 334443
No 400
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.20 E-value=1.8e-05 Score=59.36 Aligned_cols=94 Identities=21% Similarity=0.149 Sum_probs=66.4
Q ss_pred cchhhhhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC
Q 028647 72 SLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG 150 (206)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (206)
.+.+-.+.+.|-+++|+.+.+|+ +...+.+++-..... ++.-+|++||+||........ ++.......++
T Consensus 71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~-------gi~pvIvlnK~DL~~~~~~~~--~~~~~~y~~~g 141 (301)
T COG1162 71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG-------GIEPVIVLNKIDLLDDEEAAV--KELLREYEDIG 141 (301)
T ss_pred ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc-------CCcEEEEEEccccCcchHHHH--HHHHHHHHhCC
Confidence 33444556688888888888875 444455554443322 677788899999998643333 55666666776
Q ss_pred CCcEEEeeccCCCCHHHHHHHHHHH
Q 028647 151 NIPYFETSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 151 ~~~~~~~S~~~~~~i~~l~~~l~~~ 175 (206)
.+++.+|++++++++++.+.+...
T Consensus 142 -y~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 142 -YPVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred -eeEEEecCcCcccHHHHHHHhcCC
Confidence 899999999999999998877554
No 401
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.20 E-value=4.9e-05 Score=58.46 Aligned_cols=96 Identities=17% Similarity=0.229 Sum_probs=50.0
Q ss_pred EEEEEEeCCChhhhccchhhhhc--------cCcEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 028647 57 FTLQIWDTAGQERFQSLGVAFYR--------GADCCVLVYDVNSMKSF-DNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (206)
....++++.|...-......+.. ..+.++.|+|+.+.... +.......++ ...-+||+||+
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi----------~~AD~IvlnK~ 160 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV----------GYADRILLTKT 160 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH----------HhCCEEEEecc
Confidence 34567888885433333333211 25889999999753221 1111111122 22348999999
Q ss_pred CCCCCCcccccHHHHHHHHHh-cCCCcEEEeeccCCCCHHHHH
Q 028647 128 DVDGGNSRVVSEKKARAWCAS-KGNIPYFETSAKEGINVEEAF 169 (206)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i~~l~ 169 (206)
|+... . +.+.+..+. .+.++++.++-- ......++
T Consensus 161 Dl~~~--~----~~~~~~l~~lnp~a~i~~~~~~-~v~~~~l~ 196 (318)
T PRK11537 161 DVAGE--A----EKLRERLARINARAPVYTVVHG-DIDLSLLF 196 (318)
T ss_pred ccCCH--H----HHHHHHHHHhCCCCEEEEeccC-CCCHHHHh
Confidence 98863 1 344444443 445667665422 23444444
No 402
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.19 E-value=1.1e-05 Score=64.18 Aligned_cols=86 Identities=23% Similarity=0.125 Sum_probs=47.1
Q ss_pred EEEEEEeCCChhhhccc----hhh--hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647 57 FTLQIWDTAGQERFQSL----GVA--FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (206)
+.+.|+||+|....... ... ..-..+.+++|+|+... +........+.... + ..-+|+||.|-.
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v------~-i~giIlTKlD~~ 252 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL------G-LTGVVLTKLDGD 252 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC------C-CCEEEEeCccCc
Confidence 45789999995332221 111 12347889999998754 23333334443222 1 236779999953
Q ss_pred CCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647 131 GGNSRVVSEKKARAWCASKGNIPYFETSA 159 (206)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 159 (206)
.. .-.+.......+ .|+.+++.
T Consensus 253 ~~------~G~~lsi~~~~~-~PI~fi~~ 274 (428)
T TIGR00959 253 AR------GGAALSVRSVTG-KPIKFIGV 274 (428)
T ss_pred cc------ccHHHHHHHHHC-cCEEEEeC
Confidence 32 112444445554 66666554
No 403
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.18 E-value=4.9e-06 Score=66.36 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHh
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~ 29 (206)
.+..|+++|++|+||||++..|.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 46789999999999999998875
No 404
>PRK10867 signal recognition particle protein; Provisional
Probab=98.16 E-value=1.4e-05 Score=63.65 Aligned_cols=86 Identities=23% Similarity=0.134 Sum_probs=45.8
Q ss_pred EEEEEEeCCChhhhcc----chhhh--hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647 57 FTLQIWDTAGQERFQS----LGVAF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (206)
+.+.|+||+|...... ....+ .-..+.+++|+|+... +........+.... + ..-+|+||.|-.
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~------~-i~giIlTKlD~~ 253 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL------G-LTGVILTKLDGD 253 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC------C-CCEEEEeCccCc
Confidence 4588999999432221 11111 1257788999998753 23333333333211 1 235778999953
Q ss_pred CCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647 131 GGNSRVVSEKKARAWCASKGNIPYFETSA 159 (206)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 159 (206)
... -.+.......+ .|+.+++.
T Consensus 254 ~rg------G~alsi~~~~~-~PI~fig~ 275 (433)
T PRK10867 254 ARG------GAALSIRAVTG-KPIKFIGT 275 (433)
T ss_pred ccc------cHHHHHHHHHC-cCEEEEeC
Confidence 321 12334444444 66666554
No 405
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.16 E-value=1e-05 Score=59.15 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=51.3
Q ss_pred EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChh-------hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-------SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 129 (206)
+.++.+|.+|+..-+..|...+....++|+|+..+.-. +-..+.+-+..+...-+......+.+|+.+||.|+
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 281 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence 55899999999999999999999999999999877411 11222222222222222222336789999999998
Q ss_pred CC
Q 028647 130 DG 131 (206)
Q Consensus 130 ~~ 131 (206)
..
T Consensus 282 la 283 (379)
T KOG0099|consen 282 LA 283 (379)
T ss_pred HH
Confidence 43
No 406
>PRK13695 putative NTPase; Provisional
Probab=98.14 E-value=0.00013 Score=51.25 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
++|+++|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998654
No 407
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.14 E-value=7.1e-06 Score=62.26 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=36.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCC------CCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQY------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (206)
-.++++|++|+|||||+|.|.+....... ..+..++.....+...+. ..++||||..++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 46899999999999999999875432111 111112222333444322 2489999976543
No 408
>PRK00098 GTPase RsgA; Reviewed
Probab=98.10 E-value=7.8e-06 Score=62.38 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
-.++++|++|+|||||+|.|.+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 358999999999999999998754
No 409
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.09 E-value=3e-06 Score=59.86 Aligned_cols=114 Identities=12% Similarity=0.156 Sum_probs=61.8
Q ss_pred EEEEeCCChhhhcc---chhhhh---cc---CcEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 028647 59 LQIWDTAGQERFQS---LGVAFY---RG---ADCCVLVYDVNS-MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (206)
Q Consensus 59 ~~i~D~~g~~~~~~---~~~~~~---~~---~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (206)
+.++|+|||.+... .....+ .. --++++++|..= -++...+...+..+...... .+|-|=|++|+|
T Consensus 100 ylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~l----E~P~INvlsKMD 175 (273)
T KOG1534|consen 100 YLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISL----EVPHINVLSKMD 175 (273)
T ss_pred EEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHh----cCcchhhhhHHH
Confidence 67899999755432 222222 11 224555665532 12222233333333333222 789999999999
Q ss_pred CCCCCccc---------------------------ccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647 129 VDGGNSRV---------------------------VSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 129 l~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~ 176 (206)
|....... ....-+..+...++-+.|++....+.++++.++..|-..+
T Consensus 176 Llk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 176 LLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred HhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 97641100 0001111122334446788888888888988888887665
No 410
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.08 E-value=6.8e-05 Score=58.75 Aligned_cols=22 Identities=27% Similarity=0.637 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHh
Q 028647 8 LLKVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~ 29 (206)
+..|+++|+.|+||||++.+|.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHH
Confidence 4689999999999999999985
No 411
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.08 E-value=5.9e-06 Score=65.61 Aligned_cols=55 Identities=24% Similarity=0.324 Sum_probs=41.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (206)
.+.|+++|.||+||||+||.|.+.+.. ...+|.|.+-.-.++.++. .+-+.|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~ls~---~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFLSP---SVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEcCC---CceecCCCC
Confidence 699999999999999999999987744 3344455444455555544 356889999
No 412
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.08 E-value=2.1e-05 Score=43.70 Aligned_cols=44 Identities=27% Similarity=0.239 Sum_probs=30.3
Q ss_pred cCcEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 028647 80 GADCCVLVYDVNS--MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (206)
Q Consensus 80 ~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (206)
-.++++|++|++. +-+.+.-..++.++...+. +.|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-----~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-----NKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-----TS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-----CCCEEEEEeccC
Confidence 3789999999986 4466666777888887776 789999999998
No 413
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=0.00012 Score=59.45 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
.-.|+|+|+.|+||||++.+|..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999988764
No 414
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.01 E-value=0.00012 Score=57.23 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~ 32 (206)
.-.|+++||.|+||||-+.+|....
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~ 227 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARY 227 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH
Confidence 5678999999999999998886543
No 415
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.99 E-value=6.1e-06 Score=63.55 Aligned_cols=57 Identities=26% Similarity=0.455 Sum_probs=43.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (206)
+..++++|+|-|++||||+||+|...... ......|.+...+.+..+. .+.|+|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C-~vg~~pGvT~smqeV~Ldk---~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKAC-NVGNVPGVTRSMQEVKLDK---KIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccc-cCCCCccchhhhhheeccC---CceeccCCc
Confidence 56799999999999999999999987653 2233444445556665555 468999999
No 416
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=0.00011 Score=58.33 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
.-.++++|+.|+||||++.+|..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 417
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.97 E-value=6.3e-05 Score=56.65 Aligned_cols=106 Identities=14% Similarity=0.260 Sum_probs=64.6
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC-----------------
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------------- 66 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------------- 66 (206)
+.....+++++|++|.|||+++++|........ .... ..+.+..+.+|.
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~~-------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DEDA-------------ERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCCC-------------ccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 445567899999999999999999997653321 1111 112333444443
Q ss_pred -------hhhhccchhhhhccCcEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q 028647 67 -------QERFQSLGVAFYRGADCCVLVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126 (206)
Q Consensus 67 -------~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 126 (206)
...........++...+-++++|--+. .+.......+..+....+.. ++|+|.|+++
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL---~ipiV~vGt~ 189 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL---QIPIVGVGTR 189 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc---CCCeEEeccH
Confidence 111122234567788999999997542 23333444555555444433 8899999876
No 418
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=7.4e-05 Score=54.39 Aligned_cols=116 Identities=16% Similarity=0.304 Sum_probs=71.3
Q ss_pred EEEEEEcCCCC--CHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEE--EEEEeCCChhhhccchhhhhccCcEE
Q 028647 9 LKVIILGDSGV--GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFT--LQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 9 ~~i~viG~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
..++|+|.+|+ ||.+|+.+|....+.....+...+.++..+ ++++.+. +.+-=.+--+++.-..........++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwt--id~kyysadi~lcishicde~~lpn~~~a~pl~a~ 82 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWT--IDNKYYSADINLCISHICDEKFLPNAEIAEPLQAF 82 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceE--ecceeeecceeEEeecccchhccCCcccccceeeE
Confidence 46789999999 999999999988877665555444444433 3333321 11111111111211122223446789
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
+++||++....+..++.|+..-..... + -.+.++||.|..+.
T Consensus 83 vmvfdlse~s~l~alqdwl~htdinsf-----d-illcignkvdrvph 124 (418)
T KOG4273|consen 83 VMVFDLSEKSGLDALQDWLPHTDINSF-----D-ILLCIGNKVDRVPH 124 (418)
T ss_pred EEEEeccchhhhHHHHhhccccccccc-----h-hheecccccccccc
Confidence 999999999889999998764321110 1 24577999998654
No 419
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.92 E-value=0.0003 Score=56.85 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
-.++++|+.|+||||++.+|..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 4689999999999999999874
No 420
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.91 E-value=9.5e-05 Score=49.93 Aligned_cols=106 Identities=19% Similarity=0.184 Sum_probs=59.3
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECC
Q 028647 12 IILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN 91 (206)
Q Consensus 12 ~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 91 (206)
..-|..|+||||+...+...-.. ......-.+.. .......+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAK-LGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 35578999999987665432100 00000000000 0000111567899999743 334457788999999999886
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647 92 SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (206)
Q Consensus 92 ~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 129 (206)
. .++......+..+..... ..++.+|+|+.+-
T Consensus 78 ~-~s~~~~~~~l~~l~~~~~-----~~~~~lVvN~~~~ 109 (139)
T cd02038 78 P-TSITDAYALIKKLAKQLR-----VLNFRVVVNRAES 109 (139)
T ss_pred h-hHHHHHHHHHHHHHHhcC-----CCCEEEEEeCCCC
Confidence 3 334444444444433221 4578899999974
No 421
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.89 E-value=0.00056 Score=53.23 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-.+|.|.-|||||||+++++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3578899999999999999853
No 422
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.86 E-value=0.0004 Score=54.80 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
+..|+++|++|+||||.+.+|..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988763
No 423
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.86 E-value=0.00043 Score=55.45 Aligned_cols=87 Identities=16% Similarity=0.103 Sum_probs=46.4
Q ss_pred EEEEEEeCCChhhhc----cchhhhhc---cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647 57 FTLQIWDTAGQERFQ----SLGVAFYR---GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 129 (206)
..+.|+||+|..... .....++. ...-+.+|++++... ..+......+ ... + +--+++||.|-
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f----~~~---~-~~~vI~TKlDe 369 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHF----SRL---P-LDGLIFTKLDE 369 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHh----CCC---C-CCEEEEecccc
Confidence 467899999954332 22333333 334677888886431 2222222222 211 1 23688999995
Q ss_pred CCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAK 160 (206)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (206)
... .-.+..+....+ .|+.+++.=
T Consensus 370 t~~------~G~i~~~~~~~~-lPv~yit~G 393 (424)
T PRK05703 370 TSS------LGSILSLLIESG-LPISYLTNG 393 (424)
T ss_pred ccc------ccHHHHHHHHHC-CCEEEEeCC
Confidence 432 334555555555 677666643
No 424
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.85 E-value=2.7e-05 Score=58.30 Aligned_cols=61 Identities=21% Similarity=0.323 Sum_probs=39.0
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCC------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (206)
....+++.|+|-||+|||||+|.+...... ....++.+..... .+.+.+.. .+.++||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~-~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSE-RIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehh-heEeccCC-ceEEecCCCc
Confidence 356799999999999999999987643221 2333443333322 13444443 3678999993
No 425
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=0.00062 Score=57.85 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
-.|+++|+.|+||||.+.+|..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHh
Confidence 4689999999999999999875
No 426
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=0.00015 Score=57.41 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
...++++|++||||||++.+|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999998864
No 427
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00054 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
.-.++++|+.|+||||++.++..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999988763
No 428
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.73 E-value=2.6e-05 Score=54.83 Aligned_cols=23 Identities=35% Similarity=0.795 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
++|+|+|+|||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 429
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.73 E-value=3e-05 Score=50.89 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 430
>PRK08118 topology modulation protein; Reviewed
Probab=97.68 E-value=3.7e-05 Score=53.59 Aligned_cols=23 Identities=39% Similarity=0.679 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
.+|+|+|++|||||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998864
No 431
>PRK07261 topology modulation protein; Provisional
Probab=97.65 E-value=4.2e-05 Score=53.58 Aligned_cols=23 Identities=35% Similarity=0.651 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
.+|+|+|++|||||||.+.|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998753
No 432
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.65 E-value=0.00033 Score=44.64 Aligned_cols=82 Identities=18% Similarity=0.210 Sum_probs=49.5
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647 11 VIILG-DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 11 i~viG-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (206)
|+|.| ..|+||||+...+...--. . +. ....++.+.. +.+.++|+|+... ......+..+|.++++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~-----~~--~vl~~d~d~~-~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-R-----GK--RVLLIDLDPQ-YDYIIIDTPPSLG--LLTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-C-----CC--cEEEEeCCCC-CCEEEEeCcCCCC--HHHHHHHHHCCEEEEecc
Confidence 56667 5699999998776532211 0 11 1112222222 5678999998642 233467778999999998
Q ss_pred CCChhhHHHHHHHHH
Q 028647 90 VNSMKSFDNLNNWRE 104 (206)
Q Consensus 90 ~~~~~s~~~~~~~~~ 104 (206)
.+ ..++....+++.
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 445555555544
No 433
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.62 E-value=0.0011 Score=49.83 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
.-+++++|++|+||||++..+..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 35899999999999999887753
No 434
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.59 E-value=5.7e-05 Score=51.07 Aligned_cols=21 Identities=29% Similarity=0.672 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028647 11 VIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
|+++|+||||||||++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998853
No 435
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.57 E-value=0.00044 Score=50.03 Aligned_cols=41 Identities=27% Similarity=0.335 Sum_probs=28.3
Q ss_pred hccCcEEEEEEECCChhhHHHH---HHHHHHHHhhcCCCCCCC-CcEEEEEeCCCC
Q 028647 78 YRGADCCVLVYDVNSMKSFDNL---NNWREEFLIQASPSDPDN-FPFVVLGNKIDV 129 (206)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl 129 (206)
.+++|.+++|+|++.. ++... .++..++ + .++.+|+||.|-
T Consensus 153 ~~~vD~vivVvDpS~~-sl~taeri~~L~~el----------g~k~i~~V~NKv~e 197 (255)
T COG3640 153 IEGVDLVIVVVDPSYK-SLRTAERIKELAEEL----------GIKRIFVVLNKVDE 197 (255)
T ss_pred ccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHh----------CCceEEEEEeeccc
Confidence 4679999999999843 33333 3333333 4 689999999994
No 436
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.56 E-value=0.00073 Score=42.08 Aligned_cols=69 Identities=20% Similarity=0.283 Sum_probs=43.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc-hhhhhccCcEEEEEEE
Q 028647 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-GVAFYRGADCCVLVYD 89 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~d~~i~v~d 89 (206)
+++.|..|+||||+...+...--. .+. .. ..++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~------~g~--~v--~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK------RGK--RV--LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------CCC--eE--EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999998887643211 011 11 1122 5678999985422221 2455667999999998
Q ss_pred CCCh
Q 028647 90 VNSM 93 (206)
Q Consensus 90 ~~~~ 93 (206)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 8754
No 437
>PF05729 NACHT: NACHT domain
Probab=97.56 E-value=0.00024 Score=49.10 Aligned_cols=22 Identities=27% Similarity=0.595 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-++|.|++|+||||++.+++..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 3789999999999999998754
No 438
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.56 E-value=0.00078 Score=45.19 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~ 32 (206)
.-.+++.|++|+|||++++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999988754
No 439
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.56 E-value=7.2e-05 Score=53.43 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++||+|||||||++.+-.-
T Consensus 30 vv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5799999999999999987653
No 440
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.55 E-value=3.9e-05 Score=59.34 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=49.5
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEeCCeEEEEEEEeCCChh--hhccchhhhhcc
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE--RFQSLGVAFYRG 80 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--~~~~~~~~~~~~ 80 (206)
.+++.+.|+++|.||+||||+||.|....+... ..++.+.-+. .+. -.-.+-++|+||.= ...+.....+
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQ--YIt---LmkrIfLIDcPGvVyps~dset~ivL-- 375 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQ--YIT---LMKRIFLIDCPGVVYPSSDSETDIVL-- 375 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHH--HHH---HHhceeEecCCCccCCCCCchHHHHh--
Confidence 356789999999999999999999998876522 2333221111 011 11246789999931 1123333332
Q ss_pred CcEEEEEEECCChh
Q 028647 81 ADCCVLVYDVNSMK 94 (206)
Q Consensus 81 ~d~~i~v~d~~~~~ 94 (206)
-+++=|-.+.+|+
T Consensus 376 -kGvVRVenv~~pe 388 (572)
T KOG2423|consen 376 -KGVVRVENVKNPE 388 (572)
T ss_pred -hceeeeeecCCHH
Confidence 3555566666654
No 441
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.54 E-value=0.00037 Score=48.80 Aligned_cols=44 Identities=25% Similarity=0.207 Sum_probs=27.5
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 028647 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (206)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (206)
|++++|+|+.++.+... ..+...+. .... +.|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~--l~~~---~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL--QAGG---NKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH--hccC---CCCEEEEEehhhcCC
Confidence 78999999988643221 12222211 1111 679999999999975
No 442
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.53 E-value=9.7e-05 Score=43.42 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028647 11 VIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998865
No 443
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.52 E-value=8.9e-05 Score=58.19 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=21.7
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHh
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~ 29 (206)
.+++..|+++|-.||||||...+|.
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA 121 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLA 121 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHH
Confidence 3567889999999999999988875
No 444
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.52 E-value=5.6e-05 Score=52.69 Aligned_cols=24 Identities=33% Similarity=0.689 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
.=+++.||+|+||||+++.|....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999765
No 445
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.0008 Score=53.29 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~ 32 (206)
.-+|+|+||.|+|||||+.-|++.-
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCC
Confidence 3589999999999999998887653
No 446
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.48 E-value=9.3e-05 Score=53.64 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-++|+||+|||||||++-+..-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 37999999999999999887543
No 447
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.48 E-value=0.00014 Score=52.59 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=23.1
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
+++..-|+|+|++|||||||++.+.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 455678999999999999999998753
No 448
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.47 E-value=0.00014 Score=41.41 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
..+|.|+.||||||++..+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999988764
No 449
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.46 E-value=2.8e-05 Score=65.03 Aligned_cols=123 Identities=16% Similarity=0.199 Sum_probs=74.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEE----------------------------------
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQ---------------------------------- 51 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 51 (206)
-...+|+|+|..++||||.++.+.+..+.+......+..+-...+.
T Consensus 27 i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e 106 (657)
T KOG0446|consen 27 IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE 106 (657)
T ss_pred ccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence 3457899999999999999999998655433222211111111100
Q ss_pred --------------------eCCeEEEEEEEeCCC-------------hhhhccchhhhhccCcEEEEEEECCChhhHHH
Q 028647 52 --------------------FEDRLFTLQIWDTAG-------------QERFQSLGVAFYRGADCCVLVYDVNSMKSFDN 98 (206)
Q Consensus 52 --------------------~~~~~~~~~i~D~~g-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 98 (206)
+......++++|.|| ......+...++...+.+|+.+...+-+- .+
T Consensus 107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~-at 185 (657)
T KOG0446|consen 107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDI-AT 185 (657)
T ss_pred HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhh-hc
Confidence 001112378899999 23445667788888899999888765221 11
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc
Q 028647 99 LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS 134 (206)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (206)
..++. .....++.+..++.|++|.|+.+...
T Consensus 186 -s~alk----iarevDp~g~RTigvitK~DlmdkGt 216 (657)
T KOG0446|consen 186 -SPALV----VAREVDPGGSRTLEVITKFDFMDKGT 216 (657)
T ss_pred -CHHHH----HHHhhCCCccchhHHhhhHHhhhcCC
Confidence 11222 22333444778899999999876543
No 450
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.00011 Score=53.66 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028647 11 VIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
|+++|++|||||||++-+.+-
T Consensus 32 vsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999988763
No 451
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.45 E-value=0.00012 Score=55.55 Aligned_cols=25 Identities=24% Similarity=0.550 Sum_probs=22.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
..++.|+++|-.|+||||-+.+|..
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~ 161 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAK 161 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHH
Confidence 4589999999999999999988753
No 452
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.44 E-value=0.00076 Score=44.94 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
-.|++.|+.|+|||||++.+...-
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998753
No 453
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.44 E-value=7.9e-05 Score=51.70 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999865
No 454
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.43 E-value=0.00016 Score=52.17 Aligned_cols=28 Identities=36% Similarity=0.548 Sum_probs=23.1
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCC
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~ 32 (206)
..+..-|+|+|++|||||||++.|....
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 3456778899999999999999997543
No 455
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.42 E-value=0.0011 Score=51.56 Aligned_cols=84 Identities=19% Similarity=0.117 Sum_probs=53.0
Q ss_pred hhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHH
Q 028647 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWC 146 (206)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (206)
...|.......+..+|++|.|+|+.||.+-.. .+.-..+...-. +...|+|+||+|+.+ ++...+.+..+.
T Consensus 133 ~kaY~ke~rkvve~sDVVleVlDARDPlgtR~-~~vE~~V~~~~g-----nKkLILVLNK~DLVP---rEv~e~Wl~YLr 203 (435)
T KOG2484|consen 133 KKAYDKEFRKVVEASDVVLEVLDARDPLGTRC-PEVEEAVLQAHG-----NKKLILVLNKIDLVP---REVVEKWLVYLR 203 (435)
T ss_pred HHHHHHHHHHHHhhhheEEEeeeccCCCCCCC-hhHHHHHHhccC-----CceEEEEeehhccCC---HHHHHHHHHHHH
Confidence 34455666677788999999999999875222 122122221111 478999999999987 555566666666
Q ss_pred HhcCCCcEEEeecc
Q 028647 147 ASKGNIPYFETSAK 160 (206)
Q Consensus 147 ~~~~~~~~~~~S~~ 160 (206)
++++ .-.+..|..
T Consensus 204 ~~~p-tv~fkast~ 216 (435)
T KOG2484|consen 204 REGP-TVAFKASTQ 216 (435)
T ss_pred hhCC-cceeecccc
Confidence 6666 333444433
No 456
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.42 E-value=0.013 Score=40.52 Aligned_cols=140 Identities=11% Similarity=0.064 Sum_probs=93.0
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEe-CCChhhhccchhhhhccCcE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWD-TAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D-~~g~~~~~~~~~~~~~~~d~ 83 (206)
..+...|+++|..+.++..|...+....- + +. ++++.-- .|=. ......=...|.
T Consensus 12 ~ln~atiLLVg~e~~~~~~LA~a~l~~~~------~----~~----------l~Vh~a~sLPLp----~e~~~lRprIDl 67 (176)
T PF11111_consen 12 ELNTATILLVGTEEALLQQLAEAMLEEDK------E----FK----------LKVHLAKSLPLP----SENNNLRPRIDL 67 (176)
T ss_pred CcceeEEEEecccHHHHHHHHHHHHhhcc------c----ee----------EEEEEeccCCCc----ccccCCCceeEE
Confidence 34578999999999999999999885320 0 10 1111110 1100 111112346899
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI 163 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (206)
++|++|.....++..+..-+..+-..+.. + .++++.+-....+. ..+..+++.+++..++ .+++.+.-...+
T Consensus 68 IVFvinl~sk~SL~~ve~SL~~vd~~ffl----G-KVCfl~t~a~~~~~--~sv~~~~V~kla~~y~-~plL~~~le~~~ 139 (176)
T PF11111_consen 68 IVFVINLHSKYSLQSVEASLSHVDPSFFL----G-KVCFLATNAGRESH--CSVHPNEVRKLAATYN-SPLLFADLENEE 139 (176)
T ss_pred EEEEEecCCcccHHHHHHHHhhCChhhhc----c-ceEEEEcCCCcccc--cccCHHHHHHHHHHhC-CCEEEeecccch
Confidence 99999999999988887776665433321 3 45566655554433 6688999999999998 999999888887
Q ss_pred CHHHHHHHHHHHH
Q 028647 164 NVEEAFQCIAKNA 176 (206)
Q Consensus 164 ~i~~l~~~l~~~~ 176 (206)
+...+-+.|++.+
T Consensus 140 ~~~~lAqRLL~~l 152 (176)
T PF11111_consen 140 GRTSLAQRLLRML 152 (176)
T ss_pred HHHHHHHHHHHHH
Confidence 7766666666544
No 457
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.41 E-value=0.0018 Score=53.11 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-+++.||+|+||||.++.|...
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4677999999999999998864
No 458
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.40 E-value=0.0019 Score=45.51 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|+|||||++.+.+-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 67999999999999999888753
No 459
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.40 E-value=0.00016 Score=51.27 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~ 32 (206)
+.=|+|+||+|||||||+++|....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3558999999999999999998753
No 460
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.39 E-value=0.00022 Score=48.06 Aligned_cols=21 Identities=33% Similarity=0.806 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028647 11 VIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
|+|+|++|||||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 461
>PRK06217 hypothetical protein; Validated
Probab=97.39 E-value=0.00017 Score=51.11 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
.+|+|+|.+||||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998864
No 462
>PRK03839 putative kinase; Provisional
Probab=97.38 E-value=0.00015 Score=51.19 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
+|+++|+|||||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 463
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.38 E-value=0.00068 Score=52.35 Aligned_cols=95 Identities=19% Similarity=0.100 Sum_probs=64.9
Q ss_pred EeCCCh-hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHH
Q 028647 62 WDTAGQ-ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK 140 (206)
Q Consensus 62 ~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 140 (206)
-+.||+ ..+.......+...|+++-|+|+.+|.+.... .+..... +.|.++|+||.|+.+. ....+
T Consensus 15 ~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~-----~l~~~v~-----~k~~i~vlNK~DL~~~---~~~~~ 81 (322)
T COG1161 15 QWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP-----ELERIVK-----EKPKLLVLNKADLAPK---EVTKK 81 (322)
T ss_pred cCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc-----cHHHHHc-----cCCcEEEEehhhcCCH---HHHHH
Confidence 345664 45666777888999999999999998653322 1222222 5566999999999874 33444
Q ss_pred HHHHHHHhcCCCcEEEeeccCCCCHHHHHH
Q 028647 141 KARAWCASKGNIPYFETSAKEGINVEEAFQ 170 (206)
Q Consensus 141 ~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~ 170 (206)
..+.+.+..+ ...+.+++..+.+...+..
T Consensus 82 W~~~~~~~~~-~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 82 WKKYFKKEEG-IKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred HHHHHHhcCC-CccEEEEeecccCccchHH
Confidence 4444544443 7788899998888777774
No 464
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.36 E-value=0.00016 Score=52.99 Aligned_cols=26 Identities=31% Similarity=0.655 Sum_probs=22.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
..+++++|+|++|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999888754
No 465
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.36 E-value=0.00018 Score=52.66 Aligned_cols=26 Identities=31% Similarity=0.612 Sum_probs=22.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
..+++|+|+|+|||||||+...|...
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44588999999999999999988653
No 466
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.34 E-value=0.00018 Score=47.52 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028647 11 VIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998865
No 467
>PRK14530 adenylate kinase; Provisional
Probab=97.33 E-value=0.00019 Score=52.17 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 468
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.33 E-value=0.0002 Score=48.01 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 57999999999999999888653
No 469
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.31 E-value=0.00023 Score=48.07 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.|+|+|+.|||||||+..|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 470
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.31 E-value=0.00022 Score=47.32 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028647 11 VIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999865
No 471
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.28 E-value=0.00025 Score=50.32 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++|+|++|||||||++.|....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999997643
No 472
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.28 E-value=0.00026 Score=51.19 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
+.+.|+|.|++|||||||.+.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998764
No 473
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.27 E-value=0.00026 Score=49.39 Aligned_cols=21 Identities=48% Similarity=0.713 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
.++|+|++|+|||||+|-+.+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred EEEEECCCCccHHHHHHHHHh
Confidence 689999999999999998765
No 474
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.27 E-value=0.00028 Score=47.00 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKF 33 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~ 33 (206)
-.++++|++|+||||++..+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999987543
No 475
>PRK14532 adenylate kinase; Provisional
Probab=97.27 E-value=0.00024 Score=50.53 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
++|+++|+|||||||+..+|...
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998753
No 476
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.27 E-value=0.00026 Score=45.19 Aligned_cols=21 Identities=48% Similarity=0.800 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHh
Q 028647 9 LKVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~ 29 (206)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 357999999999999998875
No 477
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.27 E-value=0.0012 Score=47.31 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028647 11 VIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~ 32 (206)
|+|.|++||||||+++.+....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887643
No 478
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.25 E-value=0.00026 Score=49.84 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++|+|++||||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 479
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.0012 Score=51.23 Aligned_cols=94 Identities=17% Similarity=0.262 Sum_probs=52.2
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcC----CCC------CCCCC-----------ccceeEEEEEE-------------
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNK----KFS------NQYKA-----------TIGADFLTKEV------------- 50 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~----~~~------~~~~~-----------~~~~~~~~~~~------------- 50 (206)
+.++-.|.++|-.|+||||.+.+|... .+. +...+ ..+..++....
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~ 177 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD 177 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence 344567899999999999998877431 110 00000 01111211111
Q ss_pred EeCCeEEEEEEEeCCChhhhc----cchhhh--hccCcEEEEEEECCChhhHHH
Q 028647 51 QFEDRLFTLQIWDTAGQERFQ----SLGVAF--YRGADCCVLVYDVNSMKSFDN 98 (206)
Q Consensus 51 ~~~~~~~~~~i~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~ 98 (206)
.+....+.+.|.||.|..... ...... +-+.|-+|+|.|++-....+.
T Consensus 178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~ 231 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA 231 (483)
T ss_pred HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH
Confidence 123445778999999943221 222211 235899999999986544333
No 480
>PRK13949 shikimate kinase; Provisional
Probab=97.23 E-value=0.00031 Score=49.05 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
.+|+|+|++||||||+.+.|...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999987753
No 481
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.23 E-value=0.00037 Score=48.62 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
..-+.|+|++|||||||++++...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 346899999999999999999864
No 482
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.22 E-value=0.00028 Score=49.98 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
..|+|+|++||||||+.+.|..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 483
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.00025 Score=50.70 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028647 11 VIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~ 29 (206)
.+++||+|+|||||++.|=
T Consensus 36 TAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 4899999999999998764
No 484
>PRK08233 hypothetical protein; Provisional
Probab=97.22 E-value=0.00034 Score=49.29 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
+-|+|.|++|||||||.+.|...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 67899999999999999999864
No 485
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.22 E-value=0.00029 Score=50.54 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028647 11 VIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
|+|.|++|||||||.+.|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 486
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.21 E-value=0.0013 Score=42.14 Aligned_cols=101 Identities=15% Similarity=0.082 Sum_probs=54.0
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCCh
Q 028647 14 LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSM 93 (206)
Q Consensus 14 iG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (206)
=+..|+||||+...|...-......... ....+.... ..+.++|+|+... ......+..+|.++++++.+.
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~-----l~d~d~~~~-~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~- 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVL-----LVDLDLQFG-DDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDL- 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEE-----EEECCCCCC-CCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCCh-
Confidence 3567899999876664321111001110 000000000 1578999998542 334556788999999997764
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q 028647 94 KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126 (206)
Q Consensus 94 ~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 126 (206)
.+......++..+...... +...+.+|+|+
T Consensus 77 ~s~~~~~~~~~~l~~~~~~---~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAKRLLELLRVLDYS---LPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHHcCCC---CcCceEEEecC
Confidence 4445555555554433211 12356777775
No 487
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.21 E-value=0.00032 Score=49.46 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-|+|+|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4799999999999999999874
No 488
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.19 E-value=0.0057 Score=43.01 Aligned_cols=84 Identities=24% Similarity=0.280 Sum_probs=55.2
Q ss_pred EEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc
Q 028647 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR 135 (206)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (206)
.+.+.++|+|+... ......+..+|.+++++..+.. +...+..++..+... +.|+.+|+||.|....
T Consensus 92 ~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~-------~~~~~vV~N~~~~~~~--- 158 (179)
T cd03110 92 GAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF-------GIPVGVVINKYDLNDE--- 158 (179)
T ss_pred CCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc-------CCCEEEEEeCCCCCcc---
Confidence 46789999997532 2345567889999999988743 444555554444321 5678999999996432
Q ss_pred cccHHHHHHHHHhcCCCcEE
Q 028647 136 VVSEKKARAWCASKGNIPYF 155 (206)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~ 155 (206)
..++..++.+.++ .+++
T Consensus 159 --~~~~~~~~~~~~~-~~vl 175 (179)
T cd03110 159 --IAEEIEDYCEEEG-IPIL 175 (179)
T ss_pred --hHHHHHHHHHHcC-CCeE
Confidence 3455666777765 5554
No 489
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.19 E-value=0.0025 Score=43.73 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028647 11 VIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
++|.|++|+|||+++..+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 689999999999999988654
No 490
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.18 E-value=0.00032 Score=50.82 Aligned_cols=20 Identities=40% Similarity=0.708 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028647 11 VIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~ 30 (206)
|+++|++|+|||||++.+-+
T Consensus 33 VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 33 VAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 78999999999999998876
No 491
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.17 E-value=0.0019 Score=46.96 Aligned_cols=103 Identities=13% Similarity=0.194 Sum_probs=62.8
Q ss_pred EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc
Q 028647 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS 134 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (206)
+.+.|+|+.|... ......+..+|.+|+=.-.+..+.-+. ...|+.++.. ...+.+|.-|++|++.-..
T Consensus 84 ~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~----~~~~~ip~~Vl~Tr~~~~~--- 154 (231)
T PF07015_consen 84 FDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEK----AERRDIPAAVLFTRVPAAR--- 154 (231)
T ss_pred CCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHH----hhCCCCCeeEEEecCCcch---
Confidence 5678999998642 224455667999998776664333222 2233333332 2233799999999987432
Q ss_pred ccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHH
Q 028647 135 RVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQC 171 (206)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~ 171 (206)
.........++.. ..|++.+...+..-+..++..
T Consensus 155 ~~~~~~~~~e~~~---~lpvl~t~l~eR~Af~~m~~~ 188 (231)
T PF07015_consen 155 LTRAQRIISEQLE---SLPVLDTELHERDAFRAMFSR 188 (231)
T ss_pred hhHHHHHHHHHHh---cCCccccccccHHHHHHHHHh
Confidence 1122233334433 377899998888878777773
No 492
>PRK07429 phosphoribulokinase; Provisional
Probab=97.16 E-value=0.00049 Score=53.16 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=25.3
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
|......++.|+|.|++|||||||.+.|..
T Consensus 1 ~~~~~~~~~IIgI~G~SGSGKSTla~~L~~ 30 (327)
T PRK07429 1 MTSMPDRPVLLGVAGDSGCGKTTFLRGLAD 30 (327)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHh
Confidence 445566789999999999999999988874
No 493
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.00033 Score=47.06 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=22.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
....+|+|.|.||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 5568999999999999999999874
No 494
>PRK10646 ADP-binding protein; Provisional
Probab=97.16 E-value=0.0044 Score=42.31 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
--|++-|.-|+|||||++.+...-
T Consensus 29 ~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 29 TVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998653
No 495
>PRK06547 hypothetical protein; Provisional
Probab=97.16 E-value=0.00046 Score=48.31 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=22.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...+.|+|.|++||||||+.+.|...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678899999999999999999764
No 496
>PRK02496 adk adenylate kinase; Provisional
Probab=97.16 E-value=0.00043 Score=49.01 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
.+|+|+|+|||||||+.+.|...
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~ 24 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEH 24 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999988753
No 497
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.14 E-value=0.00036 Score=50.93 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028647 11 VIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
|+|.|++|||||||++.|...
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999999988754
No 498
>PRK14531 adenylate kinase; Provisional
Probab=97.14 E-value=0.00042 Score=49.07 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
.+|+++|+|||||||+...|...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988654
No 499
>PRK01889 GTPase RsgA; Reviewed
Probab=97.14 E-value=0.00054 Score=53.70 Aligned_cols=24 Identities=42% Similarity=0.740 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
-.++++|.+|+|||||+|.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 378999999999999999998643
No 500
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.14 E-value=0.00036 Score=49.72 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
+|+|+|+|||||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
Done!