Query 028647
Match_columns 206
No_of_seqs 150 out of 1818
Neff 10.7
Searched_HMMs 29240
Date Tue Mar 26 00:53:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028647.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028647hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 7.1E-42 2.4E-46 247.0 18.4 194 6-206 11-208 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 2.5E-37 8.6E-42 222.3 23.8 199 1-206 1-206 (206)
3 1vg8_A RAS-related protein RAB 100.0 5.9E-38 2E-42 225.6 20.2 203 1-206 1-207 (207)
4 2bov_A RAla, RAS-related prote 100.0 1.7E-35 5.9E-40 212.5 20.6 194 5-205 11-204 (206)
5 3cpj_B GTP-binding protein YPT 100.0 1.4E-34 4.6E-39 210.6 20.0 175 6-187 11-185 (223)
6 3tkl_A RAS-related protein RAB 100.0 7.4E-34 2.5E-38 202.5 23.5 174 4-184 12-185 (196)
7 3tw8_B RAS-related protein RAB 100.0 3.1E-34 1.1E-38 201.8 20.8 174 1-182 2-175 (181)
8 2fu5_C RAS-related protein RAB 100.0 6.9E-35 2.4E-39 205.8 17.0 174 1-181 1-174 (183)
9 2bme_A RAB4A, RAS-related prot 100.0 3.8E-34 1.3E-38 202.4 20.2 177 1-184 3-179 (186)
10 3kkq_A RAS-related protein M-R 100.0 1.3E-33 4.5E-38 199.2 22.8 170 2-178 12-182 (183)
11 1wms_A RAB-9, RAB9, RAS-relate 100.0 2E-33 6.8E-38 197.1 23.6 173 4-179 3-175 (177)
12 2efe_B Small GTP-binding prote 100.0 9.6E-34 3.3E-38 199.4 22.0 171 4-181 8-178 (181)
13 1ky3_A GTP-binding protein YPT 100.0 2.5E-34 8.4E-39 202.5 18.7 179 1-180 1-180 (182)
14 2ew1_A RAS-related protein RAB 100.0 5.8E-34 2E-38 204.0 20.5 172 4-182 22-193 (201)
15 2fn4_A P23, RAS-related protei 100.0 1.3E-33 4.4E-38 198.6 21.3 175 1-182 2-176 (181)
16 2a5j_A RAS-related protein RAB 100.0 1.1E-33 3.8E-38 201.0 20.9 171 4-181 17-187 (191)
17 1z0f_A RAB14, member RAS oncog 100.0 1.8E-33 6.2E-38 197.5 21.4 168 4-178 11-178 (179)
18 2il1_A RAB12; G-protein, GDP, 100.0 6.5E-34 2.2E-38 202.4 19.3 171 3-179 21-191 (192)
19 1x3s_A RAS-related protein RAB 100.0 2.8E-33 9.7E-38 199.3 22.6 172 2-180 9-180 (195)
20 3t5g_A GTP-binding protein RHE 100.0 2E-33 6.9E-38 197.9 21.4 170 5-181 3-172 (181)
21 2fg5_A RAB-22B, RAS-related pr 100.0 8.4E-34 2.9E-38 201.8 19.3 171 2-179 17-187 (192)
22 2hup_A RAS-related protein RAB 100.0 1.2E-33 4E-38 202.5 20.1 171 5-181 26-196 (201)
23 2gf9_A RAS-related protein RAB 100.0 3.1E-33 1E-37 198.4 21.6 168 5-179 19-186 (189)
24 3reg_A RHO-like small GTPase; 100.0 3.7E-33 1.3E-37 198.8 22.1 172 5-182 20-192 (194)
25 1z08_A RAS-related protein RAB 100.0 1.4E-33 4.7E-38 196.7 19.4 167 5-178 3-169 (170)
26 1g16_A RAS-related protein SEC 100.0 3.3E-33 1.1E-37 194.6 20.6 166 7-180 2-167 (170)
27 2j0v_A RAC-like GTP-binding pr 100.0 1.1E-33 3.8E-38 204.1 18.6 173 6-184 7-186 (212)
28 1r2q_A RAS-related protein RAB 100.0 3.5E-33 1.2E-37 194.4 20.3 166 5-177 3-168 (170)
29 2g6b_A RAS-related protein RAB 100.0 8.7E-33 3E-37 194.3 22.5 170 4-180 6-176 (180)
30 3ihw_A Centg3; RAS, centaurin, 100.0 7.3E-33 2.5E-37 195.8 21.7 168 4-181 16-183 (184)
31 1z2a_A RAS-related protein RAB 100.0 3.6E-33 1.2E-37 194.1 19.5 165 6-178 3-167 (168)
32 3dz8_A RAS-related protein RAB 100.0 3E-34 1E-38 203.9 14.3 171 4-181 19-189 (191)
33 1ek0_A Protein (GTP-binding pr 100.0 4.7E-33 1.6E-37 193.8 20.0 166 7-177 2-168 (170)
34 1z0j_A RAB-22, RAS-related pro 100.0 1E-32 3.5E-37 192.1 21.6 166 5-177 3-168 (170)
35 2o52_A RAS-related protein RAB 100.0 2.8E-33 9.5E-38 200.4 19.1 172 6-184 23-194 (200)
36 1zbd_A Rabphilin-3A; G protein 100.0 1.1E-32 3.7E-37 197.6 21.7 171 5-182 5-175 (203)
37 2oil_A CATX-8, RAS-related pro 100.0 7E-33 2.4E-37 197.1 20.4 168 5-179 22-189 (193)
38 3cbq_A GTP-binding protein REM 100.0 5.9E-33 2E-37 197.9 19.9 172 4-181 19-191 (195)
39 2iwr_A Centaurin gamma 1; ANK 100.0 9.3E-33 3.2E-37 194.0 20.0 169 6-182 5-173 (178)
40 1c1y_A RAS-related protein RAP 100.0 9.8E-33 3.3E-37 191.7 19.7 164 8-177 3-166 (167)
41 3q85_A GTP-binding protein REM 100.0 1.1E-32 3.7E-37 192.0 19.9 166 8-179 2-168 (169)
42 1z06_A RAS-related protein RAB 100.0 1.2E-32 4.2E-37 195.3 20.1 166 6-177 18-187 (189)
43 3bc1_A RAS-related protein RAB 100.0 1.3E-32 4.5E-37 195.6 20.3 172 4-181 7-188 (195)
44 4dsu_A GTPase KRAS, isoform 2B 100.0 4E-32 1.4E-36 192.3 22.4 169 6-182 2-170 (189)
45 2y8e_A RAB-protein 6, GH09086P 100.0 9.8E-33 3.4E-37 193.8 19.1 166 6-178 12-177 (179)
46 3cph_A RAS-related protein SEC 100.0 2.5E-32 8.5E-37 197.1 21.3 168 6-181 18-185 (213)
47 1gwn_A RHO-related GTP-binding 100.0 1.1E-32 3.7E-37 198.0 18.8 172 1-178 21-204 (205)
48 3q3j_B RHO-related GTP-binding 100.0 9.8E-33 3.3E-37 199.6 18.7 173 5-183 24-208 (214)
49 2hxs_A RAB-26, RAS-related pro 100.0 8.7E-33 3E-37 194.0 17.8 171 5-180 3-175 (178)
50 2gf0_A GTP-binding protein DI- 100.0 1E-32 3.5E-37 197.0 18.4 170 5-181 5-174 (199)
51 1u8z_A RAS-related protein RAL 100.0 3.5E-32 1.2E-36 188.9 20.5 165 7-178 3-167 (168)
52 3c5c_A RAS-like protein 12; GD 100.0 1.9E-32 6.6E-37 194.1 19.3 169 4-178 17-186 (187)
53 3oes_A GTPase rhebl1; small GT 100.0 7.9E-33 2.7E-37 198.2 17.4 170 6-182 22-191 (201)
54 3clv_A RAB5 protein, putative; 100.0 5.8E-32 2E-36 193.8 21.7 166 5-180 4-206 (208)
55 2p5s_A RAS and EF-hand domain 100.0 1.2E-32 4.2E-37 196.9 17.9 169 5-178 25-197 (199)
56 2atx_A Small GTP binding prote 100.0 8.3E-32 2.9E-36 191.7 22.1 168 5-178 15-193 (194)
57 2nzj_A GTP-binding protein REM 100.0 4E-32 1.4E-36 190.1 20.0 167 7-180 3-171 (175)
58 2a9k_A RAS-related protein RAL 100.0 3.7E-32 1.3E-36 192.1 19.9 169 5-180 15-183 (187)
59 1kao_A RAP2A; GTP-binding prot 100.0 3.7E-32 1.3E-36 188.6 19.0 164 8-178 3-166 (167)
60 2f7s_A C25KG, RAS-related prot 100.0 9.9E-33 3.4E-37 199.8 16.6 172 5-182 22-203 (217)
61 1m7b_A RND3/RHOE small GTP-bin 100.0 3.8E-32 1.3E-36 192.0 18.9 168 5-178 4-183 (184)
62 3q72_A GTP-binding protein RAD 100.0 5.2E-32 1.8E-36 188.0 19.2 164 8-179 2-165 (166)
63 2q3h_A RAS homolog gene family 100.0 6E-32 2E-36 193.5 19.3 171 4-180 16-197 (201)
64 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.1E-31 3.9E-36 189.5 19.4 168 7-180 4-182 (186)
65 2atv_A RERG, RAS-like estrogen 100.0 1.1E-31 3.6E-36 191.5 19.1 167 6-180 26-193 (196)
66 2gco_A H9, RHO-related GTP-bin 100.0 2.4E-31 8.3E-36 190.4 20.6 168 5-178 22-200 (201)
67 2g3y_A GTP-binding protein GEM 100.0 2.4E-31 8.1E-36 191.4 19.6 169 5-180 34-205 (211)
68 2ce2_X GTPase HRAS; signaling 100.0 1.2E-30 4.2E-35 180.6 22.4 163 8-178 3-165 (166)
69 2j1l_A RHO-related GTP-binding 100.0 2.2E-31 7.6E-36 192.4 19.3 170 6-181 32-212 (214)
70 2yc2_C IFT27, small RAB-relate 100.0 4.3E-32 1.5E-36 195.0 14.9 173 6-182 18-196 (208)
71 2fv8_A H6, RHO-related GTP-bin 100.0 4.6E-31 1.6E-35 189.8 20.3 169 6-180 23-202 (207)
72 4djt_A GTP-binding nuclear pro 100.0 1.3E-31 4.3E-36 194.2 17.3 174 4-184 7-181 (218)
73 3con_A GTPase NRAS; structural 100.0 1.6E-30 5.4E-35 184.5 22.6 168 6-181 19-186 (190)
74 3l0i_B RAS-related protein RAB 100.0 6.3E-34 2.2E-38 203.6 4.4 168 4-178 29-196 (199)
75 4gzl_A RAS-related C3 botulinu 100.0 3E-31 1E-35 190.4 17.3 166 5-176 27-203 (204)
76 3gj0_A GTP-binding nuclear pro 100.0 1E-31 3.6E-36 195.0 14.9 172 4-185 11-182 (221)
77 2erx_A GTP-binding protein DI- 100.0 4.9E-31 1.7E-35 183.9 17.4 165 7-177 2-166 (172)
78 3bwd_D RAC-like GTP-binding pr 100.0 8.8E-32 3E-36 189.5 13.1 168 5-178 5-181 (182)
79 3t1o_A Gliding protein MGLA; G 100.0 1.3E-31 4.5E-36 190.9 14.0 168 4-181 10-195 (198)
80 4bas_A ADP-ribosylation factor 100.0 3.2E-30 1.1E-34 184.1 19.7 173 4-181 13-192 (199)
81 2cjw_A GTP-binding protein GEM 100.0 7.3E-30 2.5E-34 181.5 19.9 168 6-180 4-174 (192)
82 1zd9_A ADP-ribosylation factor 100.0 1.5E-30 5.2E-35 184.4 16.2 163 5-178 19-185 (188)
83 1ksh_A ARF-like protein 2; sma 100.0 7.7E-30 2.6E-34 180.3 17.5 162 6-179 16-181 (186)
84 1upt_A ARL1, ADP-ribosylation 100.0 7.7E-30 2.6E-34 177.7 17.2 161 6-179 5-170 (171)
85 1zj6_A ADP-ribosylation factor 100.0 3E-30 1E-34 182.6 14.5 164 6-181 14-181 (187)
86 1r8s_A ADP-ribosylation factor 100.0 3.8E-30 1.3E-34 178.2 13.8 158 9-178 1-162 (164)
87 1fzq_A ADP-ribosylation factor 100.0 5E-30 1.7E-34 180.7 14.1 162 6-179 14-179 (181)
88 1f6b_A SAR1; gtpases, N-termin 100.0 1.2E-29 4E-34 181.3 16.1 158 6-175 23-196 (198)
89 2h57_A ADP-ribosylation factor 100.0 3.9E-29 1.3E-33 177.4 18.5 164 5-177 18-186 (190)
90 2f9l_A RAB11B, member RAS onco 100.0 1.3E-28 4.4E-33 176.0 21.2 168 6-180 3-170 (199)
91 2b6h_A ADP-ribosylation factor 100.0 6.7E-30 2.3E-34 181.7 14.3 161 6-178 27-191 (192)
92 1m2o_B GTP-binding protein SAR 100.0 2.6E-29 8.8E-34 178.4 17.1 158 6-175 21-189 (190)
93 2h17_A ADP-ribosylation factor 100.0 6.5E-30 2.2E-34 180.1 12.5 160 4-175 17-180 (181)
94 2x77_A ADP-ribosylation factor 100.0 1.8E-29 6.2E-34 178.9 13.9 162 6-179 20-185 (189)
95 1moz_A ARL1, ADP-ribosylation 100.0 8.2E-30 2.8E-34 179.6 11.9 162 6-179 16-181 (183)
96 2zej_A Dardarin, leucine-rich 100.0 1.4E-29 4.8E-34 178.9 12.1 166 8-181 2-181 (184)
97 2wkq_A NPH1-1, RAS-related C3 100.0 1.9E-28 6.5E-33 187.9 18.8 167 6-178 153-330 (332)
98 1oix_A RAS-related protein RAB 100.0 9.6E-28 3.3E-32 170.4 20.4 164 6-176 27-190 (191)
99 3llu_A RAS-related GTP-binding 100.0 4.9E-29 1.7E-33 177.8 12.0 163 4-176 16-195 (196)
100 3th5_A RAS-related C3 botulinu 99.9 3.1E-31 1.1E-35 190.2 0.0 165 6-176 28-203 (204)
101 2fh5_B SR-beta, signal recogni 100.0 3.5E-28 1.2E-32 175.5 16.1 168 4-175 3-213 (214)
102 2lkc_A Translation initiation 100.0 8.3E-28 2.8E-32 168.5 15.1 163 4-181 4-174 (178)
103 3o47_A ADP-ribosylation factor 100.0 3.7E-28 1.3E-32 185.8 12.5 162 6-179 163-328 (329)
104 2qu8_A Putative nucleolar GTP- 100.0 2.2E-27 7.4E-32 173.1 15.3 172 2-182 23-209 (228)
105 1svi_A GTP-binding protein YSX 100.0 1.5E-27 5.1E-32 169.7 13.7 161 6-177 21-194 (195)
106 2wji_A Ferrous iron transport 100.0 1.4E-27 4.9E-32 165.7 13.0 153 8-176 3-163 (165)
107 3c5h_A Glucocorticoid receptor 100.0 2E-28 6.8E-33 181.3 8.9 167 4-177 15-254 (255)
108 3r7w_A Gtpase1, GTP-binding pr 99.9 4.1E-27 1.4E-31 178.5 15.3 168 7-180 2-183 (307)
109 3pqc_A Probable GTP-binding pr 99.9 1E-26 3.5E-31 165.2 15.9 159 6-178 21-194 (195)
110 3lvq_E ARF-GAP with SH3 domain 99.9 5.3E-27 1.8E-31 189.0 15.4 164 6-181 320-487 (497)
111 3iev_A GTP-binding protein ERA 99.9 5.2E-26 1.8E-30 172.5 19.4 167 4-180 6-184 (308)
112 2gj8_A MNME, tRNA modification 99.9 2E-26 6.8E-31 161.0 12.6 155 7-178 3-166 (172)
113 3a1s_A Iron(II) transport prot 99.9 2.3E-26 7.8E-31 170.3 13.3 156 6-177 3-166 (258)
114 2cxx_A Probable GTP-binding pr 99.9 9.9E-27 3.4E-31 164.7 10.9 159 9-181 2-187 (190)
115 2dyk_A GTP-binding protein; GT 99.9 3.7E-26 1.3E-30 157.5 13.3 151 9-176 2-160 (161)
116 2wjg_A FEOB, ferrous iron tran 99.9 2.9E-26 1E-30 162.1 12.6 158 7-180 6-171 (188)
117 3iby_A Ferrous iron transport 99.9 9.9E-27 3.4E-31 172.0 9.5 151 9-175 2-164 (256)
118 3dpu_A RAB family protein; roc 99.9 1.1E-26 3.7E-31 188.5 9.8 166 5-181 38-211 (535)
119 4dhe_A Probable GTP-binding pr 99.9 2.9E-26 9.9E-31 166.4 11.1 166 6-181 27-214 (223)
120 3r7w_B Gtpase2, GTP-binding pr 99.9 6.2E-27 2.1E-31 176.4 5.9 167 10-187 1-183 (331)
121 3i8s_A Ferrous iron transport 99.9 2.4E-26 8.2E-31 171.7 8.9 156 8-179 3-170 (274)
122 3b1v_A Ferrous iron uptake tra 99.9 3.9E-26 1.3E-30 170.0 8.9 154 7-177 2-163 (272)
123 3k53_A Ferrous iron transport 99.9 2.9E-25 1E-29 165.8 13.0 157 8-180 3-168 (271)
124 1wb1_A Translation elongation 99.9 2E-24 6.9E-29 172.6 17.0 160 6-178 17-189 (482)
125 1wf3_A GTP-binding protein; GT 99.9 1.3E-24 4.5E-29 164.0 15.0 164 1-179 1-174 (301)
126 1s0u_A EIF-2-gamma, translatio 99.9 5.2E-24 1.8E-28 167.5 17.4 169 4-178 4-198 (408)
127 2hjg_A GTP-binding protein ENG 99.9 1.3E-24 4.4E-29 172.2 12.2 163 6-180 173-351 (436)
128 3sjy_A Translation initiation 99.9 1.4E-23 4.9E-28 164.7 16.7 169 4-179 4-193 (403)
129 3gee_A MNME, tRNA modification 99.9 5.8E-24 2E-28 169.2 14.3 158 6-177 231-397 (476)
130 1kk1_A EIF2gamma; initiation o 99.9 1.2E-23 4.1E-28 165.5 15.3 165 4-178 6-200 (410)
131 2e87_A Hypothetical protein PH 99.9 4.6E-23 1.6E-27 159.4 18.1 162 6-179 165-337 (357)
132 1nrj_B SR-beta, signal recogni 99.9 3.1E-25 1.1E-29 160.5 4.9 150 5-164 9-170 (218)
133 1lnz_A SPO0B-associated GTP-bi 99.9 5.3E-24 1.8E-28 162.9 11.1 163 9-180 159-332 (342)
134 4dcu_A GTP-binding protein ENG 99.9 1.2E-23 4.1E-28 167.5 13.0 164 6-181 193-372 (456)
135 3qq5_A Small GTP-binding prote 99.9 1.7E-24 5.8E-29 169.7 7.6 160 4-179 30-197 (423)
136 1mky_A Probable GTP-binding pr 99.9 4E-23 1.4E-27 163.8 15.5 154 9-180 2-168 (439)
137 3j2k_7 ERF3, eukaryotic polype 99.9 4.6E-23 1.6E-27 163.2 15.7 158 4-170 13-217 (439)
138 1xzp_A Probable tRNA modificat 99.9 2E-23 6.9E-28 166.2 12.7 154 7-178 242-405 (482)
139 1ega_A Protein (GTP-binding pr 99.9 1.1E-22 3.7E-27 153.8 15.5 161 6-179 6-176 (301)
140 3cb4_D GTP-binding protein LEP 99.9 6.9E-23 2.4E-27 166.7 14.4 161 7-179 3-183 (599)
141 2ywe_A GTP-binding protein LEP 99.9 2.5E-22 8.6E-27 163.1 16.8 164 5-180 3-186 (600)
142 3izy_P Translation initiation 99.9 3.7E-25 1.3E-29 177.6 -0.4 164 7-180 3-170 (537)
143 2hjg_A GTP-binding protein ENG 99.9 1.8E-23 6.1E-28 165.7 7.6 154 9-179 4-166 (436)
144 2qtf_A Protein HFLX, GTP-bindi 99.9 8.2E-22 2.8E-26 152.2 16.6 165 8-180 178-356 (364)
145 2xtp_A GTPase IMAP family memb 99.9 4.7E-22 1.6E-26 147.6 14.3 168 5-179 19-209 (260)
146 3t5d_A Septin-7; GTP-binding p 99.9 5.1E-23 1.7E-27 153.8 9.1 165 4-177 4-203 (274)
147 3geh_A MNME, tRNA modification 99.9 8.1E-23 2.8E-27 162.1 10.5 156 6-180 222-386 (462)
148 3p26_A Elongation factor 1 alp 99.9 2.1E-22 7.3E-27 161.3 13.1 155 6-167 31-227 (483)
149 1d2e_A Elongation factor TU (E 99.9 7.7E-23 2.6E-27 160.2 9.8 164 7-178 2-195 (397)
150 1mky_A Probable GTP-binding pr 99.9 9.9E-22 3.4E-26 155.8 15.6 162 6-179 178-356 (439)
151 2c78_A Elongation factor TU-A; 99.9 6.3E-23 2.2E-27 161.2 8.5 166 4-177 7-211 (405)
152 3lxw_A GTPase IMAP family memb 99.9 1.2E-21 4.1E-26 144.2 13.2 166 6-178 19-208 (247)
153 3lxx_A GTPase IMAP family memb 99.9 6.5E-21 2.2E-25 139.7 17.1 167 5-178 26-214 (239)
154 2ged_A SR-beta, signal recogni 99.9 1.9E-22 6.6E-27 143.0 8.0 119 6-133 46-172 (193)
155 1jny_A EF-1-alpha, elongation 99.9 1.2E-23 4.1E-28 166.6 1.8 163 5-170 3-205 (435)
156 3tr5_A RF-3, peptide chain rel 99.9 6.4E-22 2.2E-26 159.3 11.7 117 6-132 11-149 (528)
157 4dcu_A GTP-binding protein ENG 99.9 2.5E-22 8.7E-27 159.9 7.4 156 8-179 23-186 (456)
158 2elf_A Protein translation elo 99.9 1.1E-21 3.7E-26 151.9 10.2 150 10-179 23-181 (370)
159 1zo1_I IF2, translation initia 99.9 5.7E-24 2E-28 169.4 -2.8 157 6-175 2-164 (501)
160 1f60_A Elongation factor EEF1A 99.9 4.8E-22 1.6E-26 158.1 8.1 156 4-168 3-202 (458)
161 1cip_A Protein (guanine nucleo 99.9 3.8E-21 1.3E-25 147.6 12.5 128 48-180 186-346 (353)
162 1zun_B Sulfate adenylate trans 99.9 4E-21 1.4E-25 152.1 12.8 154 5-168 21-214 (434)
163 3izq_1 HBS1P, elongation facto 99.9 9.8E-22 3.4E-26 160.8 9.4 154 6-168 165-362 (611)
164 2qag_A Septin-2, protein NEDD5 99.9 5.5E-22 1.9E-26 153.3 7.0 172 6-188 35-243 (361)
165 1pui_A ENGB, probable GTP-bind 99.9 3.4E-21 1.2E-25 138.4 10.7 160 6-178 24-199 (210)
166 1g7s_A Translation initiation 99.9 4.1E-21 1.4E-25 156.4 12.2 163 6-179 3-219 (594)
167 3ohm_A Guanine nucleotide-bind 99.9 5.8E-21 2E-25 144.7 12.0 131 46-181 158-321 (327)
168 3avx_A Elongation factor TS, e 99.9 2.2E-21 7.6E-26 165.2 10.5 166 4-177 292-485 (1289)
169 1r5b_A Eukaryotic peptide chai 99.8 5E-22 1.7E-26 158.4 5.4 158 6-169 41-243 (467)
170 2xtz_A Guanine nucleotide-bind 99.8 8.5E-21 2.9E-25 145.6 10.6 122 55-179 181-346 (354)
171 3mca_A HBS1, elongation factor 99.8 3.7E-22 1.3E-26 162.9 3.2 163 5-176 174-395 (592)
172 1zcb_A G alpha I/13; GTP-bindi 99.8 3.3E-20 1.1E-24 142.9 11.8 127 49-180 195-355 (362)
173 2aka_B Dynamin-1; fusion prote 99.8 1E-20 3.5E-25 143.0 7.1 161 6-176 24-251 (299)
174 1dar_A EF-G, elongation factor 99.8 6.6E-19 2.3E-23 146.2 16.0 120 3-132 7-144 (691)
175 1udx_A The GTP-binding protein 99.8 1E-18 3.6E-23 136.6 15.3 164 9-181 158-328 (416)
176 3def_A T7I23.11 protein; chlor 99.8 2.2E-18 7.5E-23 127.9 14.9 123 6-132 34-166 (262)
177 2j69_A Bacterial dynamin-like 99.8 1.8E-18 6.1E-23 143.7 16.0 167 6-179 67-326 (695)
178 4fid_A G protein alpha subunit 99.8 4.4E-19 1.5E-23 134.8 10.8 120 56-178 160-328 (340)
179 2h5e_A Peptide chain release f 99.8 9.9E-19 3.4E-23 141.0 12.9 117 6-132 11-149 (529)
180 2qnr_A Septin-2, protein NEDD5 99.8 1.5E-19 5.1E-24 136.5 6.6 167 6-182 16-218 (301)
181 2dy1_A Elongation factor G; tr 99.8 2.4E-18 8.2E-23 142.4 13.9 115 6-130 7-139 (665)
182 1jwy_B Dynamin A GTPase domain 99.8 3.5E-19 1.2E-23 135.5 7.6 115 57-181 131-265 (315)
183 2rdo_7 EF-G, elongation factor 99.8 1.7E-17 5.7E-22 138.0 17.8 120 5-132 7-149 (704)
184 2xex_A Elongation factor G; GT 99.8 9.3E-18 3.2E-22 139.4 16.2 118 5-132 7-142 (693)
185 1wxq_A GTP-binding protein; st 99.8 1.5E-18 5E-23 135.4 8.1 85 9-93 1-114 (397)
186 3t34_A Dynamin-related protein 99.8 7.4E-19 2.5E-23 136.1 6.4 158 7-173 33-256 (360)
187 1h65_A Chloroplast outer envel 99.8 4.1E-17 1.4E-21 121.5 15.2 122 6-132 37-169 (270)
188 3vqt_A RF-3, peptide chain rel 99.8 2.8E-17 9.7E-22 133.0 15.2 118 6-133 29-168 (548)
189 3p32_A Probable GTPase RV1496/ 99.7 3.4E-18 1.2E-22 132.0 7.3 107 57-178 172-284 (355)
190 2wsm_A Hydrogenase expression/ 99.7 5.5E-18 1.9E-22 122.6 6.0 158 6-180 28-216 (221)
191 2x2e_A Dynamin-1; nitration, h 99.7 1.2E-18 3.9E-23 134.6 2.5 159 7-174 30-254 (353)
192 2qag_C Septin-7; cell cycle, c 99.7 1.6E-17 5.4E-22 130.0 8.2 161 6-176 29-225 (418)
193 1u0l_A Probable GTPase ENGC; p 99.7 1.3E-17 4.3E-22 126.0 6.0 134 23-173 32-168 (301)
194 1n0u_A EF-2, elongation factor 99.7 3.7E-17 1.3E-21 138.3 9.3 120 4-131 15-164 (842)
195 1jal_A YCHF protein; nucleotid 99.7 1E-15 3.5E-20 117.4 15.8 84 9-92 3-108 (363)
196 1azs_C GS-alpha; complex (lyas 99.7 4E-16 1.4E-20 121.1 12.0 128 48-180 210-387 (402)
197 2www_A Methylmalonic aciduria 99.7 7.9E-18 2.7E-22 129.5 2.1 106 57-177 167-278 (349)
198 4a9a_A Ribosome-interacting GT 99.7 1.9E-15 6.6E-20 116.5 14.9 156 7-170 71-240 (376)
199 3j25_A Tetracycline resistance 99.7 3E-17 1E-21 135.3 4.6 168 8-184 2-245 (638)
200 4fn5_A EF-G 1, elongation fact 99.7 3.3E-15 1.1E-19 124.6 15.9 120 6-133 11-153 (709)
201 2hf9_A Probable hydrogenase ni 99.6 2.3E-16 8E-21 114.3 7.2 155 7-178 37-224 (226)
202 2p67_A LAO/AO transport system 99.6 1.4E-16 4.9E-21 122.3 5.9 106 57-177 149-260 (341)
203 3zvr_A Dynamin-1; hydrolase, D 99.6 2.1E-16 7.1E-21 131.1 6.5 160 6-175 49-275 (772)
204 2qpt_A EH domain-containing pr 99.6 2.8E-16 9.7E-21 127.3 6.8 120 6-132 63-233 (550)
205 2dby_A GTP-binding protein; GD 99.6 1.6E-15 5.4E-20 117.0 10.3 84 9-92 2-111 (368)
206 1yrb_A ATP(GTP)binding protein 99.6 5.9E-15 2E-19 109.3 10.1 115 57-178 109-257 (262)
207 2qm8_A GTPase/ATPase; G protei 99.5 2.2E-14 7.4E-19 109.8 8.3 104 57-177 148-260 (337)
208 3l82_B F-box only protein 4; T 99.4 9.6E-14 3.3E-18 97.5 5.5 110 65-179 110-224 (227)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 5E-12 1.7E-16 98.1 14.1 87 6-92 18-127 (392)
210 2yv5_A YJEQ protein; hydrolase 99.4 8.3E-13 2.8E-17 99.6 9.3 97 67-173 66-164 (302)
211 2ohf_A Protein OLA1, GTP-bindi 99.4 4.5E-13 1.5E-17 103.8 6.2 88 6-93 20-129 (396)
212 3l2o_B F-box only protein 4; s 99.3 7.5E-13 2.6E-17 97.4 2.4 110 64-178 194-308 (312)
213 2qag_B Septin-6, protein NEDD5 99.2 1.1E-10 3.8E-15 91.2 9.3 143 8-160 42-218 (427)
214 3ec1_A YQEH GTPase; atnos1, at 99.2 5.8E-12 2E-16 97.6 1.6 140 9-165 163-318 (369)
215 3sop_A Neuronal-specific septi 99.1 1.5E-10 5.3E-15 85.8 7.4 139 8-156 2-178 (270)
216 2j37_W Signal recognition part 99.1 2.5E-10 8.4E-15 91.4 8.0 153 6-175 99-310 (504)
217 3h2y_A GTPase family protein; 99.1 1.4E-11 4.9E-16 95.3 -0.1 135 9-160 161-312 (368)
218 3h2y_A GTPase family protein; 99.0 7.2E-10 2.5E-14 85.8 8.5 101 66-176 55-158 (368)
219 1tq4_A IIGP1, interferon-induc 99.0 4.1E-09 1.4E-13 82.4 12.6 162 8-180 69-255 (413)
220 3ec1_A YQEH GTPase; atnos1, at 99.0 1.3E-09 4.4E-14 84.4 7.0 101 66-176 57-160 (369)
221 1puj_A YLQF, conserved hypothe 98.9 2.7E-09 9.1E-14 79.6 6.6 101 61-178 3-106 (282)
222 3dm5_A SRP54, signal recogniti 98.8 1.6E-08 5.5E-13 79.5 7.6 140 7-165 99-278 (443)
223 1puj_A YLQF, conserved hypothe 98.6 4.3E-08 1.5E-12 73.1 5.1 57 6-67 118-175 (282)
224 3kl4_A SRP54, signal recogniti 98.6 4E-08 1.4E-12 77.2 3.9 90 57-165 180-277 (433)
225 3cnl_A YLQF, putative uncharac 98.5 4.5E-08 1.5E-12 72.2 3.1 56 9-68 100-155 (262)
226 1f5n_A Interferon-induced guan 98.5 1.4E-07 4.8E-12 76.8 4.9 64 5-68 35-102 (592)
227 2v3c_C SRP54, signal recogniti 98.5 7.2E-07 2.5E-11 70.3 8.7 24 7-30 98-121 (432)
228 1j8m_F SRP54, signal recogniti 98.4 6.9E-07 2.3E-11 67.1 7.7 91 57-167 181-280 (297)
229 1t9h_A YLOQ, probable GTPase E 98.4 3.6E-07 1.2E-11 68.7 5.0 92 71-170 77-169 (307)
230 3cnl_A YLQF, putative uncharac 98.3 6.6E-07 2.3E-11 66.0 5.9 93 64-174 4-97 (262)
231 3szr_A Interferon-induced GTP- 98.3 5.3E-07 1.8E-11 74.2 5.5 23 10-32 47-69 (608)
232 3e70_C DPA, signal recognition 98.2 5.4E-06 1.8E-10 63.0 8.1 90 59-167 214-309 (328)
233 2rcn_A Probable GTPase ENGC; Y 98.1 1.4E-05 4.6E-10 61.4 9.0 86 76-171 126-212 (358)
234 3q5d_A Atlastin-1; G protein, 98.1 7.1E-05 2.4E-09 59.1 12.3 27 5-31 64-90 (447)
235 2xxa_A Signal recognition part 97.9 0.0002 6.9E-09 56.5 12.6 24 6-29 98-121 (433)
236 1bif_A 6-phosphofructo-2-kinas 97.8 1.5E-06 5.1E-11 69.4 -1.1 100 6-107 37-146 (469)
237 1ye8_A Protein THEP1, hypothet 97.7 2.3E-05 7.9E-10 54.2 3.2 23 9-31 1-23 (178)
238 1knq_A Gluconate kinase; ALFA/ 97.6 3.9E-05 1.3E-09 52.7 3.5 30 1-30 1-30 (175)
239 1kgd_A CASK, peripheral plasma 97.6 3.8E-05 1.3E-09 53.1 3.1 22 10-31 7-28 (180)
240 1lvg_A Guanylate kinase, GMP k 97.5 4.9E-05 1.7E-09 53.5 3.1 22 9-30 5-26 (198)
241 2ffh_A Protein (FFH); SRP54, s 97.5 7E-05 2.4E-09 58.8 3.4 85 57-158 181-271 (425)
242 3tr0_A Guanylate kinase, GMP k 97.5 6.9E-05 2.3E-09 52.8 3.1 22 10-31 9-30 (205)
243 3a00_A Guanylate kinase, GMP k 97.4 7E-05 2.4E-09 52.1 2.9 22 10-31 3-24 (186)
244 1ex7_A Guanylate kinase; subst 97.4 1.7E-05 6E-10 55.2 -0.4 21 11-31 4-24 (186)
245 3c8u_A Fructokinase; YP_612366 97.4 8.8E-05 3E-09 52.5 3.2 26 6-31 20-45 (208)
246 1zp6_A Hypothetical protein AT 97.4 9.3E-05 3.2E-09 51.5 3.3 23 9-31 10-32 (191)
247 4gp7_A Metallophosphoesterase; 97.4 7.7E-05 2.6E-09 51.2 2.7 20 10-29 11-30 (171)
248 2yv5_A YJEQ protein; hydrolase 97.4 0.00036 1.2E-08 52.4 6.6 20 10-29 167-186 (302)
249 1znw_A Guanylate kinase, GMP k 97.4 8.7E-05 3E-09 52.5 3.0 22 10-31 22-43 (207)
250 1t9h_A YLOQ, probable GTPase E 97.4 4.9E-05 1.7E-09 57.1 1.7 24 9-32 174-197 (307)
251 1s96_A Guanylate kinase, GMP k 97.4 9.5E-05 3.2E-09 52.9 3.1 24 9-32 17-40 (219)
252 3ney_A 55 kDa erythrocyte memb 97.4 9.9E-05 3.4E-09 51.8 3.1 23 9-31 20-42 (197)
253 2wwf_A Thymidilate kinase, put 97.4 0.00012 4.1E-09 51.8 3.5 30 1-30 3-32 (212)
254 1z6g_A Guanylate kinase; struc 97.4 9.8E-05 3.4E-09 52.8 3.0 23 9-31 24-46 (218)
255 3asz_A Uridine kinase; cytidin 97.4 0.00011 3.8E-09 52.0 3.3 25 6-30 4-28 (211)
256 3tau_A Guanylate kinase, GMP k 97.3 0.00011 3.8E-09 52.0 3.1 24 9-32 9-32 (208)
257 1uf9_A TT1252 protein; P-loop, 97.3 0.00015 5.2E-09 50.8 3.4 30 2-31 2-31 (203)
258 1ly1_A Polynucleotide kinase; 97.3 0.00016 5.5E-09 49.7 3.5 22 9-30 3-24 (181)
259 1kag_A SKI, shikimate kinase I 97.3 0.00014 4.8E-09 49.7 3.1 23 9-31 5-27 (173)
260 2qor_A Guanylate kinase; phosp 97.3 0.00015 5E-09 51.2 3.1 24 8-31 12-35 (204)
261 3sr0_A Adenylate kinase; phosp 97.3 0.00015 5.2E-09 51.3 3.1 23 9-31 1-23 (206)
262 3fb4_A Adenylate kinase; psych 97.3 0.00015 5.2E-09 51.5 3.1 22 9-30 1-22 (216)
263 3tif_A Uncharacterized ABC tra 97.3 0.00014 4.8E-09 52.6 2.9 22 10-31 33-54 (235)
264 2j41_A Guanylate kinase; GMP, 97.3 0.00015 5.2E-09 51.0 3.1 25 8-32 6-30 (207)
265 3dl0_A Adenylate kinase; phosp 97.3 0.00016 5.5E-09 51.4 3.1 22 9-30 1-22 (216)
266 1cke_A CK, MSSA, protein (cyti 97.3 0.00017 5.7E-09 51.6 3.2 22 9-30 6-27 (227)
267 3lw7_A Adenylate kinase relate 97.3 0.00017 5.9E-09 49.1 3.1 20 9-28 2-21 (179)
268 1htw_A HI0065; nucleotide-bind 97.3 0.00017 5.8E-09 48.8 3.0 24 9-32 34-57 (158)
269 2bdt_A BH3686; alpha-beta prot 97.3 0.00016 5.6E-09 50.2 3.0 21 10-30 4-24 (189)
270 4eun_A Thermoresistant glucoki 97.2 0.00018 6.1E-09 50.6 3.1 23 8-30 29-51 (200)
271 3kb2_A SPBC2 prophage-derived 97.2 0.00019 6.6E-09 48.9 3.2 23 9-31 2-24 (173)
272 2bbw_A Adenylate kinase 4, AK4 97.2 0.00019 6.4E-09 52.2 3.2 22 8-29 27-48 (246)
273 3tlx_A Adenylate kinase 2; str 97.2 0.00022 7.6E-09 51.8 3.5 25 6-30 27-51 (243)
274 3cm0_A Adenylate kinase; ATP-b 97.2 0.00027 9.1E-09 48.9 3.8 23 8-30 4-26 (186)
275 2pcj_A ABC transporter, lipopr 97.2 0.00018 6.1E-09 51.6 2.9 22 10-31 32-53 (224)
276 2rcn_A Probable GTPase ENGC; Y 97.2 0.00021 7.2E-09 54.8 3.4 24 10-33 217-240 (358)
277 2i3b_A HCR-ntpase, human cance 97.2 0.0002 7E-09 49.9 3.0 22 10-31 3-24 (189)
278 2onk_A Molybdate/tungstate ABC 97.2 0.00021 7.3E-09 51.8 3.2 22 10-31 26-47 (240)
279 3t61_A Gluconokinase; PSI-biol 97.2 0.00018 6.2E-09 50.6 2.7 24 8-31 18-41 (202)
280 1aky_A Adenylate kinase; ATP:A 97.2 0.00023 7.7E-09 50.8 3.1 24 7-30 3-26 (220)
281 1jjv_A Dephospho-COA kinase; P 97.2 0.0003 1E-08 49.6 3.6 22 9-30 3-24 (206)
282 1b0u_A Histidine permease; ABC 97.2 0.00023 7.7E-09 52.4 3.0 22 10-31 34-55 (262)
283 2rhm_A Putative kinase; P-loop 97.2 0.00027 9.3E-09 49.1 3.3 23 8-30 5-27 (193)
284 2if2_A Dephospho-COA kinase; a 97.2 0.00024 8.1E-09 50.0 3.0 22 9-30 2-23 (204)
285 3gfo_A Cobalt import ATP-bindi 97.2 0.00023 7.8E-09 52.7 3.0 22 10-31 36-57 (275)
286 2jaq_A Deoxyguanosine kinase; 97.1 0.00026 9E-09 49.6 3.2 21 10-30 2-22 (205)
287 1sgw_A Putative ABC transporte 97.1 0.00024 8.3E-09 50.6 3.0 22 10-31 37-58 (214)
288 3cwq_A Para family chromosome 97.1 0.0051 1.8E-07 43.4 9.9 65 57-130 68-133 (209)
289 2cbz_A Multidrug resistance-as 97.1 0.00024 8.2E-09 51.4 2.9 22 10-31 33-54 (237)
290 4g1u_C Hemin import ATP-bindin 97.1 0.00025 8.5E-09 52.3 3.0 22 10-31 39-60 (266)
291 2eyu_A Twitching motility prot 97.1 0.00025 8.4E-09 52.2 3.0 22 9-30 26-47 (261)
292 3vaa_A Shikimate kinase, SK; s 97.1 0.0003 1E-08 49.4 3.3 23 8-30 25-47 (199)
293 1e4v_A Adenylate kinase; trans 97.1 0.00025 8.6E-09 50.3 3.0 22 9-30 1-22 (214)
294 2cdn_A Adenylate kinase; phosp 97.1 0.0003 1E-08 49.4 3.3 25 6-30 18-42 (201)
295 1np6_A Molybdopterin-guanine d 97.1 0.00029 1E-08 48.4 3.1 23 9-31 7-29 (174)
296 1y63_A LMAJ004144AAA protein; 97.1 0.00029 1E-08 48.8 3.2 25 7-31 9-33 (184)
297 1nks_A Adenylate kinase; therm 97.1 0.00033 1.1E-08 48.6 3.4 22 9-30 2-23 (194)
298 1qhx_A CPT, protein (chloramph 97.1 0.00028 9.7E-09 48.4 3.1 23 9-31 4-26 (178)
299 1g6h_A High-affinity branched- 97.1 0.00026 8.8E-09 51.9 2.9 23 10-32 35-57 (257)
300 1tev_A UMP-CMP kinase; ploop, 97.1 0.00033 1.1E-08 48.7 3.4 23 8-30 3-25 (196)
301 3uie_A Adenylyl-sulfate kinase 97.1 0.00034 1.2E-08 49.2 3.4 25 7-31 24-48 (200)
302 1kht_A Adenylate kinase; phosp 97.1 0.0003 1E-08 48.8 3.1 22 9-30 4-25 (192)
303 3tqc_A Pantothenate kinase; bi 97.1 0.00035 1.2E-08 52.8 3.7 25 6-30 90-114 (321)
304 1mv5_A LMRA, multidrug resista 97.1 0.0003 1E-08 51.1 3.2 22 10-31 30-51 (243)
305 2pze_A Cystic fibrosis transme 97.1 0.00028 9.5E-09 50.8 3.0 23 10-32 36-58 (229)
306 2v9p_A Replication protein E1; 97.1 0.00029 1E-08 52.8 3.2 22 9-30 127-148 (305)
307 3aez_A Pantothenate kinase; tr 97.1 0.00034 1.2E-08 52.7 3.6 27 5-31 87-113 (312)
308 2olj_A Amino acid ABC transpor 97.1 0.00028 9.6E-09 51.9 3.0 22 10-31 52-73 (263)
309 2ff7_A Alpha-hemolysin translo 97.1 0.0003 1E-08 51.2 3.2 22 10-31 37-58 (247)
310 3b85_A Phosphate starvation-in 97.1 0.00023 7.9E-09 50.5 2.4 22 10-31 24-45 (208)
311 3end_A Light-independent proto 97.1 0.015 5.3E-07 43.4 12.6 67 57-128 157-224 (307)
312 1ji0_A ABC transporter; ATP bi 97.1 0.00029 9.9E-09 51.1 2.9 22 10-31 34-55 (240)
313 3ec2_A DNA replication protein 97.1 0.00028 9.6E-09 48.6 2.7 24 8-31 38-61 (180)
314 2d2e_A SUFC protein; ABC-ATPas 97.1 0.00032 1.1E-08 51.2 3.1 22 10-31 31-52 (250)
315 2qi9_C Vitamin B12 import ATP- 97.1 0.00031 1E-08 51.3 3.0 23 10-32 28-50 (249)
316 1vpl_A ABC transporter, ATP-bi 97.1 0.00031 1E-08 51.5 3.0 22 10-31 43-64 (256)
317 3be4_A Adenylate kinase; malar 97.1 0.00032 1.1E-08 49.9 3.0 24 7-30 4-27 (217)
318 2plr_A DTMP kinase, probable t 97.1 0.00039 1.3E-08 49.0 3.5 23 9-31 5-27 (213)
319 1qf9_A UMP/CMP kinase, protein 97.1 0.00044 1.5E-08 47.9 3.6 23 8-30 6-28 (194)
320 2qt1_A Nicotinamide riboside k 97.1 0.0005 1.7E-08 48.5 4.0 26 6-31 19-44 (207)
321 2jeo_A Uridine-cytidine kinase 97.1 0.00038 1.3E-08 50.6 3.4 24 7-30 24-47 (245)
322 1zd8_A GTP:AMP phosphotransfer 97.1 0.00033 1.1E-08 50.2 3.0 24 7-30 6-29 (227)
323 2zu0_C Probable ATP-dependent 97.0 0.00035 1.2E-08 51.5 3.2 22 10-31 48-69 (267)
324 1ukz_A Uridylate kinase; trans 97.0 0.00046 1.6E-08 48.4 3.7 25 6-30 13-37 (203)
325 3lnc_A Guanylate kinase, GMP k 97.0 0.0002 6.9E-09 51.5 1.8 23 9-31 28-51 (231)
326 2pt5_A Shikimate kinase, SK; a 97.0 0.0004 1.4E-08 47.2 3.2 22 9-30 1-22 (168)
327 2ghi_A Transport protein; mult 97.0 0.00036 1.2E-08 51.2 3.2 22 10-31 48-69 (260)
328 2ehv_A Hypothetical protein PH 97.0 0.00036 1.2E-08 50.5 3.1 20 10-29 32-51 (251)
329 2ixe_A Antigen peptide transpo 97.0 0.00034 1.1E-08 51.7 2.9 22 10-31 47-68 (271)
330 1odf_A YGR205W, hypothetical 3 97.0 0.00049 1.7E-08 51.3 3.8 26 5-30 28-53 (290)
331 1zak_A Adenylate kinase; ATP:A 97.0 0.0003 1E-08 50.3 2.6 23 8-30 5-27 (222)
332 2ihy_A ABC transporter, ATP-bi 97.0 0.00039 1.3E-08 51.6 3.2 23 10-32 49-71 (279)
333 2nq2_C Hypothetical ABC transp 97.0 0.00036 1.2E-08 51.0 2.9 23 10-32 33-55 (253)
334 1u0l_A Probable GTPase ENGC; p 97.0 0.00033 1.1E-08 52.6 2.8 23 10-32 171-193 (301)
335 3trf_A Shikimate kinase, SK; a 97.0 0.00044 1.5E-08 47.8 3.2 22 9-30 6-27 (185)
336 2yvu_A Probable adenylyl-sulfa 97.0 0.00058 2E-08 47.3 3.8 25 6-30 11-35 (186)
337 2yz2_A Putative ABC transporte 97.0 0.00038 1.3E-08 51.3 2.9 22 10-31 35-56 (266)
338 1gvn_B Zeta; postsegregational 97.0 0.00046 1.6E-08 51.4 3.4 24 7-30 32-55 (287)
339 2v54_A DTMP kinase, thymidylat 97.0 0.00047 1.6E-08 48.4 3.2 24 8-31 4-27 (204)
340 4a74_A DNA repair and recombin 97.0 0.00039 1.3E-08 49.7 2.9 22 10-31 27-48 (231)
341 2xb4_A Adenylate kinase; ATP-b 97.0 0.00047 1.6E-08 49.4 3.2 22 9-30 1-22 (223)
342 1via_A Shikimate kinase; struc 97.0 0.00044 1.5E-08 47.4 3.0 21 10-30 6-26 (175)
343 2chg_A Replication factor C sm 97.0 0.0013 4.6E-08 46.3 5.6 22 10-31 40-61 (226)
344 2f1r_A Molybdopterin-guanine d 97.0 0.0002 6.9E-09 49.1 1.1 22 10-31 4-25 (171)
345 3umf_A Adenylate kinase; rossm 97.0 0.00064 2.2E-08 48.5 3.7 24 8-31 29-52 (217)
346 1ak2_A Adenylate kinase isoenz 96.9 0.0005 1.7E-08 49.5 3.2 25 6-30 14-38 (233)
347 2pjz_A Hypothetical protein ST 96.9 0.00051 1.7E-08 50.5 3.2 23 10-32 32-54 (263)
348 1xjc_A MOBB protein homolog; s 96.9 0.00053 1.8E-08 46.8 3.1 23 8-30 4-26 (169)
349 1rz3_A Hypothetical protein rb 96.9 0.00055 1.9E-08 48.1 3.3 25 6-30 20-44 (201)
350 2c95_A Adenylate kinase 1; tra 96.9 0.00022 7.4E-09 49.7 1.1 23 8-30 9-31 (196)
351 1nn5_A Similar to deoxythymidy 96.9 0.00049 1.7E-08 48.6 3.0 23 8-30 9-31 (215)
352 4ido_A Atlastin-1; GTPase, GTP 96.9 0.035 1.2E-06 43.9 13.5 25 5-29 64-88 (457)
353 2bwj_A Adenylate kinase 5; pho 96.9 0.00041 1.4E-08 48.4 2.5 24 7-30 11-34 (199)
354 2p5t_B PEZT; postsegregational 96.9 0.00041 1.4E-08 50.7 2.5 25 6-30 30-54 (253)
355 2pbr_A DTMP kinase, thymidylat 96.9 0.00058 2E-08 47.4 3.2 21 10-30 2-22 (195)
356 1sq5_A Pantothenate kinase; P- 96.9 0.00067 2.3E-08 51.1 3.6 26 6-31 78-103 (308)
357 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00068 2.3E-08 49.7 3.5 23 8-30 4-26 (260)
358 3jvv_A Twitching mobility prot 96.9 0.00056 1.9E-08 52.5 3.1 21 10-30 125-145 (356)
359 3fvq_A Fe(3+) IONS import ATP- 96.9 0.00056 1.9E-08 52.5 3.0 23 10-32 32-54 (359)
360 1lw7_A Transcriptional regulat 96.9 0.00047 1.6E-08 53.2 2.6 24 8-31 170-193 (365)
361 1rj9_A FTSY, signal recognitio 96.9 0.00059 2E-08 51.3 3.0 24 7-30 101-124 (304)
362 1vht_A Dephospho-COA kinase; s 96.9 0.00077 2.6E-08 47.9 3.5 23 8-30 4-26 (218)
363 3tui_C Methionine import ATP-b 96.9 0.00063 2.2E-08 52.3 3.2 22 10-31 56-77 (366)
364 2ze6_A Isopentenyl transferase 96.8 0.00063 2.2E-08 49.7 3.1 21 10-30 3-23 (253)
365 1uj2_A Uridine-cytidine kinase 96.8 0.00074 2.5E-08 49.2 3.4 25 6-30 20-44 (252)
366 2vli_A Antibiotic resistance p 96.8 0.00043 1.5E-08 47.6 2.1 23 8-30 5-27 (183)
367 2kjq_A DNAA-related protein; s 96.8 0.00052 1.8E-08 45.9 2.4 22 10-31 38-59 (149)
368 2x8a_A Nuclear valosin-contain 96.8 0.00063 2.2E-08 50.3 3.1 21 11-31 47-67 (274)
369 3nh6_A ATP-binding cassette SU 96.8 0.00039 1.3E-08 52.3 1.9 22 10-31 82-103 (306)
370 2z0h_A DTMP kinase, thymidylat 96.8 0.00069 2.4E-08 47.2 3.1 22 10-31 2-23 (197)
371 3iij_A Coilin-interacting nucl 96.8 0.00066 2.3E-08 46.7 2.9 23 8-30 11-33 (180)
372 2bbs_A Cystic fibrosis transme 96.8 0.00059 2E-08 50.9 2.8 22 10-31 66-87 (290)
373 2f6r_A COA synthase, bifunctio 96.8 0.00082 2.8E-08 49.9 3.6 25 6-30 73-97 (281)
374 1sxj_E Activator 1 40 kDa subu 96.8 0.0035 1.2E-07 47.8 7.2 20 11-30 39-58 (354)
375 2iyv_A Shikimate kinase, SK; t 96.8 0.00058 2E-08 47.1 2.6 22 9-30 3-24 (184)
376 4e22_A Cytidylate kinase; P-lo 96.8 0.00067 2.3E-08 49.5 3.0 21 9-29 28-48 (252)
377 1z47_A CYSA, putative ABC-tran 96.8 0.00068 2.3E-08 52.0 3.1 23 10-32 43-65 (355)
378 3b9q_A Chloroplast SRP recepto 96.8 0.0007 2.4E-08 50.8 3.1 24 7-30 99-122 (302)
379 2yyz_A Sugar ABC transporter, 96.8 0.0007 2.4E-08 52.0 3.1 22 10-31 31-52 (359)
380 2it1_A 362AA long hypothetical 96.8 0.00075 2.6E-08 51.9 3.2 22 10-31 31-52 (362)
381 2pez_A Bifunctional 3'-phospho 96.8 0.00095 3.3E-08 45.9 3.5 23 8-30 5-27 (179)
382 3rlf_A Maltose/maltodextrin im 96.8 0.00075 2.6E-08 52.2 3.2 23 10-32 31-53 (381)
383 1zuh_A Shikimate kinase; alpha 96.8 0.00095 3.3E-08 45.3 3.3 22 9-30 8-29 (168)
384 2ewv_A Twitching motility prot 96.8 0.0008 2.7E-08 52.1 3.2 22 9-30 137-158 (372)
385 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00074 2.5E-08 51.4 2.9 22 10-31 173-194 (330)
386 1ixz_A ATP-dependent metallopr 96.8 0.00081 2.8E-08 49.0 3.1 22 10-31 51-72 (254)
387 1e6c_A Shikimate kinase; phosp 96.8 0.00087 3E-08 45.6 3.1 22 9-30 3-24 (173)
388 1g29_1 MALK, maltose transport 96.8 0.0008 2.7E-08 52.0 3.1 23 10-32 31-53 (372)
389 1v43_A Sugar-binding transport 96.8 0.00082 2.8E-08 51.9 3.2 22 10-31 39-60 (372)
390 1jbk_A CLPB protein; beta barr 96.8 0.00098 3.4E-08 45.8 3.3 24 8-31 43-66 (195)
391 3r20_A Cytidylate kinase; stru 96.7 0.00091 3.1E-08 48.2 3.2 23 8-30 9-31 (233)
392 2gza_A Type IV secretion syste 96.7 0.00078 2.7E-08 51.9 3.0 23 9-31 176-198 (361)
393 1gtv_A TMK, thymidylate kinase 96.7 0.0003 1E-08 49.8 0.6 21 10-30 2-22 (214)
394 3gmt_A Adenylate kinase; ssgci 96.7 0.00097 3.3E-08 47.9 3.2 27 4-30 4-30 (230)
395 2grj_A Dephospho-COA kinase; T 96.7 0.0013 4.3E-08 46.0 3.6 25 7-31 11-35 (192)
396 1p9r_A General secretion pathw 96.7 0.00094 3.2E-08 52.4 3.1 22 10-31 169-190 (418)
397 2vp4_A Deoxynucleoside kinase; 96.7 0.001 3.5E-08 47.8 3.0 26 6-31 18-43 (230)
398 4eaq_A DTMP kinase, thymidylat 96.6 0.0014 4.9E-08 47.1 3.6 25 7-31 25-49 (229)
399 3d31_A Sulfate/molybdate ABC t 96.6 0.00067 2.3E-08 51.9 1.9 22 10-31 28-49 (348)
400 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0011 3.9E-08 47.2 3.0 21 10-30 25-45 (235)
401 1m7g_A Adenylylsulfate kinase; 96.6 0.0014 4.8E-08 46.3 3.4 24 7-30 24-47 (211)
402 2og2_A Putative signal recogni 96.6 0.0012 4E-08 50.8 3.1 24 7-30 156-179 (359)
403 1in4_A RUVB, holliday junction 96.6 0.0011 3.8E-08 50.4 3.0 23 9-31 52-74 (334)
404 3gd7_A Fusion complex of cysti 96.6 0.0011 3.8E-08 51.5 3.0 21 10-30 49-69 (390)
405 1iy2_A ATP-dependent metallopr 96.6 0.0012 4.1E-08 48.8 3.1 22 10-31 75-96 (278)
406 3co5_A Putative two-component 96.6 0.0052 1.8E-07 40.6 5.9 24 8-31 27-50 (143)
407 2oap_1 GSPE-2, type II secreti 96.6 0.0012 4E-08 53.3 3.0 24 9-32 261-284 (511)
408 3nwj_A ATSK2; P loop, shikimat 96.6 0.0013 4.5E-08 47.9 2.9 22 9-30 49-70 (250)
409 2p65_A Hypothetical protein PF 96.6 0.0011 3.9E-08 45.3 2.5 24 8-31 43-66 (187)
410 2yhs_A FTSY, cell division pro 96.5 0.0013 4.5E-08 52.5 3.1 23 8-30 293-315 (503)
411 1ltq_A Polynucleotide kinase; 96.5 0.0016 5.5E-08 48.6 3.5 22 9-30 3-24 (301)
412 1oxx_K GLCV, glucose, ABC tran 96.5 0.00066 2.3E-08 52.1 1.1 23 10-32 33-55 (353)
413 1cr0_A DNA primase/helicase; R 96.5 0.0015 5E-08 48.8 2.9 22 10-31 37-58 (296)
414 1lv7_A FTSH; alpha/beta domain 96.5 0.0018 6.1E-08 47.2 3.2 24 8-31 45-68 (257)
415 3bos_A Putative DNA replicatio 96.5 0.0018 6.2E-08 46.3 3.2 23 8-30 52-74 (242)
416 3pfi_A Holliday junction ATP-d 96.5 0.011 3.8E-07 44.8 7.7 25 7-31 54-78 (338)
417 1q3t_A Cytidylate kinase; nucl 96.5 0.0018 6.1E-08 46.7 3.1 25 6-30 14-38 (236)
418 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0014 4.8E-08 52.1 2.7 23 9-31 139-161 (460)
419 2cvh_A DNA repair and recombin 96.4 0.0018 6.1E-08 45.8 3.0 21 10-30 22-42 (220)
420 2w58_A DNAI, primosome compone 96.4 0.0021 7E-08 45.0 3.2 23 9-31 55-77 (202)
421 2obl_A ESCN; ATPase, hydrolase 96.4 0.0019 6.4E-08 49.5 3.1 23 10-32 73-95 (347)
422 1n0w_A DNA repair protein RAD5 96.4 0.0019 6.6E-08 46.4 3.1 22 10-31 26-47 (243)
423 3kta_A Chromosome segregation 96.4 0.0021 7.3E-08 44.1 3.0 21 10-30 28-48 (182)
424 1nij_A Hypothetical protein YJ 96.4 0.002 6.8E-08 48.7 3.0 23 9-31 5-27 (318)
425 1svm_A Large T antigen; AAA+ f 96.4 0.002 6.8E-08 49.8 3.0 23 8-30 169-191 (377)
426 1tue_A Replication protein E1; 96.3 0.0018 6.3E-08 45.5 2.5 21 10-30 60-80 (212)
427 4fcw_A Chaperone protein CLPB; 96.3 0.0032 1.1E-07 47.1 3.9 24 8-31 47-70 (311)
428 2qmh_A HPR kinase/phosphorylas 96.3 0.0026 8.7E-08 44.6 3.0 24 9-32 35-58 (205)
429 3t15_A Ribulose bisphosphate c 96.3 0.0023 7.9E-08 47.7 2.9 25 7-31 35-59 (293)
430 3euj_A Chromosome partition pr 96.2 0.0025 8.5E-08 50.8 3.1 21 10-30 31-51 (483)
431 1yqt_A RNAse L inhibitor; ATP- 96.2 0.0028 9.5E-08 51.5 3.4 23 10-32 49-71 (538)
432 3ake_A Cytidylate kinase; CMP 96.2 0.0031 1E-07 44.2 3.2 21 10-30 4-24 (208)
433 1njg_A DNA polymerase III subu 96.2 0.0029 9.9E-08 45.1 3.1 21 10-30 47-67 (250)
434 2dpy_A FLII, flagellum-specifi 96.2 0.0028 9.6E-08 50.1 3.1 23 10-32 159-181 (438)
435 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.0031 1.1E-07 45.9 3.2 24 8-31 39-62 (262)
436 3ozx_A RNAse L inhibitor; ATP 96.2 0.0027 9.1E-08 51.5 3.0 23 10-32 27-49 (538)
437 3n70_A Transport activator; si 96.2 0.0033 1.1E-07 41.6 3.0 24 8-31 24-47 (145)
438 1d2n_A N-ethylmaleimide-sensit 96.2 0.0042 1.5E-07 45.6 3.8 27 5-31 61-87 (272)
439 3zvl_A Bifunctional polynucleo 96.2 0.0035 1.2E-07 49.2 3.5 25 7-31 257-281 (416)
440 3b9p_A CG5977-PA, isoform A; A 96.2 0.0032 1.1E-07 46.8 3.2 25 7-31 53-77 (297)
441 1nlf_A Regulatory protein REPA 96.2 0.0029 9.9E-08 46.8 2.9 21 10-30 32-52 (279)
442 3j16_B RLI1P; ribosome recycli 96.1 0.003 1E-07 52.0 3.2 23 10-32 105-127 (608)
443 3uc9_A Increased recombination 96.1 0.012 4E-07 42.1 5.8 23 9-31 30-52 (233)
444 3b60_A Lipid A export ATP-bind 96.1 0.0029 9.9E-08 51.9 3.1 22 10-31 371-392 (582)
445 3h4m_A Proteasome-activating n 96.1 0.003 1E-07 46.7 2.9 25 7-31 50-74 (285)
446 3crm_A TRNA delta(2)-isopenten 96.1 0.0041 1.4E-07 47.0 3.6 22 9-30 6-27 (323)
447 1f2t_A RAD50 ABC-ATPase; DNA d 96.1 0.0034 1.2E-07 41.9 2.9 19 11-29 26-44 (149)
448 1p5z_B DCK, deoxycytidine kina 96.1 0.0023 7.8E-08 46.9 2.2 26 6-31 22-47 (263)
449 3foz_A TRNA delta(2)-isopenten 96.1 0.0044 1.5E-07 46.5 3.6 24 8-31 10-33 (316)
450 3syl_A Protein CBBX; photosynt 96.1 0.0036 1.2E-07 46.8 3.3 25 6-30 65-89 (309)
451 2px0_A Flagellar biosynthesis 96.1 0.0034 1.2E-07 46.9 3.1 22 8-29 105-126 (296)
452 3b5x_A Lipid A export ATP-bind 96.1 0.0034 1.2E-07 51.5 3.2 22 10-31 371-392 (582)
453 1c9k_A COBU, adenosylcobinamid 96.0 0.0043 1.5E-07 42.8 3.1 21 11-31 2-22 (180)
454 1vma_A Cell division protein F 96.0 0.0044 1.5E-07 46.5 3.5 24 7-30 103-126 (306)
455 3cf0_A Transitional endoplasmi 96.0 0.0036 1.2E-07 46.8 2.9 24 8-31 49-72 (301)
456 3v9p_A DTMP kinase, thymidylat 96.0 0.003 1E-07 45.3 2.3 24 7-30 24-47 (227)
457 2ocp_A DGK, deoxyguanosine kin 96.0 0.0046 1.6E-07 44.6 3.3 24 8-31 2-25 (241)
458 3bk7_A ABC transporter ATP-bin 96.0 0.0039 1.3E-07 51.3 3.2 23 10-32 119-141 (607)
459 2dr3_A UPF0273 protein PH0284; 96.0 0.0041 1.4E-07 44.7 3.0 21 10-30 25-45 (247)
460 1l8q_A Chromosomal replication 96.0 0.0039 1.3E-07 47.1 2.9 23 9-31 38-60 (324)
461 2h92_A Cytidylate kinase; ross 96.0 0.0038 1.3E-07 44.2 2.7 22 9-30 4-25 (219)
462 3d3q_A TRNA delta(2)-isopenten 96.0 0.0041 1.4E-07 47.3 3.0 22 9-30 8-29 (340)
463 2yl4_A ATP-binding cassette SU 96.0 0.003 1E-07 51.9 2.4 22 10-31 372-393 (595)
464 1a7j_A Phosphoribulokinase; tr 96.0 0.0018 6.3E-08 48.2 1.0 23 8-30 5-27 (290)
465 3qf4_B Uncharacterized ABC tra 95.9 0.0033 1.1E-07 51.7 2.6 22 10-31 383-404 (598)
466 3ozx_A RNAse L inhibitor; ATP 95.9 0.004 1.4E-07 50.5 3.0 23 10-32 296-318 (538)
467 2ga8_A Hypothetical 39.9 kDa p 95.9 0.006 2E-07 46.7 3.6 23 8-30 24-46 (359)
468 3exa_A TRNA delta(2)-isopenten 95.9 0.0052 1.8E-07 46.2 3.2 22 10-31 5-26 (322)
469 1yqt_A RNAse L inhibitor; ATP- 95.9 0.0051 1.7E-07 49.9 3.4 23 10-32 314-336 (538)
470 2qby_A CDC6 homolog 1, cell di 95.9 0.0045 1.5E-07 47.5 2.9 23 8-30 45-67 (386)
471 3qf7_A RAD50; ABC-ATPase, ATPa 95.9 0.005 1.7E-07 47.4 3.1 19 11-29 26-44 (365)
472 3u61_B DNA polymerase accessor 95.9 0.081 2.8E-06 39.7 9.8 21 11-31 51-71 (324)
473 3a8t_A Adenylate isopentenyltr 95.9 0.0067 2.3E-07 46.0 3.7 23 9-31 41-63 (339)
474 3bk7_A ABC transporter ATP-bin 95.9 0.0053 1.8E-07 50.5 3.4 23 10-32 384-406 (607)
475 4a82_A Cystic fibrosis transme 95.9 0.0029 9.8E-08 51.9 1.8 22 10-31 369-390 (578)
476 1pzn_A RAD51, DNA repair and r 95.8 0.0048 1.6E-07 47.3 2.9 23 9-31 132-154 (349)
477 1fnn_A CDC6P, cell division co 95.8 0.0055 1.9E-07 47.2 3.3 22 10-31 46-67 (389)
478 3cr8_A Sulfate adenylyltranfer 95.8 0.004 1.4E-07 50.6 2.5 25 7-31 368-392 (552)
479 1ofh_A ATP-dependent HSL prote 95.8 0.0053 1.8E-07 45.7 3.1 24 8-31 50-73 (310)
480 3tqf_A HPR(Ser) kinase; transf 95.8 0.0067 2.3E-07 41.4 3.2 24 9-32 17-40 (181)
481 3j16_B RLI1P; ribosome recycli 95.8 0.0054 1.8E-07 50.5 3.2 22 11-32 381-402 (608)
482 3qf4_A ABC transporter, ATP-bi 95.8 0.0039 1.3E-07 51.2 2.3 22 10-31 371-392 (587)
483 1sxj_C Activator 1 40 kDa subu 95.8 0.0055 1.9E-07 46.6 2.9 22 10-31 48-69 (340)
484 3eie_A Vacuolar protein sortin 95.8 0.0062 2.1E-07 46.0 3.2 25 7-31 50-74 (322)
485 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.0058 2E-07 46.2 3.0 25 7-31 44-68 (322)
486 4edh_A DTMP kinase, thymidylat 95.7 0.0069 2.3E-07 43.0 3.0 23 8-30 6-28 (213)
487 4b4t_M 26S protease regulatory 95.6 0.007 2.4E-07 47.6 3.2 25 7-31 214-238 (434)
488 4b4t_K 26S protease regulatory 95.6 0.0072 2.5E-07 47.5 3.2 25 7-31 205-229 (428)
489 2qgz_A Helicase loader, putati 95.6 0.0079 2.7E-07 45.2 3.2 23 8-30 152-174 (308)
490 2v1u_A Cell division control p 95.6 0.0062 2.1E-07 46.8 2.6 25 7-31 43-67 (387)
491 4dzz_A Plasmid partitioning pr 95.6 0.04 1.4E-06 38.3 6.7 83 57-150 76-158 (206)
492 1sxj_D Activator 1 41 kDa subu 95.6 0.0074 2.5E-07 45.9 3.0 22 10-31 60-81 (353)
493 1tf7_A KAIC; homohexamer, hexa 95.6 0.0069 2.4E-07 49.0 2.9 19 11-29 42-60 (525)
494 4b4t_L 26S protease subunit RP 95.5 0.0079 2.7E-07 47.4 3.2 25 7-31 214-238 (437)
495 3ld9_A DTMP kinase, thymidylat 95.5 0.01 3.4E-07 42.4 3.5 25 6-30 19-43 (223)
496 2r62_A Cell division protease 95.5 0.0033 1.1E-07 46.0 0.9 23 9-31 45-67 (268)
497 1g8f_A Sulfate adenylyltransfe 95.5 0.0095 3.3E-07 47.9 3.6 28 4-31 391-418 (511)
498 1m8p_A Sulfate adenylyltransfe 95.5 0.011 3.6E-07 48.4 3.9 26 5-30 393-418 (573)
499 3uk6_A RUVB-like 2; hexameric 95.5 0.0083 2.8E-07 46.0 3.1 23 9-31 71-93 (368)
500 3pxg_A Negative regulator of g 95.5 0.0077 2.6E-07 48.0 3.0 24 8-31 201-224 (468)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=7.1e-42 Score=246.95 Aligned_cols=194 Identities=34% Similarity=0.609 Sum_probs=143.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
.+.+||+|+|.+|||||||+++|+.+.|...+.++.+.++....+..++..+.+.||||+|++++..+...+++.+++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|||++++++|+.+..|+..+...... ++|+++|+||+|+.+. +.+..+++++++..++ ++|+++||++|.||
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~~----~~piilVgNK~Dl~~~--r~V~~~e~~~~a~~~~-~~~~e~SAktg~nV 163 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDLADK--RQVSIEEGERKAKELN-VMFIETSAKAGYNV 163 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTT----SSEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEEBTTTTBSH
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcCC----CCeEEEEeeccchHhc--CcccHHHHhhHHHHhC-CeeEEEeCCCCcCH
Confidence 999999999999999999998877653 7899999999999865 7788999999999998 88999999999999
Q ss_pred HHHHHHHHHHHHhcCccccccCCccccc----CCCCCCCCCCccC
Q 028647 166 EEAFQCIAKNALKSGEEEEIYLPDTIDV----GNSSQPRSSGCEC 206 (206)
Q Consensus 166 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~gc~~ 206 (206)
+++|+.|++.+...........+....+ ......++++|||
T Consensus 164 ~e~F~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~C 208 (216)
T 4dkx_A 164 KQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC 208 (216)
T ss_dssp HHHHHHHHHHC----------------------------------
T ss_pred HHHHHHHHHHHHhhhcccccccccccccccCCCCCCCCCCCCCce
Confidence 9999999999876555444433333222 2222344556667
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=2.5e-37 Score=222.34 Aligned_cols=199 Identities=34% Similarity=0.654 Sum_probs=158.6
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc
Q 028647 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (206)
|....+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 80 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence 55456778999999999999999999999999888888888888888888899988999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (206)
+|++++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+. +....++...++...+ ++++++||+
T Consensus 81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~ 153 (206)
T 2bcg_Y 81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATS----TVLKLLVGNKCDLKDK--RVVEYDVAKEFADANK-MPFLETSAL 153 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CCEEECCTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CeEEEEeCC
Confidence 99999999999999999999998888766432 7899999999999765 4566778888888776 899999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCccccccC------C-cccccCCCCCCCCCCccC
Q 028647 161 EGINVEEAFQCIAKNALKSGEEEEIYL------P-DTIDVGNSSQPRSSGCEC 206 (206)
Q Consensus 161 ~~~~i~~l~~~l~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~gc~~ 206 (206)
+|.|++++|++|.+.+.+......... + ..+.+...+..+++||||
T Consensus 154 ~g~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 206 (206)
T 2bcg_Y 154 DSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQSLTNTGGCCC 206 (206)
T ss_dssp TCTTHHHHHHHHHHHHHHHCCHHHHHTTSGGGCCCSCCCTTCC----------
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcccccccccCCCccceeccccccccCCCCCC
Confidence 999999999999999987765443221 1 223333233356679977
No 3
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=5.9e-38 Score=225.64 Aligned_cols=203 Identities=72% Similarity=1.193 Sum_probs=156.0
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc
Q 028647 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (206)
|+...++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (207)
T 1vg8_A 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80 (207)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT
T ss_pred CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC
Confidence 66677889999999999999999999999998888888888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (206)
+|++++|+|++++.+++.+..|+..+..........+.|+++|+||+|+.+ +....++...+.....+++++++||+
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (207)
T 1vg8_A 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN---RQVATKRAQAWCYSKNNIPYFETSAK 157 (207)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC---CCSCHHHHHHHHHHTTSCCEEECBTT
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc---cccCHHHHHHHHHhcCCceEEEEeCC
Confidence 999999999999999999999998887776543334789999999999974 44567778888775556899999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCcccccc--CCcccccCC--CCCCCCCCccC
Q 028647 161 EGINVEEAFQCIAKNALKSGEEEEIY--LPDTIDVGN--SSQPRSSGCEC 206 (206)
Q Consensus 161 ~~~~i~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~gc~~ 206 (206)
+|.|+++++++|.+.+.+.....+.. .+..+.+.. ....+++||||
T Consensus 158 ~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c 207 (207)
T 1vg8_A 158 EAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASAESCSC 207 (207)
T ss_dssp TTBSHHHHHHHHHHHHHHHHHHHHHHHHSCCCC-----------------
T ss_pred CCCCHHHHHHHHHHHHHHhccccccccCCCccccCCcccccccCCCCCCC
Confidence 99999999999999998766544321 233344433 23467788988
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=212.54 Aligned_cols=194 Identities=27% Similarity=0.458 Sum_probs=148.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
..+.++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 34579999999999999999999999888777777776555 45667888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN 164 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (206)
++|+|++++++++.+..|+..+....... ++|+++|+||+|+.+. +....+++..++...+ ++++++||++|.|
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g 163 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK--RQVSVEEAKNRAEQWN-VNYVETSAKTRAN 163 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCS---CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEECTTTCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEeccCcccc--ccccHHHHHHHHHHhC-CeEEEEeCCCCCC
Confidence 99999999999999999998887765422 7899999999999764 4566788888888887 7999999999999
Q ss_pred HHHHHHHHHHHHHhcCccccccCCcccccCCCCCCCCCCcc
Q 028647 165 VEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCE 205 (206)
Q Consensus 165 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gc~ 205 (206)
++++|++|.+.+..+............+.....+..+++||
T Consensus 164 i~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Cc 204 (206)
T 2bov_A 164 VDKVFFDLMREIRARKMEDSKEKNGKKKRKSLAKRIRERCC 204 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHHHHHHHHHccccccccccCcccccchhhcccccee
Confidence 99999999999987543322221111112222344556786
No 5
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-34 Score=210.57 Aligned_cols=175 Identities=33% Similarity=0.627 Sum_probs=143.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 56799999999999999999999999988888888888888888889998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|+|++++.+++.+..|+..+...... ++|+++|+||+|+.+. +....++...++...+ ++++++||++|.|+
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~~~----~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 163 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENADD----NVAVGLIGNKSDLAHL--RAVPTEESKTFAQENQ-LLFTETSALNSENV 163 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHCC------CEEEEEECCGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCCC-CCCH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 999999999999999999888766432 7899999999999764 4566778888888876 89999999999999
Q ss_pred HHHHHHHHHHHHhcCccccccC
Q 028647 166 EEAFQCIAKNALKSGEEEEIYL 187 (206)
Q Consensus 166 ~~l~~~l~~~~~~~~~~~~~~~ 187 (206)
+++|++|.+.+.+.....+..+
T Consensus 164 ~~l~~~l~~~i~~~~~~~~~~~ 185 (223)
T 3cpj_B 164 DKAFEELINTIYQKVSKHQMDL 185 (223)
T ss_dssp HHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHHHHHHHHhhhcccCc
Confidence 9999999999988776665543
No 6
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=7.4e-34 Score=202.51 Aligned_cols=174 Identities=38% Similarity=0.688 Sum_probs=154.6
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 44678999999999999999999999999888888999999988999999998999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI 163 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (206)
+++|+|++++.+++.+..|+..+...... ++|+++|+||+|+.+. +....++..+++..++ ++++++||++|.
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~ 164 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDLTTK--KVVDYTTAKEFADSLG-IPFLETSAKNAT 164 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CCEEEECTTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CcEEEEeCCCCC
Confidence 99999999999999999999888776543 7899999999999866 5667778888888887 899999999999
Q ss_pred CHHHHHHHHHHHHHhcCcccc
Q 028647 164 NVEEAFQCIAKNALKSGEEEE 184 (206)
Q Consensus 164 ~i~~l~~~l~~~~~~~~~~~~ 184 (206)
|++++|++|.+.+.++.....
T Consensus 165 gv~~l~~~l~~~i~~~~~~~~ 185 (196)
T 3tkl_A 165 NVEQSFMTMAAEIKKRMGPGA 185 (196)
T ss_dssp THHHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHHHhcccc
Confidence 999999999999988765543
No 7
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.1e-34 Score=201.80 Aligned_cols=174 Identities=41% Similarity=0.714 Sum_probs=151.1
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc
Q 028647 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (206)
|+...++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 55567788999999999999999999999998888888898988988899999988999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (206)
+|++++|+|++++.+++.+..|+..+..... +.|+++|+||+|+.+. +....++...++...+ ++++++||+
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~ 153 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-----DVCRILVGNKNDDPER--KVVETEDAYKFAGQMG-IQLFETSAK 153 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-----TSEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CCEEECBTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECCCCchh--cccCHHHHHHHHHHcC-CeEEEEECC
Confidence 9999999999999999999999988877653 7899999999998765 4566778888888887 899999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCcc
Q 028647 161 EGINVEEAFQCIAKNALKSGEE 182 (206)
Q Consensus 161 ~~~~i~~l~~~l~~~~~~~~~~ 182 (206)
+|.|+++++++|.+.+.+....
T Consensus 154 ~~~gi~~l~~~l~~~~~~~~~~ 175 (181)
T 3tw8_B 154 ENVNVEEMFNCITELVLRAKKD 175 (181)
T ss_dssp TTBSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999998775543
No 8
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=6.9e-35 Score=205.75 Aligned_cols=174 Identities=40% Similarity=0.699 Sum_probs=124.3
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc
Q 028647 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (206)
|....++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++++
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (183)
T 2fu5_C 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 80 (183)
T ss_dssp --CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhc
Confidence 55556778999999999999999999999888777778888888888888889888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (206)
+|++++|+|++++.+++.+..|+..+...... ++|+++|+||+|+.+. +....+++.+++...+ ++++++||+
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~ 153 (183)
T 2fu5_C 81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKCDVNDK--RQVSKERGEKLALDYG-IKFMETSAK 153 (183)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEEC--CCSC--CCSCHHHHHHHHHHHT-CEEEECCC-
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECccCCcc--CcCCHHHHHHHHHHcC-CeEEEEeCC
Confidence 99999999999999999999999888765432 7899999999999765 4566788888888887 899999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCc
Q 028647 161 EGINVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 161 ~~~~i~~l~~~l~~~~~~~~~ 181 (206)
+|.|++++|++|.+.+.++..
T Consensus 154 ~~~~i~~l~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 154 ANINVENAFFTLARDIKAKMD 174 (183)
T ss_dssp --CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999876544
No 9
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=3.8e-34 Score=202.41 Aligned_cols=177 Identities=38% Similarity=0.648 Sum_probs=154.7
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc
Q 028647 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (206)
|+...++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 82 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 82 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence 55566788999999999999999999999999888888888888888888899988899999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (206)
+|++++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+. +....++..+++...+ ++++++||+
T Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~ 155 (186)
T 2bme_A 83 AAGALLVYDITSRETYNALTNWLTDARMLASQ----NIVIILCGNKKDLDAD--REVTFLEASRFAQENE-LMFLETSAL 155 (186)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEecCC
Confidence 99999999999999999999998887665432 7899999999999754 4566777888888877 899999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCcccc
Q 028647 161 EGINVEEAFQCIAKNALKSGEEEE 184 (206)
Q Consensus 161 ~~~~i~~l~~~l~~~~~~~~~~~~ 184 (206)
+|.|++++|++|.+.+.+.....+
T Consensus 156 ~~~gi~~l~~~l~~~~~~~~~~~~ 179 (186)
T 2bme_A 156 TGENVEEAFVQCARKILNKIESGE 179 (186)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHHHHhhhcC
Confidence 999999999999999987654443
No 10
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=1.3e-33 Score=199.18 Aligned_cols=170 Identities=30% Similarity=0.565 Sum_probs=150.3
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccC
Q 028647 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA 81 (206)
Q Consensus 2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (206)
+....+.++|+|+|++|+|||||+++|....+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 90 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 34566789999999999999999999999988888888877766 77778899889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc-
Q 028647 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK- 160 (206)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~- 160 (206)
|++++|+|++++.+++.+..|+..+....... ++|+++|+||+|+.+. +....+++++++..++ ++++++||+
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 164 (183)
T 3kkq_A 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRE---SFPMILVANKVDLMHL--RKVTRDQGKEMATKYN-IPYIETSAKD 164 (183)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS---CCCEEEEEECTTCSTT--CCSCHHHHHHHHHHHT-CCEEEEBCSS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECCCchhc--cCcCHHHHHHHHHHhC-CeEEEeccCC
Confidence 99999999999999999999988887654332 7899999999999875 6677888999999988 899999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 028647 161 EGINVEEAFQCIAKNALK 178 (206)
Q Consensus 161 ~~~~i~~l~~~l~~~~~~ 178 (206)
++.|++++|++|.+.+.+
T Consensus 165 ~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 165 PPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp SCBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999998865
No 11
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=2e-33 Score=197.12 Aligned_cols=173 Identities=52% Similarity=0.996 Sum_probs=150.0
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
+....++|+|+|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 45678999999999999999999999998888888888888888888899988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI 163 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (206)
+++|+|++++.+++.+..|+..+..........+.|+++|+||+|+.+ +....+++.+++......+++++||++|.
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE---RQVSTEEAQAWCRDNGDYPYFETSAKDAT 159 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS---CSSCHHHHHHHHHHTTCCCEEECCTTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc---cccCHHHHHHHHHhcCCceEEEEeCCCCC
Confidence 999999999999999999999888776544444889999999999973 45677888888885666899999999999
Q ss_pred CHHHHHHHHHHHHHhc
Q 028647 164 NVEEAFQCIAKNALKS 179 (206)
Q Consensus 164 ~i~~l~~~l~~~~~~~ 179 (206)
|++++|++|.+.+++.
T Consensus 160 gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 160 NVAAAFEEAVRRVLAT 175 (177)
T ss_dssp THHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999998764
No 12
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=9.6e-34 Score=199.41 Aligned_cols=171 Identities=36% Similarity=0.650 Sum_probs=148.9
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
.....++|+|+|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 45678999999999999999999999998888888888888888888889888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI 163 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (206)
+++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+. +....+++.+++...+ ++++++||++|.
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~ 160 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNP----NMVMALAGNKSDLLDA--RKVTAEDAQTYAQENG-LFFMETSAKTAT 160 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CEEEECCSSSCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECCccccc--ccCCHHHHHHHHHHcC-CEEEEEECCCCC
Confidence 99999999999999999999888776532 7899999999999765 4566788888888876 899999999999
Q ss_pred CHHHHHHHHHHHHHhcCc
Q 028647 164 NVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 164 ~i~~l~~~l~~~~~~~~~ 181 (206)
|+++++++|.+.+.+..+
T Consensus 161 gi~~l~~~l~~~~~~~~~ 178 (181)
T 2efe_B 161 NVKEIFYEIARRLPRVQP 178 (181)
T ss_dssp THHHHHHHHHHTCC----
T ss_pred CHHHHHHHHHHHHHhcCC
Confidence 999999999998865543
No 13
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=2.5e-34 Score=202.48 Aligned_cols=179 Identities=64% Similarity=1.085 Sum_probs=138.3
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeC-CeEEEEEEEeCCChhhhccchhhhhc
Q 028647 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYR 79 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~ 79 (206)
|+...++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++
T Consensus 1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (182)
T 1ky3_A 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR 80 (182)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST
T ss_pred CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh
Confidence 65667788999999999999999999999998888888888877877777776 55678999999999999999999999
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA 159 (206)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 159 (206)
.+|++++|+|++++.+++.+..|+..+..........++|+++|+||+|+.... +....++..+++......+++++||
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~v~~~~~~~~~~~~~~~~~~~~Sa 159 (182)
T 1ky3_A 81 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESK-KIVSEKSAQELAKSLGDIPLFLTSA 159 (182)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG-CCSCHHHHHHHHHHTTSCCEEEEBT
T ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccc-ccCCHHHHHHHHHhcCCCeEEEEec
Confidence 999999999999999999999999988877654444488999999999996432 3456778888887566689999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcC
Q 028647 160 KEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 160 ~~~~~i~~l~~~l~~~~~~~~ 180 (206)
++|.|++++|++|.+.+.++.
T Consensus 160 ~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 160 KNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp TTTBSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999987653
No 14
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.8e-34 Score=204.04 Aligned_cols=172 Identities=38% Similarity=0.631 Sum_probs=151.6
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
..++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 34567999999999999999999999999888888898888888888899988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI 163 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (206)
+++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+. +....++.+.++...+ ++++++||++|.
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~ 174 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQYASN----KVITVLVGNKIDLAER--REVSQQRAEEFSEAQD-MYYLETSAKESD 174 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CCEEECCTTTCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 99999999999999999998888765432 7899999999999754 4566777888887776 899999999999
Q ss_pred CHHHHHHHHHHHHHhcCcc
Q 028647 164 NVEEAFQCIAKNALKSGEE 182 (206)
Q Consensus 164 ~i~~l~~~l~~~~~~~~~~ 182 (206)
|++++|++|.+.+.+....
T Consensus 175 gv~~l~~~l~~~i~~~~~~ 193 (201)
T 2ew1_A 175 NVEKLFLDLACRLISEARQ 193 (201)
T ss_dssp THHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 9999999999999875443
No 15
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=1.3e-33 Score=198.63 Aligned_cols=175 Identities=32% Similarity=0.533 Sum_probs=150.0
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc
Q 028647 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (206)
|+......++|+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 80 (181)
T 2fn4_A 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80 (181)
T ss_dssp --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHH
T ss_pred CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhh
Confidence 5566677899999999999999999999999888777888776664 667788888899999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (206)
+|++++|+|++++.+++.+..|+..+....... ++|+++|+||+|+.+. +....++...+....+ ++++++||+
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~ 154 (181)
T 2fn4_A 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD---DFPVVLVGNKADLESQ--RQVPRSEASAFGASHH-VAYFEASAK 154 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSS---CCCEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECBTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CeEEEecCC
Confidence 999999999999999999999988886654322 7899999999999764 4566777888887776 899999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCcc
Q 028647 161 EGINVEEAFQCIAKNALKSGEE 182 (206)
Q Consensus 161 ~~~~i~~l~~~l~~~~~~~~~~ 182 (206)
+|.|+++++++|.+.+.+....
T Consensus 155 ~~~gv~~l~~~l~~~~~~~~~~ 176 (181)
T 2fn4_A 155 LRLNVDEAFEQLVRAVRKYQEQ 176 (181)
T ss_dssp TTBSHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999776543
No 16
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.1e-33 Score=201.02 Aligned_cols=171 Identities=39% Similarity=0.677 Sum_probs=147.6
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
...+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 96 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 96 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence 44678999999999999999999999998888788888888888888889988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI 163 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (206)
+++|+|++++++++.+..|+..+...... +.|+++|+||+|+.+. +....++.++++...+ ++++++||++|.
T Consensus 97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~----~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 169 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKSDLESR--RDVKREEGEAFAREHG-LIFMETSAKTAC 169 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEECTTTCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccCCc--cccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 99999999999999999998888765432 7899999999999754 4566778888888887 899999999999
Q ss_pred CHHHHHHHHHHHHHhcCc
Q 028647 164 NVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 164 ~i~~l~~~l~~~~~~~~~ 181 (206)
|++++|++|.+.+.++..
T Consensus 170 gi~~l~~~l~~~i~~~~~ 187 (191)
T 2a5j_A 170 NVEEAFINTAKEIYRKIQ 187 (191)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999876543
No 17
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1.8e-33 Score=197.51 Aligned_cols=168 Identities=37% Similarity=0.674 Sum_probs=149.0
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
...+.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 45678999999999999999999999998887788888888888888889888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI 163 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (206)
+++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+. +....+++++++...+ ++++++||++|.
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 163 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKADLEAQ--RDVTYEEAKQFAEENG-LLFLEASAKTGE 163 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCT
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 99999999999999999998888766432 7899999999999754 4566778888888877 899999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 028647 164 NVEEAFQCIAKNALK 178 (206)
Q Consensus 164 ~i~~l~~~l~~~~~~ 178 (206)
|++++|++|.+.+.+
T Consensus 164 gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 164 NVEDAFLEAAKKIYQ 178 (179)
T ss_dssp THHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998754
No 18
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.5e-34 Score=202.43 Aligned_cols=171 Identities=37% Similarity=0.659 Sum_probs=143.7
Q ss_pred cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCc
Q 028647 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (206)
Q Consensus 3 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (206)
.+....++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 45567899999999999999999999998888788888888888888889998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG 162 (206)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 162 (206)
++++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+. +....++.++++..+.+.+++++||++|
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~----~~piilV~NK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~~SA~~g 174 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYASE----DAELLLVGNKLDCETD--REITRQQGEKFAQQITGMRFCEASAKDN 174 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHTSTTCEEEECBTTTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc--cccCHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 999999999999999998888777665432 7899999999999764 4566778888888765689999999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q 028647 163 INVEEAFQCIAKNALKS 179 (206)
Q Consensus 163 ~~i~~l~~~l~~~~~~~ 179 (206)
.|++++|++|.+.+.++
T Consensus 175 ~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 175 FNVDEIFLKLVDDILKK 191 (192)
T ss_dssp BSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988653
No 19
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.8e-33 Score=199.25 Aligned_cols=172 Identities=35% Similarity=0.617 Sum_probs=150.7
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccC
Q 028647 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA 81 (206)
Q Consensus 2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (206)
.....+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (195)
T 1x3s_A 9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGA 88 (195)
T ss_dssp CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTC
T ss_pred ccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 34445679999999999999999999999988888888888888888888999899999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccC
Q 028647 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE 161 (206)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 161 (206)
|++++|+|++++.+++.+..|+..+..... ..++|+++|+||+|+.+ +....++..+++...+ ++++++||++
T Consensus 89 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 161 (195)
T 1x3s_A 89 QGVILVYDVTRRDTFVKLDNWLNELETYCT---RNDIVNMLVGNKIDKEN---REVDRNEGLKFARKHS-MLFIEASAKT 161 (195)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHTTCCS---CSCCEEEEEEECTTSSS---CCSCHHHHHHHHHHTT-CEEEECCTTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcC---cCCCcEEEEEECCcCcc---cccCHHHHHHHHHHcC-CEEEEecCCC
Confidence 999999999999999999999888765432 22789999999999954 4456777888888876 8999999999
Q ss_pred CCCHHHHHHHHHHHHHhcC
Q 028647 162 GINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 162 ~~~i~~l~~~l~~~~~~~~ 180 (206)
+.|+++++++|.+.+.+..
T Consensus 162 ~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 162 CDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp CTTHHHHHHHHHHHHHTSG
T ss_pred CCCHHHHHHHHHHHHHhhh
Confidence 9999999999999997644
No 20
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2e-33 Score=197.90 Aligned_cols=170 Identities=31% Similarity=0.465 Sum_probs=148.7
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
..+.++|+|+|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 34679999999999999999999998888888888887776 67778899889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN 164 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (206)
++|+|++++++++.+..|+..+....... ++|+++|+||+|+.+. +....+++++++..++ ++++++||++|.|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 155 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDLHME--RVISYEEGKALAESWN-AAFLESSAKENQT 155 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC-------CCEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CEEEECCTTSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECccchhc--ceecHHHHHHHHHHhC-CcEEEEecCCCCC
Confidence 99999999999999999998887765432 7899999999999765 6677889999999887 8999999999999
Q ss_pred HHHHHHHHHHHHHhcCc
Q 028647 165 VEEAFQCIAKNALKSGE 181 (206)
Q Consensus 165 i~~l~~~l~~~~~~~~~ 181 (206)
++++|++|++.+.....
T Consensus 156 v~~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 156 AVDVFRRIILEAEKMDG 172 (181)
T ss_dssp HHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999977653
No 21
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.4e-34 Score=201.85 Aligned_cols=171 Identities=40% Similarity=0.645 Sum_probs=148.2
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccC
Q 028647 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA 81 (206)
Q Consensus 2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (206)
+...++.++|+|+|++|+|||||+++|.+..+.....++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+
T Consensus 17 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (192)
T 2fg5_A 17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS 96 (192)
T ss_dssp ----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred ccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC
Confidence 34457789999999999999999999999988878888888888888888888889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccC
Q 028647 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE 161 (206)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 161 (206)
|++++|+|++++.+++.+..|+..+...... ++|+++|+||+|+.+. +....+++++++...+ ++++++||++
T Consensus 97 d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 169 (192)
T 2fg5_A 97 AAAVIVYDITKQDSFYTLKKWVKELKEHGPE----NIVMAIAGNKCDLSDI--REVPLKDAKEYAESIG-AIVVETSAKN 169 (192)
T ss_dssp SEEEEEEETTCTHHHHHHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHTTT-CEEEECBTTT
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 9999999999999999999999888766432 7899999999999753 4566788888888887 8999999999
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 028647 162 GINVEEAFQCIAKNALKS 179 (206)
Q Consensus 162 ~~~i~~l~~~l~~~~~~~ 179 (206)
|.|+++++++|.+.+.+.
T Consensus 170 ~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 170 AINIEELFQGISRQIPPL 187 (192)
T ss_dssp TBSHHHHHHHHHHTCC--
T ss_pred CcCHHHHHHHHHHHHHhh
Confidence 999999999999887544
No 22
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=202.52 Aligned_cols=171 Identities=35% Similarity=0.563 Sum_probs=142.8
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
.+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 35679999999999999999999999988877788888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN 164 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (206)
++|+|++++.+++.+..|+..+..... .++|+++|+||+|+.+. +....+++++++...+..+++++||++|.|
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g 179 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYAG----SNIVQLLIGNKSDLSEL--REVSLAEAQSLAEHYDILCAIETSAKDSSN 179 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTTCSEEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCccccc--cccCHHHHHHHHHHcCCCEEEEEeCCCCCC
Confidence 999999999999999999988876652 27899999999999764 456778888898888733999999999999
Q ss_pred HHHHHHHHHHHHHhcCc
Q 028647 165 VEEAFQCIAKNALKSGE 181 (206)
Q Consensus 165 i~~l~~~l~~~~~~~~~ 181 (206)
++++|++|.+.+.+...
T Consensus 180 i~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 180 VEEAFLRVATELIMRHG 196 (201)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999976543
No 23
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=3.1e-33 Score=198.40 Aligned_cols=168 Identities=35% Similarity=0.660 Sum_probs=149.5
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
.+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 45679999999999999999999999988878888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN 164 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (206)
++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+. +....+++++++..++ ++++++||++|.|
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g 171 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYSWD----NAQVILVGNKCDLEDE--RVVPAEDGRRLADDLG-FEFFEASAKENIN 171 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccccc--cCCCHHHHHHHHHHcC-CeEEEEECCCCCC
Confidence 9999999999999999998888765422 7899999999999754 4556778888888887 8999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 028647 165 VEEAFQCIAKNALKS 179 (206)
Q Consensus 165 i~~l~~~l~~~~~~~ 179 (206)
+++++++|.+.+.++
T Consensus 172 i~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 172 VKQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998764
No 24
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=3.7e-33 Score=198.76 Aligned_cols=172 Identities=27% Similarity=0.517 Sum_probs=149.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
..+.++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 456799999999999999999999999888777888776664 4667888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647 85 VLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI 163 (206)
Q Consensus 85 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (206)
++|+|++++.+++.+ ..|+..+..... ++|+++|+||+|+.+...+....+++.+++..++...++++||++|.
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 173 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYID-----TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKI 173 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-----TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCC
Confidence 999999999999997 677777765543 78999999999998765577888999999999884449999999999
Q ss_pred CHHHHHHHHHHHHHhcCcc
Q 028647 164 NVEEAFQCIAKNALKSGEE 182 (206)
Q Consensus 164 ~i~~l~~~l~~~~~~~~~~ 182 (206)
|++++|++|.+.+.++++.
T Consensus 174 gi~~l~~~l~~~i~~~~~~ 192 (194)
T 3reg_A 174 GLNEVFEKSVDCIFSNKPV 192 (194)
T ss_dssp SHHHHHHHHHHHHHCSCC-
T ss_pred CHHHHHHHHHHHHHhcCCC
Confidence 9999999999999876553
No 25
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.4e-33 Score=196.66 Aligned_cols=167 Identities=38% Similarity=0.669 Sum_probs=141.8
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
.++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45779999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN 164 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (206)
++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+. +....++..+++...+ ++++++||++|.|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 155 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKIDLEKE--RHVSIQEAESYAESVG-AKHYHTSAKQNKG 155 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGG----GSEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEEBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCC----CCeEEEEEECcccccc--cccCHHHHHHHHHHcC-CeEEEecCCCCCC
Confidence 9999999999999999998887665432 7899999999999764 4566778888888887 8999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 028647 165 VEEAFQCIAKNALK 178 (206)
Q Consensus 165 i~~l~~~l~~~~~~ 178 (206)
+++++++|.+.+.+
T Consensus 156 i~~l~~~l~~~~~~ 169 (170)
T 1z08_A 156 IEELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998864
No 26
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=3.3e-33 Score=194.63 Aligned_cols=166 Identities=39% Similarity=0.703 Sum_probs=142.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46999999999999999999999998888888888888888888888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE 166 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (206)
|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+ +....++..+++...+ ++++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~ 153 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSDMET---RVVTADQGEALAKELG-IPFIESSAKNDDNVN 153 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCTT---CCSCHHHHHHHHHHHT-CCEEECBTTTTBSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECccCCc---CccCHHHHHHHHHHcC-CeEEEEECCCCCCHH
Confidence 99999999999999998888776532 789999999999943 4456778888888887 899999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 028647 167 EAFQCIAKNALKSG 180 (206)
Q Consensus 167 ~l~~~l~~~~~~~~ 180 (206)
+++++|.+.+.++.
T Consensus 154 ~l~~~l~~~~~~~~ 167 (170)
T 1g16_A 154 EIFFTLAKLIQEKI 167 (170)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987654
No 27
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1.1e-33 Score=204.11 Aligned_cols=173 Identities=31% Similarity=0.557 Sum_probs=142.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
.+.++|+|+|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4679999999999999999999999888777777776555 455677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc------cccHHHHHHHHHhcCCCcEEEee
Q 028647 86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR------VVSEKKARAWCASKGNIPYFETS 158 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~~~~~~~S 158 (206)
+|+|++++++++.+. .|+..+..... +.|+++|+||+|+.+.... ....+++.+++..++..+++++|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAP-----NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECS 160 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-----TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEcc
Confidence 999999999999986 78887766543 7899999999999764211 23677888888888755999999
Q ss_pred ccCCCCHHHHHHHHHHHHHhcCcccc
Q 028647 159 AKEGINVEEAFQCIAKNALKSGEEEE 184 (206)
Q Consensus 159 ~~~~~~i~~l~~~l~~~~~~~~~~~~ 184 (206)
|++|.|++++|++|++.+.......+
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~~~~~ 186 (212)
T 2j0v_A 161 SKTQQNVKAVFDTAIKVVLQPPRRKE 186 (212)
T ss_dssp TTTCTTHHHHHHHHHHHHHCC-----
T ss_pred CCCCCCHHHHHHHHHHHHhhhhhhcc
Confidence 99999999999999999987665444
No 28
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=3.5e-33 Score=194.42 Aligned_cols=166 Identities=40% Similarity=0.696 Sum_probs=147.1
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
+.+.++|+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 45679999999999999999999999988888888888888888888898889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN 164 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (206)
++|+|++++.+++.+..|+..+...... ++|+++|+||+|+.+. +....++..+++...+ ++++++||++|.|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g 155 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADLANK--RAVDFQEAQSYADDNS-LLFMETSAKTSMN 155 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECccCccc--cccCHHHHHHHHHHcC-CeEEEEeCCCCCC
Confidence 9999999999999999998888766432 7899999999999754 4556778888888776 8999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028647 165 VEEAFQCIAKNAL 177 (206)
Q Consensus 165 i~~l~~~l~~~~~ 177 (206)
+++++++|.+.+.
T Consensus 156 i~~l~~~i~~~~~ 168 (170)
T 1r2q_A 156 VNEIFMAIAKKLP 168 (170)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988663
No 29
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.7e-33 Score=194.34 Aligned_cols=170 Identities=39% Similarity=0.671 Sum_probs=140.9
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCc
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (206)
..+..++|+|+|++|+|||||+++|.+..+. ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 4567899999999999999999999998875 466788888887777788998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG 162 (206)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 162 (206)
++++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+. +....++..+++...+ ++++++||++|
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 158 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQH----DVALMLLGNKVDSAHE--RVVKREDGEKLAKEYG-LPFMETSAKTG 158 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECCSTTSC--CCSCHHHHHHHHHHHT-CCEEECCTTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEECcccCcc--cccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 999999999999999999998888766532 7899999999999865 5566778888888877 89999999999
Q ss_pred CCHHHHHHHHHHHHHhcC
Q 028647 163 INVEEAFQCIAKNALKSG 180 (206)
Q Consensus 163 ~~i~~l~~~l~~~~~~~~ 180 (206)
.|+++++++|.+.+.++.
T Consensus 159 ~gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 159 LNVDLAFTAIAKELKRRS 176 (180)
T ss_dssp TTHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999886543
No 30
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=7.3e-33 Score=195.75 Aligned_cols=168 Identities=26% Similarity=0.457 Sum_probs=143.9
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
...+.++|+|+|.+|||||||+++|+.+.+...+.++ +..+ ...+.+++..+.+.+|||+|++.+. +++.+|+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 3456799999999999999999999999888777666 3333 4778889999999999999988766 7788999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI 163 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (206)
+++|||++++.+++.+..|+..+..... ..++|+++|+||+|+.....+....+++.+++..++..+++++||++|.
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 165 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRN---ASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGL 165 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSC---GGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTB
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCC
Confidence 9999999999999999999988876532 1278999999999997655577888999999999877899999999999
Q ss_pred CHHHHHHHHHHHHHhcCc
Q 028647 164 NVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 164 ~i~~l~~~l~~~~~~~~~ 181 (206)
|++++|++|.+.+.+.++
T Consensus 166 gv~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 166 NVERVFQDVAQKVVALRK 183 (184)
T ss_dssp THHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999999877643
No 31
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=3.6e-33 Score=194.05 Aligned_cols=165 Identities=35% Similarity=0.725 Sum_probs=147.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|+|++++.+++.+..|+..+..... +.|+++|+||+|+.+. +....++.++++...+ .+++++||+++.|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 154 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKIDLLDD--SCIKNEEAEGLAKRLK-LRFYRTSVKEDLNV 154 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHC-----SCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEECBTTTTBSS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccCcc--cccCHHHHHHHHHHcC-CeEEEEecCCCCCH
Confidence 99999999999999999888877652 7899999999999764 4456778888888887 79999999999999
Q ss_pred HHHHHHHHHHHHh
Q 028647 166 EEAFQCIAKNALK 178 (206)
Q Consensus 166 ~~l~~~l~~~~~~ 178 (206)
++++++|.+.+.+
T Consensus 155 ~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 155 SEVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998864
No 32
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3e-34 Score=203.93 Aligned_cols=171 Identities=35% Similarity=0.635 Sum_probs=152.0
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
..++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 45678999999999999999999999988888888888888888888888888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI 163 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (206)
+++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+. +....++.+.++...+ ++++++||++|.
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 171 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQDWATQIKTYSWD----NAQVILVGNKCDMEEE--RVVPTEKGQLLAEQLG-FDFFEASAKENI 171 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTB
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CeEEEEECCCCC
Confidence 99999999999999999999888765432 7899999999999765 5677788888888887 799999999999
Q ss_pred CHHHHHHHHHHHHHhcCc
Q 028647 164 NVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 164 ~i~~l~~~l~~~~~~~~~ 181 (206)
|++++|++|.+.+.++.+
T Consensus 172 gi~~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 172 SVRQAFERLVDAICDKMS 189 (191)
T ss_dssp SHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 999999999999987654
No 33
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=4.7e-33 Score=193.77 Aligned_cols=166 Identities=39% Similarity=0.665 Sum_probs=146.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 45899999999999999999999998888888888888888888889988999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc-ccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-RVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+... +....++..+++...+ ++++++||++|.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 156 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASK----DIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-LLFFETSAKTGENV 156 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-CEEEECCTTTCTTH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCC----CCcEEEEEECCCccccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 99999999999999999888776532 789999999999975422 4456777788888777 89999999999999
Q ss_pred HHHHHHHHHHHH
Q 028647 166 EEAFQCIAKNAL 177 (206)
Q Consensus 166 ~~l~~~l~~~~~ 177 (206)
+++|++|.+.+.
T Consensus 157 ~~l~~~l~~~i~ 168 (170)
T 1ek0_A 157 NDVFLGIGEKIP 168 (170)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 34
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=1e-32 Score=192.10 Aligned_cols=166 Identities=39% Similarity=0.687 Sum_probs=147.6
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
..+.++|+|+|++|+|||||+++|.+..+...+.++.+.++......+.+....+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35679999999999999999999999998888888888888888888999889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN 164 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (206)
++|+|++++.+++.+..|+..+...... ..|+++|+||+|+.+. +....++...++...+ .+++++||++|.|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~----~~~iilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 155 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPP----SIVVAIAGNKCDLTDV--REVMERDAKDYADSIH-AIFVETSAKNAIN 155 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCT----TSEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEECCccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCcC
Confidence 9999999999999998998888765332 7899999999999764 4566778888888877 8999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028647 165 VEEAFQCIAKNAL 177 (206)
Q Consensus 165 i~~l~~~l~~~~~ 177 (206)
+++++++|.+.+.
T Consensus 156 i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 156 INELFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998763
No 35
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=200.41 Aligned_cols=172 Identities=38% Similarity=0.640 Sum_probs=141.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 56799999999999999999999998888888888888888888888998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|+|++++.+++.+..|+..+...... +.|+++|+||+|+... +....++..+++...+ ++++++||++|.|+
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~SA~~g~gi 175 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLASP----NIVVILCGNKKDLDPE--REVTFLEASRFAQENE-LMFLETSALTGENV 175 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEECTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECCCcccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 999999999999999998888765432 7899999999999754 4456677888888776 89999999999999
Q ss_pred HHHHHHHHHHHHhcCcccc
Q 028647 166 EEAFQCIAKNALKSGEEEE 184 (206)
Q Consensus 166 ~~l~~~l~~~~~~~~~~~~ 184 (206)
+++|++|.+.+.++....+
T Consensus 176 ~~l~~~l~~~i~~~~~~~~ 194 (200)
T 2o52_A 176 EEAFLKCARTILNKIDSGE 194 (200)
T ss_dssp HHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 9999999999987655443
No 36
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=197.61 Aligned_cols=171 Identities=35% Similarity=0.652 Sum_probs=151.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
.++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 35679999999999999999999999988878888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN 164 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (206)
++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+. +....++..+++..++ ++++++||++|.|
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 157 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYSWD----NAQVLLVGNKCDMEDE--RVVSSERGRQLADHLG-FEFFEASAKDNIN 157 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCS----SCEEEEEEECTTCTTS--CCSCHHHHHHHHHHHT-CEEEECBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccCcc--cccCHHHHHHHHHHCC-CeEEEEECCCCCC
Confidence 9999999999999999998888765422 7899999999999765 5566788888888887 7999999999999
Q ss_pred HHHHHHHHHHHHHhcCcc
Q 028647 165 VEEAFQCIAKNALKSGEE 182 (206)
Q Consensus 165 i~~l~~~l~~~~~~~~~~ 182 (206)
++++|++|.+.+.++.+.
T Consensus 158 i~~l~~~l~~~i~~~~~~ 175 (203)
T 1zbd_A 158 VKQTFERLVDVICEKMSE 175 (203)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999988765443
No 37
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=7e-33 Score=197.12 Aligned_cols=168 Identities=34% Similarity=0.646 Sum_probs=148.5
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
.++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 45679999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN 164 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (206)
++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+. +....++.+.++...+ ++++++||++|.|
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 174 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDHAE----ATIVVMLVGNKSDLSQA--REVPTEEARMFAENNG-LLFLETSALDSTN 174 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTTSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEECTTTCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEECCCcccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCC
Confidence 999999999999998899888765432 27899999999999764 4456777888887776 8999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 028647 165 VEEAFQCIAKNALKS 179 (206)
Q Consensus 165 i~~l~~~l~~~~~~~ 179 (206)
+++++++|.+.+.++
T Consensus 175 i~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 175 VELAFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988764
No 38
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=5.9e-33 Score=197.95 Aligned_cols=172 Identities=21% Similarity=0.299 Sum_probs=141.9
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc-chhhhhccCc
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-LGVAFYRGAD 82 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d 82 (206)
.....++|+|+|.+|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|++.+.. ....+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 446679999999999999999999976544434455666666677788899999999999999987665 6677888999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG 162 (206)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 162 (206)
++++|||++++.+++.+..|+..+...... .+.|+++|+||+|+.+. +....+++++++..++ ++++++||++|
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~Sa~~~ 172 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPH---HDLPVILVGNKSDLARS--REVSLEEGRHLAGTLS-CKHIETSAALH 172 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTT---SCCCEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CEEEEEBTTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEeechhcccc--CCcCHHHHHHHHHHhC-CEEEEEcCCCC
Confidence 999999999999999999999887765431 27899999999999765 5567788888888887 79999999999
Q ss_pred CCHHHHHHHHHHHHHhcCc
Q 028647 163 INVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 163 ~~i~~l~~~l~~~~~~~~~ 181 (206)
.|++++|++|++.+..+..
T Consensus 173 ~~v~~lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 173 HNTRELFEGAVRQIRLRRG 191 (195)
T ss_dssp BSHHHHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHHhcC
Confidence 9999999999999876544
No 39
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=9.3e-33 Score=193.99 Aligned_cols=169 Identities=22% Similarity=0.415 Sum_probs=140.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
.+.++|+|+|.+|+|||||+++|.++.+.. +.++.+..+ ...+.+++..+.+.+||++|++. ..+++++|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 457999999999999999999999988876 666666444 66777888889999999999875 45788999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|+|++++++++.+..|+..+....... ..++|+++|+||+|+.+...+....+++.+++...++.+++++||++|.|+
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~-~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 156 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEG-RGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV 156 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSS-SCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence 9999999999999999776665543321 237899999999999654446678888888888876689999999999999
Q ss_pred HHHHHHHHHHHHhcCcc
Q 028647 166 EEAFQCIAKNALKSGEE 182 (206)
Q Consensus 166 ~~l~~~l~~~~~~~~~~ 182 (206)
+++|++|.+.+.+..+.
T Consensus 157 ~~lf~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 157 DRVFQEVAQKVVTLRKQ 173 (178)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999998876544
No 40
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=9.8e-33 Score=191.69 Aligned_cols=164 Identities=30% Similarity=0.561 Sum_probs=142.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (206)
.++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999888777777776555 45667788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167 (206)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (206)
+|++++.+++.+..|+..+...... .+.|+++|+||+|+.+. +....++...++..+++.+++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDT---EDVPMILVGNKCDLEDE--RVVGKEQGQNLARQWCNCAFLESSAKSKINVNE 156 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCC---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCc---CCCcEEEEEECcccccc--ccCCHHHHHHHHHHccCCcEEEecCCCCCCHHH
Confidence 9999999999999998888776432 27899999999999764 556678888888888668999999999999999
Q ss_pred HHHHHHHHHH
Q 028647 168 AFQCIAKNAL 177 (206)
Q Consensus 168 l~~~l~~~~~ 177 (206)
++++|.+.+.
T Consensus 157 l~~~l~~~i~ 166 (167)
T 1c1y_A 157 IFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998873
No 41
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=1.1e-32 Score=192.00 Aligned_cols=166 Identities=22% Similarity=0.306 Sum_probs=131.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc-chhhhhccCcEEEE
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-LGVAFYRGADCCVL 86 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i~ 86 (206)
.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++..+.+.+||+||++.+.. ....+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998777666666667777788888999999999999999988876 66777889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE 166 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (206)
|+|++++++++.+..|+..+....... ++|+++|+||+|+.+. +....++..+++...+ ++++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 155 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHH---DLPVILVGNKSDLARS--REVSLEEGRHLAGTLS-CKHIETSAALHHNTR 155 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTS---CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTTBSHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCC---CCCEEEEeeCcchhhc--ccCCHHHHHHHHHHcC-CcEEEecCccCCCHH
Confidence 999999999999999999887765422 7899999999999754 5677888888988887 899999999999999
Q ss_pred HHHHHHHHHHHhc
Q 028647 167 EAFQCIAKNALKS 179 (206)
Q Consensus 167 ~l~~~l~~~~~~~ 179 (206)
++|++|.+.+..+
T Consensus 156 ~l~~~l~~~i~~~ 168 (169)
T 3q85_A 156 ELFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988664
No 42
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.2e-32 Score=195.29 Aligned_cols=166 Identities=36% Similarity=0.646 Sum_probs=144.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc-cchhhhhccCcEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-SLGVAFYRGADCC 84 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~ 84 (206)
.+.++|+|+|.+|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+. ..+..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 457999999999999999999999998888888888888888888899988999999999999888 7888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC--
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG-- 162 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~-- 162 (206)
++|+|++++.+++.+..|+..+....... +.|+++|+||+|+.+. +....++.++++...+ ++++++||+++
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 171 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLAN---DIPRILVGNKCDLRSA--IQVPTDLAQKFADTHS-MPLFETSAKNPND 171 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCS---CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CCEEECCSSSGGG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc--ceeCHHHHHHHHHHcC-CEEEEEeCCcCCc
Confidence 99999999999999999998888765322 7899999999999754 4566778888888877 89999999999
Q ss_pred -CCHHHHHHHHHHHHH
Q 028647 163 -INVEEAFQCIAKNAL 177 (206)
Q Consensus 163 -~~i~~l~~~l~~~~~ 177 (206)
.|++++|++|.+.+.
T Consensus 172 ~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 172 NDHVEAIFMTLAHKLK 187 (189)
T ss_dssp GSCHHHHHHHHC----
T ss_pred ccCHHHHHHHHHHHHh
Confidence 999999999988774
No 43
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=1.3e-32 Score=195.57 Aligned_cols=172 Identities=41% Similarity=0.666 Sum_probs=148.6
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEEeCCe---------EEEEEEEeCCChhhhccc
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFL-TKEVQFEDR---------LFTLQIWDTAGQERFQSL 73 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~~~~~ 73 (206)
..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++. ...+..++. .+.+.+||+||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4567899999999999999999999998888778888887776 566666665 789999999999999999
Q ss_pred hhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCc
Q 028647 74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIP 153 (206)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (206)
+..+++.+|++++|+|++++.+++.+..|+..+...... .++|+++|+||+|+.+. +....+++.+++...+ ++
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~ 160 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS---ENPDIVLCGNKSDLEDQ--RAVKEEEARELAEKYG-IP 160 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS---SSCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CC
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CC
Confidence 999999999999999999999999999998888766532 27899999999999764 4566778888888887 79
Q ss_pred EEEeeccCCCCHHHHHHHHHHHHHhcCc
Q 028647 154 YFETSAKEGINVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 154 ~~~~S~~~~~~i~~l~~~l~~~~~~~~~ 181 (206)
++++||+++.|+++++++|.+.+.++..
T Consensus 161 ~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 161 YFETSAANGTNISHAIEMLLDLIMKRME 188 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999876543
No 44
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=4e-32 Score=192.32 Aligned_cols=169 Identities=33% Similarity=0.576 Sum_probs=143.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
...++|+|+|++|+|||||+++|.+..+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4579999999999999999999999888777766664 444566778888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|+|++++.+++.+..|+..+....... +.|+++|+||+|+.+ .....++...++...+ ++++++||++|.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi 153 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSE---DVPMVLVGNKCDLPS---RTVDTKQAQDLARSYG-IPFIETSAKTRQGV 153 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCS---CCCEEEEEECTTSSS---CSSCHHHHHHHHHHHT-CCEEECCTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECccCcc---cccCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence 9999999999999999988887764432 789999999999975 4566778888888887 89999999999999
Q ss_pred HHHHHHHHHHHHhcCcc
Q 028647 166 EEAFQCIAKNALKSGEE 182 (206)
Q Consensus 166 ~~l~~~l~~~~~~~~~~ 182 (206)
++++++|.+.+......
T Consensus 154 ~~l~~~l~~~~~~~~~~ 170 (189)
T 4dsu_A 154 DDAFYTLVREIRKHKEK 170 (189)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999999765543
No 45
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=9.8e-33 Score=193.76 Aligned_cols=166 Identities=37% Similarity=0.642 Sum_probs=146.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
.+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 35699999999999999999999999888888888888888888889998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|+|++++.+++.+..|+..+...... ++|+++|+||+|+.+. +....++...++...+ ++++++||++|.|+
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 164 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGS----DVIIMLVGNKTDLSDK--RQVSTEEGERKAKELN-VMFIETSAKAGYNV 164 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTT----SSEEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEEEBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECCccccc--CcCCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence 999999999999999998888765432 7899999999999764 4556777788888777 89999999999999
Q ss_pred HHHHHHHHHHHHh
Q 028647 166 EEAFQCIAKNALK 178 (206)
Q Consensus 166 ~~l~~~l~~~~~~ 178 (206)
++++++|.+.+.+
T Consensus 165 ~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 165 KQLFRRVAAALPG 177 (179)
T ss_dssp HHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987643
No 46
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.5e-32 Score=197.05 Aligned_cols=168 Identities=39% Similarity=0.697 Sum_probs=147.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
...++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999999888888888888888888889998889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|+|++++.+++.+..|+..+...... +.|+++|+||+|+.. +....++..+++..++ ++++++||++|.|+
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 169 (213)
T 3cph_A 98 LVYDVTDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSDMET---RVVTADQGEALAKELG-IPFIESSAKNDDNV 169 (213)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTTT----CSEEEEEEECTTCSS---CCSCHHHHHHHHHHHT-CCEEECBTTTTBSS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCcc---cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 999999999999998998888766432 789999999999943 4556777888888877 79999999999999
Q ss_pred HHHHHHHHHHHHhcCc
Q 028647 166 EEAFQCIAKNALKSGE 181 (206)
Q Consensus 166 ~~l~~~l~~~~~~~~~ 181 (206)
++++++|.+.+.+...
T Consensus 170 ~~l~~~l~~~~~~~~~ 185 (213)
T 3cph_A 170 NEIFFTLAKLIQEKID 185 (213)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998876543
No 47
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=198.00 Aligned_cols=172 Identities=22% Similarity=0.445 Sum_probs=143.5
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc
Q 028647 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (206)
|+...+..++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.
T Consensus 21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 99 (205)
T 1gwn_A 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD 99 (205)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccC
Confidence 445567789999999999999999999999988877777776655 4566778888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CcccccHHHHHHHHHhc
Q 028647 81 ADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG----------NSRVVSEKKARAWCASK 149 (206)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~ 149 (206)
+|++++|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+. ..+.+..+++++++..+
T Consensus 100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (205)
T 1gwn_A 100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 174 (205)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc
Confidence 9999999999999999998 678887766542 7899999999999742 12456778888898888
Q ss_pred CCCcEEEeecc-CCCCHHHHHHHHHHHHHh
Q 028647 150 GNIPYFETSAK-EGINVEEAFQCIAKNALK 178 (206)
Q Consensus 150 ~~~~~~~~S~~-~~~~i~~l~~~l~~~~~~ 178 (206)
+..+++++||+ ++.|++++|+.|.+.+++
T Consensus 175 ~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 175 GAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 76789999999 689999999999998875
No 48
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=9.8e-33 Score=199.56 Aligned_cols=173 Identities=21% Similarity=0.391 Sum_probs=144.6
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++++|++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 35579999999999999999999999998888888887766 45667788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CcccccHHHHHHHHHhcCCCc
Q 028647 85 VLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG----------NSRVVSEKKARAWCASKGNIP 153 (206)
Q Consensus 85 i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~ 153 (206)
++|||++++++++. +..|+..+..... +.|+++|+||+|+.+. ..+....+++..++..++..+
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 177 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYCP-----STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEI 177 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHCT-----TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCE
Confidence 99999999999998 6888888877643 7899999999999753 125577888999999998339
Q ss_pred EEEeeccCCCC-HHHHHHHHHHHHHhcCccc
Q 028647 154 YFETSAKEGIN-VEEAFQCIAKNALKSGEEE 183 (206)
Q Consensus 154 ~~~~S~~~~~~-i~~l~~~l~~~~~~~~~~~ 183 (206)
++++||++|.| ++++|++|++.+.......
T Consensus 178 ~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~~ 208 (214)
T 3q3j_B 178 YLEGSAFTSEKSIHSIFRTASMLCLNKPSPL 208 (214)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHC-----
T ss_pred EEEeccCCCcccHHHHHHHHHHHHhccCcCC
Confidence 99999999998 9999999999998765543
No 49
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=8.7e-33 Score=194.01 Aligned_cols=171 Identities=34% Similarity=0.542 Sum_probs=145.4
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCC-eEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
..+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+.+ ..+.+.+||+||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45679999999999999999999999887766677877778788888876 57899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG 162 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 162 (206)
+++|+|++++++++.+..|+..+........ +.| +++|+||+|+.+. +....++...++...+ ++++++||++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~~~~iilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 157 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESE--TQPLVALVGNKIDLEHM--RTIKPEKHLRFCQENG-FSSHFVSAKTG 157 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHT--CCCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEEECTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccC--CCCeEEEEEEccccccc--cccCHHHHHHHHHHcC-CcEEEEeCCCC
Confidence 9999999999999999888887766432100 334 8999999999764 4566778888888887 89999999999
Q ss_pred CCHHHHHHHHHHHHHhcC
Q 028647 163 INVEEAFQCIAKNALKSG 180 (206)
Q Consensus 163 ~~i~~l~~~l~~~~~~~~ 180 (206)
.|++++|++|.+.+.+..
T Consensus 158 ~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp TTHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHhhh
Confidence 999999999999987654
No 50
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1e-32 Score=197.04 Aligned_cols=170 Identities=27% Similarity=0.427 Sum_probs=141.8
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 45679999999999999999999999888777777766544 34556788888999999999999998899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN 164 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (206)
++|+|++++.+++.+..|+..+...... ..+.|+++|+||+|+.+ +....++...++..++ ++++++||++|.|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 157 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGS--VEDIPVMLVGNKCDETQ---REVDTREAQAVAQEWK-CAFMETSAKMNYN 157 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSC--GGGSCEEEEEECTTCSS---CSSCHHHHHHHHHHHT-CEEEECBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccCCc---cccCHHHHHHHHHHhC-CeEEEEecCCCCC
Confidence 9999999999999888887766554321 12679999999999975 3455677778888877 7899999999999
Q ss_pred HHHHHHHHHHHHHhcCc
Q 028647 165 VEEAFQCIAKNALKSGE 181 (206)
Q Consensus 165 i~~l~~~l~~~~~~~~~ 181 (206)
+++++++|.+.+.++..
T Consensus 158 i~~l~~~l~~~~~~~~~ 174 (199)
T 2gf0_A 158 VKELFQELLTLETRRNM 174 (199)
T ss_dssp HHHHHHHHHHHCSSSCE
T ss_pred HHHHHHHHHHHHhhhhc
Confidence 99999999998866543
No 51
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=3.5e-32 Score=188.92 Aligned_cols=165 Identities=31% Similarity=0.549 Sum_probs=140.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
+.++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 358999999999999999999999888777777766554 4556788888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE 166 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (206)
|+|++++++++.+..|+..+....... +.|+++|+||+|+.+. +....++...++...+ ++++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 155 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK--RQVSVEEAKNRADQWN-VNYVETSAKTRANVD 155 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCT---TSCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEECCTTTCTTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECcccccc--CccCHHHHHHHHHHcC-CeEEEeCCCCCCCHH
Confidence 999999999999999988887766432 7899999999999764 4566778888888887 899999999999999
Q ss_pred HHHHHHHHHHHh
Q 028647 167 EAFQCIAKNALK 178 (206)
Q Consensus 167 ~l~~~l~~~~~~ 178 (206)
+++++|.+.+.+
T Consensus 156 ~l~~~l~~~i~~ 167 (168)
T 1u8z_A 156 KVFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 52
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=194.06 Aligned_cols=169 Identities=25% Similarity=0.427 Sum_probs=139.8
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
.....++|+|+|.+|+|||||+++|++..+...+.++.+..+ .....+++..+.+.+||++|++.+... ..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 345679999999999999999999999988877888877665 456678888899999999999888764 678899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeec-cCC
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA-KEG 162 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~-~~~ 162 (206)
+++|||++++++++.+..|+..+....... ..++|+++|+||+|+.+. +....+++.+++..++ ++++++|| ++|
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~g 170 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKET-QRSIPALLLGNKLDMAQY--RQVTKAEGVALAGRFG-CLFFEVSACLDF 170 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHH-CCCCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEECCSSSCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEECcchhhc--CccCHHHHHHHHHHcC-CcEEEEeecCcc
Confidence 999999999999999999998887664210 017899999999999754 5567788889998887 89999999 899
Q ss_pred CCHHHHHHHHHHHHHh
Q 028647 163 INVEEAFQCIAKNALK 178 (206)
Q Consensus 163 ~~i~~l~~~l~~~~~~ 178 (206)
.|++++|+.|++.+.+
T Consensus 171 ~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 171 EHVQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhh
Confidence 9999999999998754
No 53
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.9e-33 Score=198.15 Aligned_cols=170 Identities=31% Similarity=0.470 Sum_probs=141.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
.+.++|+|+|.+|+|||||+++|.+..+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 4679999999999999999999999998877778777666 666667777788999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|+|++++++++.+..|+..+...... .++|+++|+||+|+.+. +....++...++...+ ++++++||++|.|+
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 174 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGK---TRVPVVLVGNKADLSPE--REVQAVEGKKLAESWG-ATFMESSARENQLT 174 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC--------CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECCTTCHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccCccc--cccCHHHHHHHHHHhC-CeEEEEeCCCCCCH
Confidence 999999999999999998888765332 27899999999999765 5667788888888887 79999999999999
Q ss_pred HHHHHHHHHHHHhcCcc
Q 028647 166 EEAFQCIAKNALKSGEE 182 (206)
Q Consensus 166 ~~l~~~l~~~~~~~~~~ 182 (206)
+++|++|.+.+.+....
T Consensus 175 ~~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 175 QGIFTKVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 99999999999776544
No 54
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=5.8e-32 Score=193.76 Aligned_cols=166 Identities=31% Similarity=0.611 Sum_probs=144.4
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeE----------------------------
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL---------------------------- 56 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 56 (206)
.++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3567999999999999999999999998888888888888888777777655
Q ss_pred ---------EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 028647 57 ---------FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127 (206)
Q Consensus 57 ---------~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (206)
..+.+||+||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... +.|+++|+||+
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~------~~piilv~NK~ 157 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS------NYIIILVANKI 157 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS------CCEEEEEEECT
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC------CCcEEEEEECC
Confidence 789999999999999999999999999999999999999999999988887653 47999999999
Q ss_pred CCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
| ... +....+++.+++...+ ++++++||++|.|+++++++|.+.+.++.
T Consensus 158 D-~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 158 D-KNK--FQVDILEVQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp T-CC---CCSCHHHHHHHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred C-ccc--ccCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 9 332 5567788888888887 89999999999999999999999887643
No 55
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=196.87 Aligned_cols=169 Identities=34% Similarity=0.583 Sum_probs=136.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
.++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 35679999999999999999999999988777788888888888888899889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----CcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG----NSRVVSEKKARAWCASKGNIPYFETSAK 160 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (206)
++|+|++++.+++.+..|+..+...... ++|+++|+||+|+.+. ..+....++...++...+ ++++++||+
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~SA~ 179 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDAAHE----TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG-ALFCETSAK 179 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHC-------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-CEEEECCTT
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccccccccccccccCHHHHHHHHHHcC-CeEEEeeCC
Confidence 9999999999999999998877665432 7899999999999631 124566778888888887 899999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 028647 161 EGINVEEAFQCIAKNALK 178 (206)
Q Consensus 161 ~~~~i~~l~~~l~~~~~~ 178 (206)
+|.|++++|++|.+.+.+
T Consensus 180 ~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 180 DGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp TCTTHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999998854
No 56
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.3e-32 Score=191.71 Aligned_cols=168 Identities=27% Similarity=0.476 Sum_probs=144.7
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 35789999999999999999999999988777777776655 45667788888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------cccccHHHHHHHHHhcCCCc
Q 028647 85 VLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVSEKKARAWCASKGNIP 153 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~ 153 (206)
++|+|++++++++.+. .|+..+..... ++|+++|+||+|+.+.. .+....++..+++..++..+
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 168 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYAP-----NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC 168 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcE
Confidence 9999999999999987 78887776543 78999999999997642 13566788888988887558
Q ss_pred EEEeeccCCCCHHHHHHHHHHHHHh
Q 028647 154 YFETSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 154 ~~~~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
++++||++|.|++++|++|.+.++.
T Consensus 169 ~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 169 YVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999998863
No 57
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=4e-32 Score=190.07 Aligned_cols=167 Identities=28% Similarity=0.397 Sum_probs=131.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh--hccchhhhhccCcEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--FQSLGVAFYRGADCC 84 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~d~~ 84 (206)
+.++|+|+|++|+|||||+++|.+..+...+ ++.+.+.....+.+++..+.+.+||+||++. +......+++.+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 5699999999999999999999988765443 3455666677788889888999999999877 455667788899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN 164 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (206)
++|+|++++.+++.+..|+..+..... ..++|+++|+||+|+.+. +....++.+.++..++ ++++++||++|.|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~g 155 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQ---ADHVPIILVGNKADLARC--REVSVEEGRACAVVFD-CKFIETSATLQHN 155 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC-------CCEEEEEECTTCTTT--CCSCHHHHHHHHHHHT-SEEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhc---cCCCCEEEEEEChhhccc--cccCHHHHHHHHHHcC-CeEEEEecCCCCC
Confidence 999999999999999988887765432 227899999999999865 4566777788888777 8999999999999
Q ss_pred HHHHHHHHHHHHHhcC
Q 028647 165 VEEAFQCIAKNALKSG 180 (206)
Q Consensus 165 i~~l~~~l~~~~~~~~ 180 (206)
++++|++|.+.+..+.
T Consensus 156 i~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 156 VAELFEGVVRQLRLRR 171 (175)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999886543
No 58
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=3.7e-32 Score=192.06 Aligned_cols=169 Identities=30% Similarity=0.529 Sum_probs=145.6
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
..+.++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 34579999999999999999999999888777777766555 45567888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCC
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGIN 164 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 164 (206)
++|+|++++.+++.+..|+..+....... ++|+++|+||+|+.+. +....++..+++..++ ++++++||+++.|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 167 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK--RQVSVEEAKNRAEQWN-VNYVETSAKTRAN 167 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCT---TCCEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc--CccCHHHHHHHHHHcC-CeEEEeCCCCCCC
Confidence 99999999999999999998888766532 6899999999999764 4566788888888887 8999999999999
Q ss_pred HHHHHHHHHHHHHhcC
Q 028647 165 VEEAFQCIAKNALKSG 180 (206)
Q Consensus 165 i~~l~~~l~~~~~~~~ 180 (206)
++++|++|.+.+.+++
T Consensus 168 i~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 168 VDKVFFDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999987644
No 59
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=3.7e-32 Score=188.62 Aligned_cols=164 Identities=32% Similarity=0.547 Sum_probs=142.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (206)
.++|+++|++|+|||||+++|.++.+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999888777777765444 66777888888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167 (206)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (206)
+|++++.+++.+..|+..+....... +.|+++|+||+|+.+. +....++...++...+ .+++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 155 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYE---KVPVILVGNKVDLESE--REVSSSEGRALAEEWG-CPFMETSAKSKTMVDE 155 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTS---CCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-SCEEEECTTCHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECCccccc--ccCCHHHHHHHHHHhC-CCEEEecCCCCcCHHH
Confidence 99999999999999988887765432 7899999999998754 4566777888888876 8999999999999999
Q ss_pred HHHHHHHHHHh
Q 028647 168 AFQCIAKNALK 178 (206)
Q Consensus 168 l~~~l~~~~~~ 178 (206)
++++|.+.+.+
T Consensus 156 l~~~l~~~~~~ 166 (167)
T 1kao_A 156 LFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999988753
No 60
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=9.9e-33 Score=199.83 Aligned_cols=172 Identities=42% Similarity=0.699 Sum_probs=145.7
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCe----------EEEEEEEeCCChhhhccch
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LFTLQIWDTAGQERFQSLG 74 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~~~~ 74 (206)
.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++. .+.+.+||+||++.+...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 466799999999999999999999998887777777777777777777665 6889999999999999999
Q ss_pred hhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcE
Q 028647 75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPY 154 (206)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (206)
..+++.+|++++|+|++++.+++.+..|+..+..... ..++|+++|+||+|+.+. +....+++.+++..++ +++
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~---~~~~piilV~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~ 175 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY---CENPDIVLIGNKADLPDQ--REVNERQARELADKYG-IPY 175 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCT---TTCCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CCE
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---cCCCCEEEEEECCccccc--cccCHHHHHHHHHHCC-CcE
Confidence 9999999999999999999999988888776543321 137899999999999764 4566788888888887 899
Q ss_pred EEeeccCCCCHHHHHHHHHHHHHhcCcc
Q 028647 155 FETSAKEGINVEEAFQCIAKNALKSGEE 182 (206)
Q Consensus 155 ~~~S~~~~~~i~~l~~~l~~~~~~~~~~ 182 (206)
+++||+++.|++++|++|.+.+.++...
T Consensus 176 ~~~Sa~~g~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 176 FETSAATGQNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998775443
No 61
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=3.8e-32 Score=191.99 Aligned_cols=168 Identities=21% Similarity=0.447 Sum_probs=143.1
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45679999999999999999999999988777777776655 45667788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CcccccHHHHHHHHHhcCCCc
Q 028647 85 VLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG----------NSRVVSEKKARAWCASKGNIP 153 (206)
Q Consensus 85 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~ 153 (206)
++|+|++++++++.+ ..|+..+..... +.|+++|+||+|+.+. ..+.+..+++.+++..++..+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 157 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence 999999999999988 678777765542 7899999999999743 124567788889998887679
Q ss_pred EEEeecc-CCCCHHHHHHHHHHHHHh
Q 028647 154 YFETSAK-EGINVEEAFQCIAKNALK 178 (206)
Q Consensus 154 ~~~~S~~-~~~~i~~l~~~l~~~~~~ 178 (206)
++++||+ ++.|++++|+.+.+.+++
T Consensus 158 ~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 158 YIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 9999998 689999999999998875
No 62
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=5.2e-32 Score=187.96 Aligned_cols=164 Identities=24% Similarity=0.345 Sum_probs=120.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (206)
.++|+++|++|+|||||+++|.+..... ..++.+.++ ...+.+++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 5899999999999999999998766442 233444444 45667889999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167 (206)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (206)
+|++++++++.+..|+..+...... .++|+++|+||+|+.+. +....++...+....+ ++++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 153 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQT---DDVPIILVGNKSDLVRS--REVSVDEGRACAVVFD-CKFIETSAALHHNVQA 153 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC------CCCEEEEEECTTCCSS--CCSCHHHHHHHHHHTT-CEEEECBGGGTBSHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEeccccccc--cccCHHHHHHHHHHhC-CcEEEeccCCCCCHHH
Confidence 9999999999999998888764322 27899999999999865 5677888888888887 8999999999999999
Q ss_pred HHHHHHHHHHhc
Q 028647 168 AFQCIAKNALKS 179 (206)
Q Consensus 168 l~~~l~~~~~~~ 179 (206)
+|++|.+.+..+
T Consensus 154 l~~~l~~~~~~~ 165 (166)
T 3q72_A 154 LFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999988654
No 63
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=6e-32 Score=193.48 Aligned_cols=171 Identities=27% Similarity=0.455 Sum_probs=137.7
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
.....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 346689999999999999999999999887777777766544 5567788888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------cccccHHHHHHHHHhcCCC
Q 028647 84 CVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVSEKKARAWCASKGNI 152 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~ 152 (206)
+++|+|++++++++.+. .|+..+..... ++|+++|+||+|+.+.. .+....++...++..++..
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCP-----KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAA 169 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCS-----SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCc
Confidence 99999999999999986 68887776543 78999999999997531 2456678888888888755
Q ss_pred cEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647 153 PYFETSAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 153 ~~~~~S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
+++++||++|.|++++|++|.+.+.+.+
T Consensus 170 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 170 SYIECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999999999987654
No 64
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=1.1e-31 Score=189.51 Aligned_cols=168 Identities=26% Similarity=0.489 Sum_probs=142.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
..++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 569999999999999999999999888777777766544 5566788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------cccccHHHHHHHHHhcCCCcEE
Q 028647 87 VYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVSEKKARAWCASKGNIPYF 155 (206)
Q Consensus 87 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 155 (206)
|+|++++.+++.+. .|+..+..... +.|+++|+||+|+.+.. .+....++...++...+..+++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 157 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 157 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHST-----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCC-----CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence 99999999999887 67777766543 78999999999997642 1345677788888888745999
Q ss_pred EeeccCCCCHHHHHHHHHHHHHhcC
Q 028647 156 ETSAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 156 ~~S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
++||++|.|+++++++|.+.+++..
T Consensus 158 ~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 158 ECSALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred EecCCCccCHHHHHHHHHHHHhccc
Confidence 9999999999999999999986543
No 65
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-31 Score=191.54 Aligned_cols=167 Identities=27% Similarity=0.478 Sum_probs=143.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
.+.++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++. ...+..+++.+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 5579999999999999999999999988877777776655 55567888889999999999887 677888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC-C
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI-N 164 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~ 164 (206)
+|+|++++++++.+..|+..+...... .++|+++|+||+|+.+. +....++..+++..++ ++++++||++|. |
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~~g 177 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKP---KNVTLILVGNKADLDHS--RQVSTEEGEKLATELA-CAFYECSACTGEGN 177 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTT---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-SEEEECCTTTCTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCC---CCCcEEEEEECcccccc--cccCHHHHHHHHHHhC-CeEEEECCCcCCcC
Confidence 999999999999999998888765432 27899999999999764 4566788888888886 899999999999 9
Q ss_pred HHHHHHHHHHHHHhcC
Q 028647 165 VEEAFQCIAKNALKSG 180 (206)
Q Consensus 165 i~~l~~~l~~~~~~~~ 180 (206)
++++|++|.+.+.++.
T Consensus 178 i~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 178 ITEIFYELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999987643
No 66
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=2.4e-31 Score=190.43 Aligned_cols=168 Identities=26% Similarity=0.515 Sum_probs=142.8
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
....++|+|+|.+|+|||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 356799999999999999999999999888777777776664 4467788888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------ccccHHHHHHHHHhcCCCc
Q 028647 85 VLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------RVVSEKKARAWCASKGNIP 153 (206)
Q Consensus 85 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~ 153 (206)
++|+|++++++++.+ ..|+..+..... +.|+++|+||+|+.+... +....++...++...+..+
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 175 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFG 175 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcE
Confidence 999999999999988 577777665442 789999999999976421 2356678888888887558
Q ss_pred EEEeeccCCCCHHHHHHHHHHHHHh
Q 028647 154 YFETSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 154 ~~~~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
++++||++|.|+++++++|.+.+++
T Consensus 176 ~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 176 YLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999998753
No 67
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.4e-31 Score=191.42 Aligned_cols=169 Identities=23% Similarity=0.348 Sum_probs=134.5
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh-hccchhhhhccC
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGA 81 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~ 81 (206)
....++|+|+|.+|+|||||+++|.+... ... .++++.+.....+.+++..+.+.+|||+|++. +......+++.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 35679999999999999999999996432 332 33456666677788899889999999999776 344556677889
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccC
Q 028647 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE 161 (206)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 161 (206)
|++++|||++++.+|+.+..|...+..... ..++|+++|+||+|+.+. +.+..++.+.++..++ ++++++||++
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~---~~~~piilVgNK~DL~~~--r~v~~~e~~~~a~~~~-~~~~e~SAk~ 186 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQ---TEDIPIILVGNKSDLVRC--REVSVSEGRACAVVFD-CKFIETSAAV 186 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGG---GTTSCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCcEEEEEEChHHhcC--ceEeHHHHHHHHHHcC-CEEEEEeCCC
Confidence 999999999999999999888877654321 127899999999999754 4566677777777776 8999999999
Q ss_pred CCCHHHHHHHHHHHHHhcC
Q 028647 162 GINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 162 ~~~i~~l~~~l~~~~~~~~ 180 (206)
|.|++++|++|++.+..+.
T Consensus 187 g~~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 187 QHNVKELFEGIVRQVRLRR 205 (211)
T ss_dssp TBSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999999886544
No 68
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=1.2e-30 Score=180.64 Aligned_cols=163 Identities=32% Similarity=0.577 Sum_probs=140.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEE
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (206)
.++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 48999999999999999999999887776666665444 55667788888999999999999988899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167 (206)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (206)
+|++++.+++.+..|+..+....... +.|+++|+||+|+.+ +....++..+++...+ ++++++|+++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~---~~p~iiv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSD---DVPMVLVGNKSDLAA---RTVESRQAQDLARSYG-IPYIETSAKTRQGVED 154 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCS---CCCEEEEEECTTCSC---CCSCHHHHHHHHHHHT-CCEEEECTTTCTTHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEEchhhhh---cccCHHHHHHHHHHcC-CeEEEecCCCCCCHHH
Confidence 99999999999999988887665422 689999999999976 3456777888888887 8999999999999999
Q ss_pred HHHHHHHHHHh
Q 028647 168 AFQCIAKNALK 178 (206)
Q Consensus 168 l~~~l~~~~~~ 178 (206)
++++|.+.+.+
T Consensus 155 l~~~l~~~~~~ 165 (166)
T 2ce2_X 155 AFYTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 69
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=2.2e-31 Score=192.43 Aligned_cols=170 Identities=34% Similarity=0.540 Sum_probs=124.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
.+.++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4579999999999999999999999887777677665444 556778888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------ccccHHHHHHHHHhcCCCcE
Q 028647 86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------RVVSEKKARAWCASKGNIPY 154 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~ 154 (206)
+|+|++++.+++.+. .|+..+..... ++|+++|+||+|+..... +....+++.+++...+..++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 185 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCK-----KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAY 185 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCS-----SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEE
Confidence 999999999999986 68877766543 789999999999976521 24566778888888874599
Q ss_pred EEeeccCCCCHHHHHHHHHHHHHhcCc
Q 028647 155 FETSAKEGINVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 155 ~~~S~~~~~~i~~l~~~l~~~~~~~~~ 181 (206)
+++||++|.|++++|++|.+.+++.+.
T Consensus 186 ~~~SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 186 LECSARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999987543
No 70
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=4.3e-32 Score=195.00 Aligned_cols=173 Identities=27% Similarity=0.476 Sum_probs=111.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCccceeEEEEEEEeCCe--EEEEEEEeCCChhhhccchhhhhccC
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQFEDR--LFTLQIWDTAGQERFQSLGVAFYRGA 81 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (206)
...++|+|+|++|+|||||+++|.+. .+...+.++.+.++....+.+++. .+.+.+||+||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46789999999999999999999988 666677777777777788888876 78999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC-CCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG-GNSRVVSEKKARAWCASKGNIPYFETSAK 160 (206)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (206)
|++++|+|++++.+++.+..|+..+....... ..++|+++|+||+|+.+ . +....+++.+++..++ ++++++||+
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~~piilv~nK~Dl~~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~ 173 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDR-ERPLRAVLVANKTDLPPQR--HQVRLDMAQDWATTNT-LDFFDVSAN 173 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCT-TSCCEEEEEEECC---------CCCHHHHHHHHHHTT-CEEEECCC-
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhccc-ccCCcEEEEEECcccchhh--ccCCHHHHHHHHHHcC-CEEEEeccC
Confidence 99999999999999999999998887765410 12789999999999976 4 5567788889998887 899999999
Q ss_pred C-CCCHHHHHHHHHHHHHhcCcc
Q 028647 161 E-GINVEEAFQCIAKNALKSGEE 182 (206)
Q Consensus 161 ~-~~~i~~l~~~l~~~~~~~~~~ 182 (206)
+ |.|++++|++|.+.+.+....
T Consensus 174 ~~~~gi~~l~~~i~~~~~~~~~~ 196 (208)
T 2yc2_C 174 PPGKDADAPFLSIATTFYRNYED 196 (208)
T ss_dssp ------CHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHh
Confidence 9 999999999999988765443
No 71
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.6e-31 Score=189.82 Aligned_cols=169 Identities=27% Similarity=0.496 Sum_probs=137.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
...++|+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 45689999999999999999999999888777777766554 34677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------ccccHHHHHHHHHhcCCCcE
Q 028647 86 LVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------RVVSEKKARAWCASKGNIPY 154 (206)
Q Consensus 86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~ 154 (206)
+|+|++++.+++.+ ..|+..+..... +.|+++|+||+|+.+... +....++...++...+..++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 176 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCP-----NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDY 176 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEE
Confidence 99999999999988 677777665442 789999999999976421 23566777888888875589
Q ss_pred EEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647 155 FETSAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 155 ~~~S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
+++||++|.|+++++++|.+.++...
T Consensus 177 ~~~SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 177 LECSAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999987654
No 72
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.3e-31 Score=194.16 Aligned_cols=174 Identities=32% Similarity=0.490 Sum_probs=144.5
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCC-eEEEEEEEeCCChhhhccchhhhhccCc
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (206)
.....++|+|+|.+|+|||||+++|++..+...+.++.+...........+ ..+.+.+||+||++.+...+..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 456789999999999999999999998888777777877766666655543 4478999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG 162 (206)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 162 (206)
++++|+|++++.+++.+..|+..+...... +.|+++|+||+|+.+. +....+....++...+ ++++++||++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 159 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVVCANKIDIKNR--QKISKKLVMEVLKGKN-YEYFEISAKTA 159 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCS----SSCEEEEEECTTCC------CCHHHHHHHTTTCC-CEEEEEBTTTT
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CcEEEEecCCC
Confidence 999999999999999999998888776643 6899999999999764 4566777777777776 89999999999
Q ss_pred CCHHHHHHHHHHHHHhcCcccc
Q 028647 163 INVEEAFQCIAKNALKSGEEEE 184 (206)
Q Consensus 163 ~~i~~l~~~l~~~~~~~~~~~~ 184 (206)
.|++++|++|.+.+........
T Consensus 160 ~gv~~l~~~l~~~~~~~~~~~~ 181 (218)
T 4djt_A 160 HNFGLPFLHLARIFTGRPDLIF 181 (218)
T ss_dssp BTTTHHHHHHHHHHHCCTTCCB
T ss_pred CCHHHHHHHHHHHHhccccccc
Confidence 9999999999999987655443
No 73
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=1.6e-30 Score=184.45 Aligned_cols=168 Identities=33% Similarity=0.551 Sum_probs=133.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
-+.++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 4569999999999999999999999887766666665444 456778888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|+|++++.+++.+..|+..+....... ++|+++|+||+|+.. +....++.++++..++ ++++++|+++|.|+
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 170 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSD---DVPMVLVGNKCDLPT---RTVDTKQAHELAKSYG-IPFIETSAKTRQGV 170 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCS---CCCEEEEEECTTCSC---CCSCHHHHHHHHHHHT-CCEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECCcCCc---ccCCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence 9999999999999999988877665322 689999999999976 3456778888888887 79999999999999
Q ss_pred HHHHHHHHHHHHhcCc
Q 028647 166 EEAFQCIAKNALKSGE 181 (206)
Q Consensus 166 ~~l~~~l~~~~~~~~~ 181 (206)
++++++|.+.+.+.+.
T Consensus 171 ~~l~~~l~~~~~~~~~ 186 (190)
T 3con_A 171 EDAFYTLVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999876543
No 74
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=6.3e-34 Score=203.58 Aligned_cols=168 Identities=39% Similarity=0.730 Sum_probs=138.3
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
..++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 34678999999999999999999999988887778888888888889999998999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI 163 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (206)
+++|+|++++.+++.+..|+..+..... .++|+++|+||+|+.+. +....++...++..++ ++++++||++|.
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~vSA~~g~ 181 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDLTTK--KVVDYTTAKEFADSLG-IPFLETSAKNAT 181 (199)
T ss_dssp EEECC-CCCSHHHHHHHHHHHHHHSCC-----CCSEEEEC-CCSSCC----CCCCSCC-CHHHHTTT-CCBCCCCC---H
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcc----CCCCEEEEEECccCCcc--ccCCHHHHHHHHHHcC-CeEEEEECCCCC
Confidence 9999999999999999999888865443 27899999999999765 4455566677777776 889999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 028647 164 NVEEAFQCIAKNALK 178 (206)
Q Consensus 164 ~i~~l~~~l~~~~~~ 178 (206)
|++++|++|.+.+.+
T Consensus 182 gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 182 NVEQSFMTMAAEIKK 196 (199)
T ss_dssp HHHHHHHHHTTTTTT
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887754
No 75
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.98 E-value=3e-31 Score=190.38 Aligned_cols=166 Identities=25% Similarity=0.470 Sum_probs=138.6
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
..+.++|+|+|.+|+|||||+++|....+...+.++.+. .....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 356799999999999999999999998887777776654 4466677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------ccccHHHHHHHHHhcCCCc
Q 028647 85 VLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------RVVSEKKARAWCASKGNIP 153 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~ 153 (206)
++|+|++++.+++.+. .|+..+..... +.|+++|+||+|+.+... +....++...++...+..+
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 180 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 180 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCS-----SCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcE
Confidence 9999999999999986 78777766542 789999999999976521 2256778888888888677
Q ss_pred EEEeeccCCCCHHHHHHHHHHHH
Q 028647 154 YFETSAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 154 ~~~~S~~~~~~i~~l~~~l~~~~ 176 (206)
++++||++|.|++++|++|.+.+
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 181 YLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTT
T ss_pred EEEeeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998764
No 76
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.98 E-value=1e-31 Score=195.02 Aligned_cols=172 Identities=28% Similarity=0.591 Sum_probs=148.3
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
.....++|+|+|.+|+|||||+++|+.+.+...+.++.+.+.......+++..+.+.+||+||++.+...+..+++++|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 44667999999999999999999988777777778888888888888899999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCC
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGI 163 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 163 (206)
+++|+|++++.+++.+..|+..+..... ++|+++|+||+|+.+... .++...++...+ ++++++||++|.
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~-~~~~~~Sa~~~~ 160 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKDRKV----KAKSIVFHRKKN-LQYYDISAKSNY 160 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHST-----TCCEEEEEECTTSSSCSS----CGGGCCHHHHHT-CEEEECBGGGTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECCccccccc----cHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 9999999999999999999999887753 789999999999976532 123444556665 899999999999
Q ss_pred CHHHHHHHHHHHHHhcCccccc
Q 028647 164 NVEEAFQCIAKNALKSGEEEEI 185 (206)
Q Consensus 164 ~i~~l~~~l~~~~~~~~~~~~~ 185 (206)
|++++|++|.+.+.........
T Consensus 161 gi~~l~~~l~~~l~~~~~~~~~ 182 (221)
T 3gj0_A 161 NFEKPFLWLARKLIGDPNLEFV 182 (221)
T ss_dssp TTTHHHHHHHHHHHTCTTCCEE
T ss_pred CHHHHHHHHHHHHHhCcccccc
Confidence 9999999999999887655433
No 77
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=4.9e-31 Score=183.86 Aligned_cols=165 Identities=28% Similarity=0.427 Sum_probs=137.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
+.++|+|+|++|+|||||+++|.+..+...+.++.+... ......++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 468999999999999999999999887766667665544 3455677888899999999999998889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHH
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVE 166 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 166 (206)
|+|++++.+++.+..|+..+...... ..+.|+++|+||+|+.+. +....++...+....+ ++++++||++|.|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~--~~~~pii~v~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 155 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGD--VESIPIMLVGNKCDESPS--REVQSSEAEALARTWK-CAFMETSAKLNHNVK 155 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC-----CCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBSHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCC--CCCCCEEEEEEccccccc--cccCHHHHHHHHHHhC-CeEEEecCCCCcCHH
Confidence 99999999999888888777665421 127899999999999764 4455667777877776 899999999999999
Q ss_pred HHHHHHHHHHH
Q 028647 167 EAFQCIAKNAL 177 (206)
Q Consensus 167 ~l~~~l~~~~~ 177 (206)
+++++|.+.+.
T Consensus 156 ~l~~~l~~~~~ 166 (172)
T 2erx_A 156 ELFQELLNLEK 166 (172)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHHHh
Confidence 99999998664
No 78
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.98 E-value=8.8e-32 Score=189.52 Aligned_cols=168 Identities=29% Similarity=0.525 Sum_probs=125.8
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
..+.++|+|+|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 34569999999999999999999999887766666665443 23344566677889999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc--------ccccHHHHHHHHHhcCCCcEE
Q 028647 85 VLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS--------RVVSEKKARAWCASKGNIPYF 155 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 155 (206)
++|+|++++.+++.+. .|+..+..... +.|+++|+||+|+.+... .....++..+++..++..+++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 158 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYAP-----GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYI 158 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEE
Confidence 9999999999999987 68777766543 789999999999976521 113677888888888745899
Q ss_pred EeeccCCCCHHHHHHHHHHHHHh
Q 028647 156 ETSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 156 ~~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
++||++|.|++++|++|.+.++.
T Consensus 159 ~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 159 ECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999998753
No 79
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.98 E-value=1.3e-31 Score=190.89 Aligned_cols=168 Identities=23% Similarity=0.327 Sum_probs=133.3
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------CCccceeEEEEEE-EeCCeEEEEEEEeCCChhhhc
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-----------KATIGADFLTKEV-QFEDRLFTLQIWDTAGQERFQ 71 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~ 71 (206)
..++.++|+|+|++|+|||||++.+.+. +...+ .++.+.++....+ .+++..+.+.+|||||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 4567899999999999999999766654 33332 2344444444444 566778899999999999999
Q ss_pred cchhhhhccCcEEEEEEECC------ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHH
Q 028647 72 SLGVAFYRGADCCVLVYDVN------SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAW 145 (206)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 145 (206)
..+..+++++|++++|+|++ +.++++.+..|+..+.. ...++|+++|+||+|+.+. ...++++++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-----~~~~~piilv~NK~Dl~~~----~~~~~~~~~ 159 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-----TLDDVPIVIQVNKRDLPDA----LPVEMVRAV 159 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-----CTTSSCEEEEEECTTSTTC----CCHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-----ccCCCCEEEEEEchhcccc----cCHHHHHHH
Confidence 99999999999999999999 45666777777666521 2238899999999999764 667888888
Q ss_pred HHhcCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCc
Q 028647 146 CASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 146 ~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~ 181 (206)
+...+..+++++||++|.|++++|++|.+.+.++..
T Consensus 160 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 160 VDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp HCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred HHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 888873399999999999999999999999987654
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=3.2e-30 Score=184.08 Aligned_cols=173 Identities=20% Similarity=0.332 Sum_probs=129.1
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCc
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (206)
...+.++|+|+|.+|+|||||+++|.+..+.. .+.++.+... ..+... .+.+.+||+||++.+...+..+++.+|
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d 88 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKG--RVAFTVFDMGGAKKFRGLWETYYDNID 88 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeC--CEEEEEEECCCCHhHHHHHHHHHhcCC
Confidence 45678999999999999999999999998887 6777776433 333333 378999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCC----CCCCCCcEEEEEeCCCCCCCCcccccHHHH-HHHH-HhcCCCcEEE
Q 028647 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASP----SDPDNFPFVVLGNKIDVDGGNSRVVSEKKA-RAWC-ASKGNIPYFE 156 (206)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~-~~~~~~~~~~ 156 (206)
++|+|+|++++++++.+..|+..+...... ....++|+++|+||+|+.+........+.. .... .. ..+++++
T Consensus 89 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 167 (199)
T 4bas_A 89 AVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGD-HPFVIFA 167 (199)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTT-SCEEEEE
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccC-CeeEEEE
Confidence 999999999999999998888887654210 001267999999999998753211111111 1111 22 3478999
Q ss_pred eeccCCCCHHHHHHHHHHHHHhcCc
Q 028647 157 TSAKEGINVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 157 ~S~~~~~~i~~l~~~l~~~~~~~~~ 181 (206)
+||++|.|++++|++|.+.+.++..
T Consensus 168 ~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 168 SNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp CBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred eeCCCccCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999877543
No 81
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=7.3e-30 Score=181.51 Aligned_cols=168 Identities=23% Similarity=0.364 Sum_probs=132.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh-hccchhhhhccCc
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKK--FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGAD 82 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d 82 (206)
.+.++|+++|.+|+|||||+++|.+.. +... .++++.+.....+.+++..+.+.+||++|.+. .......+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 456999999999999999999999633 2332 33456666677788899889999999999765 4445667788899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCC
Q 028647 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEG 162 (206)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 162 (206)
++++|||++++++++.+..|...+...... .+.|+++|+||+|+... +....++...++...+ ++++++||++|
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~---~~~piilV~NK~Dl~~~--r~v~~~~~~~~a~~~~-~~~~e~SA~~g 156 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQT---EDIPIILVGNKSDLVRX--REVSVSEGRAXAVVFD-XKFIETSAAVQ 156 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTT---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCeEEEEEechhhhcc--ccccHHHHHHHHHHhC-CceEEeccccC
Confidence 999999999999999998888777654321 27899999999999753 4556677777777776 78999999999
Q ss_pred CCHHHHHHHHHHHHHhcC
Q 028647 163 INVEEAFQCIAKNALKSG 180 (206)
Q Consensus 163 ~~i~~l~~~l~~~~~~~~ 180 (206)
.|++++|++|.+.+....
T Consensus 157 ~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 157 HNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp BSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhc
Confidence 999999999999886543
No 82
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=1.5e-30 Score=184.37 Aligned_cols=163 Identities=23% Similarity=0.386 Sum_probs=128.5
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 84 (206)
.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++.. +...+ +.+.+||+||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 3567999999999999999999999988877777777766543 33443 6789999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----cCCCcEEEeecc
Q 028647 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----KGNIPYFETSAK 160 (206)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~ 160 (206)
++|+|++++++++.+..|+..+..... ..++|+++|+||+|+.+... .++..+.... ...++++++||+
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~SA~ 167 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQ---LQGIPVLVLGNKRDLPGALD----EKELIEKMNLSAIQDREICCYSISCK 167 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGG---GTTCCEEEEEECTTSTTCCC----HHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcc---cCCCCEEEEEECCCCccCCC----HHHHHHHhChhhhccCCeeEEEEECC
Confidence 999999999999999888887765321 12789999999999976421 2222222111 123679999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 028647 161 EGINVEEAFQCIAKNALK 178 (206)
Q Consensus 161 ~~~~i~~l~~~l~~~~~~ 178 (206)
+|.|++++|++|.+.+..
T Consensus 168 ~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 168 EKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp TCTTHHHHHHHHHHTCC-
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987644
No 83
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=7.7e-30 Score=180.30 Aligned_cols=162 Identities=18% Similarity=0.323 Sum_probs=128.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
++.++|+++|++|+|||||+++|.+.. ...+.++.+.. ...+.+++ ..+.+||+||++.+...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999887 55566666533 34455554 67899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----cCCCcEEEeeccC
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----KGNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~ 161 (206)
+|+|++++++++.+..|+..+..... ..+.|+++|+||+|+.+.. ..++..+.... ...++++++||++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEER---LAGATLLIFANKQDLPGAL----SCNAIQEALELDSIRSHHWRIQGCSAVT 163 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChh---cCCCcEEEEEeCccCCCCC----CHHHHHHHhChhhccCCceEEEEeeCCC
Confidence 99999999999999888887765422 1278999999999997642 22333332221 1236899999999
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 028647 162 GINVEEAFQCIAKNALKS 179 (206)
Q Consensus 162 ~~~i~~l~~~l~~~~~~~ 179 (206)
|.|+++++++|.+.+.++
T Consensus 164 ~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 164 GEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp CTTHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999998664
No 84
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=7.7e-30 Score=177.75 Aligned_cols=161 Identities=20% Similarity=0.348 Sum_probs=126.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
++.++|+|+|++|+|||||+++|..+.+. ...++.+ .....+.+++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 45699999999999999999999988765 3445544 3344555554 67899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHH-----HHhcCCCcEEEeecc
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAW-----CASKGNIPYFETSAK 160 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~S~~ 160 (206)
+|+|++++.+++....|+..+..... ..+.|+++|+||+|+.+... .++..+. .... +++++++||+
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 151 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEE---LRKAILVVFANKQDMEQAMT----SSEMANSLGLPALKDR-KWQIFKTSAT 151 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCCC----HHHHHHHHTGGGCTTS-CEEEEECCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchh---hCCCEEEEEEECCCCcCCCC----HHHHHHHhCchhccCC-ceEEEECcCC
Confidence 99999999999988888877755421 12789999999999976521 1222222 1122 3689999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 028647 161 EGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 161 ~~~~i~~l~~~l~~~~~~~ 179 (206)
+|.|+++++++|.+.+.++
T Consensus 152 ~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 152 KGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp TCTTHHHHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHHhhc
Confidence 9999999999999988653
No 85
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3e-30 Score=182.63 Aligned_cols=164 Identities=18% Similarity=0.264 Sum_probs=124.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
.+.++|+|+|.+|+|||||+++|.++.+. .+.++.+.. ...+.+++ ..+.+||+||++.+...+..+++++|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999987765 445555433 33445555 77899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----cCCCcEEEeeccC
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----KGNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~ 161 (206)
+|+|++++++++....|+..+..... ..+.|+++|+||+|+.+.. ..+++.+.... ..+++++++||++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 161 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFANKQDVKECM----TVAEISQFLKLTSIKDHQWHIQACCALT 161 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGG---GTTCEEEEEEECTTSTTCC----CHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchh---hCCCeEEEEEECCCCcCCC----CHHHHHHHhChhhhcCCCcEEEEccCCC
Confidence 99999999999999998888765421 1278999999999997642 23334333321 1236899999999
Q ss_pred CCCHHHHHHHHHHHHHhcCc
Q 028647 162 GINVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 162 ~~~i~~l~~~l~~~~~~~~~ 181 (206)
|.|+++++++|.+.+....+
T Consensus 162 g~gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 162 GEGLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp TBTHHHHHHHHHHHHCC---
T ss_pred CcCHHHHHHHHHHHHHHHhh
Confidence 99999999999998855433
No 86
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=3.8e-30 Score=178.18 Aligned_cols=158 Identities=17% Similarity=0.324 Sum_probs=120.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEE
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (206)
++|+++|++|+|||||+++|.++.+.. +.++.+ .....+...+ +.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877653 455554 3333444444 67899999999999988999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH-h---cCCCcEEEeeccCCCC
Q 028647 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA-S---KGNIPYFETSAKEGIN 164 (206)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~S~~~~~~ 164 (206)
|++++++++....|+..+..... ..+.|+++|+||+|+.+... .++..+... . ...++++++||++|.|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 148 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDE---LRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRHRNWYIQATCATSGDG 148 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCCC----HHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred ECCCHHHHHHHHHHHHHHHhchh---hcCCeEEEEEECcCCcCCCC----HHHHHHHhCcccccCccEEEEEcccCCCcC
Confidence 99999999998888887765321 12789999999999976421 222222111 1 1235799999999999
Q ss_pred HHHHHHHHHHHHHh
Q 028647 165 VEEAFQCIAKNALK 178 (206)
Q Consensus 165 i~~l~~~l~~~~~~ 178 (206)
+++++++|.+.+.+
T Consensus 149 i~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 149 LYEGLDWLSNQLRN 162 (164)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 87
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=5e-30 Score=180.69 Aligned_cols=162 Identities=22% Similarity=0.343 Sum_probs=123.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
...++|+++|++|+|||||+++|.+..+. .+.++.+. ....+.+++ +.+.+||+||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 56799999999999999999999987542 33445443 334455554 67899999999999988999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----cCCCcEEEeeccC
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----KGNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~ 161 (206)
+|+|++++++++....|+..+..... ..+.|+++|+||+|+.+... .+++.+.... ...++++++||++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEK---LSCVPVLIFANKQDLLTAAP----ASEIAEGLNLHTIRDRVWQIQSCSALT 161 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGG---GTTCCEEEEEECTTSTTCCC----HHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChh---hcCCCEEEEEECcCcccCCC----HHHHHHHhCchhccCCceEEEEccCCC
Confidence 99999999999998888877654321 22789999999999976521 2222222111 1236799999999
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 028647 162 GINVEEAFQCIAKNALKS 179 (206)
Q Consensus 162 ~~~i~~l~~~l~~~~~~~ 179 (206)
|.|++++|++|.+.+.++
T Consensus 162 g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 162 GEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp CTTHHHHHHHHHHTC---
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999877543
No 88
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=1.2e-29 Score=181.30 Aligned_cols=158 Identities=20% Similarity=0.315 Sum_probs=120.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
.+.++|+++|++|+|||||+++|.++.+. .+.++.+.. ...+.+++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 45689999999999999999999987764 344454443 34555666 78899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc----------------
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK---------------- 149 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------------- 149 (206)
+|+|++++++++....|+..+..... ..++|+++|+||+|+.+. ...+++.++....
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDET---IANVPILILGNKIDRPEA----ISEERLREMFGLYGQTTGKGSVSLKELNA 170 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG---GTTSCEEEEEECTTSTTC----CCHHHHHHHHTCTTTCCCSSCCCTTTCCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcc---cCCCcEEEEEECCCcccc----CCHHHHHHHhCcccccccccccccccccC
Confidence 99999999999999998888765422 127899999999999753 4456666665422
Q ss_pred CCCcEEEeeccCCCCHHHHHHHHHHH
Q 028647 150 GNIPYFETSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 150 ~~~~~~~~S~~~~~~i~~l~~~l~~~ 175 (206)
..++++++||++|.|++++|++|.+.
T Consensus 171 ~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 171 RPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999999999999999764
No 89
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.9e-29 Score=177.35 Aligned_cols=164 Identities=18% Similarity=0.306 Sum_probs=128.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
..+.++|+|+|.+|+|||||+++|.+.. +...+.++.+ .....+.+++ ..+.+||+||++.+...+..+++++|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 3567999999999999999999999877 4555555555 4455555665 678999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH--hc--CCCcEEEeec
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA--SK--GNIPYFETSA 159 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~S~ 159 (206)
+++|+|++++.+++.+..|+..+...... ...+.|+++|+||+|+.+. ...+++.++.. .+ .+++++++||
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDI-KHRRIPILFFANKMDLRDA----VTSVKVSQLLCLENIKDKPWHICASDA 168 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTT-TTSCCCEEEEEECTTSTTC----CCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhh-ccCCCeEEEEEeCcCcccC----CCHHHHHHHhChhhccCCceEEEEccC
Confidence 99999999999999998888887665321 0127899999999999764 23444555442 21 2468999999
Q ss_pred cCCCCHHHHHHHHHHHHH
Q 028647 160 KEGINVEEAFQCIAKNAL 177 (206)
Q Consensus 160 ~~~~~i~~l~~~l~~~~~ 177 (206)
++|.|+++++++|.+.+.
T Consensus 169 ~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 169 IKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp TTTBTHHHHHHHHHHHC-
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 999999999999998764
No 90
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=1.3e-28 Score=175.97 Aligned_cols=168 Identities=38% Similarity=0.681 Sum_probs=142.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
+..++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+......++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45799999999999999999999999888788888888888888889998899999999999999888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|+|+.+..+++.+..|+..+..... .+.|+++|+||+|+.+. +....++++.++...+ +.++++|++++.|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~i~~v~nK~Dl~~~--~~~~~~~a~~l~~~~~-~~~~d~Sal~~~~i 155 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDLRHL--RAVPTDEARAFAEKNN-LSFIETSALDSTNV 155 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEECcccccc--cCcCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence 99999999998888888776654422 26799999999999754 4455677888887776 88999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 028647 166 EEAFQCIAKNALKSG 180 (206)
Q Consensus 166 ~~l~~~l~~~~~~~~ 180 (206)
++++++|.+.+.+..
T Consensus 156 ~~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 156 EEAFKNILTEIYRIV 170 (199)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987654
No 91
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=6.7e-30 Score=181.69 Aligned_cols=161 Identities=16% Similarity=0.315 Sum_probs=119.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
.+.++|+|+|++|+|||||+++|..+.+. .+.++.+ .....+...+ +.+.+||+||++.+...+..+++++|+++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 46799999999999999999999987765 3344444 3344455554 67899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----cCCCcEEEeeccC
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----KGNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~ 161 (206)
+|+|++++++++.+..|+..+..... ..+.|+++|+||+|+.+.. ..+++.+.... ...++++++||++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~---~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~SA~~ 174 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDE---LRDAVLLVFANKQDMPNAM----PVSELTDKLGLQHLRSRTWYVQATCATQ 174 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCSSCCEEEEECBTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccc---cCCCeEEEEEECCCCCCCC----CHHHHHHHhCcccccCCceEEEECcCCC
Confidence 99999999999999888887765321 1278999999999997642 12222222111 1135799999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 028647 162 GINVEEAFQCIAKNALK 178 (206)
Q Consensus 162 ~~~i~~l~~~l~~~~~~ 178 (206)
|.|+++++++|.+.+.+
T Consensus 175 g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 175 GTGLYDGLDWLSHELSK 191 (192)
T ss_dssp TBTHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 99999999999988743
No 92
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=2.6e-29 Score=178.38 Aligned_cols=158 Identities=23% Similarity=0.335 Sum_probs=125.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
.+.++|+++|++|+|||||+++|.++.+. .+.++.+.. ...+.+++ +.+.+||+||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 45689999999999999999999988765 344554443 45566666 78899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc-----------CCCcE
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK-----------GNIPY 154 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 154 (206)
+|+|++++++++....|+..+..... ..+.|+++|+||+|+.+. ...+++.++.... ..+++
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAE---LKDVPFVILGNKIDAPNA----VSEAELRSALGLLNTTGSQRIEGQRPVEV 168 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCCEEEEEECTTSTTC----CCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred EEEECCChHHHHHHHHHHHHHHcchh---hcCCCEEEEEECCCCcCC----CCHHHHHHHhCCccccccccccccceEEE
Confidence 99999999999999998888765422 127899999999999763 3455555554321 34679
Q ss_pred EEeeccCCCCHHHHHHHHHHH
Q 028647 155 FETSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 155 ~~~S~~~~~~i~~l~~~l~~~ 175 (206)
+++||++|.|++++|++|.+.
T Consensus 169 ~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 169 FMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEeECCcCCCHHHHHHHHHhh
Confidence 999999999999999999753
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=6.5e-30 Score=180.07 Aligned_cols=160 Identities=19% Similarity=0.288 Sum_probs=122.8
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
...+.++|+|+|.+|+|||||+++|.+..+ ....++.+... ..+.+++ ..+.+||+||++.+...+..+++++|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 345679999999999999999999998876 34455555333 3444555 778999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----cCCCcEEEeec
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----KGNIPYFETSA 159 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~ 159 (206)
+++|+|++++++++.+..|+..+..... ..++|+++|+||+|+.+.. ..+++.+.... ...++++++||
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sa 164 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFANKQDVKECM----TVAEISQFLKLTSIKDHQWHIQACCA 164 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChh---hCCCeEEEEEECCCcccCC----CHHHHHHHhCcccccCCceEEEEccC
Confidence 9999999999999999888887765421 1278999999999997642 23333333211 12358999999
Q ss_pred cCCCCHHHHHHHHHHH
Q 028647 160 KEGINVEEAFQCIAKN 175 (206)
Q Consensus 160 ~~~~~i~~l~~~l~~~ 175 (206)
++|.|++++|++|.+.
T Consensus 165 ~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 165 LTGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTTBTHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHhh
Confidence 9999999999999764
No 94
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=1.8e-29 Score=178.88 Aligned_cols=162 Identities=17% Similarity=0.292 Sum_probs=125.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
++.++|+|+|++|+|||||+++|..+.+.. +.++.+.. ...+.+++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999998776543 44555433 33445554 67899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH----hcCCCcEEEeeccC
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA----SKGNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~S~~~ 161 (206)
+|+|++++++++....|+..+..... ..+.|+++|+||+|+.+... .++..+... ...+++++++||++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDE---LRKSLLLIFANKQDLPDAAS----EAEIAEQLGVSSIMNRTWTIVKSSSKT 167 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCST---TTTCEEEEEEECTTSTTCCC----HHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhh---cCCCeEEEEEECCCCcCCCC----HHHHHHHhChhhccCCceEEEEccCCC
Confidence 99999999999988888777754322 23789999999999976421 222222211 11135799999999
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 028647 162 GINVEEAFQCIAKNALKS 179 (206)
Q Consensus 162 ~~~i~~l~~~l~~~~~~~ 179 (206)
|.|+++++++|.+.+.+.
T Consensus 168 ~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 168 GDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CTTHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhc
Confidence 999999999999998654
No 95
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=8.2e-30 Score=179.61 Aligned_cols=162 Identities=19% Similarity=0.319 Sum_probs=123.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
++.++|+++|++|+|||||+++|.++.+ ..+.++.+.. ...+.+++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4679999999999999999999998766 3445555533 34445555 67899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc----CCCcEEEeeccC
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK----GNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~S~~~ 161 (206)
+|+|++++++++.+..|+..+..... ..+.|+++|+||+|+.+.. ..+++.+..... ..++++++||++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 163 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEE---LQDAALLVFANKQDQPGAL----SASEVSKELNLVELKDRSWSIVASSAIK 163 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSST---TSSCEEEEEEECTTSTTCC----CHHHHHHHTTTTTCCSSCEEEEEEBGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChh---hCCCeEEEEEECCCCCCCC----CHHHHHHHhCcccccCCceEEEEccCCC
Confidence 99999999999999888887765431 2378999999999997642 233333333211 125799999999
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 028647 162 GINVEEAFQCIAKNALKS 179 (206)
Q Consensus 162 ~~~i~~l~~~l~~~~~~~ 179 (206)
|.|+++++++|.+.+.++
T Consensus 164 ~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 164 GEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhc
Confidence 999999999999988653
No 96
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=1.4e-29 Score=178.86 Aligned_cols=166 Identities=26% Similarity=0.428 Sum_probs=121.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCccceeEEEEEEEe---CCeEEEEEEEeCCChhhhccchhhhhccCc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 82 (206)
.++|+|+|++|||||||+++|.+. .+...+.++.+.++....+.+ ++..+.+.+||++|++.+......++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 489999999999999999999984 444556677776665555443 234678999999999999988889999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccccc---HHHHHHHHHhcCCCc----E
Q 028647 83 CCVLVYDVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVS---EKKARAWCASKGNIP----Y 154 (206)
Q Consensus 83 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~----~ 154 (206)
++++|+|++++ .+++.+..|+..+..... +.|+++|+||+|+.+. +... .+....++...+ .+ +
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~ 153 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-----SSPVILVGTHLDVSDE--KQRKACMSKITKELLNKRG-FPAIRDY 153 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-----TCEEEEEEECGGGCCH--HHHHHHHHHHHHHTTTCTT-SCEEEEE
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-----CCcEEEEEECCCcccc--hhhHHHHHHHHHHHHHhcC-Ccchhhe
Confidence 99999999987 578888899888766532 7899999999999753 2221 233445554455 55 9
Q ss_pred EEeeccCCC-CHHHHHHHHHHHHHhcCc
Q 028647 155 FETSAKEGI-NVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 155 ~~~S~~~~~-~i~~l~~~l~~~~~~~~~ 181 (206)
+++||+++. +++++++.|.+.+.+.+.
T Consensus 154 ~~~Sa~~~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 154 HFVNATEESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp EECCTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred EEEecccCchhHHHHHHHHHHHHhcccc
Confidence 999999997 999999999998876443
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=1.9e-28 Score=187.88 Aligned_cols=167 Identities=25% Similarity=0.490 Sum_probs=142.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
...++|+++|.+|+|||||+++|....+...+.++++..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3468999999999999999999999888777777765544 556678888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------cccccHHHHHHHHHhcCCCcE
Q 028647 86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN----------SRVVSEKKARAWCASKGNIPY 154 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~ 154 (206)
+|+|++++.+++.+. .|+..+..... ++|+++|+||+|+.+.. .+....++...++...+..++
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 306 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 306 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhCC-----CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEE
Confidence 999999999999886 67777765543 78999999999996542 145667888889888875599
Q ss_pred EEeeccCCCCHHHHHHHHHHHHHh
Q 028647 155 FETSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 155 ~~~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
+++||++|.|++++|+.|.+.++.
T Consensus 307 ~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 307 LECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEecCCCCcCHHHHHHHHHHHHhc
Confidence 999999999999999999998865
No 98
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.96 E-value=9.6e-28 Score=170.41 Aligned_cols=164 Identities=38% Similarity=0.706 Sum_probs=142.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|...+...+..++..+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 56799999999999999999999999888888899998888888999998888999999999988888888889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
+|+|..+..+++.+..|+..+..... .+.|+++++||+|+.+. +....++++.++...+ +.++++|+.++.|+
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~i~~v~nK~Dl~~~--~~~~~~~a~~l~~~~~-~~~ld~Sald~~~v 179 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDLRHL--RAVPTDEARAFAEKNG-LSFIETSALDSTNV 179 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 99999999988888888776654322 16799999999999754 4455677888887776 88999999999999
Q ss_pred HHHHHHHHHHH
Q 028647 166 EEAFQCIAKNA 176 (206)
Q Consensus 166 ~~l~~~l~~~~ 176 (206)
+++++.|.+.+
T Consensus 180 ~~l~~~l~~~i 190 (191)
T 1oix_A 180 EAAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=4.9e-29 Score=177.76 Aligned_cols=163 Identities=18% Similarity=0.270 Sum_probs=120.2
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE--EEEeC-CeEEEEEEEeCCChhhhccch---hhh
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK--EVQFE-DRLFTLQIWDTAGQERFQSLG---VAF 77 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~i~D~~g~~~~~~~~---~~~ 77 (206)
..++.++|+++|.+|||||||++++.+.... . ++.+.+.... ...+. +..+.+.+||++|++.+.... ..+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-N--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCG-G--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCC-c--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 4567899999999999999999988774322 2 3333333222 22232 455789999999999987776 789
Q ss_pred hccCcEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----cccccHHHHHHHHH---
Q 028647 78 YRGADCCVLVYDVNSM--KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN-----SRVVSEKKARAWCA--- 147 (206)
Q Consensus 78 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~~~~~~~~~~~--- 147 (206)
++++|++++|||++++ +++..+..|+..+..... +.|+++|+||+|+.+.. .+....++..+++.
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP-----DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL 167 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCT-----TCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCC-----CCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence 9999999999999997 666777777776643332 78999999999987632 13445555666766
Q ss_pred -hcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647 148 -SKGNIPYFETSAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 148 -~~~~~~~~~~S~~~~~~i~~l~~~l~~~~ 176 (206)
..+ ++++++||++ .|++++|+.|++.+
T Consensus 168 ~~~~-~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 168 EKLH-LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TTSC-EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hcCC-cceEEEEech-hhHHHHHHHHHHHh
Confidence 444 7899999999 99999999999865
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=3.1e-31 Score=190.25 Aligned_cols=165 Identities=25% Similarity=0.500 Sum_probs=134.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
...++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 5679999999999999999999998887766666655444 445566777788899999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------ccccHHHHHHHHHhcCCCcE
Q 028647 86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS----------RVVSEKKARAWCASKGNIPY 154 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~ 154 (206)
+|+|++++.+++.+. .|+..+..... ++|+++|+||+|+.+... +....++...++...+..++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-----~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 181 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 181 (204)
Confidence 999999999998886 67666654332 789999999999976421 13455667777777764489
Q ss_pred EEeeccCCCCHHHHHHHHHHHH
Q 028647 155 FETSAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 155 ~~~S~~~~~~i~~l~~~l~~~~ 176 (206)
+++||++|.|+++++++|.+.+
T Consensus 182 ~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 182 LECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999999998765
No 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=3.5e-28 Score=175.50 Aligned_cols=168 Identities=18% Similarity=0.270 Sum_probs=116.7
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCe-EEEEEEEeCCChhhhcc-chhhhhccC
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR-LFTLQIWDTAGQERFQS-LGVAFYRGA 81 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~ 81 (206)
+..+.++|+|+|++|+|||||+++|++..+...+.++ +.+... +.+++. .+.+.+|||||++.+.. .+..+++.+
T Consensus 3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 79 (214)
T 2fh5_B 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSA 79 (214)
T ss_dssp -----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhC
Confidence 3456799999999999999999999998877665433 333333 555543 47899999999998887 778889999
Q ss_pred cEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH-------------
Q 028647 82 DCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA------------- 147 (206)
Q Consensus 82 d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~------------- 147 (206)
|++++|+|+++.. ++.....++..++.... ....++|+++|+||+|+.+........+.+.+...
T Consensus 80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~ 158 (214)
T 2fh5_B 80 RAVVFVVDSAAFQREVKDVAEFLYQVLIDSM-ALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL 158 (214)
T ss_dssp EEEEEEEETTTHHHHHHHHHHHHHHHHHHHH-TSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------
T ss_pred CEEEEEEECCCcCHHHHHHHHHHHHHHhhhh-hcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccc
Confidence 9999999999853 45555555444433211 11126899999999999876433333333333222
Q ss_pred --------hcC-------------CCcEEEeeccCC------CCHHHHHHHHHHH
Q 028647 148 --------SKG-------------NIPYFETSAKEG------INVEEAFQCIAKN 175 (206)
Q Consensus 148 --------~~~-------------~~~~~~~S~~~~------~~i~~l~~~l~~~ 175 (206)
..+ .++|+++||++| .|++++|++|.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 159 DSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 011 467999999999 9999999999875
No 102
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=8.3e-28 Score=168.53 Aligned_cols=163 Identities=19% Similarity=0.187 Sum_probs=122.8
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 83 (206)
...+.++|+|+|++|+|||||+++|.+..+...+.++.+.+.....+.+++. .+.+|||||++.+...+...+..+|+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 3456799999999999999999999998887777777666666666777774 56799999999999998889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC--------CCcEE
Q 028647 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG--------NIPYF 155 (206)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 155 (206)
+++|+|++++...... ..+..+.. .++|+++|+||+|+.+.. .++......... ..+++
T Consensus 82 ~i~v~d~~~~~~~~~~-~~l~~~~~-------~~~p~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (178)
T 2lkc_A 82 VILVVAADDGVMPQTV-EAINHAKA-------ANVPIIVAINKMDKPEAN-----PDRVMQELMEYNLVPEEWGGDTIFC 148 (178)
T ss_dssp EEEEEETTCCCCHHHH-HHHHHHGG-------GSCCEEEEEETTTSSCSC-----HHHHHHHHTTTTCCBTTTTSSEEEE
T ss_pred EEEEEECCCCCcHHHH-HHHHHHHh-------CCCCEEEEEECccCCcCC-----HHHHHHHHHhcCcChhHcCCcccEE
Confidence 9999999884322222 12222211 178999999999997641 223333222221 14799
Q ss_pred EeeccCCCCHHHHHHHHHHHHHhcCc
Q 028647 156 ETSAKEGINVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 156 ~~S~~~~~~i~~l~~~l~~~~~~~~~ 181 (206)
++||++|.|+++++++|.+.+.....
T Consensus 149 ~~Sa~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 149 KLSAKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp ECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred EEecCCCCCHHHHHHHHHHhhhhhcc
Confidence 99999999999999999998866544
No 103
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=3.7e-28 Score=185.81 Aligned_cols=162 Identities=16% Similarity=0.309 Sum_probs=119.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
.+.++|+|+|.+|+|||||+++|.+..+... .++.+.. ...+...+ +.+.||||||++.+...+..+++.+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEE--EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceE--EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3467999999999999999999998776433 3444433 33344444 67899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----cCCCcEEEeeccC
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----KGNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~ 161 (206)
+|||++++.+++.+..++..+..... ..++|+++|+||+|+.+... .+++...... ...++++++||++
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilV~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~vSAk~ 310 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDE---LRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRHRNWYIQATCATS 310 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCCC----HHHHHHHHTCTTCCSSCEEEEECBTTT
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhc---cCCCeEEEEEECccCCcccC----HHHHHHHhchhhhhcCCCEEEEEECCC
Confidence 99999999999998887777654332 23789999999999986532 2222222211 1235799999999
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 028647 162 GINVEEAFQCIAKNALKS 179 (206)
Q Consensus 162 ~~~i~~l~~~l~~~~~~~ 179 (206)
|.|++++|++|.+.+.++
T Consensus 311 g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 311 GDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp TBTHHHHHHHHHHHHTC-
T ss_pred CcCHHHHHHHHHHHHHhc
Confidence 999999999999988543
No 104
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=2.2e-27 Score=173.06 Aligned_cols=172 Identities=19% Similarity=0.099 Sum_probs=117.9
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh---------cc
Q 028647 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QS 72 (206)
Q Consensus 2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~ 72 (206)
|......++|+|+|.+|+|||||+++|++..+.....+..+...........+ ..+.+|||||+... ..
T Consensus 23 P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 100 (228)
T 2qu8_A 23 PSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMT 100 (228)
T ss_dssp CSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHH
Confidence 33345679999999999999999999998876533344444445444445555 57899999998321 11
Q ss_pred chhhhhccCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccH---HHHHHHHH
Q 028647 73 LGVAFYRGADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSE---KKARAWCA 147 (206)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~ 147 (206)
.+..++..+|++++|+|++++.+++. ...|+..+.... .+.|+++|+||+|+.+. +.... +....+..
T Consensus 101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~ 173 (228)
T 2qu8_A 101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-----SNKSIVIGFNKIDKCNM--DSLSIDNKLLIKQILD 173 (228)
T ss_dssp HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC------CCCEEEEEECGGGCC----CCCHHHHHHHHHHHH
T ss_pred HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-----cCCcEEEEEeCcccCCc--hhhHHHHHHHHHHHHH
Confidence 22344677899999999999877542 234555444321 27899999999999865 22322 24555555
Q ss_pred hcC-CCcEEEeeccCCCCHHHHHHHHHHHHHhcCcc
Q 028647 148 SKG-NIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182 (206)
Q Consensus 148 ~~~-~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~ 182 (206)
..+ .++++++||++|.|++++|++|.+.+......
T Consensus 174 ~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~ 209 (228)
T 2qu8_A 174 NVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQAE 209 (228)
T ss_dssp HCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHHH
Confidence 442 26899999999999999999999998766543
No 105
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=1.5e-27 Score=169.72 Aligned_cols=161 Identities=20% Similarity=0.198 Sum_probs=109.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC----------hhhhccchh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGV 75 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~ 75 (206)
...++|+|+|++|+|||||+++|++..+.....++.+.+........++ .+.+||||| ++.+...+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 4579999999999999999999998875555455544444333344443 478999999 677777777
Q ss_pred hhhccC---cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCC
Q 028647 76 AFYRGA---DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNI 152 (206)
Q Consensus 76 ~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (206)
.+++.+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|+.+........+++.+........
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED 169 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence 777776 9999999999877665532 1122211 1789999999999987532222234444433333347
Q ss_pred cEEEeeccCCCCHHHHHHHHHHHHH
Q 028647 153 PYFETSAKEGINVEEAFQCIAKNAL 177 (206)
Q Consensus 153 ~~~~~S~~~~~~i~~l~~~l~~~~~ 177 (206)
+++++||++|.|+++++++|.+.+.
T Consensus 170 ~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 170 ELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ceEEEEccCCCCHHHHHHHHHHHhc
Confidence 8999999999999999999998763
No 106
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=1.4e-27 Score=165.65 Aligned_cols=153 Identities=13% Similarity=0.176 Sum_probs=111.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc------cchhhhhc--
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFYR-- 79 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-- 79 (206)
.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||+..+. .....+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 48999999999999999999998776555555555555555566666 578999999987664 23344554
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA 159 (206)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 159 (206)
++|++++|+|+++.+. ...|+..+... +.|+++|+||+|+.... .... +..++...++ .+++++||
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~-------~~p~ilv~nK~Dl~~~~--~~~~-~~~~~~~~~~-~~~~~~SA 146 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLMEM-------GANLLLALNKMDLAKSL--GIEI-DVDKLEKILG-VKVVPLSA 146 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHHT-------TCCEEEEEECHHHHHHT--TCCC-CHHHHHHHHT-SCEEECBG
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHhc-------CCCEEEEEEchHhcccc--Chhh-HHHHHHHHhC-CCEEEEEc
Confidence 7999999999998643 34455555431 68999999999986431 1211 3556666676 88999999
Q ss_pred cCCCCHHHHHHHHHHHH
Q 028647 160 KEGINVEEAFQCIAKNA 176 (206)
Q Consensus 160 ~~~~~i~~l~~~l~~~~ 176 (206)
++|.|++++|++|.+.+
T Consensus 147 ~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 147 AKKMGIEELKKAISIAV 163 (165)
T ss_dssp GGTBSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998765
No 107
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=2e-28 Score=181.29 Aligned_cols=167 Identities=25% Similarity=0.320 Sum_probs=120.6
Q ss_pred ccceeEEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCCCCcc-ceeEEEEEE--------------EeCCeE
Q 028647 4 RRRTLLKVIILGDS---------GVGKTSLMNQYVN---KKFSNQYKATI-GADFLTKEV--------------QFEDRL 56 (206)
Q Consensus 4 ~~~~~~~i~viG~~---------~~GKStli~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~~~ 56 (206)
...+.++|+|+|.+ |||||||+++|++ ..+...+.+++ +.++....+ .+++..
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 34567999999999 9999999999998 45555555554 333322221 135666
Q ss_pred EEEEEEe-----------------------CCChhhhccchhhhhc---------------------cCcEEEEEEECCC
Q 028647 57 FTLQIWD-----------------------TAGQERFQSLGVAFYR---------------------GADCCVLVYDVNS 92 (206)
Q Consensus 57 ~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~ 92 (206)
+.+.+|| ++|++.+...+..+++ ++|++++|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 5555556666666665 7999999999999
Q ss_pred h--hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHH
Q 028647 93 M--KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ 170 (206)
Q Consensus 93 ~--~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~ 170 (206)
+ .+++.+..|+..+...... .++|+++|+||+|+... +.. ++..+++....+++++++||++|.|++++|+
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~---~~~piilV~NK~Dl~~~--~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~ 247 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAK---TKKPIVVVLTKCDEGVE--RYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFS 247 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHH---TTCCEEEEEECGGGBCH--HHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhcc---CCCCEEEEEEccccccc--HHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHH
Confidence 8 9999999998888765211 17899999999999653 222 5677777665458999999999999999999
Q ss_pred HHHHHHH
Q 028647 171 CIAKNAL 177 (206)
Q Consensus 171 ~l~~~~~ 177 (206)
+|.+.+.
T Consensus 248 ~l~~~l~ 254 (255)
T 3c5h_A 248 TLVQLID 254 (255)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998763
No 108
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=4.1e-27 Score=178.55 Aligned_cols=168 Identities=21% Similarity=0.283 Sum_probs=128.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh-----ccchhhhh
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-----QSLGVAFY 78 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~ 78 (206)
..+||+++|.+|+|||||+++|+++.... .+.+|.+.. ...+.+.+ .+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~--~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVE--HSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEE--EEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceE--EEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 35899999999999999999998874331 334444433 33444544 478999999999888 67788889
Q ss_pred ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc----ccHHHHHHHHHhcC--CC
Q 028647 79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV----VSEKKARAWCASKG--NI 152 (206)
Q Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~--~~ 152 (206)
+++|++++|+|++++++++.+..|...+...... .+++|+++|+||+|+.+...+. ...+++.+++..++ .+
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~ 156 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNL 156 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCe
Confidence 9999999999999999999887765444332211 1278999999999998743354 56678888888886 38
Q ss_pred cEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647 153 PYFETSAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 153 ~~~~~S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
+++++||++ .++.++|..+++.++...
T Consensus 157 ~~~~tSa~~-~~i~e~~~~iv~~li~~~ 183 (307)
T 3r7w_A 157 IGFPTSIWD-ESLYKAWSQIVCSLIPNM 183 (307)
T ss_dssp EEEECCTTS-SHHHHHHHHHHHTTCSCH
T ss_pred EEEEeeecC-ChHHHHHHHHHHHHcCCH
Confidence 999999999 899999999888665433
No 109
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.95 E-value=1e-26 Score=165.20 Aligned_cols=159 Identities=20% Similarity=0.241 Sum_probs=117.9
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC----------hhhhccchh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGV 75 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~ 75 (206)
...++|+|+|++|+|||||+++|++..+. ...++.+.+.......... .+.+||+|| ++.+...+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence 45689999999999999999999988733 2333333333233333333 467999999 666777777
Q ss_pred hhhccC---cEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC
Q 028647 76 AFYRGA---DCCVLVYDVNSMKSF--DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG 150 (206)
Q Consensus 76 ~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (206)
.+++.+ |++++|+|+++..+. ..+..|+... +.|+++|+||+|+.+........+++.+++...+
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~----------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL----------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG 166 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc----------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence 777665 999999999875432 2233343332 6899999999999876556666777788887767
Q ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647 151 NIPYFETSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 151 ~~~~~~~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
.++++++||++|.|++++|++|.+.+.+
T Consensus 167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 167 EYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 7899999999999999999999988743
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=5.3e-27 Score=188.99 Aligned_cols=164 Identities=16% Similarity=0.276 Sum_probs=125.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
.+.++|+|+|.+|+|||||+++|.+..+. ...++.+..+ ..+.+.+ +.+.+|||+|++.+...+..+++.+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeE--EEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999988754 3445554433 3344444 67899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----cCCCcEEEeeccC
Q 028647 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----KGNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~ 161 (206)
+|||++++++++.+..|+..+..... ..++|+++|+||+|+.+.. ..+++.+.... ...++++++||++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 467 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDRE---MRDAIILIFANKQDLPDAM----KPHEIQEKLGLTRIRDRNWYVQPSCATS 467 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGG---GTTCEEEEEEECCSSSSCC----CHHHHHHHTTCTTCCSSCEEEEECBTTT
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhh---cCCCcEEEEEECCCCCcCC----CHHHHHHHhchhhhhcCCeEEEEEECCC
Confidence 99999999999999888888765322 2278999999999997642 22222222111 1235699999999
Q ss_pred CCCHHHHHHHHHHHHHhcCc
Q 028647 162 GINVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 162 ~~~i~~l~~~l~~~~~~~~~ 181 (206)
|.|++++|++|.+.+..+.+
T Consensus 468 g~gi~~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 468 GDGLYEGLTWLTSNYKSKLA 487 (497)
T ss_dssp TBTHHHHHHHHHHHCC----
T ss_pred CCCHHHHHHHHHHHHHhcCC
Confidence 99999999999988754433
No 111
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=5.2e-26 Score=172.51 Aligned_cols=167 Identities=20% Similarity=0.131 Sum_probs=127.2
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc----------c
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----------S 72 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~ 72 (206)
+..+.-.|+++|.+|+|||||+|+|++..+.. ...+.++........... ...++.||||||+.... .
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHH
Confidence 45677899999999999999999999988763 334444444444444444 13678999999975433 5
Q ss_pred chhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc-CC
Q 028647 73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK-GN 151 (206)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~ 151 (206)
....+++.+|++++|+|++++.+......|+..+... +.|+++|+||+|+... .....+....+...+ ..
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~-------~~pvilV~NK~Dl~~~--~~~~~~~~~~l~~~~~~~ 155 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL-------NKPVIVVINKIDKIGP--AKNVLPLIDEIHKKHPEL 155 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG-------CCCEEEEEECGGGSSS--GGGGHHHHHHHHHHCTTC
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc-------CCCEEEEEECccCCCC--HHHHHHHHHHHHHhccCC
Confidence 5667788999999999999988777766656655431 7899999999999743 445566777777776 45
Q ss_pred CcEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647 152 IPYFETSAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 152 ~~~~~~S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
.+++++||++|.|+++++++|.+.+....
T Consensus 156 ~~i~~vSA~~g~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 156 TEIVPISALKGANLDELVKTILKYLPEGE 184 (308)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCccCC
Confidence 78999999999999999999999886543
No 112
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=2e-26 Score=160.96 Aligned_cols=155 Identities=22% Similarity=0.279 Sum_probs=112.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc--------hhhh
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAF 77 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 77 (206)
+.++|+++|++|+|||||+++|.+..+. ....++++.++....+.+++. .+.+|||||+..+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4589999999999999999999987643 233455556666677777774 4789999997543211 1245
Q ss_pred hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEe
Q 028647 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 157 (206)
Q Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
++.+|++++|+|++++.+++ ...|+..+..... .++|+++|+||+|+.+.... . .. ..+.+++++
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~----~~~p~ilv~NK~Dl~~~~~~-~--------~~-~~~~~~~~~ 145 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLP----AKLPITVVRNKADITGETLG-M--------SE-VNGHALIRL 145 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSC----TTCCEEEEEECHHHHCCCCE-E--------EE-ETTEEEEEC
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcc----cCCCEEEEEECccCCcchhh-h--------hh-ccCCceEEE
Confidence 78999999999999987765 3466666655432 27899999999998653211 1 01 123789999
Q ss_pred eccCCCCHHHHHHHHHHHHHh
Q 028647 158 SAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 158 S~~~~~~i~~l~~~l~~~~~~ 178 (206)
||++|.|++++|++|.+.+..
T Consensus 146 SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 146 SARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp CTTTCTTHHHHHHHHHHHC--
T ss_pred eCCCCCCHHHHHHHHHHHhhh
Confidence 999999999999999987643
No 113
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=2.3e-26 Score=170.28 Aligned_cols=156 Identities=21% Similarity=0.171 Sum_probs=118.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc------hhhhh-
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFY- 78 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~- 78 (206)
.+.++|+++|.+|+|||||+++|++..+.....++.+.......+...+ ..+.+||+||+..+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 3568999999999999999999998776544455556555555555555 67899999998776542 24454
Q ss_pred -ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEe
Q 028647 79 -RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 157 (206)
Q Consensus 79 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
..+|++++|+|+++.++.. .|...+... ++|+++|+||+|+....... .+..++...++ ++++++
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~-------~~pvilv~NK~Dl~~~~~i~---~~~~~l~~~lg-~~vi~~ 146 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILEM-------EKKVILAMTAIDEAKKTGMK---IDRYELQKHLG-IPVVFT 146 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHTT-------TCCEEEEEECHHHHHHTTCC---BCHHHHHHHHC-SCEEEC
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHhc-------CCCEEEEEECcCCCCccchH---HHHHHHHHHcC-CCEEEE
Confidence 5799999999999875433 344444321 78999999999986532222 23566777777 899999
Q ss_pred eccCCCCHHHHHHHHHHHHH
Q 028647 158 SAKEGINVEEAFQCIAKNAL 177 (206)
Q Consensus 158 S~~~~~~i~~l~~~l~~~~~ 177 (206)
||++|.|+++++++|.+.+.
T Consensus 147 SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 147 SSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHhh
Confidence 99999999999999999875
No 114
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=9.9e-27 Score=164.66 Aligned_cols=159 Identities=22% Similarity=0.256 Sum_probs=114.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC-----------hhhhccchhhh
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-----------QERFQSLGVAF 77 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~ 77 (206)
++|+|+|++|+|||||+++|.+..+...+.++.+.... .+.+. .+.+||+|| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 68999999999999999999998877666666554333 23333 578999999 66677777777
Q ss_pred hcc-CcEEEEEEECCChhhHHHH-HHHHHH--------HHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHH
Q 028647 78 YRG-ADCCVLVYDVNSMKSFDNL-NNWREE--------FLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCA 147 (206)
Q Consensus 78 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (206)
++. ++++++++++.+..+++.+ ..|... +...... .++|+++|+||+|+... . .+...+++.
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~---~~~~~~~~~ 147 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKN--V---QEVINFLAE 147 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSC--H---HHHHHHHHH
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh---cCCceEEEeehHhccCc--H---HHHHHHHHH
Confidence 766 6666666666666666555 444331 2111111 17899999999999765 2 556677777
Q ss_pred hcCC------CcEEEeeccCCCCHHHHHHHHHHHHHhcCc
Q 028647 148 SKGN------IPYFETSAKEGINVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 148 ~~~~------~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~ 181 (206)
.++. .+++++||++|.|++++|++|.+.+.+..+
T Consensus 148 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 148 KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred HhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 7662 247999999999999999999999876544
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=3.7e-26 Score=157.53 Aligned_cols=151 Identities=21% Similarity=0.211 Sum_probs=105.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh-------hccchhhhhcc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRG 80 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~ 80 (206)
++|+++|++|+|||||+++|.+..+. ....++.+.+.....+..++. .+.+||+||+.. +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999987754 233444455555666666664 678999999876 34455667889
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeecc
Q 028647 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (206)
+|++++|+|++++.+... .++..+... .+.|+++|+||+|+.+. .++..++. .++..+++++||+
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~------~~~p~ilv~nK~Dl~~~------~~~~~~~~-~~~~~~~~~~Sa~ 144 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR------KGKPVILVATKVDDPKH------ELYLGPLY-GLGFGDPIPTSSE 144 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH------HTCCEEEEEECCCSGGG------GGGCGGGG-GGSSCSCEECBTT
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh------cCCCEEEEEECcccccc------hHhHHHHH-hCCCCCeEEEecc
Confidence 999999999998644322 222222222 17899999999998754 12233344 4553489999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028647 161 EGINVEEAFQCIAKNA 176 (206)
Q Consensus 161 ~~~~i~~l~~~l~~~~ 176 (206)
+|.|+++++++|.+.+
T Consensus 145 ~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 145 HARGLEELLEAIWERL 160 (161)
T ss_dssp TTBSHHHHHHHHHHHC
T ss_pred cCCChHHHHHHHHHhC
Confidence 9999999999998864
No 116
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=2.9e-26 Score=162.08 Aligned_cols=158 Identities=13% Similarity=0.167 Sum_probs=120.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc------cchhhhhc-
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFYR- 79 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 79 (206)
+.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||+..+. .....++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 568999999999999999999998765555556666666666677766 678999999987764 23445554
Q ss_pred -cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEee
Q 028647 80 -GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETS 158 (206)
Q Consensus 80 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (206)
.+|++++|+|.++. +....|+..+.. .+.|+++|+||+|+.... ... +...++...++ .+++++|
T Consensus 84 ~~~~~~i~v~d~~~~---~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~~--~~~-~~~~~~~~~~~-~~~~~~S 149 (188)
T 2wjg_A 84 EKPDLVVNIVDATAL---ERNLYLTLQLME-------MGANLLLALNKMDLAKSL--GIE-IDVDKLEKILG-VKVVPLS 149 (188)
T ss_dssp HCCSEEEEEEEGGGH---HHHHHHHHHHHT-------TTCCEEEEEECHHHHHHT--TCC-CCHHHHHHHHT-SCEEECB
T ss_pred cCCCEEEEEecchhH---HHHHHHHHHHHh-------cCCCEEEEEEhhhccccc--cch-HHHHHHHHHhC-CCeEEEE
Confidence 49999999999763 445566655543 178999999999986532 111 34566667776 8999999
Q ss_pred ccCCCCHHHHHHHHHHHHHhcC
Q 028647 159 AKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 159 ~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
++++.|++++++++.+.+....
T Consensus 150 a~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTTC-
T ss_pred ecCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999986654
No 117
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.94 E-value=9.9e-27 Score=171.95 Aligned_cols=151 Identities=17% Similarity=0.208 Sum_probs=116.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc----------chhhhh
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----------LGVAFY 78 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~ 78 (206)
.+|+++|.+|+|||||+|+|++........++.+.+.....+.+.+. .+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999988765556677777777777777774 789999999876653 344555
Q ss_pred --ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647 79 --RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE 156 (206)
Q Consensus 79 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
..+|++++|+|+++.+....+..+ +.. . ++|+++|+||+|+.+....... ...+...++ +++++
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~~----~---~~pvilv~NK~Dl~~~~~~~~~---~~~l~~~lg-~~vi~ 145 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---LFE----L---GKPVVVALNMMDIAEHRGISID---TEKLESLLG-CSVIP 145 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---HTT----S---CSCEEEEEECHHHHHHTTCEEC---HHHHHHHHC-SCEEE
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---HHH----c---CCCEEEEEEChhcCCcCCcHHH---HHHHHHHcC-CCEEE
Confidence 789999999999987654443332 221 1 7899999999998754322222 344556666 89999
Q ss_pred eeccCCCCHHHHHHHHHHH
Q 028647 157 TSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 157 ~S~~~~~~i~~l~~~l~~~ 175 (206)
+||++|.|+++++++|.+.
T Consensus 146 ~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 146 IQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CBGGGTBSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999999887
No 118
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=1.1e-26 Score=188.47 Aligned_cols=166 Identities=24% Similarity=0.347 Sum_probs=122.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE------E--EeCCeEEEEEEEeCCChhhhccchhh
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE------V--QFEDRLFTLQIWDTAGQERFQSLGVA 76 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~i~D~~g~~~~~~~~~~ 76 (206)
..+.++|+++|.+|||||||+++|++..+.....++.+.++.... + ..++..+.+.+||+||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 456799999999999999999999999888777788777665442 1 12233578999999999999999999
Q ss_pred hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE 156 (206)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
+++.+|++++|+|+++.+ ....|+..+..... +.|+++|+||+|+.+. +....++.+++....+ .++++
T Consensus 118 ~l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~~~-----~~pvilV~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~ 186 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDS---NKHYWLRHIEKYGG-----KSPVIVVMNKIDENPS--YNIEQKKINERFPAIE-NRFHR 186 (535)
T ss_dssp HHHSSEEEEEEECGGGGG---GHHHHHHHHHHHSS-----SCCEEEEECCTTTCTT--CCCCHHHHHHHCGGGT-TCEEE
T ss_pred HccCCcEEEEEEeCCCch---hHHHHHHHHHHhCC-----CCCEEEEEECCCcccc--cccCHHHHHHHHHhcC-CceEE
Confidence 999999999999998764 45667777766543 6899999999999865 4556777888877776 78999
Q ss_pred eeccCCCCHHHHHHHHHHHHHhcCc
Q 028647 157 TSAKEGINVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 157 ~S~~~~~~i~~l~~~l~~~~~~~~~ 181 (206)
+||++|.|++++++.|.+.+.....
T Consensus 187 vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 187 ISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp CCC-----CTTHHHHHHHHHTCTTS
T ss_pred EecCcccCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999877554
No 119
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.94 E-value=2.9e-26 Score=166.40 Aligned_cols=166 Identities=14% Similarity=0.064 Sum_probs=110.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCccceeEEEEEEEeC-CeEEEEEEEeCCCh----------hhhcc
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQ----------ERFQS 72 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~----------~~~~~ 72 (206)
...++|+|+|.+|+|||||+++|++... .....+..+..... ..+. .....+.+|||||. +.+..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINY--FSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEE--EEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEE--EEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 4568999999999999999999998863 22223333333322 2232 22356889999993 44455
Q ss_pred chhhhhcc---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc
Q 028647 73 LGVAFYRG---ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK 149 (206)
Q Consensus 73 ~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (206)
....++.. +|++++|+|++++.+. ....++..+.. .++|+++|+||+|+..........+...+....+
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~ 176 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP-------TGKPIHSLLTKCDKLTRQESINALRATQKSLDAY 176 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG-------GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh-------cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence 55566655 7889999999875442 22333333332 1789999999999986432222333444444442
Q ss_pred ------CCCcEEEeeccCCCCHHHHHHHHHHHHHhcCc
Q 028647 150 ------GNIPYFETSAKEGINVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 150 ------~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~ 181 (206)
...+++++||++|.|+++++++|.+.+.....
T Consensus 177 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 177 RDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred hhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence 45789999999999999999999998865443
No 120
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.93 E-value=6.2e-27 Score=176.38 Aligned_cols=167 Identities=18% Similarity=0.194 Sum_probs=120.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc---chhhhhccCcE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---LGVAFYRGADC 83 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~ 83 (206)
||+++|..|+|||||++++..+.... ...+|.+.+... ++ ..+.+++|||+|++++.. ....+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887654332 245666655532 22 337899999999999975 35789999999
Q ss_pred EEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc-----ccccHHHHHHHHHhc---CCCc
Q 028647 84 CVLVYDVNSM--KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-----RVVSEKKARAWCASK---GNIP 153 (206)
Q Consensus 84 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~---~~~~ 153 (206)
+|+|||+++. ++.+....|+..+.... +++|+++++||+|+..... +.+..++.+++++.. .++.
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-----~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~ 150 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-----PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVS 150 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHC-----TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEE
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcC-----CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCce
Confidence 9999999987 22333333344333322 2789999999999987533 345566666676641 2488
Q ss_pred EEEeeccCCCCHHHHHHHHHHHHHhcCccccccC
Q 028647 154 YFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL 187 (206)
Q Consensus 154 ~~~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~~~ 187 (206)
|++|||++ .++.+.|..+++.++...+.-+..+
T Consensus 151 f~eTSAkd-~nV~eAFs~iv~~li~~~~~le~~L 183 (331)
T 3r7w_B 151 FYLTSIFD-HSIYEAFSRIVQKLIPELSFLENML 183 (331)
T ss_dssp EECCCSSS-SHHHHHHHHHHTTSSTTHHHHHHHH
T ss_pred EEEeccCC-CcHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999998 5899999999998876655555444
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=2.4e-26 Score=171.70 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=117.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc----------chhhh
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----------LGVAF 77 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~ 77 (206)
.++|+++|.+|+|||||+|+|++........++.+.+.....+...+. .+.+|||||+..+.. ....+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 489999999999999999999988765556667677776777776664 578899999876652 12223
Q ss_pred h--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEE
Q 028647 78 Y--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYF 155 (206)
Q Consensus 78 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (206)
+ +.+|++++|+|+++.+.......++... ++|+++|+||+|+.+...... ....+...++ ++++
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~----------~~p~ivv~NK~Dl~~~~~~~~---~~~~l~~~lg-~~~i 146 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQLLEL----------GIPCIVALNMLDIAEKQNIRI---EIDALSARLG-CPVI 146 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH----------TCCEEEEEECHHHHHHTTEEE---CHHHHHHHHT-SCEE
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHHHHhc----------CCCEEEEEECccchhhhhHHH---HHHHHHHhcC-CCEE
Confidence 2 6899999999999876554444444333 789999999999875422222 2455666666 8999
Q ss_pred EeeccCCCCHHHHHHHHHHHHHhc
Q 028647 156 ETSAKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 156 ~~S~~~~~~i~~l~~~l~~~~~~~ 179 (206)
++||++|.|+++++++|.+.+...
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999998876543
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=3.9e-26 Score=169.99 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=111.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc------cchhhhhc-
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFYR- 79 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 79 (206)
..++|+++|.+|+|||||+++|++........++.+... ....+.. ...+.+|||||+..+. .....++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 358999999999999999999998764444444444333 3333443 4578999999987765 34455554
Q ss_pred -cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEee
Q 028647 80 -GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETS 158 (206)
Q Consensus 80 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (206)
.+|++++|+|+++.+.. ..|...+... ++|+++|+||+|+.... ... .+...+...++ ++++++|
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~~-------~~p~ilv~NK~Dl~~~~--~~~-~~~~~l~~~lg-~~vi~~S 144 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIET-------GIPVTIALNMIDVLDGQ--GKK-INVDKLSYHLG-VPVVATS 144 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHHT-------CSCEEEEEECHHHHHHT--TCC-CCHHHHHHHHT-SCEEECB
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHhc-------CCCEEEEEEChhhCCcC--CcH-HHHHHHHHHcC-CCEEEEE
Confidence 59999999999986543 3444444331 78999999999986432 111 34556666676 8999999
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q 028647 159 AKEGINVEEAFQCIAKNAL 177 (206)
Q Consensus 159 ~~~~~~i~~l~~~l~~~~~ 177 (206)
|++|.|++++|++|.+.+.
T Consensus 145 A~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 145 ALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTTBSHHHHHHHHHHSCT
T ss_pred ccCCCCHHHHHHHHHHHHh
Confidence 9999999999999988653
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=2.9e-25 Score=165.75 Aligned_cols=157 Identities=20% Similarity=0.225 Sum_probs=119.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc------chhhhh--c
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS------LGVAFY--R 79 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~ 79 (206)
.++|+++|++|+|||||+++|++..+.....++.+.+.....+.+.+. .+.+||+||+..+.. ....++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 489999999999999999999988765556677777777777777774 588999999877665 444555 6
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCC-CcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEee
Q 028647 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN-FPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETS 158 (206)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (206)
++|++++|+|+++.+. ...+...+... + .|+++|+||+|+.+...... ....+...++ ++++++|
T Consensus 81 ~~d~vi~v~D~~~~~~---~~~~~~~~~~~-------~~~p~ilv~NK~Dl~~~~~~~~---~~~~l~~~lg-~~~~~~S 146 (271)
T 3k53_A 81 NADVIVDIVDSTCLMR---NLFLTLELFEM-------EVKNIILVLNKFDLLKKKGAKI---DIKKMRKELG-VPVIPTN 146 (271)
T ss_dssp CCSEEEEEEEGGGHHH---HHHHHHHHHHT-------TCCSEEEEEECHHHHHHHTCCC---CHHHHHHHHS-SCEEECB
T ss_pred CCcEEEEEecCCcchh---hHHHHHHHHhc-------CCCCEEEEEEChhcCcccccHH---HHHHHHHHcC-CcEEEEE
Confidence 7999999999998642 23333333322 4 89999999999865321222 2556666776 8999999
Q ss_pred ccCCCCHHHHHHHHHHHHHhcC
Q 028647 159 AKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 159 ~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
+++|.|++++++.+.+.+....
T Consensus 147 a~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 147 AKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp GGGTBTHHHHHHHHHHHHHTCC
T ss_pred eCCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999876543
No 124
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.92 E-value=2e-24 Score=172.61 Aligned_cols=160 Identities=20% Similarity=0.212 Sum_probs=114.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKK-------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFY 78 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 78 (206)
-+.++|+++|++++|||||+++|.+.. ......++.+.+.....+.+++ ..+.+|||||++.+...+...+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 357999999999999999999999765 2233344444444444555555 5789999999999999999999
Q ss_pred ccCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc---CCC
Q 028647 79 RGADCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK---GNI 152 (206)
Q Consensus 79 ~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~ 152 (206)
..+|++++|+|+++ +.+.+.+ ..+. .. ++|+++|+||+|+.+........+++.+++... ...
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l----~~~~-~~------~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 163 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHM----LILD-HF------NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNS 163 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHH----HHHH-HT------TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGC
T ss_pred hhCCEEEEEEecCCCccHHHHHHH----HHHH-Hc------CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccc
Confidence 99999999999987 3333322 1111 11 788999999999986432334455666666544 247
Q ss_pred cEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647 153 PYFETSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 153 ~~~~~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
+++++||++|+|+++++++|.+.+..
T Consensus 164 ~ii~vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 164 SIIPISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHhhcC
Confidence 89999999999999999999998763
No 125
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.92 E-value=1.3e-24 Score=164.02 Aligned_cols=164 Identities=16% Similarity=0.122 Sum_probs=112.6
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh--------hc
Q 028647 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQ 71 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~ 71 (206)
|+.. -+..+|+++|.+|+|||||+|+|++..+.. ...+.++...........+ .++.+|||||... +.
T Consensus 1 m~~~-~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~ 77 (301)
T 1wf3_A 1 MAEK-TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMD 77 (301)
T ss_dssp --CC-CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHH
T ss_pred CCCC-ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHH
Confidence 4554 445689999999999999999999987753 3344444333232333333 6789999999765 44
Q ss_pred cchhhhhccCcEEEEEEECCChhhHHHHHHHH-HHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC
Q 028647 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWR-EEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG 150 (206)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (206)
.....+++.+|++++|+|++++.+.. ..|+ ..+.... .+.|+++|+||+|+.+.. ....+...++ .+
T Consensus 78 ~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-----~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~---~~ 145 (301)
T 1wf3_A 78 QEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-----GKVPILLVGNKLDAAKYP--EEAMKAYHEL---LP 145 (301)
T ss_dssp HHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-----TTSCEEEEEECGGGCSSH--HHHHHHHHHT---ST
T ss_pred HHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-----CCCCEEEEEECcccCCch--HHHHHHHHHh---cC
Confidence 55667788999999999998865433 2343 3333221 268999999999997642 1012223332 34
Q ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647 151 NIPYFETSAKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 151 ~~~~~~~S~~~~~~i~~l~~~l~~~~~~~ 179 (206)
..+++++||++|.|++++++.|.+.+.+.
T Consensus 146 ~~~~~~iSA~~g~gv~~l~~~l~~~l~~~ 174 (301)
T 1wf3_A 146 EAEPRMLSALDERQVAELKADLLALMPEG 174 (301)
T ss_dssp TSEEEECCTTCHHHHHHHHHHHHTTCCBC
T ss_pred cCcEEEEeCCCCCCHHHHHHHHHHhcccC
Confidence 46799999999999999999999877543
No 126
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.92 E-value=5.2e-24 Score=167.45 Aligned_cols=169 Identities=16% Similarity=0.151 Sum_probs=108.2
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCccce--eEEEEEEEe-------------C--C----eEEEE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK---FSNQYKATIGA--DFLTKEVQF-------------E--D----RLFTL 59 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~--~~~~~~~~~-------------~--~----~~~~~ 59 (206)
.+++.++|+++|+.++|||||+++|.+.. +.....+..+. .+....+.. . + ....+
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 83 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV 83 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence 45678999999999999999999998543 22333342222 332222211 1 1 13679
Q ss_pred EEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccH
Q 028647 60 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSE 139 (206)
Q Consensus 60 ~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 139 (206)
.|||+||++.|...+...+..+|++++|+|++++.........+..+ ..+. ..|+++++||+|+.+........
T Consensus 84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~l~-----~~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-EILG-----IDKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHTT-----CCCEEEEEECTTSSCTTTTTTHH
T ss_pred EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-HHcC-----CCeEEEEEEccCCCCHHHHHHHH
Confidence 99999999999888888888899999999999643111111222212 1111 34799999999998754334455
Q ss_pred HHHHHHHHhc--CCCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647 140 KKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 140 ~~~~~~~~~~--~~~~~~~~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
+++.+++..+ ..++++++||++|+|+++++++|.+.+..
T Consensus 158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 158 EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 6677776653 34789999999999999999999987753
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=1.3e-24 Score=172.24 Aligned_cols=163 Identities=18% Similarity=0.180 Sum_probs=114.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh----------hhhccch
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----------ERFQSLG 74 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~ 74 (206)
...++|+++|.+|+|||||+|+|++..+. ....++++.+.....+.+++. .+.+|||||+ +.+....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 35689999999999999999999987654 344556666666666777774 4789999997 3333322
Q ss_pred -hhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHH----HHHHHHHhc
Q 028647 75 -VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK----KARAWCASK 149 (206)
Q Consensus 75 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~~~~~~~ 149 (206)
..+++.+|++++|+|++++.+.+.. .|+..+... +.|+++|+||+|+.+.. ....+ ++.+.....
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~-------~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~l~~~ 320 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA-------GKAVVIVVNKWDAVDKD--ESTMKEFEENIRDHFQFL 320 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT-------TCEEEEEEECGGGSCCC--TTHHHHHHHHHHHHCGGG
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc-------CCcEEEEEECccCCCcc--hHHHHHHHHHHHHhcccC
Confidence 2477889999999999998776664 455544321 78999999999998653 22222 222222233
Q ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647 150 GNIPYFETSAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 150 ~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
.+++++++||++|.|++++++.+.+.+....
T Consensus 321 ~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 321 DYAPILFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp TTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred CCCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence 4589999999999999999999998886543
No 128
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.91 E-value=1.4e-23 Score=164.70 Aligned_cols=169 Identities=15% Similarity=0.150 Sum_probs=118.0
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE----------------EEEe---CCeEEEEEEEeC
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK----------------EVQF---EDRLFTLQIWDT 64 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~----------------~~~~---~~~~~~~~i~D~ 64 (206)
..++.++|+++|++|+|||||+++|++.......... ..+.... .... ......+.+|||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 4567799999999999999999999975432211000 0000000 0000 112367899999
Q ss_pred CChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHH
Q 028647 65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARA 144 (206)
Q Consensus 65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 144 (206)
||++.+...+...+..+|++++|+|++++.++.....++..+... . ..|+++|+||+|+.+........+++.+
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~-----~~~iivviNK~Dl~~~~~~~~~~~~i~~ 156 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-G-----VKNLIIVQNKVDVVSKEEALSQYRQIKQ 156 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-T-----CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-C-----CCCEEEEEECccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999876556666665544332 1 3489999999999865322233344444
Q ss_pred HHHhc--CCCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647 145 WCASK--GNIPYFETSAKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 145 ~~~~~--~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~ 179 (206)
+.... ..++++++||++|+|+++++++|.+.+...
T Consensus 157 ~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 157 FTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 44332 247899999999999999999999877543
No 129
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=5.8e-24 Score=169.21 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=99.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccch--------hh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG--------VA 76 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~ 76 (206)
...++|+++|.+|+|||||+|+|++.... ....++++.+.....+.+++ ..+.+|||||+..+...+ ..
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------C
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 34689999999999999999999987533 44556666667667777777 568999999986654332 34
Q ss_pred hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE 156 (206)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
+++.+|++++|+|++++.+++....+. .+...+. +.|+++|+||+|+.+.. ... .+++... +..++++
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~-~~l~~l~-----~~piIvV~NK~Dl~~~~--~~~---~~~l~~~-~~~~~i~ 376 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIR-ELKAAHP-----AAKFLTVANKLDRAANA--DAL---IRAIADG-TGTEVIG 376 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHH-HHHHHCT-----TSEEEEEEECTTSCTTT--HHH---HHHHHHH-HTSCEEE
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHH-HHHHhcC-----CCCEEEEEECcCCCCcc--chh---HHHHHhc-CCCceEE
Confidence 678899999999999987765332222 2222222 68999999999998753 221 1233333 2268999
Q ss_pred eeccCCCCHHHHHHHHHHHHH
Q 028647 157 TSAKEGINVEEAFQCIAKNAL 177 (206)
Q Consensus 157 ~S~~~~~~i~~l~~~l~~~~~ 177 (206)
+||++|.|+++++++|.+.+.
T Consensus 377 vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 377 ISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp CBTTTTBSHHHHHHHHTHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHh
Confidence 999999999999999999886
No 130
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.91 E-value=1.2e-23 Score=165.54 Aligned_cols=165 Identities=18% Similarity=0.223 Sum_probs=114.4
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCccce--eEEEEEEEe-------------C--C----eEEEE
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK---FSNQYKATIGA--DFLTKEVQF-------------E--D----RLFTL 59 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~--~~~~~~~~~-------------~--~----~~~~~ 59 (206)
.+++.++|+++|+.++|||||+++|++.. +.....+..+. .+....+.. . + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 34678999999999999999999998542 22333343233 232222211 0 1 13679
Q ss_pred EEEeCCChhhhccchhhhhccCcEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc
Q 028647 60 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSM----KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR 135 (206)
Q Consensus 60 ~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (206)
.|||+||++.|...+...+..+|++|+|+|++++ .+.+.+. .+. ... ..|+++|+||+|+.+....
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~-~~~-----~~~iivviNK~Dl~~~~~~ 155 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQ-IIG-----QKNIIIAQNKIELVDKEKA 155 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHH-HHT-----CCCEEEEEECGGGSCHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHH-HcC-----CCcEEEEEECccCCCHHHH
Confidence 9999999999988888888899999999999964 3333222 111 111 3479999999999864322
Q ss_pred cccHHHHHHHHHhc--CCCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647 136 VVSEKKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 136 ~~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
....+++.++.... ..++++++||++|.|+++|+++|.+.+..
T Consensus 156 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 156 LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 23445556665542 34789999999999999999999987754
No 131
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=4.6e-23 Score=159.41 Aligned_cols=162 Identities=21% Similarity=0.221 Sum_probs=118.9
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc---------cchhh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ---------SLGVA 76 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~ 76 (206)
...++|+++|++|+|||||+++|.+........+..+.......+...+ ..+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4568999999999999999999998764433334444444444444444 568999999964322 11223
Q ss_pred hhccCcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcE
Q 028647 77 FYRGADCCVLVYDVNSMK--SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPY 154 (206)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (206)
....+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+... . ..++...++...+ .++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-----~~piilV~NK~Dl~~~--~--~~~~~~~~~~~~~-~~~ 312 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-----DLPFLVVINKIDVADE--E--NIKRLEKFVKEKG-LNP 312 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-----TSCEEEEECCTTTCCH--H--HHHHHHHHHHHTT-CCC
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-----CCCEEEEEECcccCCh--H--HHHHHHHHHHhcC-CCe
Confidence 445699999999998876 67777788877766543 6899999999999764 1 1244555555554 889
Q ss_pred EEeeccCCCCHHHHHHHHHHHHHhc
Q 028647 155 FETSAKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 155 ~~~S~~~~~~i~~l~~~l~~~~~~~ 179 (206)
+++||++|+|+++++++|.+.+...
T Consensus 313 ~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 313 IKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988543
No 132
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=3.1e-25 Score=160.46 Aligned_cols=150 Identities=14% Similarity=0.149 Sum_probs=104.7
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc-
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG- 80 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~- 80 (206)
..+.++|+|+|++|+|||||+++|.+..+.. .+.++.+..+ ....+.+||+||++.+...+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 4567999999999999999999999887654 2333332222 33568899999999998888888877
Q ss_pred ---CcEEEEEEECC-ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccc----cHHHHHHHHHhcCCC
Q 028647 81 ---ADCCVLVYDVN-SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV----SEKKARAWCASKGNI 152 (206)
Q Consensus 81 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~ 152 (206)
+|++++|+|++ +++++.....|+..+..........++|+++|+||+|+........ ..+++..+....+ .
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~-~ 158 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK-K 158 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH-H
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh-c
Confidence 89999999999 8888888888888876653210112789999999999987633221 1344555555554 6
Q ss_pred cEEEeeccCCCC
Q 028647 153 PYFETSAKEGIN 164 (206)
Q Consensus 153 ~~~~~S~~~~~~ 164 (206)
+++++|+++|.+
T Consensus 159 ~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 159 SLNEVERKINEE 170 (218)
T ss_dssp HHHC--------
T ss_pred cccccccccccc
Confidence 789999998765
No 133
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.91 E-value=5.3e-24 Score=162.92 Aligned_cols=163 Identities=18% Similarity=0.163 Sum_probs=119.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh----hccchhhhh---ccC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAFY---RGA 81 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~---~~~ 81 (206)
.+|+|+|.+|||||||+++|+.........+.++.......+.+++. ..+.+||+||..+ +..+...++ ..+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 46899999999999999999987644333344444444445555542 3688999999643 223334444 459
Q ss_pred cEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCC-CcEEEe
Q 028647 82 DCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGN-IPYFET 157 (206)
Q Consensus 82 d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 157 (206)
|++++|+|+++ +++++.+..|..++...... ..++|+++|+||+|+... .+...++...+.. .+++++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~--l~~~p~ilV~NK~Dl~~~------~e~~~~l~~~l~~~~~v~~i 309 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLR--LTERPQIIVANKMDMPEA------AENLEAFKEKLTDDYPVFPI 309 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSS--TTTSCBCBEEECTTSTTH------HHHHHHHHHHCCSCCCBCCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhh--hcCCCEEEEEECccCCCC------HHHHHHHHHHhhcCCCEEEE
Confidence 99999999998 77888888888877654321 127899999999998753 2345556666543 579999
Q ss_pred eccCCCCHHHHHHHHHHHHHhcC
Q 028647 158 SAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 158 S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
||+++.|+++++++|.+.+.+..
T Consensus 310 SA~tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 310 SAVTREGLRELLFEVANQLENTP 332 (342)
T ss_dssp SSCCSSTTHHHHHHHHHHHTSCC
T ss_pred ECCCCcCHHHHHHHHHHHHhhCc
Confidence 99999999999999999986544
No 134
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=1.2e-23 Score=167.54 Aligned_cols=164 Identities=17% Similarity=0.161 Sum_probs=115.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC----------hhhhccch
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLG 74 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~ 74 (206)
...++|+++|.+|+|||||+++|.+... .....++++.+.....+..++. .+.+||||| ++.+....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4568999999999999999999997642 2344555555555566667774 688999999 45555443
Q ss_pred h-hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh----c
Q 028647 75 V-AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS----K 149 (206)
Q Consensus 75 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~ 149 (206)
. .+++.+|++++|+|+++..+ +....++..+.. .+.|+++|+||+|+.+. .....++..+.+.. .
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~-------~~~~~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~ 340 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE-------AGKAVVIVVNKWDAVDK--DESTMKEFEENIRDHFQFL 340 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH-------TTCEEEEEEECGGGSCC--CSSHHHHHHHHHHHHCGGG
T ss_pred HHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH-------cCCCEEEEEEChhcCCC--chHHHHHHHHHHHHhcccC
Confidence 3 47789999999999997544 223344444432 17899999999999865 33334444444433 3
Q ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHHhcCc
Q 028647 150 GNIPYFETSAKEGINVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 150 ~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~ 181 (206)
++++++++||++|.|++++|+.+.+.+..+..
T Consensus 341 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 341 DYAPILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp TTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred CCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 45899999999999999999999998765543
No 135
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=1.7e-24 Score=169.68 Aligned_cols=160 Identities=23% Similarity=0.244 Sum_probs=113.8
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc-------hh
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-------GV 75 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~ 75 (206)
+....++|+|+|++|+|||||+++|++..+. ....++++.+.....+.+.+.. .+.+|||||+..+... ..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence 3456799999999999999999999988763 3445555666666667766653 6899999998766544 34
Q ss_pred hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEE
Q 028647 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYF 155 (206)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (206)
.++..+|++++|+|+..... ...|+..+... ++|+++|+||+|+...... +...++...++ .+++
T Consensus 109 ~~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~-------~~piIvV~NK~Dl~~~~~~----~~~~~l~~~~g-~~v~ 173 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTPY---EDDVVNLFKEM-------EIPFVVVVNKIDVLGEKAE----ELKGLYESRYE-AKVL 173 (423)
T ss_dssp HHHTSCSEEEEECSSSCCHH---HHHHHHHHHHT-------TCCEEEECCCCTTTTCCCT----HHHHHSSCCTT-CCCC
T ss_pred HHHhcCCEEEEEEeCCChHH---HHHHHHHHHhc-------CCCEEEEEeCcCCCCccHH----HHHHHHHHHcC-CCEE
Confidence 57888999999999943332 34455544432 7899999999999876322 45555555565 8999
Q ss_pred EeeccCCCCHHHHHHHHHHHHHhc
Q 028647 156 ETSAKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 156 ~~S~~~~~~i~~l~~~l~~~~~~~ 179 (206)
++||++|.|+++++++|.+.+.+.
T Consensus 174 ~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 174 LVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred EEECCCCCCHHHHHHHHHHhhhhh
Confidence 999999999999999999998654
No 136
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=4e-23 Score=163.82 Aligned_cols=154 Identities=23% Similarity=0.317 Sum_probs=105.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh---------hccchhhhh
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVAFY 78 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~ 78 (206)
.+|+++|.||+|||||+|+|++.... ....++++.+.....+.+.+. .+.+|||||... +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987754 345566666666677777775 578999999653 234456778
Q ss_pred ccCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHH-HHHHHhcCCCcEE
Q 028647 79 RGADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKA-RAWCASKGNIPYF 155 (206)
Q Consensus 79 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~ 155 (206)
+.+|++++|+|+.++.+... +..|+... ++|+++|+||+|+... . ..+. .++. .++..+++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~~----------~~p~ilv~NK~D~~~~----~-~~~~~~~~~-~lg~~~~~ 143 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRKS----------TVDTILVANKAENLRE----F-EREVKPELY-SLGFGEPI 143 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHHH----------TCCEEEEEESCCSHHH----H-HHHTHHHHG-GGSSCSCE
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHc----------CCCEEEEEeCCCCccc----c-HHHHHHHHH-hcCCCCEE
Confidence 99999999999987654332 33333221 7899999999997531 1 1222 3443 45534789
Q ss_pred EeeccCCCCHHHHHHHHHHHHHhcC
Q 028647 156 ETSAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 156 ~~S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
++||.+|.|++++++++.+.+.+..
T Consensus 144 ~iSA~~g~gv~~L~~~i~~~l~~~~ 168 (439)
T 1mky_A 144 PVSAEHNINLDTMLETIIKKLEEKG 168 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred EEeccCCCCHHHHHHHHHHhccccc
Confidence 9999999999999999999987543
No 137
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.90 E-value=4.6e-23 Score=163.15 Aligned_cols=158 Identities=19% Similarity=0.199 Sum_probs=108.2
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCccceeEEEEEEEe
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF-------------------------------SNQYKATIGADFLTKEVQF 52 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 52 (206)
..+..++|+++|++++|||||+++|+.... .....++.+.+.....+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 346689999999999999999999954321 1112234444444444444
Q ss_pred CCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhh---HH---HHHHHHHHHHhhcCCCCCCCCc-EEEEEe
Q 028647 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS---FD---NLNNWREEFLIQASPSDPDNFP-FVVLGN 125 (206)
Q Consensus 53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~p-~ivv~n 125 (206)
.+ ..+.||||||+..|...+...+..+|++|+|+|+++... ++ .....+.... .. ++| +++|+|
T Consensus 93 ~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~-~~------~v~~iIvviN 163 (439)
T 3j2k_7 93 EK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK-TA------GVKHLIVLIN 163 (439)
T ss_pred CC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH-Hc------CCCeEEEEee
Confidence 44 578999999999999999999999999999999997532 11 1111111111 11 667 999999
Q ss_pred CCCCCCCCc----ccccHHHHHHHHHhcC-----CCcEEEeeccCCCCHHHHHH
Q 028647 126 KIDVDGGNS----RVVSEKKARAWCASKG-----NIPYFETSAKEGINVEEAFQ 170 (206)
Q Consensus 126 K~Dl~~~~~----~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~i~~l~~ 170 (206)
|+|+..... .....+++..+...++ .++++++||++|.|++++++
T Consensus 164 K~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 164 KMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 999964321 1223344555555443 36799999999999999665
No 138
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.90 E-value=2e-23 Score=166.23 Aligned_cols=154 Identities=22% Similarity=0.291 Sum_probs=116.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh-hhcc--------chhh
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-RFQS--------LGVA 76 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~ 76 (206)
..++|+++|.||+|||||+|+|++.... ....++++.++....+.+++ ..+.+|||||.. .+.. ....
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHH
Confidence 3489999999999999999999987543 45566667777677777776 468999999986 5432 2346
Q ss_pred hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE 156 (206)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
+++.+|++++|+|++++.+++... ++. .+. +.|+++|+||+|+.+. ...+++.++.. . ..++++
T Consensus 320 ~~~~aD~vl~VvD~s~~~s~~~~~-il~----~l~-----~~piivV~NK~DL~~~----~~~~~~~~~~~-~-~~~~i~ 383 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLDEEDRK-ILE----RIK-----NKRYLVVINKVDVVEK----INEEEIKNKLG-T-DRHMVK 383 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHH-HHH----HHT-----TSSEEEEEEECSSCCC----CCHHHHHHHHT-C-STTEEE
T ss_pred HhhcccEEEEEecCCCCCCHHHHH-HHH----Hhc-----CCCEEEEEECcccccc----cCHHHHHHHhc-C-CCcEEE
Confidence 778999999999999887765432 222 222 6799999999999753 22344444432 2 268999
Q ss_pred eeccCCCCHHHHHHHHHHHHHh
Q 028647 157 TSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 157 ~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
+||++|.|+++++++|.+.+..
T Consensus 384 iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 384 ISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp EEGGGTCCHHHHHHHHHHHTHH
T ss_pred EECCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999997653
No 139
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.90 E-value=1.1e-22 Score=153.77 Aligned_cols=161 Identities=16% Similarity=0.143 Sum_probs=111.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChh---------hhccchh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSLGV 75 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~ 75 (206)
.+..+|+++|++|+|||||+|+|++..+.. ...+.++.......+...+ .++.+|||||+. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 345689999999999999999999876542 2233333322222333344 578899999976 2344456
Q ss_pred hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEE
Q 028647 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYF 155 (206)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (206)
.+++.+|++++|+|+++ -+ ....++...... .+.|+++++||+|+... .....+.+.++...++...++
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~------~~~P~ilvlNK~D~~~~--~~~~~~~l~~l~~~~~~~~~i 152 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WT--PDDEMVLNKLRE------GKAPVILAVNKVDNVQE--KADLLPHLQFLASQMNFLDIV 152 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CC--HHHHHHHHHHHS------SSSCEEEEEESTTTCCC--HHHHHHHHHHHHTTSCCSEEE
T ss_pred HHHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHh------cCCCEEEEEECcccCcc--HHHHHHHHHHHHHhcCcCceE
Confidence 67788999999999976 22 222333222221 16899999999998762 233445566666666644799
Q ss_pred EeeccCCCCHHHHHHHHHHHHHhc
Q 028647 156 ETSAKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 156 ~~S~~~~~~i~~l~~~l~~~~~~~ 179 (206)
++||+++.|++++++.+.+.+...
T Consensus 153 ~iSA~~g~~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 153 PISAETGLNVDTIAAIVRKHLPEA 176 (301)
T ss_dssp ECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred EEECCCCCCHHHHHHHHHHhCCcC
Confidence 999999999999999999877543
No 140
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.90 E-value=6.9e-23 Score=166.65 Aligned_cols=161 Identities=18% Similarity=0.260 Sum_probs=111.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCC--CCC---------C--CCCccceeEE--EEEEEe---CCeEEEEEEEeCCChh
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKK--FSN---------Q--YKATIGADFL--TKEVQF---EDRLFTLQIWDTAGQE 68 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~--~~~---------~--~~~~~~~~~~--~~~~~~---~~~~~~~~i~D~~g~~ 68 (206)
+..+|+++|+.++|||||+++|+... +.. . .+...+.++. ...+.+ ++..+.+.||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46899999999999999999998632 110 0 0111222222 222222 4556889999999999
Q ss_pred hhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHh
Q 028647 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS 148 (206)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 148 (206)
.|...+...++.+|++++|+|++++.+.+....|..... . ++|+++|+||+|+.+.. ..+...++...
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~---~-----~ipiIvViNKiDl~~a~----~~~v~~ei~~~ 150 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME---M-----DLEVVPVLNKIDLPAAD----PERVAEEIEDI 150 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH---T-----TCEEEEEEECTTSTTCC----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---C-----CCCEEEeeeccCccccc----HHHHHHHHHHH
Confidence 999999999999999999999998777666666654432 1 78999999999998753 22333444444
Q ss_pred cC--CCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647 149 KG--NIPYFETSAKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 149 ~~--~~~~~~~S~~~~~~i~~l~~~l~~~~~~~ 179 (206)
++ ...++++||++|.|+++++++|.+.+...
T Consensus 151 lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 151 VGIDATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp TCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred hCCCcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 44 23589999999999999999999988653
No 141
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.89 E-value=2.5e-22 Score=163.15 Aligned_cols=164 Identities=17% Similarity=0.262 Sum_probs=115.2
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCC--CCC-------------CCCCccceeEEEEEEEe---CCeEEEEEEEeCCC
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK--FSN-------------QYKATIGADFLTKEVQF---EDRLFTLQIWDTAG 66 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g 66 (206)
.++..+|+++|+.++|||||+++|+... +.. ....+.+.......+.+ ++..+.+.||||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 3567899999999999999999997531 110 00111111111122222 45568899999999
Q ss_pred hhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHH
Q 028647 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWC 146 (206)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (206)
+..|...+...++.+|++++|+|++++.+.+....|..... . ++|+++|+||+|+.+.. ..+...++.
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~-----~ipiIvviNKiDl~~a~----~~~v~~el~ 150 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---Q-----DLVIIPVINKIDLPSAD----VDRVKKQIE 150 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---T-----TCEEEEEEECTTSTTCC----HHHHHHHHH
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---C-----CCCEEEEEeccCccccC----HHHHHHHHH
Confidence 99999888889999999999999999877777666655432 1 78999999999998653 123334454
Q ss_pred HhcCC--CcEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647 147 ASKGN--IPYFETSAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 147 ~~~~~--~~~~~~S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
..++. ..++++||++|.|+++++++|.+.++...
T Consensus 151 ~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 151 EVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp HTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 44441 25899999999999999999999886543
No 142
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.89 E-value=3.7e-25 Score=177.57 Aligned_cols=164 Identities=19% Similarity=0.204 Sum_probs=117.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEE
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (206)
++++|+++|++++|||||+++|.+..+.....++.+.++....+...+. ..+.||||||++.|...+...+..+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 4578999999999999999999977655555555555544444434222 367899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHH---HHhc-CCCcEEEeeccCC
Q 028647 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAW---CASK-GNIPYFETSAKEG 162 (206)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~S~~~~ 162 (206)
|+|++++...+....+ ..+. .. ++|+++++||+|+.+...... .++...+ ...+ +..+++++||++|
T Consensus 82 VVDa~dg~~~qt~e~l-~~~~---~~----~vPiIVViNKiDl~~~~~~~v-~~~l~~~~~~~e~~~~~~~iv~vSAktG 152 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-QHAK---DA----HVPIVLAINKCDKAEADPEKV-KKELLAYDVVCEDYGGDVQAVHVSALTG 152 (537)
T ss_dssp ECBSSSCCCHHHHHHH-HHHH---TT----TCCEEECCBSGGGTTTSCCSS-SSHHHHTTSCCCCSSSSEEECCCCSSSS
T ss_pred EEECCCCccHHHHHHH-HHHH---Hc----CCcEEEEEecccccccchHHH-HHHHHhhhhhHHhcCCCceEEEEECCCC
Confidence 9999986654444332 2221 11 789999999999976432222 2222221 1112 1357999999999
Q ss_pred CCHHHHHHHHHHHHHhcC
Q 028647 163 INVEEAFQCIAKNALKSG 180 (206)
Q Consensus 163 ~~i~~l~~~l~~~~~~~~ 180 (206)
.|+++++++|...+....
T Consensus 153 ~GI~eLle~I~~l~~~~~ 170 (537)
T 3izy_P 153 ENMMALAEATIALAEMLE 170 (537)
T ss_dssp CSSHHHHHHHHHHHTTCC
T ss_pred CCchhHHHHHHHhhhccc
Confidence 999999999998875433
No 143
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=1.8e-23 Score=165.71 Aligned_cols=154 Identities=16% Similarity=0.244 Sum_probs=100.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChh--------hhccchhhhhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSLGVAFYR 79 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~ 79 (206)
.+|+++|.+|+|||||+|+|++..+.. ...++.+.+.......+.+ ..+.+|||||+. .+...+..+++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 689999999999999999999876542 2333444344344444444 468999999975 55666778889
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA 159 (206)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 159 (206)
.+|++++|+|+.++.+... .++..++.. .++|+++|+||+|+..... . ..++. .++...++++||
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~~------~~~pvilv~NK~D~~~~~~--~----~~~~~-~lg~~~~~~iSA 146 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILYR------TKKPVVLAVNKLDNTEMRA--N----IYDFY-SLGFGEPYPISG 146 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHTT------CCSCEEEEEECCCC-------C----CCSSG-GGSSCCCEECBT
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHHH------cCCCEEEEEECccCccchh--h----HHHHH-HcCCCCeEEEeC
Confidence 9999999999998765443 233333321 1789999999999875421 1 11122 234347899999
Q ss_pred cCCCCHHHHHHHHHHHHHhc
Q 028647 160 KEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 160 ~~~~~i~~l~~~l~~~~~~~ 179 (206)
.+|.|++++++++.+.+.+.
T Consensus 147 ~~g~gv~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 147 THGLGLGDLLDAVAEHFKNI 166 (436)
T ss_dssp TTTBTHHHHHHHHHHTGGGC
T ss_pred cCCCChHHHHHHHHHhcCcc
Confidence 99999999999999988653
No 144
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.89 E-value=8.2e-22 Score=152.17 Aligned_cols=165 Identities=19% Similarity=0.102 Sum_probs=108.3
Q ss_pred eEE-EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh---------hhccchhhh
Q 028647 8 LLK-VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSLGVAF 77 (206)
Q Consensus 8 ~~~-i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~ 77 (206)
.++ |+++|++|+|||||+|+|++..+.....+..+.+.....+.+++ ..+.+|||+|.- .+.. ....
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~-tl~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFV-TLSE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHH-HHHG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHH-HHHH
Confidence 345 99999999999999999998876544455556666677777877 457899999952 1222 2335
Q ss_pred hccCcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc--CCCc
Q 028647 78 YRGADCCVLVYDVNSMK--SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK--GNIP 153 (206)
Q Consensus 78 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~ 153 (206)
+..+|++++|+|++++. ..+....+...+.... ..+.|+++|+||+|+.... .....+.+..+...+ +..+
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~----~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIG----VSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT----CCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHCSCEEE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC----cCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhcCCCCc
Confidence 68899999999999876 4444444443333221 1268999999999987642 111122333333444 2246
Q ss_pred EEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647 154 YFETSAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 154 ~~~~S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
++++|++++.|+++++++|.+.+....
T Consensus 330 ~~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 330 VIPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHHHhcccC
Confidence 899999999999999999998776543
No 145
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=4.7e-22 Score=147.56 Aligned_cols=168 Identities=18% Similarity=0.232 Sum_probs=107.7
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCc-cceeEEEEEEEeCCeEEEEEEEeCCChhhhccc---------
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKAT-IGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------- 73 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------- 73 (206)
....++|+|+|++|+|||||+++|++... .....++ .+...........+ ..+.||||||+..+...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 34579999999999999999999998763 3333443 44444455555666 46899999997654322
Q ss_pred --hhhhhccCcEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCCCCCcEEEEEe-CCCCCCCCcccc----cHHHHHHH
Q 028647 74 --GVAFYRGADCCVLVYDVNSMKSF-DNLNNWREEFLIQASPSDPDNFPFVVLGN-KIDVDGGNSRVV----SEKKARAW 145 (206)
Q Consensus 74 --~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~n-K~Dl~~~~~~~~----~~~~~~~~ 145 (206)
....++.+|++++|+|+++.... ..+..++..+..... ..|+++|+| |+|+........ ..++++.+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~-----~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~ 171 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDA-----MGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKL 171 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGG-----GGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchh-----hccEEEEEEcccccCCccHHHHHHhcchHHHHHH
Confidence 22356789999999999863221 223334433322110 346666666 999975311000 00334445
Q ss_pred HHhcCCCc--E--EEeeccCCCCHHHHHHHHHHHHHhc
Q 028647 146 CASKGNIP--Y--FETSAKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 146 ~~~~~~~~--~--~~~S~~~~~~i~~l~~~l~~~~~~~ 179 (206)
....+... + +++||+++.|++++|+.|.+.+...
T Consensus 172 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 55554211 2 7899999999999999999988764
No 146
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.88 E-value=5.1e-23 Score=153.82 Aligned_cols=165 Identities=15% Similarity=0.182 Sum_probs=94.3
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CC-------CCccceeEEEEEEEeCCeEEEEEEEeCCChhh------
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QY-------KATIGADFLTKEVQFEDRLFTLQIWDTAGQER------ 69 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------ 69 (206)
++...++|+|+|.+|+|||||+|+|+...... .+ .++.+.+.....+..++..+.+.+|||||...
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~ 83 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 83 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT
T ss_pred cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh
Confidence 45567999999999999999999987665443 22 45555555555555566667899999999622
Q ss_pred -hccch-------hhhhc-------------cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 028647 70 -FQSLG-------VAFYR-------------GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (206)
Q Consensus 70 -~~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (206)
+.... ..++. .+|+++++++.+.......-..++..+ .. ++|+++|+||+|
T Consensus 84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l----~~----~~pvi~V~nK~D 155 (274)
T 3t5d_A 84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL----HE----KVNIIPLIAKAD 155 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH----TT----TSCEEEEESSGG
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH----hc----cCCEEEEEeccC
Confidence 22221 22222 378999999776522112222333333 22 679999999999
Q ss_pred CCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 177 (206)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~ 177 (206)
+..........+.+.+.....+ ++++.+|+.+++|+++++++|.+.++
T Consensus 156 ~~~~~e~~~~~~~i~~~l~~~~-i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 156 TLTPEECQQFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTT-CCCCCC-----------CHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHcC-CeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 8754333333344555555555 88999999999999999999987653
No 147
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.88 E-value=8.1e-23 Score=162.06 Aligned_cols=156 Identities=21% Similarity=0.206 Sum_probs=106.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc--------hhh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVA 76 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~ 76 (206)
...++|+++|++|+|||||+|+|++..+. ....++++.+.....+.+++ ..+.+|||||...+... ...
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~ 299 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQ 299 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------C
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhh
Confidence 34689999999999999999999986543 34455666666556666777 46789999997554433 233
Q ss_pred hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFE 156 (206)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
.+..+|++++|+|++++.+... ..++..+ . ..|+++|+||+|+.+..... ....+ ....++++
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~-----~~piivV~NK~Dl~~~~~~~----~~~~~---~~~~~~i~ 362 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGD-QEIYEQV----K-----HRPLILVMNKIDLVEKQLIT----SLEYP---ENITQIVH 362 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHH-HHHHHHH----T-----TSCEEEEEECTTSSCGGGST----TCCCC---TTCCCEEE
T ss_pred hhhcCCEEEEEeccCCCCCHHH-HHHHHhc----c-----CCcEEEEEECCCCCcchhhH----HHHHh---ccCCcEEE
Confidence 5788999999999998766443 3344333 2 46999999999997652211 11111 13468999
Q ss_pred eeccCCCCHHHHHHHHHHHHHhcC
Q 028647 157 TSAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 157 ~S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
+|+++|.|+++++++|.+.+....
T Consensus 363 iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 363 TAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp EBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999886543
No 148
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.88 E-value=2.1e-22 Score=161.33 Aligned_cols=155 Identities=17% Similarity=0.163 Sum_probs=99.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCccceeEEEEEEEeCC
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKF-------------------------------SNQYKATIGADFLTKEVQFED 54 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (206)
+..++|+++|++++|||||+++|+.... .....++.+.+.....+..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-- 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-- 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec--
Confidence 5679999999999999999999975411 0111122333333333333
Q ss_pred eEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHH-----HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDN-----LNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (206)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 129 (206)
....+.||||||+..+...+...+..+|++|+|+|++++.+... .......+..... ..|+++|+||+|+
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~-----~~~iIvviNK~Dl 183 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-----IHNLIIAMNKMDN 183 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT-----CCCEEEEEECGGG
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC-----CCcEEEEEECcCc
Confidence 34678999999999999999999999999999999998643221 1111111221211 2469999999999
Q ss_pred CCCCc--ccccHHHHHHHHHhcC----CCcEEEeeccCCCCHHH
Q 028647 130 DGGNS--RVVSEKKARAWCASKG----NIPYFETSAKEGINVEE 167 (206)
Q Consensus 130 ~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~~ 167 (206)
.+... .....+++..+...++ .++++++||++|+|+++
T Consensus 184 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 184 VDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 86421 1122333444444333 36899999999999874
No 149
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.88 E-value=7.7e-23 Score=160.20 Aligned_cols=164 Identities=17% Similarity=0.137 Sum_probs=112.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCC-------CCC-------CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKK-------FSN-------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS 72 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 72 (206)
+.++|+++|++++|||||+++|++.. +.. ..+...+.+.......+......+.||||||+..|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999998631 110 0001122233233333433345789999999999988
Q ss_pred chhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcc-cccHHHHHHHHHhcC
Q 028647 73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSR-VVSEKKARAWCASKG 150 (206)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~ 150 (206)
.+...+..+|++|+|+|+++....+....+ ..+.. . ++| +++++||+|+.+.... ....+++.+++..++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-~------~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 153 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ-I------GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFG 153 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH-T------TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH-c------CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcC
Confidence 888889999999999999986543333222 22221 1 678 6899999999752111 223456666776665
Q ss_pred ----CCcEEEeeccCCCC----------HHHHHHHHHHHHHh
Q 028647 151 ----NIPYFETSAKEGIN----------VEEAFQCIAKNALK 178 (206)
Q Consensus 151 ----~~~~~~~S~~~~~~----------i~~l~~~l~~~~~~ 178 (206)
.++++++||++|.| ++++++.|.+.+..
T Consensus 154 ~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 154 YKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp SCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred CCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 36899999999764 88899988887653
No 150
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=9.9e-22 Score=155.83 Aligned_cols=162 Identities=23% Similarity=0.188 Sum_probs=107.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccc-----------
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL----------- 73 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------- 73 (206)
...++|+++|++|||||||+|+|++.... ....++++.+.....+.+++. .+.+|||+|.......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 34689999999999999999999987542 334455555565666777775 5789999996432211
Q ss_pred -hhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHH-HHH---Hh
Q 028647 74 -GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKAR-AWC---AS 148 (206)
Q Consensus 74 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-~~~---~~ 148 (206)
....++.+|++++++|+.++.+.... .+...+. . .+.|+++|+||+|+.+.. ....++.. .+. ..
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~-~------~~~~~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~ 325 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLME-R------RGRASVVVFNKWDLVVHR--EKRYDEFTKLFREKLYF 325 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHH-H------TTCEEEEEEECGGGSTTG--GGCHHHHHHHHHHHCGG
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHH-H------cCCCEEEEEECccCCCch--hhHHHHHHHHHHHHhcc
Confidence 13456789999999999876554432 2222221 1 178999999999997642 22222222 222 23
Q ss_pred cCCCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647 149 KGNIPYFETSAKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 149 ~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~ 179 (206)
....+++++||++|.|++++++.+.+.+...
T Consensus 326 ~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 326 IDYSPLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp GTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 3457899999999999999999999877654
No 151
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.88 E-value=6.3e-23 Score=161.16 Aligned_cols=166 Identities=17% Similarity=0.144 Sum_probs=113.1
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcC--------CCCCC-------CCCccceeEEEEEEEeCCeEEEEEEEeCCChh
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNK--------KFSNQ-------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (206)
..+..++|+++|++++|||||+++|++. .+... .+...+.++......+......+.+|||||+.
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 3456799999999999999999999873 11100 00112222222333343333578999999999
Q ss_pred hhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcc-cccHHHHHHHH
Q 028647 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSR-VVSEKKARAWC 146 (206)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~~~~~~~~~~~ 146 (206)
.|...+...+..+|++|+|+|++++...+ ...++..+... ++| +++++||+|+.+.... ....+++.++.
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~~-------~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l 158 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV-------GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT-------TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc-------CCCEEEEEEECccccCcHHHHHHHHHHHHHHH
Confidence 99888888999999999999998865433 33444333221 678 8999999999753111 12334566666
Q ss_pred HhcC----CCcEEEeeccCCCC------------------HHHHHHHHHHHHH
Q 028647 147 ASKG----NIPYFETSAKEGIN------------------VEEAFQCIAKNAL 177 (206)
Q Consensus 147 ~~~~----~~~~~~~S~~~~~~------------------i~~l~~~l~~~~~ 177 (206)
..++ ..+++++||++|.| +++|++.|.+.+.
T Consensus 159 ~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 6655 37899999999987 7777777777664
No 152
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=1.2e-21 Score=144.15 Aligned_cols=166 Identities=15% Similarity=0.190 Sum_probs=106.9
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCc--cceeEEEEEEEeCCeEEEEEEEeCCCh--------hhhccchh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKAT--IGADFLTKEVQFEDRLFTLQIWDTAGQ--------ERFQSLGV 75 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~~ 75 (206)
...++|+|+|.+|+|||||+|+|++........++ ++..........++ ..+.+|||||. +.+.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 56799999999999999999999988765443333 33333444455555 56889999995 33333333
Q ss_pred hhh----ccCcEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccccc----HHHHHHHH
Q 028647 76 AFY----RGADCCVLVYDVNSMKSF-DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVS----EKKARAWC 146 (206)
Q Consensus 76 ~~~----~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~----~~~~~~~~ 146 (206)
..+ +.+|++++|+|+++.... .....++..+... ...+.|+++++||.|+.+....... .+.++.+.
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~----~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~ 172 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE----DVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELV 172 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG----GGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHH
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh----hhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHH
Confidence 333 889999999999853221 1223333333211 1115799999999999764211111 14567777
Q ss_pred HhcCCCcEEEeeccC-----CCCHHHHHHHHHHHHHh
Q 028647 147 ASKGNIPYFETSAKE-----GINVEEAFQCIAKNALK 178 (206)
Q Consensus 147 ~~~~~~~~~~~S~~~-----~~~i~~l~~~l~~~~~~ 178 (206)
..++ ..++.++... +.++++|++.|.+.+.+
T Consensus 173 ~~~g-~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 173 AECG-GRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HHTT-TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcC-CeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 7776 6677666554 57999999999888865
No 153
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=6.5e-21 Score=139.72 Aligned_cols=167 Identities=15% Similarity=0.182 Sum_probs=107.2
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEEEeCCeEEEEEEEeCCCh-----------hhhc
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA--TIGADFLTKEVQFEDRLFTLQIWDTAGQ-----------ERFQ 71 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~-----------~~~~ 71 (206)
....++|+|+|++|+|||||+++|++..+.....+ +.+.........+.+ ..+.+|||||. ..+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence 35679999999999999999999999887655544 445555555666666 46789999993 2344
Q ss_pred cchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc----ccHHHHHHHHH
Q 028647 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV----VSEKKARAWCA 147 (206)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~~~~~~ 147 (206)
......++.+|++++|+|+++....+ ..++..+...+... ...|+++|+||+|+....... ...+.++.+..
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence 44455567789999999987643311 22222222211100 045999999999987643221 11245777777
Q ss_pred hcCCCcEEEeeccCC-----CCHHHHHHHHHHHHHh
Q 028647 148 SKGNIPYFETSAKEG-----INVEEAFQCIAKNALK 178 (206)
Q Consensus 148 ~~~~~~~~~~S~~~~-----~~i~~l~~~l~~~~~~ 178 (206)
.++ ..++.++...+ .++.++++.+.+.+.+
T Consensus 180 ~~~-~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 180 IFG-DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHS-SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcC-CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 777 67888877644 6899999988887754
No 154
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.9e-22 Score=143.02 Aligned_cols=119 Identities=15% Similarity=0.194 Sum_probs=88.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhcc--
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG-- 80 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~-- 80 (206)
.+.++|+|+|++|||||||+++|.+..+.. ...++.+.++ ....+.+||+||+..+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 456899999999999999999999887543 2222222111 23568899999998888777777766
Q ss_pred --CcEEEEEEECC-ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 028647 81 --ADCCVLVYDVN-SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (206)
Q Consensus 81 --~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 133 (206)
+|++++|+|++ +++++.....|+..+..........+.|+++|+||+|+.+..
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 899999888888777654321011278999999999998754
No 155
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.87 E-value=1.2e-23 Score=166.55 Aligned_cols=163 Identities=14% Similarity=0.208 Sum_probs=105.4
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcC--CCCCC-----------------------------CCCccceeEEEEEEEeC
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNK--KFSNQ-----------------------------YKATIGADFLTKEVQFE 53 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 53 (206)
.++.++|+++|++++|||||+++|+.. .+... ..++.+.+.....+...
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 356799999999999999999999864 22111 01223333333333333
Q ss_pred CeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCCC
Q 028647 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNF-PFVVLGNKIDVDGG 132 (206)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~ 132 (206)
+ ..+.+|||||+..|...+...+..+|++|+|+|+++ .+++....|..+...+.......++ |+++++||+|+.+.
T Consensus 83 ~--~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 83 K--YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp S--CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred C--eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence 3 578999999999999999999999999999999998 5566433221111111100000044 68999999999863
Q ss_pred Cc----ccccHHHHHHHHHhcC----CCcEEEeeccCCCCHHHHHH
Q 028647 133 NS----RVVSEKKARAWCASKG----NIPYFETSAKEGINVEEAFQ 170 (206)
Q Consensus 133 ~~----~~~~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~~l~~ 170 (206)
.. .....+++.+++..++ .++++++||++|+|+.++++
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 21 1234566677776655 26799999999999985543
No 156
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.87 E-value=6.4e-22 Score=159.32 Aligned_cols=117 Identities=16% Similarity=0.222 Sum_probs=83.9
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC------------------C----CCCCccceeEEEEEEEeCCeEEEEEEEe
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS------------------N----QYKATIGADFLTKEVQFEDRLFTLQIWD 63 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D 63 (206)
.+..+|+|+|++|+|||||+++|+..... . ...++.+.......+.+.+ ..+.|||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 45789999999999999999999621100 0 0011222222333444444 6789999
Q ss_pred CCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
|||+..+...+...++.+|++|+|+|++++.+.....-|. .+... ++|+++|+||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~~-------~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRLR-------HTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHTT-------TCCEEEEEECTTSCCS
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHHc-------CCCEEEEEeCCCCccc
Confidence 9999999999999999999999999999876655554442 22211 7899999999999764
No 157
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=2.5e-22 Score=159.94 Aligned_cols=156 Identities=17% Similarity=0.186 Sum_probs=101.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCC--------hhhhccchhhhhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG--------QERFQSLGVAFYR 79 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~~~~ 79 (206)
..+|+++|.+|||||||+|+|.+..+.. ...+.+.+..............+.+||||| +..+......+++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 5789999999999999999999876541 122223333333333443345789999999 6777778888899
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeec
Q 028647 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSA 159 (206)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 159 (206)
.+|++|+|+|..+..+.. ..++..++.. .++|+++|+||+|+.... +...++. .++....+++||
T Consensus 102 ~ad~il~VvD~~~~~~~~--d~~l~~~l~~------~~~pvilV~NK~D~~~~~------~~~~e~~-~lg~~~~~~iSA 166 (456)
T 4dcu_A 102 EADVIIFMVNGREGVTAA--DEEVAKILYR------TKKPVVLAVNKLDNTEMR------ANIYDFY-SLGFGEPYPISG 166 (456)
T ss_dssp HCSEEEEEEESSSCSCHH--HHHHHHHHTT------CCSCEEEEEECC---------------CCSG-GGSSSSEEECCT
T ss_pred hCCEEEEEEeCCCCCChH--HHHHHHHHHH------cCCCEEEEEECccchhhh------hhHHHHH-HcCCCceEEeec
Confidence 999999999988644322 2333333322 178999999999986431 1111111 233346789999
Q ss_pred cCCCCHHHHHHHHHHHHHhc
Q 028647 160 KEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 160 ~~~~~i~~l~~~l~~~~~~~ 179 (206)
.+|.|+.++++.+.+.+...
T Consensus 167 ~~g~gv~~L~~~i~~~l~~~ 186 (456)
T 4dcu_A 167 THGLGLGDLLDAVAEHFKNI 186 (456)
T ss_dssp TTCTTHHHHHHHHHTTGGGS
T ss_pred ccccchHHHHHHHHhhcccc
Confidence 99999999999999877543
No 158
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.86 E-value=1.1e-21 Score=151.91 Aligned_cols=150 Identities=15% Similarity=0.034 Sum_probs=107.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEE
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (206)
+|+++|++++|||||+++|+ ....+.+.....+...+ ..+.+|||||+..|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 22222233333333444 468999999999998888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEe-CCCCCCCCcccccHHHHHHHHHhcC--CCcEEE--eeccC--
Q 028647 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPF-VVLGN-KIDVDGGNSRVVSEKKARAWCASKG--NIPYFE--TSAKE-- 161 (206)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~S~~~-- 161 (206)
+.. .......++..+... ++|. ++++| |+|+ +........++++++....+ .+++++ +||++
T Consensus 93 -~~g-~~~qt~e~~~~~~~~-------~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~ 162 (370)
T 2elf_A 93 -PQG-LDAHTGECIIALDLL-------GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKN 162 (370)
T ss_dssp -TTC-CCHHHHHHHHHHHHT-------TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSS
T ss_pred -CCC-CcHHHHHHHHHHHHc-------CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCc
Confidence 543 233334444333221 6677 99999 9999 43111222355666655443 478999 99999
Q ss_pred -CCCHHHHHHHHHHHHHhc
Q 028647 162 -GINVEEAFQCIAKNALKS 179 (206)
Q Consensus 162 -~~~i~~l~~~l~~~~~~~ 179 (206)
+.|++++++.|.+.+...
T Consensus 163 ~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 163 PFEGVDELKARINEVAEKI 181 (370)
T ss_dssp TTTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhcccc
Confidence 999999999999887653
No 159
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.86 E-value=5.7e-24 Score=169.41 Aligned_cols=157 Identities=23% Similarity=0.277 Sum_probs=107.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 85 (206)
.++.+|+++|++++|||||+++|....+.....++.+.+.....+.+++ ..+.||||||++.|...+...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 3568999999999999999999987654433333333333223333344 35789999999999999888899999999
Q ss_pred EEEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHH--HHHHHHHhcC-CCcEEEeec
Q 028647 86 LVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEK--KARAWCASKG-NIPYFETSA 159 (206)
Q Consensus 86 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~S~ 159 (206)
+|+|++++ .+.+.+ ..... . ++|+++++||+|+.+........+ +...+...++ .++++++||
T Consensus 80 LVVda~~g~~~qT~e~l----~~~~~--~-----~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSA 148 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI----QHAKA--A-----QVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSA 148 (501)
T ss_dssp EEEETTTBSCTTTHHHH----HHHHH--T-----TCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCT
T ss_pred EEeecccCccHHHHHHH----HHHHh--c-----CceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEee
Confidence 99999873 333322 11111 1 789999999999976422111000 0000111121 368999999
Q ss_pred cCCCCHHHHHHHHHHH
Q 028647 160 KEGINVEEAFQCIAKN 175 (206)
Q Consensus 160 ~~~~~i~~l~~~l~~~ 175 (206)
++|.|+++++++|...
T Consensus 149 ktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 149 KAGTGIDELLDAILLQ 164 (501)
T ss_dssp TTCTTCTTHHHHTTTT
T ss_pred eeccCcchhhhhhhhh
Confidence 9999999999998754
No 160
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.86 E-value=4.8e-22 Score=158.14 Aligned_cols=156 Identities=17% Similarity=0.236 Sum_probs=105.2
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCC--CCCC-----------------------------CCCccceeEEEEEEEe
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK--FSNQ-----------------------------YKATIGADFLTKEVQF 52 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~ 52 (206)
+....++|+++|++++|||||+++|+... +... ...+.+.+.....+..
T Consensus 3 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~ 82 (458)
T 1f60_A 3 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (458)
T ss_dssp CCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC
T ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec
Confidence 45678999999999999999999998641 1100 0122233332333333
Q ss_pred CCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhh---HH---HHHHHHHHHHhhcCCCCCCCCc-EEEEEe
Q 028647 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS---FD---NLNNWREEFLIQASPSDPDNFP-FVVLGN 125 (206)
Q Consensus 53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~p-~ivv~n 125 (206)
.+ ..+.||||||+..|...+...+..+|++|+|+|++++.. |+ .....+... .. . ++| +++|+|
T Consensus 83 ~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~-~-----~v~~iivviN 153 (458)
T 1f60_A 83 PK--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT-L-----GVRQLIVAVN 153 (458)
T ss_dssp SS--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH-T-----TCCEEEEEEE
T ss_pred CC--ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH-c-----CCCeEEEEEE
Confidence 33 578999999999999999999999999999999997532 11 111222111 11 1 565 999999
Q ss_pred CCCCCCCCc--ccccHHHHHHHHHhcCC----CcEEEeeccCCCCHHHH
Q 028647 126 KIDVDGGNS--RVVSEKKARAWCASKGN----IPYFETSAKEGINVEEA 168 (206)
Q Consensus 126 K~Dl~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~S~~~~~~i~~l 168 (206)
|+|+.+... .....+++.+++..++. ++++++||++|.|+.++
T Consensus 154 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 154 KMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 999984211 12344556666666652 78999999999998754
No 161
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.86 E-value=3.8e-21 Score=147.61 Aligned_cols=128 Identities=15% Similarity=0.213 Sum_probs=99.9
Q ss_pred EEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhcCCCCCCC
Q 028647 48 KEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----------MKSFDNLNNWREEFLIQASPSDPDN 117 (206)
Q Consensus 48 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~ 117 (206)
..+.+++ +.+++||++|++.+...|..++++++++|+|+|+++ ..+++....|+..+..... ..+
T Consensus 186 ~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~---~~~ 260 (353)
T 1cip_A 186 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW---FTD 260 (353)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG---GTT
T ss_pred EEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc---ccC
Confidence 3444554 779999999999999999999999999999999998 4568888788777765321 227
Q ss_pred CcEEEEEeCCCCCCCC-------------cccccHHHHHHHHHh----------cCCCcEEEeeccCCCCHHHHHHHHHH
Q 028647 118 FPFVVLGNKIDVDGGN-------------SRVVSEKKARAWCAS----------KGNIPYFETSAKEGINVEEAFQCIAK 174 (206)
Q Consensus 118 ~p~ivv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~----------~~~~~~~~~S~~~~~~i~~l~~~l~~ 174 (206)
+|+++++||+|+.+.. ......+++..++.. ...+.+++|||+++.|++++|+++.+
T Consensus 261 ~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~ 340 (353)
T 1cip_A 261 TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD 340 (353)
T ss_dssp SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence 8999999999985321 002456777777652 23478999999999999999999999
Q ss_pred HHHhcC
Q 028647 175 NALKSG 180 (206)
Q Consensus 175 ~~~~~~ 180 (206)
.+++..
T Consensus 341 ~i~~~~ 346 (353)
T 1cip_A 341 VIIKNN 346 (353)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 987654
No 162
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=4e-21 Score=152.08 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=103.7
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CC----------CCC---------------------ccceeEEEEEEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS--NQ----------YKA---------------------TIGADFLTKEVQ 51 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~--~~----------~~~---------------------~~~~~~~~~~~~ 51 (206)
.+..++|+++|++++|||||+++|+..... .. ... +.+.+.....+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 356799999999999999999999865311 00 001 111111122222
Q ss_pred eCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCC
Q 028647 52 FEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNF-PFVVLGNKIDVD 130 (206)
Q Consensus 52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~ 130 (206)
..+ ..+.+|||||++.|...+...+..+|++|+|+|++++...+ ...++..+. .. +. |+++|+||+|+.
T Consensus 101 ~~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~-~~------~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 101 TAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIAS-LL------GIKHIVVAINKMDLN 170 (434)
T ss_dssp CSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHH-HT------TCCEEEEEEECTTTT
T ss_pred cCC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHH-Hc------CCCeEEEEEEcCcCC
Confidence 333 57899999999999888888999999999999999864322 223332222 11 44 699999999998
Q ss_pred CCCcc--cccHHHHHHHHHhcC----CCcEEEeeccCCCCHHHH
Q 028647 131 GGNSR--VVSEKKARAWCASKG----NIPYFETSAKEGINVEEA 168 (206)
Q Consensus 131 ~~~~~--~~~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~~l 168 (206)
+.... ....++..+++..++ .++++++||++|.|++++
T Consensus 171 ~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 171 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 63211 123455666666654 268999999999999884
No 163
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=9.8e-22 Score=160.84 Aligned_cols=154 Identities=18% Similarity=0.192 Sum_probs=103.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------------------------CCccceeEEEEEEEeCC
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-------------------------------KATIGADFLTKEVQFED 54 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 54 (206)
+..++|+++|++|+|||||+++|+........ .++.+.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 55799999999999999999999865322111 12333333333444444
Q ss_pred eEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhh---H---HHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCC
Q 028647 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS---F---DNLNNWREEFLIQASPSDPDNF-PFVVLGNKI 127 (206)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~ 127 (206)
..+.||||||+..+...+...+..+|++|+|+|++++.. + ......+. +.... ++ |+++|+||+
T Consensus 245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~-~~~~l------gi~~iIVVvNKi 315 (611)
T 3izq_1 245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASSL------GIHNLIIAMNKM 315 (611)
T ss_dssp --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHH-HHHTT------TCCEEEEEEECT
T ss_pred --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHH-HHHHc------CCCeEEEEEecc
Confidence 578999999999999999999999999999999987421 0 01111111 11111 43 599999999
Q ss_pred CCCCCCc--ccccHHHHHHHHHhcC----CCcEEEeeccCCCCHHHH
Q 028647 128 DVDGGNS--RVVSEKKARAWCASKG----NIPYFETSAKEGINVEEA 168 (206)
Q Consensus 128 Dl~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~S~~~~~~i~~l 168 (206)
|+.+... .....+++..+....+ .++++++||++|.|+.++
T Consensus 316 Dl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 316 DNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred cccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 9986321 1122344444554443 368999999999999876
No 164
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=5.5e-22 Score=153.31 Aligned_cols=172 Identities=16% Similarity=0.214 Sum_probs=93.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCC--------CCccceeEEEEEEEeCCeEEEEEEEeCCCh-------hh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------ER 69 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~ 69 (206)
...++|+|+|++|+|||||+++|+..... ..+ .++.+.......+...+..+.+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 45689999999999999999998764332 221 133333333333444566678999999997 55
Q ss_pred hccchh-------hhhccC-------------cEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 028647 70 FQSLGV-------AFYRGA-------------DCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKID 128 (206)
Q Consensus 70 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (206)
+..... .+++.+ |+++++++.. ..++.... .++.. +. .++|+|+|+||+|
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~----l~----~~~piIlV~NK~D 185 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKA----IH----NKVNIVPVIAKAD 185 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHH----TC----S-SCEEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHH----hc----cCCCEEEEEECCC
Confidence 555554 444433 4566666542 22333332 23222 22 2789999999999
Q ss_pred CCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCccccccCC
Q 028647 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLP 188 (206)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~ 188 (206)
+..........+++.+++...+ ++++++|++++.+ ++.|..+.+.+....|.......
T Consensus 186 l~~~~ev~~~k~~i~~~~~~~~-i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~~vv~s~ 243 (361)
T 2qag_A 186 TLTLKERERLKKRILDEIEEHN-IKIYHLPDAESDE-DEDFKEQTRLLKASIPFSVVGSN 243 (361)
T ss_dssp SSCHHHHHHHHHHHHHHTTCC--CCSCCCC----------CHHHHHHHHHTCSCEECCCS
T ss_pred CCCHHHHHHHHHHHHHHHHHCC-CCEEeCCCcCCCc-chhHHHHHHHHHhcCCCCEeCCC
Confidence 9864222222256666666665 8999999999999 88999999988877765544433
No 165
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.85 E-value=3.4e-21 Score=138.37 Aligned_cols=160 Identities=19% Similarity=0.160 Sum_probs=101.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh----------hccchh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSLGV 75 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~ 75 (206)
....+|+++|++|||||||+++|.+..+.....++.+.......+.+++ .+.+||+||... +.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 4467999999999999999999998764333344444443333333333 467899999632 222222
Q ss_pred hhh---ccCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcC
Q 028647 76 AFY---RGADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG 150 (206)
Q Consensus 76 ~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (206)
.++ ..++++++++|++++.+... +..|+... +.|+++|.||+|+.....++...+.+..++...+
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~----------~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~ 170 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS----------NIAVLVLLTKADKLASGARKAQLNMVREAVLAFN 170 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHc----------CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcC
Confidence 333 46899999999988655332 22232211 7899999999998764323333455666665554
Q ss_pred -CCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647 151 -NIPYFETSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 151 -~~~~~~~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
...++++|+.++.|+++++++|.+.+.+
T Consensus 171 ~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 171 GDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp SCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 3568899999999999999999887643
No 166
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.85 E-value=4.1e-21 Score=156.39 Aligned_cols=163 Identities=25% Similarity=0.270 Sum_probs=106.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CccceeEEEEEE------------EeCCeEEEEEEEeCCChhh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK----ATIGADFLTKEV------------QFEDRLFTLQIWDTAGQER 69 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~~i~D~~g~~~ 69 (206)
.+.++|+++|++++|||||+++|.+..+..... ++.+..+..... .++.....+.||||||+..
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 346899999999999999999998765432211 122222211000 0000112489999999999
Q ss_pred hccchhhhhccCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc-----------
Q 028647 70 FQSLGVAFYRGADCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR----------- 135 (206)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----------- 135 (206)
|.......++.+|++|+|+|+++ +.+++.+.. +.. .++|+++++||+|+.+....
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~-------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa 151 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM-------YRTPFVVAANKIDRIHGWRVHEGRPFMETFS 151 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH-------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHT
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH-------cCCeEEEEecccccccccccccCCchHHHHH
Confidence 99888888899999999999998 555444322 111 17899999999999753110
Q ss_pred ---ccc----HH---HHHHHHHhc--------------CCCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647 136 ---VVS----EK---KARAWCASK--------------GNIPYFETSAKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 136 ---~~~----~~---~~~~~~~~~--------------~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~ 179 (206)
... .+ +........ ..++++++||++|.|+++++++|...+...
T Consensus 152 ~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 152 KQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 000 01 111111111 224899999999999999999999887643
No 167
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.85 E-value=5.8e-21 Score=144.65 Aligned_cols=131 Identities=12% Similarity=0.129 Sum_probs=99.2
Q ss_pred EEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhcCCCCC
Q 028647 46 LTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------SMKSFDNLNNWREEFLIQASPSDP 115 (206)
Q Consensus 46 ~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~ 115 (206)
....+.+.+ +.+++||++|++.++..|.+++++++++|+|+|++ +..+++....|+..+.... ..
T Consensus 158 ~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~---~~ 232 (327)
T 3ohm_A 158 IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP---WF 232 (327)
T ss_dssp EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG---GG
T ss_pred EEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh---cc
Confidence 334444554 78999999999999999999999999999999665 5667777777777665432 22
Q ss_pred CCCcEEEEEeCCCCCCCC--------------cccccHHHHHHHHH---------hcCCCcEEEeeccCCCCHHHHHHHH
Q 028647 116 DNFPFVVLGNKIDVDGGN--------------SRVVSEKKARAWCA---------SKGNIPYFETSAKEGINVEEAFQCI 172 (206)
Q Consensus 116 ~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~---------~~~~~~~~~~S~~~~~~i~~l~~~l 172 (206)
.++|+++++||+|+.+.. ......+++.+++. ....+.++++||+++.|++.+|+.+
T Consensus 233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v 312 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAV 312 (327)
T ss_dssp TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHH
Confidence 378999999999986421 01346667776642 1123678999999999999999999
Q ss_pred HHHHHhcCc
Q 028647 173 AKNALKSGE 181 (206)
Q Consensus 173 ~~~~~~~~~ 181 (206)
.+.+++..-
T Consensus 313 ~~~Il~~~l 321 (327)
T 3ohm_A 313 KDTILQLNL 321 (327)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhH
Confidence 999987653
No 168
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.85 E-value=2.2e-21 Score=165.15 Aligned_cols=166 Identities=16% Similarity=0.114 Sum_probs=111.5
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCC-------CC-----C--CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK-------FS-----N--QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~-------~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (206)
...+.++|+++|++++|||||+++|++.. +. + ..+...+.++....+.++.....+.||||||+..
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 34567999999999999999999998631 00 0 1112223333222333444446789999999999
Q ss_pred hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCcc-cccHHHHHHHHH
Q 028647 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGNSR-VVSEKKARAWCA 147 (206)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~ 147 (206)
|...+...+..+|++|+|+|++++...+. ..++..+... ++| +++++||+|+.+.... ....+++.++..
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l-------gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk 443 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV-------GVPYIIVFLNKCDMVDDEELLELVEMEVRELLS 443 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH-------TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc-------CCCeEEEEEeecccccchhhHHHHHHHHHHHHH
Confidence 99888889999999999999998643222 2333333221 678 7899999999863111 123456666776
Q ss_pred hcC----CCcEEEeeccCC--------CCHHHHHHHHHHHHH
Q 028647 148 SKG----NIPYFETSAKEG--------INVEEAFQCIAKNAL 177 (206)
Q Consensus 148 ~~~----~~~~~~~S~~~~--------~~i~~l~~~l~~~~~ 177 (206)
.++ .++++++||++| .|++++++.|.+.+.
T Consensus 444 ~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 444 QYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred hccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 654 378999999999 468888888887664
No 169
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.85 E-value=5e-22 Score=158.39 Aligned_cols=158 Identities=18% Similarity=0.222 Sum_probs=91.9
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC--CCCC-----------------------------CCCCccceeEEEEEEEeCC
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNK--KFSN-----------------------------QYKATIGADFLTKEVQFED 54 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 54 (206)
+..++|+++|++++|||||+++|+.. .+.. ......+.+.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 56799999999999999999999742 1110 0012222233223344444
Q ss_pred eEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChh---hHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCC
Q 028647 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK---SFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVD 130 (206)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~ 130 (206)
..+.||||||+..|...+...+..+|++|+|+|++++. +|+...++...+...... ++| +++++||+|+.
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~----~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ----GINHLVVVINKMDEP 194 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT----TCSSEEEEEECTTST
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc----CCCEEEEEEECccCC
Confidence 57899999999999999999999999999999999863 222111222221111111 677 99999999996
Q ss_pred CCCc----ccccHHHHHHHHHhc-C-----CCcEEEeeccCCCCHHHHH
Q 028647 131 GGNS----RVVSEKKARAWCASK-G-----NIPYFETSAKEGINVEEAF 169 (206)
Q Consensus 131 ~~~~----~~~~~~~~~~~~~~~-~-----~~~~~~~S~~~~~~i~~l~ 169 (206)
+... .....+++..++... + .++++++||++|.|+.+++
T Consensus 195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 5321 122344566666554 3 3679999999999998765
No 170
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.84 E-value=8.5e-21 Score=145.64 Aligned_cols=122 Identities=12% Similarity=0.174 Sum_probs=92.7
Q ss_pred eEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEE
Q 028647 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124 (206)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 124 (206)
..+.+++||++|++.+...+..++++++++|+|+|++ +..+++....|+..+..... ..++|+++|+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~---~~~~piiLvg 257 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC---FEKTSFMLFL 257 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGG---GSSCEEEEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccc---cCCCeEEEEE
Confidence 5688999999999999999999999999999999998 77888888888887765321 1278999999
Q ss_pred eCCCCCCCCc-------------------ccccHHHHHHHHHh---------------cCCCcEEEeeccCCCCHHHHHH
Q 028647 125 NKIDVDGGNS-------------------RVVSEKKARAWCAS---------------KGNIPYFETSAKEGINVEEAFQ 170 (206)
Q Consensus 125 nK~Dl~~~~~-------------------~~~~~~~~~~~~~~---------------~~~~~~~~~S~~~~~~i~~l~~ 170 (206)
||+|+.+... .....+++.+++.. ...+.+++|||+++.|++++|+
T Consensus 258 NK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~ 337 (354)
T 2xtz_A 258 NKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFK 337 (354)
T ss_dssp ECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHH
Confidence 9999853210 00124556665332 1124468999999999999999
Q ss_pred HHHHHHHhc
Q 028647 171 CIAKNALKS 179 (206)
Q Consensus 171 ~l~~~~~~~ 179 (206)
++.+.+++.
T Consensus 338 ~v~~~I~~~ 346 (354)
T 2xtz_A 338 LVDETLRRR 346 (354)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 171
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.84 E-value=3.7e-22 Score=162.94 Aligned_cols=163 Identities=17% Similarity=0.203 Sum_probs=89.9
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCccceeEEEEEEEeC
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF-------------------------------SNQYKATIGADFLTKEVQFE 53 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 53 (206)
.+..++|+++|++++|||||+++|+.... .....++++.+.....+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 45679999999999999999999964210 01112233333333333333
Q ss_pred CeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChh---hH---HHHHHHHHHHHhhcCCCCCCCCc-EEEEEeC
Q 028647 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK---SF---DNLNNWREEFLIQASPSDPDNFP-FVVLGNK 126 (206)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK 126 (206)
...+.||||||+..|...+...+..+|++|+|+|++++. .+ ......+..+ ... ++| +|+|+||
T Consensus 254 --~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~-~~l------gip~iIvviNK 324 (592)
T 3mca_A 254 --KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLL-RAL------GISEIVVSVNK 324 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHH-HHS------SCCCEEEEEEC
T ss_pred --CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHH-HHc------CCCeEEEEEec
Confidence 367899999999999999999999999999999998532 01 0111111111 111 566 9999999
Q ss_pred CCCCCCCc--ccccHHHHHHHH-HhcC----CCcEEEeeccCCCCHH--------------HHHHHHHHHH
Q 028647 127 IDVDGGNS--RVVSEKKARAWC-ASKG----NIPYFETSAKEGINVE--------------EAFQCIAKNA 176 (206)
Q Consensus 127 ~Dl~~~~~--~~~~~~~~~~~~-~~~~----~~~~~~~S~~~~~~i~--------------~l~~~l~~~~ 176 (206)
+|+.+... .....+++..+. ...+ .++++++||++|.|+. .|++.|.+..
T Consensus 325 iDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 325 LDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred cccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 99976321 112234444444 3333 2479999999999998 6777766543
No 172
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.83 E-value=3.3e-20 Score=142.90 Aligned_cols=127 Identities=11% Similarity=0.139 Sum_probs=91.3
Q ss_pred EEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhcCCCCCCCC
Q 028647 49 EVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----------MKSFDNLNNWREEFLIQASPSDPDNF 118 (206)
Q Consensus 49 ~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~ 118 (206)
.+.+++ +.+++||++|+..+...|..++++++++|+|+|+++ ..+++....|+..+..... ..++
T Consensus 195 ~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~---~~~~ 269 (362)
T 1zcb_A 195 DFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV---FSNV 269 (362)
T ss_dssp EEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG---GTTS
T ss_pred EeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh---hCCC
Confidence 344444 678999999999999999999999999999999998 6788888888877765321 1278
Q ss_pred cEEEEEeCCCCCCCC--------------cccccHHHHHHHHH-------h---cCCCcEEEeeccCCCCHHHHHHHHHH
Q 028647 119 PFVVLGNKIDVDGGN--------------SRVVSEKKARAWCA-------S---KGNIPYFETSAKEGINVEEAFQCIAK 174 (206)
Q Consensus 119 p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-------~---~~~~~~~~~S~~~~~~i~~l~~~l~~ 174 (206)
|+|+++||+|+.+.. ......+++..++. . ...+.+++|||+++.|++++|+++.+
T Consensus 270 piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~ 349 (362)
T 1zcb_A 270 SIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD 349 (362)
T ss_dssp EEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence 999999999986321 01145666666651 1 12377899999999999999999999
Q ss_pred HHHhcC
Q 028647 175 NALKSG 180 (206)
Q Consensus 175 ~~~~~~ 180 (206)
.+++..
T Consensus 350 ~i~~~~ 355 (362)
T 1zcb_A 350 TILHDN 355 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 173
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.82 E-value=1e-20 Score=143.00 Aligned_cols=161 Identities=16% Similarity=0.204 Sum_probs=100.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC------CCc----------------------ccee-------------
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY------KAT----------------------IGAD------------- 44 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~------~~~----------------------~~~~------------- 44 (206)
...++|+|+|.+|+|||||+|+|++..+.+.. .++ ++.+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45679999999999999999999988764221 121 0000
Q ss_pred ----------EEEEEEEeCCeEEEEEEEeCCChh-------------hhccchhhhhccCcEEE-EEEECCChhhHHHHH
Q 028647 45 ----------FLTKEVQFEDRLFTLQIWDTAGQE-------------RFQSLGVAFYRGADCCV-LVYDVNSMKSFDNLN 100 (206)
Q Consensus 45 ----------~~~~~~~~~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 100 (206)
.....+... ....+.+|||||.. .+......+++.++.++ +|+|+++..+.....
T Consensus 104 ~g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred cccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 000000000 02468999999953 34455667788888766 799998754433333
Q ss_pred HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc--CCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647 101 NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~l~~~l~~~~ 176 (206)
.++..+. . .+.|+++|+||+|+.+... ...+.++...... +..+++++||++|.|+++++++|.+..
T Consensus 183 ~~~~~~~----~---~~~~~i~V~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 183 KIAKEVD----P---QGQRTIGVITKLDLMDEGT--DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHHHC----T---TCSSEEEEEECGGGSCTTC--CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHHhC----C---CCCeEEEEEEccccCCCCc--hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 3443332 1 2789999999999986522 1222222110011 224688999999999999999998743
No 174
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.81 E-value=6.6e-19 Score=146.24 Aligned_cols=120 Identities=19% Similarity=0.236 Sum_probs=84.7
Q ss_pred cccceeEEEEEEcCCCCCHHHHHHHHhcCC--CC------C----------CCCCccceeEEEEEEEeCCeEEEEEEEeC
Q 028647 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKK--FS------N----------QYKATIGADFLTKEVQFEDRLFTLQIWDT 64 (206)
Q Consensus 3 ~~~~~~~~i~viG~~~~GKStli~~l~~~~--~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 64 (206)
....+..+|+|+|++|+|||||+++|+... +. . ......+.......+.+.+ ..+.+|||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDT 84 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDT 84 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECC
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEEC
Confidence 345678999999999999999999998421 10 0 0011222222223333444 67899999
Q ss_pred CChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
||+..+...+..+++.+|++|+|+|+++..+......|.. +... ++|+++|+||+|+...
T Consensus 85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~-------~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY-------KVPRIAFANKMDKTGA 144 (691)
T ss_dssp CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT-------TCCEEEEEECTTSTTC
T ss_pred cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc-------CCCEEEEEECCCcccC
Confidence 9999998899999999999999999998777666554443 2221 7899999999999764
No 175
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.80 E-value=1e-18 Score=136.60 Aligned_cols=164 Identities=16% Similarity=0.105 Sum_probs=110.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh----hccchhh---hhccC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVA---FYRGA 81 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~ 81 (206)
..|+++|++|||||||++.|++........+.++.......+.+++ ...+.++|+||..+ ....... .+..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 3589999999999999999987653322233333334344454544 23578999999632 2112222 24569
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccC
Q 028647 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKE 161 (206)
Q Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 161 (206)
+.+++++|++ ...+..+..+..++....... ...|.++|+||+|+... ...+.+.+.....+ .+++.+||.+
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL--~~~P~ILVlNKlDl~~~----~~~~~l~~~l~~~g-~~vi~iSA~~ 308 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPAL--LRRPSLVALNKVDLLEE----EAVKALADALAREG-LAVLPVSALT 308 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHH--HHSCEEEEEECCTTSCH----HHHHHHHHHHHTTT-SCEEECCTTT
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHh--hcCCEEEEEECCChhhH----HHHHHHHHHHHhcC-CeEEEEECCC
Confidence 9999999997 455566666655554432100 05699999999998752 23344444544444 7899999999
Q ss_pred CCCHHHHHHHHHHHHHhcCc
Q 028647 162 GINVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 162 ~~~i~~l~~~l~~~~~~~~~ 181 (206)
++|+++++++|.+.+.+...
T Consensus 309 g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 309 GAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp CTTHHHHHHHHHHHHHTSCC
T ss_pred ccCHHHHHHHHHHHHHhccc
Confidence 99999999999999977654
No 176
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.80 E-value=2.2e-18 Score=127.89 Aligned_cols=123 Identities=15% Similarity=0.100 Sum_probs=83.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhc-----
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR----- 79 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~----- 79 (206)
.+.++|+++|.+|+|||||+++|++..+. ....+..+.......+..++ ..+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 35799999999999999999999987753 22233334444455556666 47899999998776655444443
Q ss_pred ----cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 80 ----GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 80 ----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
.+|++++|++++..........|+..+....... ...|+++|+||+|+...
T Consensus 112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKE--IWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECTTCCCS
T ss_pred HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchh--hhcCEEEEEeCcccCCC
Confidence 7899999999876442222235555555443320 02489999999999643
No 177
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.80 E-value=1.8e-18 Score=143.73 Aligned_cols=167 Identities=14% Similarity=0.194 Sum_probs=107.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEE-------EEEEe-------------------------
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLT-------KEVQF------------------------- 52 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~-------~~~~~------------------------- 52 (206)
...++|+|+|.+|+|||||+|+|++..+.+ ...+++...... .+..+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 457999999999999999999999877543 233333100000 01111
Q ss_pred ---------------------CCeE--EEEEEEeCCChhh---hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHH
Q 028647 53 ---------------------EDRL--FTLQIWDTAGQER---FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEF 106 (206)
Q Consensus 53 ---------------------~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 106 (206)
.... ..+.||||||... ....+..+++.+|++++|+|++++.+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 0000 2478999999654 3345667889999999999999887766554443322
Q ss_pred HhhcCCCCCCCCcEEEEEeCCCCCCCCcc-cc-------cHHHHHH----HHHhc--------CCCcEEEeecc------
Q 028647 107 LIQASPSDPDNFPFVVLGNKIDVDGGNSR-VV-------SEKKARA----WCASK--------GNIPYFETSAK------ 160 (206)
Q Consensus 107 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~-------~~~~~~~----~~~~~--------~~~~~~~~S~~------ 160 (206)
... +.|+++|+||+|+...... .. ..+.+.. ....+ ...+++++||+
T Consensus 227 ----~~~---~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~ 299 (695)
T 2j69_A 227 ----KGR---GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRR 299 (695)
T ss_dssp ----TTS---CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHH
T ss_pred ----Hhh---CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhh
Confidence 111 6789999999998653200 00 0011211 11111 12479999999
Q ss_pred --------CCCCHHHHHHHHHHHHHhc
Q 028647 161 --------EGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 161 --------~~~~i~~l~~~l~~~~~~~ 179 (206)
++.|++++++.|.+.+...
T Consensus 300 ~~~~~~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 300 LKNPQADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp HHCTTCCCTTSSHHHHHHHHHHHHHHT
T ss_pred ccCchhhhhccCHHHHHHHHHHHHHHh
Confidence 9999999999999877543
No 178
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.79 E-value=4.4e-19 Score=134.84 Aligned_cols=120 Identities=14% Similarity=0.174 Sum_probs=93.4
Q ss_pred EEEEEEEeCCChhhhccchhhhhccCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe
Q 028647 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGN 125 (206)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 125 (206)
.+.+++||++|++.++..|..++++++++|+|+|++ +..++.....|+..+..... ..++|+++++|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~---~~~~piiLv~N 236 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF---LKGAVKLIFLN 236 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG---GTTSEEEEEEE
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc---cCCCeEEEEEE
Confidence 367899999999999999999999999999999998 67788888888777765422 22789999999
Q ss_pred CCCCCCCCc-------------ccccHHHHHHHH-Hhc-------------------------CCCcEEEeeccCCCCHH
Q 028647 126 KIDVDGGNS-------------RVVSEKKARAWC-ASK-------------------------GNIPYFETSAKEGINVE 166 (206)
Q Consensus 126 K~Dl~~~~~-------------~~~~~~~~~~~~-~~~-------------------------~~~~~~~~S~~~~~~i~ 166 (206)
|+|+....- .....+++.+++ ..+ ..+.++++||+++.|++
T Consensus 237 K~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~ 316 (340)
T 4fid_A 237 KMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIK 316 (340)
T ss_dssp CHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHH
T ss_pred CchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHH
Confidence 999854210 011344444433 223 23678999999999999
Q ss_pred HHHHHHHHHHHh
Q 028647 167 EAFQCIAKNALK 178 (206)
Q Consensus 167 ~l~~~l~~~~~~ 178 (206)
.+|+.+.+.+++
T Consensus 317 ~vF~~v~~~Il~ 328 (340)
T 4fid_A 317 RVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999987
No 179
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.79 E-value=9.9e-19 Score=140.95 Aligned_cols=117 Identities=19% Similarity=0.270 Sum_probs=79.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC--------------------CCCccceeE--EEEEEEeCCeEEEEEEEe
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ--------------------YKATIGADF--LTKEVQFEDRLFTLQIWD 63 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~--------------------~~~~~~~~~--~~~~~~~~~~~~~~~i~D 63 (206)
.+.++|+++|++|+|||||+++|+....... .+...+.++ ....+.+.+ ..+.+||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 4579999999999999999999986321100 001111111 122233344 6789999
Q ss_pred CCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
|||+..+......+++.+|++|+|+|++++..... ..+ +..+... ++|+++++||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~----~~~~~~~---~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKL----MEVTRLR---DTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHH----HHHHTTT---TCCEEEEEECTTSCCS
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHH----HHHHHHc---CCCEEEEEcCcCCccc
Confidence 99999998888889999999999999987643222 222 2222221 7899999999999764
No 180
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.78 E-value=1.5e-19 Score=136.48 Aligned_cols=167 Identities=17% Similarity=0.240 Sum_probs=88.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC-CCCCCCC--------CccceeEEEEEEEeCCeEEEEEEEeCCCh-------hh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNK-KFSNQYK--------ATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------ER 69 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~ 69 (206)
...++|+|+|++|+|||||+++|++. .++.... ++.............+....+++||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45689999999999999999998865 3332221 11111111122222344467899999997 44
Q ss_pred hccchh-------hhhcc-------------CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647 70 FQSLGV-------AFYRG-------------ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (206)
Q Consensus 70 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 129 (206)
+..... .+++. +++++++.+.+.. +++.... .++..+.. +.|+++|+||+|+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~---~~l~~l~~----~~~iilV~~K~Dl 167 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV---AFMKAIHN----KVNIVPVIAKADT 167 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH---HHHHHHTT----TSCEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH---HHHHHHHh----cCCEEEEEEeCCC
Confidence 443333 33322 3446666654321 1222211 22222221 6799999999999
Q ss_pred CCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCcc
Q 028647 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 182 (206)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~~~ 182 (206)
..........+++.+++...+ ++++++||+++ |++++|..+.+.+....|-
T Consensus 168 ~~~~e~~~~~~~~~~~~~~~~-~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~ 218 (301)
T 2qnr_A 168 LTLKERERLKKRILDEIEEHN-IKIYHLPDAES-DEDEDFKEQTRLLKASIPF 218 (301)
T ss_dssp SCHHHHHHHHHHHHHHHHHTT-CCCCCCC----------CHHHHHHHHTTCSE
T ss_pred CCHHHHHHHHHHHHHHHHHcC-CeEEecCCccc-cccHHHHHHHHHhhcCCCc
Confidence 764323344567788888886 89999999999 9999999999999766553
No 181
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.78 E-value=2.4e-18 Score=142.41 Aligned_cols=115 Identities=16% Similarity=0.134 Sum_probs=80.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------------CCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY------------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (206)
.+..+|+++|+.|+|||||+++|++....... ....+.......+... .+.+.+|||||+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG~ 84 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPGY 84 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCCS
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCCc
Confidence 55689999999999999999999843221000 0111222222233333 467899999999
Q ss_pred hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (206)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (206)
..+......+++.+|++++|+|+.+....... .++..+... ++|+++++||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~-------~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL-------GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT-------TCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc-------cCCEEEEecCCchh
Confidence 99988899999999999999999876443332 333333221 78999999999987
No 182
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.78 E-value=3.5e-19 Score=135.53 Aligned_cols=115 Identities=8% Similarity=0.111 Sum_probs=69.7
Q ss_pred EEEEEEeCCChhh-------------hccchhhhhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEE
Q 028647 57 FTLQIWDTAGQER-------------FQSLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVV 122 (206)
Q Consensus 57 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~iv 122 (206)
..+.+|||||... +......++..+|++++|+|.++.. .......++..+ .. .+.|+++
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~----~~---~~~~~i~ 203 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV----DP---EGKRTIG 203 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH----CS---SCSSEEE
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh----CC---CCCcEEE
Confidence 3689999999643 4455667788999999999974322 101111222222 21 1789999
Q ss_pred EEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEee---ccC---CCCHHHHHHHHHHHHHhcCc
Q 028647 123 LGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETS---AKE---GINVEEAFQCIAKNALKSGE 181 (206)
Q Consensus 123 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S---~~~---~~~i~~l~~~l~~~~~~~~~ 181 (206)
|+||+|+..... ...+.+......++ ..+++++ +.+ +.|+.++++.+.+.+.....
T Consensus 204 v~NK~Dl~~~~~--~~~~~~~~~~~~~~-~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~ 265 (315)
T 1jwy_B 204 VITKLDLMDKGT--DAMEVLTGRVIPLT-LGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPI 265 (315)
T ss_dssp EEECTTSSCSSC--CCHHHHTTSSSCCT-TCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTT
T ss_pred EEcCcccCCcch--HHHHHHhCCCccCC-CCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCc
Confidence 999999986532 12222221111111 3455554 455 78999999999988866443
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.77 E-value=1.7e-17 Score=138.04 Aligned_cols=120 Identities=18% Similarity=0.126 Sum_probs=83.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------------CCCccceeEEEEEEEeC-----CeEEEEEE
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK--FSNQ----------------YKATIGADFLTKEVQFE-----DRLFTLQI 61 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~--~~~~----------------~~~~~~~~~~~~~~~~~-----~~~~~~~i 61 (206)
.++..+|+|+|+.|+|||||+++|+... +... .....+.......+.+. +..+.+.|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 4567899999999999999999997531 1100 01112222222223332 23378999
Q ss_pred EeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 62 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
|||||+..|...+...++.+|++|+|+|+++.........|. .... .++|+++|+||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~-------~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK-------YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH-------cCCCEEEEEeCCCcccc
Confidence 999999999888999999999999999999876544443332 2211 17899999999998764
No 184
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.77 E-value=9.3e-18 Score=139.43 Aligned_cols=118 Identities=21% Similarity=0.224 Sum_probs=83.6
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhc--CCCCC-----------C-----CCCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVN--KKFSN-----------Q-----YKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~--~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (206)
..+..+|+|+|++|+|||||+++|+. +.+.. . ..+..+.......+.+.+ ..+.||||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence 35679999999999999999999984 22110 0 011222222223344444 6789999999
Q ss_pred hhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
+..+...+..+++.+|++++|+|++++.+......|.. +... ++|+++|+||+|+...
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~-------~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY-------GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT-------TCCEEEEEECTTSTTC
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc-------CCCEEEEEECCCcccc
Confidence 99998888999999999999999998776665544432 2221 7899999999999764
No 185
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.76 E-value=1.5e-18 Score=135.45 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=48.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEE---------------------eCC-eEEEEEEEeCCC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQ---------------------FED-RLFTLQIWDTAG 66 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~g 66 (206)
++|+++|.+|+|||||+|+|++........++++......... +++ ...++.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998763323333333322222111 122 246899999999
Q ss_pred hhhh----ccc---hhhhhccCcEEEEEEECCCh
Q 028647 67 QERF----QSL---GVAFYRGADCCVLVYDVNSM 93 (206)
Q Consensus 67 ~~~~----~~~---~~~~~~~~d~~i~v~d~~~~ 93 (206)
.... ... ....++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7431 112 22456889999999999874
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.76 E-value=7.4e-19 Score=136.09 Aligned_cols=158 Identities=13% Similarity=0.203 Sum_probs=98.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE-------------------------------------
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE------------------------------------- 49 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~------------------------------------- 49 (206)
...+|+|+|++|||||||+++|++..+.+......+.......
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 3459999999999999999999998764333222211100000
Q ss_pred ---------------EEe-CCeEEEEEEEeCCChhhh-------------ccchhhhhccCcEEEEEEECCChhhHHHHH
Q 028647 50 ---------------VQF-EDRLFTLQIWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVNSMKSFDNLN 100 (206)
Q Consensus 50 ---------------~~~-~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 100 (206)
+.+ ......+.+|||||...+ ......++.++|++++++|..+.+... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 000 011124789999997654 455677889999999999876533221 1
Q ss_pred HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHH
Q 028647 101 NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 173 (206)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~ 173 (206)
.++..+ ..... .+.|+++|+||+|+.... ....+....+...++ .+++.++++.+.++++.+..+.
T Consensus 191 ~~~~l~-~~~~~---~~~~~i~V~nK~Dl~~~~--~~~~~~~~~~~~~~~-~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 191 DAIKIS-REVDP---SGDRTFGVLTKIDLMDKG--TDAVEILEGRSFKLK-YPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp HHHHHH-HHSCT---TCTTEEEEEECGGGCCTT--CCSHHHHTTSSSCCS-SCCEEECCCCHHHHHTTCCHHH
T ss_pred HHHHHH-HHhcc---cCCCEEEEEeCCccCCCc--ccHHHHHcCcccccc-CCeEEEEECChHHhccCCCHHH
Confidence 222222 22222 267999999999998652 233333333333344 7789999999888877655433
No 187
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.75 E-value=4.1e-17 Score=121.52 Aligned_cols=122 Identities=18% Similarity=0.173 Sum_probs=78.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchh-------hh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV-------AF 77 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~ 77 (206)
...++|+++|.+|+|||||+|+|++..+.. ...+..+...........+ ..+.+|||||...+..... .+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 357999999999999999999999877532 2222223233333344444 6789999999765543222 11
Q ss_pred --hccCcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 78 --YRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 78 --~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
...+|++++|+|++... +.. ...|+..+...+... ...|+++|+||+|+...
T Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~--~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCCG
T ss_pred hhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcc--cccCEEEEEECcccCCc
Confidence 24699999999987532 222 235555554443210 02699999999998754
No 188
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.75 E-value=2.8e-17 Score=133.04 Aligned_cols=118 Identities=15% Similarity=0.173 Sum_probs=84.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCC------------------C----CCCCCCccceeEEEEEEEeCCeEEEEEEEe
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKK------------------F----SNQYKATIGADFLTKEVQFEDRLFTLQIWD 63 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 63 (206)
.+..||+|+|+.++|||||..+|+... + ....+...+.......+.+.+ ..+.|+|
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlID 106 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLD 106 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEEC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEe
Confidence 357899999999999999999986211 1 112233333333444455555 6789999
Q ss_pred CCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 028647 64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (206)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 133 (206)
|||+..|.......++-+|++|+|+|+...-..++..-|.... .. ++|.++++||+|....+
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~-~~-------~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCR-MR-------ATPVMTFVNKMDREALH 168 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHH-HT-------TCCEEEEEECTTSCCCC
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHH-Hh-------CCceEEEEecccchhcc
Confidence 9999999999999999999999999999865545444443222 21 88999999999997754
No 189
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.74 E-value=3.4e-18 Score=132.04 Aligned_cols=107 Identities=18% Similarity=0.164 Sum_probs=71.0
Q ss_pred EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc
Q 028647 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV 136 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 136 (206)
+.+.|+||||.. ......+..+|++++|+|....+....+. . .....|+++|+||+|+.+.....
T Consensus 172 ~~~iiiDTpGi~---~~~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~-----~~~~~p~ivVlNK~Dl~~~~~~~ 236 (355)
T 3p32_A 172 FDVILIETVGVG---QSEVAVANMVDTFVLLTLARTGDQLQGIK-------K-----GVLELADIVVVNKADGEHHKEAR 236 (355)
T ss_dssp CCEEEEEECSCS---SHHHHHHTTCSEEEEEEESSTTCTTTTCC-------T-----TSGGGCSEEEEECCCGGGHHHHH
T ss_pred CCEEEEeCCCCC---cHHHHHHHhCCEEEEEECCCCCccHHHHH-------H-----hHhhcCCEEEEECCCCcChhHHH
Confidence 568899999943 22334458899999999987654332111 0 01156999999999986532122
Q ss_pred ccHHHHHHHHHhcC------CCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647 137 VSEKKARAWCASKG------NIPYFETSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 137 ~~~~~~~~~~~~~~------~~~~~~~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
...++........+ ..+++++||++|.|+++++++|.+.+..
T Consensus 237 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 237 LAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 22223333222221 3689999999999999999999998755
No 190
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.72 E-value=5.5e-18 Score=122.56 Aligned_cols=158 Identities=16% Similarity=0.130 Sum_probs=94.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC------CCCccce--------eEEEEEEEe----------------CCe
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ------YKATIGA--------DFLTKEVQF----------------EDR 55 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~------~~~~~~~--------~~~~~~~~~----------------~~~ 55 (206)
....+|+++|.+|+|||||+++|+....... ..+..+. ......+.. ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 3467999999999999999999986521110 0111000 000011111 011
Q ss_pred EEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcc
Q 028647 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSR 135 (206)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (206)
...+.+|||+|+..... .+....+.+++|+|+..... ....+.... +.|+++|+||+|+.+. .
T Consensus 108 ~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~~~----------~~~~iiv~NK~Dl~~~--~ 170 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPEIF----------RVADLIVINKVALAEA--V 170 (221)
T ss_dssp TCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHHHH----------HTCSEEEEECGGGHHH--H
T ss_pred CCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhhhh----------hcCCEEEEecccCCcc--h
Confidence 24577889888411110 11124688999999876532 111111111 5689999999998642 1
Q ss_pred cccHHHHHHHHHhc-CCCcEEEeeccCCCCHHHHHHHHHHHHHhcC
Q 028647 136 VVSEKKARAWCASK-GNIPYFETSAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 136 ~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
....++..+++... +.++++++|+++|.|+++++++|.+.+....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 171 GADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 22345555555543 3478999999999999999999999885543
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.72 E-value=1.2e-18 Score=134.62 Aligned_cols=159 Identities=15% Similarity=0.216 Sum_probs=92.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE----------------------------------------
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFL---------------------------------------- 46 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 46 (206)
...+|+|+|.+|+|||||+|+|++..+.+......+....
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999988764222111000000
Q ss_pred ---------EEEEEe-CCeEEEEEEEeCCChh-------------hhccchhhhhccCc-EEEEEEECCChhhHHHHHHH
Q 028647 47 ---------TKEVQF-EDRLFTLQIWDTAGQE-------------RFQSLGVAFYRGAD-CCVLVYDVNSMKSFDNLNNW 102 (206)
Q Consensus 47 ---------~~~~~~-~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~ 102 (206)
...+.+ ......+.||||||.. .+......++...+ ++++|+|++....-.....+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 000000 0112468999999953 33445556666655 55556676543221222223
Q ss_pred HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHH--HHHhcCCCcEEEeeccCCCCHHHHHHHHHH
Q 028647 103 REEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARA--WCASKGNIPYFETSAKEGINVEEAFQCIAK 174 (206)
Q Consensus 103 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~ 174 (206)
+..+ .. .+.|+++|+||+|+.+.... ..+.... +....+..+++++||+++.|++++++.+.+
T Consensus 190 ~~~~----~~---~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 190 AKEV----DP---QGQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHH----CT---TCTTEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHh----Cc---CCCceEEEeccccccCcchh--HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3332 22 27899999999999765321 1111110 000112246788999999999999999877
No 192
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=130.04 Aligned_cols=161 Identities=15% Similarity=0.185 Sum_probs=78.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC--------CCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc-----
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----- 72 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----- 72 (206)
.-.++|+|+|++|+|||||++.|++..+.... .++.+.......+...+....+++||++|......
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 44688999999999999999999987653111 11111111111112233334789999999654311
Q ss_pred --------------------chhhhhccC--cEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647 73 --------------------LGVAFYRGA--DCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (206)
Q Consensus 73 --------------------~~~~~~~~~--d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 129 (206)
....++.++ |+++++.+.+. .+++.. ..|+..+ .. ++|+|+|+||+|+
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L----~~----~v~iIlVinK~Dl 179 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRL----HE----KVNIIPLIAKADT 179 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHH----TT----TSEEEEEEESTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHH----hc----cCcEEEEEEcccC
Confidence 112233343 44555555431 122222 2344443 21 7899999999999
Q ss_pred CCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028647 130 DGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~ 176 (206)
..........+.+.+++...+ ++++++|+.++.++++++..+.+.+
T Consensus 180 l~~~ev~~~k~~i~~~~~~~~-i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 180 LTPEECQQFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp SCHHHHHHHHHHHHHHHHHHT-CCCCCCC-----------------C
T ss_pred ccHHHHHHHHHHHHHHHHHcC-CeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 764222222366777777775 8999999999999999887777654
No 193
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.70 E-value=1.3e-17 Score=126.02 Aligned_cols=134 Identities=19% Similarity=0.151 Sum_probs=105.1
Q ss_pred HHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChh-hHHHHH
Q 028647 23 SLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLN 100 (206)
Q Consensus 23 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 100 (206)
+|+.+++.+.|. ..+.++.+..+. ..+..++ .+.+||+ ++++..++..+++++|++++|+|++++. +++.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 577788888887 788899885543 3332222 6789999 8889999999999999999999999987 788888
Q ss_pred HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCC-CcEEEeeccCCCCHHHHHHHHH
Q 028647 101 NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGN-IPYFETSAKEGINVEEAFQCIA 173 (206)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~l~~~l~ 173 (206)
.|+..+.. . ++|+++|+||+|+.+. +.. ++..+++..+.. .+++++||++|.|++++|..+.
T Consensus 106 ~~l~~~~~--~-----~~piilv~NK~DL~~~--~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 KFLVLAEK--N-----ELETVMVINKMDLYDE--DDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHH--T-----TCEEEEEECCGGGCCH--HHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHH--C-----CCCEEEEEeHHHcCCc--hhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 88876643 1 7899999999999754 221 445566655543 6899999999999999998764
No 194
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.70 E-value=3.7e-17 Score=138.33 Aligned_cols=120 Identities=18% Similarity=0.231 Sum_probs=85.2
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCC------------CCC----CCCCccce--eEEEEEEE------------eC
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK------------FSN----QYKATIGA--DFLTKEVQ------------FE 53 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~------------~~~----~~~~~~~~--~~~~~~~~------------~~ 53 (206)
.....++|+|+|++++|||||+++|+... +.. ......+. ......+. .+
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~ 94 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD 94 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence 34567899999999999999999998641 110 01111121 11122222 23
Q ss_pred CeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 028647 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (206)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 131 (206)
+..+.+.||||||+..|...+..+++.+|++|+|+|++++.+++....|.... . . ++|+++++||+|+..
T Consensus 95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~--~-----~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G--E-----RIKPVVVINKVDRAL 164 (842)
T ss_dssp SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H--T-----TCEEEEEEECHHHHH
T ss_pred CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H--c-----CCCeEEEEECCCcch
Confidence 44688999999999999999999999999999999999987777655444322 1 1 789999999999863
No 195
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.69 E-value=1e-15 Score=117.38 Aligned_cols=84 Identities=23% Similarity=0.127 Sum_probs=56.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCe---------------EEEEEEEeCCChhhhc--
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQERFQ-- 71 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~-- 71 (206)
++|+++|.||+|||||+|+|++........++++.......+.+.+. ...+.+||+||.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987644333343333333333444442 1468999999975432
Q ss_pred -----cchhhhhccCcEEEEEEECCC
Q 028647 72 -----SLGVAFYRGADCCVLVYDVNS 92 (206)
Q Consensus 72 -----~~~~~~~~~~d~~i~v~d~~~ 92 (206)
......++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 223345789999999999985
No 196
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.68 E-value=4e-16 Score=121.15 Aligned_cols=128 Identities=12% Similarity=0.090 Sum_probs=97.9
Q ss_pred EEEEeCCeEEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhcCCCCCCC
Q 028647 48 KEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----------MKSFDNLNNWREEFLIQASPSDPDN 117 (206)
Q Consensus 48 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~ 117 (206)
..+.+++ +.+++||++|++.+...|..++++++++|+|+|+++ ..+++....|+..+.... ...+
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~---~~~~ 284 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR---WLRT 284 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT---TCSS
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc---cCCC
Confidence 4455565 789999999999999999999999999999999998 889999999988876542 1237
Q ss_pred CcEEEEEeCCCCCCCCcc--c--------------------------ccHHHHHHHH-----Hhc-------CCCcEEEe
Q 028647 118 FPFVVLGNKIDVDGGNSR--V--------------------------VSEKKARAWC-----ASK-------GNIPYFET 157 (206)
Q Consensus 118 ~p~ivv~nK~Dl~~~~~~--~--------------------------~~~~~~~~~~-----~~~-------~~~~~~~~ 157 (206)
+|+++|+||+|+....-. . ...+++..|+ ... ..+.+++|
T Consensus 285 ~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~T 364 (402)
T 1azs_C 285 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFT 364 (402)
T ss_dssp CCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEEC
T ss_pred CeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEE
Confidence 899999999998532100 0 0134555543 211 23567899
Q ss_pred eccCCCCHHHHHHHHHHHHHhcC
Q 028647 158 SAKEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 158 S~~~~~~i~~l~~~l~~~~~~~~ 180 (206)
||+++.||+++|+.+.+.++...
T Consensus 365 SA~d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 365 CAVDTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EeecCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999998887643
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.67 E-value=7.9e-18 Score=129.52 Aligned_cols=106 Identities=13% Similarity=0.043 Sum_probs=62.8
Q ss_pred EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc
Q 028647 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV 136 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 136 (206)
+.+.++||+|... ........+|++++|+|+..+.....+.. .+ . ..|.++|+||+|+.+.....
T Consensus 167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l-----~~~~ivVlNK~Dl~~~~~~~ 231 (349)
T 2www_A 167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI----I-----EMADLVAVTKSDGDLIVPAR 231 (349)
T ss_dssp CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC-------------------C-----CSCSEEEECCCSGGGHHHHH
T ss_pred CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----H-----hcCCEEEEeeecCCCchhHH
Confidence 4678999999531 12344678999999999986543221111 11 1 45889999999986421111
Q ss_pred ccHHHHHHHHHh------cCCCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647 137 VSEKKARAWCAS------KGNIPYFETSAKEGINVEEAFQCIAKNAL 177 (206)
Q Consensus 137 ~~~~~~~~~~~~------~~~~~~~~~S~~~~~~i~~l~~~l~~~~~ 177 (206)
...+........ ....+++.+|+.+|.|+++++++|.+.+.
T Consensus 232 ~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 232 RIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 111112111111 11357899999999999999999998764
No 198
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.9e-15 Score=116.46 Aligned_cols=156 Identities=16% Similarity=0.127 Sum_probs=101.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhh-------ccchhhhhc
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYR 79 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~ 79 (206)
-..+|+++|.||+|||||+|+|++........+++|.+.....+.+.+ .+++++|+||.-.- .......++
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 346899999999999999999999876667778888888888888888 46789999994221 122345668
Q ss_pred cCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC------cccccHHHHHHHHHhcCCC
Q 028647 80 GADCCVLVYDVNSMKS-FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN------SRVVSEKKARAWCASKGNI 152 (206)
Q Consensus 80 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~ 152 (206)
.+|++++|+|+++|.. .+.+..-+..+...+. +.|.++++||.|...-. ......++.+.+...+. .
T Consensus 149 ~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~-----~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~-l 222 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLHHKQIIEKELEGVGIRLN-----KTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYR-I 222 (376)
T ss_dssp HCSEEEEEEETTSHHHHHHHHHHHHHHTTEEET-----CCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTT-C
T ss_pred hcCccccccccCccHHHHHHHHHHHHHhhHhhc-----cCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhc-c
Confidence 8999999999998743 2222222222211111 56888999999974311 12234555555554443 3
Q ss_pred cEEEeeccCCCCHHHHHH
Q 028647 153 PYFETSAKEGINVEEAFQ 170 (206)
Q Consensus 153 ~~~~~S~~~~~~i~~l~~ 170 (206)
..-++....+.+.+++.+
T Consensus 223 t~kpv~~~~nv~eddl~d 240 (376)
T 4a9a_A 223 NSAEIAFRCDATVDDLID 240 (376)
T ss_dssp CSEEEEECSCCCHHHHHH
T ss_pred cCCCeeecccCCHHHHHH
Confidence 333333344445555444
No 199
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.66 E-value=3e-17 Score=135.31 Aligned_cols=168 Identities=17% Similarity=0.222 Sum_probs=109.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC--CCCC----CC----------CCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNK--KFSN----QY----------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~--~~~~----~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (206)
..||+|+|+.++|||||..+|+.. .... .. +..-+.++......+......+.|+|||||..|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 368999999999999999998631 1110 00 0001222222223333344678999999999999
Q ss_pred cchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHH--------
Q 028647 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKAR-------- 143 (206)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-------- 143 (206)
......++-+|++|+|+|+...-..++..-|. ..... ++|.++++||+|....+.... .++++
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~-~a~~~-------~lp~i~~INKmDr~~a~~~~~-~~~i~~~l~~~~~ 152 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTRILFH-ALRKM-------GIPTIFFINKIDQNGIDLSTV-YQDIKEKLSAEIV 152 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHHHHHH-HHHHH-------TCSCEECCEECCSSSCCSHHH-HHHHHHTTCCCCC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHH-HHHHc-------CCCeEEEEeccccccCCHHHH-HHHHHHHhCCCcc
Confidence 99999999999999999998754433332232 22222 789999999999876542111 11100
Q ss_pred ----------------------------------HH------------------HHhcCCCcEEEeeccCCCCHHHHHHH
Q 028647 144 ----------------------------------AW------------------CASKGNIPYFETSAKEGINVEEAFQC 171 (206)
Q Consensus 144 ----------------------------------~~------------------~~~~~~~~~~~~S~~~~~~i~~l~~~ 171 (206)
.+ .......|++..||.++.|++.|++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~ 232 (638)
T 3j25_A 153 IKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEV 232 (638)
T ss_dssp CCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHH
T ss_pred ccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhh
Confidence 00 11122367889999999999999999
Q ss_pred HHHHHHhcCcccc
Q 028647 172 IAKNALKSGEEEE 184 (206)
Q Consensus 172 l~~~~~~~~~~~~ 184 (206)
+.+.++......+
T Consensus 233 i~~~~p~p~~~~~ 245 (638)
T 3j25_A 233 ITNKFYSSTHRGP 245 (638)
T ss_dssp HHHSCCCSGGGSC
T ss_pred hhccccCcccchh
Confidence 9988765444333
No 200
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.66 E-value=3.3e-15 Score=124.65 Aligned_cols=120 Identities=19% Similarity=0.195 Sum_probs=82.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC--------C------CC----CCCCCccceeEEEEEEEeCC-----eEEEEEEE
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNK--------K------FS----NQYKATIGADFLTKEVQFED-----RLFTLQIW 62 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~--------~------~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~ 62 (206)
++..||+|+|+.++|||||..+|+.. . +. ...+...+.......+.+.+ ..+.+.|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 56789999999999999999998631 1 11 12222333333333333332 35789999
Q ss_pred eCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 028647 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (206)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 133 (206)
|||||-.|.......++-+|++|+|+|+...-..++..-|.+.. .. ++|.++++||+|....+
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~-~~-------~lp~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQAN-KY-------GVPRIVYVNKMDRQGAN 153 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH-HH-------TCCEEEEEECSSSTTCC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHH-Hc-------CCCeEEEEccccccCcc
Confidence 99999999999999999999999999999765444433333322 22 88999999999986543
No 201
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.65 E-value=2.3e-16 Score=114.34 Aligned_cols=155 Identities=17% Similarity=0.157 Sum_probs=89.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE------------EEEEEeC-Ce------------------
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFL------------TKEVQFE-DR------------------ 55 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------ 55 (206)
+.++|+|+|.+|||||||+++|+...+.....++.+.++. ...+.++ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999976544322222222211 0111111 10
Q ss_pred -EEEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc
Q 028647 56 -LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS 134 (206)
Q Consensus 56 -~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (206)
...+.++|++|.-... ..+-...+..+.++|........ ..+...+ +.|.++|+||+|+.+.
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~--~~~~~~~----------~~~~iiv~NK~Dl~~~-- 179 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTI--EKHPGIM----------KTADLIVINKIDLADA-- 179 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTT--TTCHHHH----------TTCSEEEEECGGGHHH--
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhH--hhhhhHh----------hcCCEEEEeccccCch--
Confidence 0124445555521000 01111234456666643211100 0011111 5688999999998643
Q ss_pred ccccHHHHHHHHHhc-CCCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647 135 RVVSEKKARAWCASK-GNIPYFETSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 135 ~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
.....++..+++..+ +..+++++||++|.|++++|++|.+.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 180 VGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 223456666666654 34789999999999999999999988754
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.64 E-value=1.4e-16 Score=122.25 Aligned_cols=106 Identities=14% Similarity=0.150 Sum_probs=66.3
Q ss_pred EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc
Q 028647 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV 136 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 136 (206)
+.+.|+||||...... .....+|++++|+|+...+....+.. .. .+.|.++|+||+|+.+.....
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~---------~~~p~ivv~NK~Dl~~~~~~~ 213 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL---------MEVADLIVINKDDGDNHTNVA 213 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH---------HHHCSEEEECCCCTTCHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh---------hcccCEEEEECCCCCChHHHH
Confidence 5689999999543322 24578999999999975532211100 00 045889999999987531111
Q ss_pred ccHHHHHHHHHhcC------CCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647 137 VSEKKARAWCASKG------NIPYFETSAKEGINVEEAFQCIAKNAL 177 (206)
Q Consensus 137 ~~~~~~~~~~~~~~------~~~~~~~S~~~~~~i~~l~~~l~~~~~ 177 (206)
...++.++....++ ..+++++||++|.|+++++++|.+.+.
T Consensus 214 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 214 IARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11123333222222 357899999999999999999999775
No 203
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.64 E-value=2.1e-16 Score=131.05 Aligned_cols=160 Identities=15% Similarity=0.186 Sum_probs=97.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE----------------------------------------
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF---------------------------------------- 45 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~---------------------------------------- 45 (206)
....+|+|+|.+++|||||+|.|++..+.+......|..+
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3457999999999999999999999876322211111100
Q ss_pred -----------EEEEEEeCCeEEEEEEEeCCChhh-------------hccchhhhh-ccCcEEEEEEECCChhhHHHHH
Q 028647 46 -----------LTKEVQFEDRLFTLQIWDTAGQER-------------FQSLGVAFY-RGADCCVLVYDVNSMKSFDNLN 100 (206)
Q Consensus 46 -----------~~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~ 100 (206)
....+...+ ..++.|+||||... +......++ ..+|++++|+|++.........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 011111111 12478999999432 222334444 4689999999998643322222
Q ss_pred HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHH-H-HHhcCCCcEEEeeccCCCCHHHHHHHHHHH
Q 028647 101 NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARA-W-CASKGNIPYFETSAKEGINVEEAFQCIAKN 175 (206)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 175 (206)
.++..+. .. +.|+++|+||+|+....... .+.... . ....+..+++++||.+|.|+++|++.+.+.
T Consensus 208 ~ll~~L~----~~---g~pvIlVlNKiDlv~~~~~~--~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIAKEVD----PQ---GQRTIGVITKLDLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHC----TT---CSSEEEEEECTTSSCTTCCS--HHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHH----hc---CCCEEEEEeCcccCCcchhh--HHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 2333332 11 78999999999998653221 111110 0 001233567889999999999999999874
No 204
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.63 E-value=2.8e-16 Score=127.32 Aligned_cols=120 Identities=18% Similarity=0.177 Sum_probs=79.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEE-----EeC----------------------Ce
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKEV-----QFE----------------------DR 55 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~-----~~~----------------------~~ 55 (206)
...++|+|+|.+|+|||||+|+|++..+. ....++++........ ..+ ++
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999998763 2333333211100000 000 00
Q ss_pred E----------EEEEEEeCCChhh-----------hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC
Q 028647 56 L----------FTLQIWDTAGQER-----------FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD 114 (206)
Q Consensus 56 ~----------~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 114 (206)
- ..+.||||||... +......++..+|++++|+|+++....+....++..+. ..
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~- 217 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR----GH- 217 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT----TC-
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH----hc-
Confidence 0 2478999999754 44556677889999999999987544444445544432 11
Q ss_pred CCCCcEEEEEeCCCCCCC
Q 028647 115 PDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 115 ~~~~p~ivv~nK~Dl~~~ 132 (206)
+.|+++|+||+|+...
T Consensus 218 --~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 218 --EDKIRVVLNKADMVET 233 (550)
T ss_dssp --GGGEEEEEECGGGSCH
T ss_pred --CCCEEEEEECCCccCH
Confidence 6799999999999763
No 205
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.63 E-value=1.6e-15 Score=116.97 Aligned_cols=84 Identities=23% Similarity=0.141 Sum_probs=55.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCC-------------------eEEEEEEEeCCChhh
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-------------------RLFTLQIWDTAGQER 69 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~~ 69 (206)
++|+++|.||+|||||+++|++........+..+.........+.+ ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999997653222222222222222222221 224689999999754
Q ss_pred hc-------cchhhhhccCcEEEEEEECCC
Q 028647 70 FQ-------SLGVAFYRGADCCVLVYDVNS 92 (206)
Q Consensus 70 ~~-------~~~~~~~~~~d~~i~v~d~~~ 92 (206)
.. ......++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 32 223345789999999999975
No 206
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.59 E-value=5.9e-15 Score=109.28 Aligned_cols=115 Identities=13% Similarity=-0.017 Sum_probs=68.1
Q ss_pred EEEEEEeCCChhhhccchh------hhhccCcEEEEEEECCChhhHHHHH---HHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 028647 57 FTLQIWDTAGQERFQSLGV------AFYRGADCCVLVYDVNSMKSFDNLN---NWREEFLIQASPSDPDNFPFVVLGNKI 127 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (206)
+.+.||||||......... ..+.. +++++++|+....+..... .+........ +.|+++|+||+
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~------~~p~~iv~NK~ 181 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL------GATTIPALNKV 181 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH------TSCEEEEECCG
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc------CCCeEEEEecc
Confidence 4688999999765433211 23455 8889999876432222221 1111111111 67999999999
Q ss_pred CCCCCCcccccHHH------HH-H-----------------HHHhcC-CCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647 128 DVDGGNSRVVSEKK------AR-A-----------------WCASKG-NIPYFETSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 128 Dl~~~~~~~~~~~~------~~-~-----------------~~~~~~-~~~~~~~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
|+..........+. .. . +...++ ..+++++|++++.|+++++++|.+.+..
T Consensus 182 D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 182 DLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp GGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 98753210000110 00 0 123333 2489999999999999999999987743
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.53 E-value=2.2e-14 Score=109.83 Aligned_cols=104 Identities=14% Similarity=0.167 Sum_probs=64.1
Q ss_pred EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc
Q 028647 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV 136 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 136 (206)
+.+.|+||+|.... .......+|.+++++|+...+..+.+... +. ..+.++++||+|+... ..
T Consensus 148 ~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~---------~~~~ivvlNK~Dl~~~--~~ 210 (337)
T 2qm8_A 148 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKG---IF---------ELADMIAVNKADDGDG--ER 210 (337)
T ss_dssp CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTT---HH---------HHCSEEEEECCSTTCC--HH
T ss_pred CCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh---------ccccEEEEEchhccCc--hh
Confidence 56889999995421 12345689999999998654321111110 10 2366888899997543 22
Q ss_pred ccHHHHHHHHHh---cC------CCcEEEeeccCCCCHHHHHHHHHHHHH
Q 028647 137 VSEKKARAWCAS---KG------NIPYFETSAKEGINVEEAFQCIAKNAL 177 (206)
Q Consensus 137 ~~~~~~~~~~~~---~~------~~~~~~~S~~~~~~i~~l~~~l~~~~~ 177 (206)
......+++... .. ..+++.+|+.++.|++++++.|.+...
T Consensus 211 ~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 211 RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222223333221 11 367899999999999999999988764
No 208
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.44 E-value=9.6e-14 Score=97.47 Aligned_cols=110 Identities=9% Similarity=-0.046 Sum_probs=72.9
Q ss_pred CChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-CCCCcEEEEEeCC-CCCCCCcccccHHHH
Q 028647 65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD-PDNFPFVVLGNKI-DVDGGNSRVVSEKKA 142 (206)
Q Consensus 65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~ 142 (206)
+|++.++..|.+++.++|++|||+|.+|.+-++ ...-+.++...+.... ..+.|++|++||. |++++.. ..++
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams----~~EI 184 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP----CFYL 184 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCC----HHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCC----HHHH
Confidence 478899999999999999999999999875544 3333334444444432 3589999999985 7865432 2222
Q ss_pred HHHH---HhcCCCcEEEeeccCCCCHHHHHHHHHHHHHhc
Q 028647 143 RAWC---ASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 179 (206)
Q Consensus 143 ~~~~---~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~~ 179 (206)
.+.. .....+.+..|||.+|+|+.+.++||.+.+..+
T Consensus 185 ~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 185 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred HHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 2221 112358899999999999999999999877443
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.42 E-value=5e-12 Score=98.12 Aligned_cols=87 Identities=20% Similarity=0.193 Sum_probs=62.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEeCCe---------------EEEEEEEeCCChhh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER 69 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~ 69 (206)
....+++++|++|+|||||+|.|++... .....++.+..+....+.+.+. ...+.++|+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4467999999999999999999999766 4455565555555555555541 13578999999432
Q ss_pred -------hccchhhhhccCcEEEEEEECCC
Q 028647 70 -------FQSLGVAFYRGADCCVLVYDVNS 92 (206)
Q Consensus 70 -------~~~~~~~~~~~~d~~i~v~d~~~ 92 (206)
+.......++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22344556688999999999863
No 210
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.41 E-value=8.3e-13 Score=99.65 Aligned_cols=97 Identities=19% Similarity=0.124 Sum_probs=76.6
Q ss_pred hhhhccchhhhhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccccc-HHHHHH
Q 028647 67 QERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVS-EKKARA 144 (206)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~~~~~ 144 (206)
++++..+...+++++|++++|+|++++. ++..+..|+..+.. . ++|+++|+||+|+.+. .... .++..+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~-----~~~~ilV~NK~DL~~~--~~v~~~~~~~~ 136 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--F-----KVEPVIVFNKIDLLNE--EEKKELERWIS 136 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--T-----TCEEEEEECCGGGCCH--HHHHHHHHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--C-----CCCEEEEEEcccCCCc--cccHHHHHHHH
Confidence 5667777788999999999999999986 88888888876543 1 7899999999999753 2212 345555
Q ss_pred HHHhcCCCcEEEeeccCCCCHHHHHHHHH
Q 028647 145 WCASKGNIPYFETSAKEGINVEEAFQCIA 173 (206)
Q Consensus 145 ~~~~~~~~~~~~~S~~~~~~i~~l~~~l~ 173 (206)
+....+ .+++++||++|.|++++++.+.
T Consensus 137 ~~~~~g-~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 137 IYRDAG-YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHHTT-CEEEECCTTTCTTHHHHHHHTT
T ss_pred HHHHCC-CeEEEEECCCCCCHHHHHhhcc
Confidence 666665 7899999999999999987653
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.38 E-value=4.5e-13 Score=103.76 Aligned_cols=88 Identities=22% Similarity=0.135 Sum_probs=53.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCe---------------EEEEEEEeCCChhhh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQERF 70 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~ 70 (206)
...++|+++|.+|+|||||+|+|++..+.....+++|..+....+.+.+. ...+.+||+||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 45689999999999999999999988665555555555555555555432 235899999996654
Q ss_pred cc-------chhhhhccCcEEEEEEECCCh
Q 028647 71 QS-------LGVAFYRGADCCVLVYDVNSM 93 (206)
Q Consensus 71 ~~-------~~~~~~~~~d~~i~v~d~~~~ 93 (206)
.. .....++.+|++++|+|+.+.
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 33 456678899999999999753
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.29 E-value=7.5e-13 Score=97.37 Aligned_cols=110 Identities=9% Similarity=-0.046 Sum_probs=74.1
Q ss_pred CCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-CCCCcEEEEEeC-CCCCCCCcccccHHH
Q 028647 64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD-PDNFPFVVLGNK-IDVDGGNSRVVSEKK 141 (206)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK-~Dl~~~~~~~~~~~~ 141 (206)
.+||+..+..|.+++.++|++|||+|.+|.+-++ ...-+.++...+.+.. ..+.|++|++|| .|+.++.. ..+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams----~~E 268 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP----CFY 268 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC----HHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCC----HHH
Confidence 4578899999999999999999999999876544 2222222222222111 238899999996 68876532 222
Q ss_pred HHHHH---HhcCCCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647 142 ARAWC---ASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 142 ~~~~~---~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
+.+.. .....+.+..|||.+|+|+.+.++||.+.+..
T Consensus 269 I~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 269 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 22221 11234789999999999999999999988743
No 213
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.17 E-value=1.1e-10 Score=91.23 Aligned_cols=143 Identities=14% Similarity=0.151 Sum_probs=71.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEEEEeCCeEEEEEEEeCCChhhh-------------
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQY----KATIGADFLTKEVQFEDRLFTLQIWDTAGQERF------------- 70 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------------- 70 (206)
.++++|+|++|+|||||++.|.+..+.... .+..............+....++++|++|....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 467999999999999999999886532111 111111111111122222236789999873211
Q ss_pred -ccch----hhh---------hcc--CcE-EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 028647 71 -QSLG----VAF---------YRG--ADC-CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (206)
Q Consensus 71 -~~~~----~~~---------~~~--~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 133 (206)
...+ ... ... .|+ ++++.|...+-+... .++...+.. +.|+|+|.||+|.....
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-----ieilk~L~~----~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-----LVTMKKLDS----KVNIIPIIAKADAISKS 192 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-----HHHHHHTCS----CSEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-----HHHHHHHhh----CCCEEEEEcchhccchH
Confidence 0011 111 111 233 555666654332222 133333332 78999999999987643
Q ss_pred cccccHHHHHHHHHhcCCCcEEEeecc
Q 028647 134 SRVVSEKKARAWCASKGNIPYFETSAK 160 (206)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~S~~ 160 (206)
+.....+.+.+..... +++++.+|..
T Consensus 193 E~~~l~~~I~~~L~~~-gi~I~~is~~ 218 (427)
T 2qag_B 193 ELTKFKIKITSELVSN-GVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHHHHHHBTT-BCCCCCCC--
T ss_pred HHHHHHHHHHHHHHHc-CCcEEecCCC
Confidence 2222333333322333 4778887754
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.16 E-value=5.8e-12 Score=97.56 Aligned_cols=140 Identities=17% Similarity=0.176 Sum_probs=81.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC------CCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhc-------cchh
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK------KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGV 75 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~ 75 (206)
.+|+++|.+|+|||||+|+|++. .......++++.. ...+.+... +.++||||..... ....
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 57999999999999999999975 2222233333333 333444432 6799999943211 1111
Q ss_pred hhh---ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCC
Q 028647 76 AFY---RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNI 152 (206)
Q Consensus 76 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (206)
..+ +..+.++++++......+..+.. +..+. ..+.|+++++||.|..+. .........+.+.++ .
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~---~~~~~~~~v~~k~d~~~~---~~~~~~~~~~~~~~g-~ 305 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIK---GGRRSFVCYMANELTVHR---TKLEKADSLYANQLG-E 305 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEE---SSSEEEEEEECTTSCEEE---EEGGGHHHHHHHHBT-T
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE-----EEEcc---CCCceEEEEecCCccccc---ccHHHHHHHHHHhcC-C
Confidence 222 56899999998843211111100 11111 126899999999998763 333444444555565 5
Q ss_pred cEEEeeccCCCCH
Q 028647 153 PYFETSAKEGINV 165 (206)
Q Consensus 153 ~~~~~S~~~~~~i 165 (206)
.+.+.++.+.+++
T Consensus 306 ~l~p~~~~~~~~~ 318 (369)
T 3ec1_A 306 LLSPPSKRYAAEF 318 (369)
T ss_dssp TBCSSCGGGTTTC
T ss_pred ccCCCCchhhhhc
Confidence 6666666654444
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.11 E-value=1.5e-10 Score=85.79 Aligned_cols=139 Identities=16% Similarity=0.206 Sum_probs=71.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------CCccceeEEEEEEEeCCeE--EEEEEEeCCChhhhc-------
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQY-------KATIGADFLTKEVQFEDRL--FTLQIWDTAGQERFQ------- 71 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~i~D~~g~~~~~------- 71 (206)
.++++++|++|+|||||++.|++...+... ....+.......+...... ..++++|++|.....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 489999999999999999999864322110 0000000011111122222 257899999821100
Q ss_pred ---cch------------------hhhhccCcEEEEEEECC-ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 028647 72 ---SLG------------------VAFYRGADCCVLVYDVN-SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (206)
Q Consensus 72 ---~~~------------------~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 129 (206)
... ...+..+++.++++|.. .+-+... ...+..+ .. ..++++|++|+|.
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L----~~----~~~vI~Vi~K~D~ 152 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL----SK----VVNIIPVIAKADT 152 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH----HT----TSEEEEEETTGGG
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH----Hh----cCcEEEEEecccc
Confidence 000 01123468889999865 2222111 2222222 11 3689999999998
Q ss_pred CCCCcccccHHHHHHHHHhcCCCcEEE
Q 028647 130 DGGNSRVVSEKKARAWCASKGNIPYFE 156 (206)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
....+.....+.+.+.....+ +.+++
T Consensus 153 lt~~e~~~~k~~i~~~l~~~~-i~i~~ 178 (270)
T 3sop_A 153 MTLEEKSEFKQRVRKELEVNG-IEFYP 178 (270)
T ss_dssp SCHHHHHHHHHHHHHHHHHTT-CCCSS
T ss_pred CCHHHHHHHHHHHHHHHHHcC-ccccC
Confidence 765433344444454445554 55543
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.09 E-value=2.5e-10 Score=91.36 Aligned_cols=153 Identities=17% Similarity=0.168 Sum_probs=83.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHh------cCCCC----CCCCCcc-----------ceeEEEEEEE-------------
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYV------NKKFS----NQYKATI-----------GADFLTKEVQ------------- 51 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~------~~~~~----~~~~~~~-----------~~~~~~~~~~------------- 51 (206)
.++..|+++|.+||||||++++|. +.+.. +.+.+.. +..+......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 456789999999999999999998 33211 0111110 0111110000
Q ss_pred eCCeEEEEEEEeCCChhhhcc----chhhh--hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcE-EEEE
Q 028647 52 FEDRLFTLQIWDTAGQERFQS----LGVAF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF-VVLG 124 (206)
Q Consensus 52 ~~~~~~~~~i~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~ 124 (206)
.....+.+.|+||||...... ..... +..+|.+++|+|+....... .....+.. .+|+ ++|+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~--------~~~i~gvVl 247 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD--------KVDVASVIV 247 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH--------HHCCCCEEE
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh--------hcCceEEEE
Confidence 000225688999999643211 11111 22689999999998753311 12222221 2364 8999
Q ss_pred eCCCCCCCCcccccHHHHHHHHHhcC-----------------CCcEEEeeccCCCC-HHHHHHHHHHH
Q 028647 125 NKIDVDGGNSRVVSEKKARAWCASKG-----------------NIPYFETSAKEGIN-VEEAFQCIAKN 175 (206)
Q Consensus 125 nK~Dl~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~S~~~~~~-i~~l~~~l~~~ 175 (206)
||.|....... ... ....++ ..+...+|+..|.| +.+|++++.+.
T Consensus 248 NK~D~~~~~g~--~l~----~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 248 TKLDGHAKGGG--ALS----AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp ECTTSCCCCTH--HHH----HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred eCCccccchHH--HHH----HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 99998643211 111 112222 12234578888988 99999988766
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.06 E-value=1.4e-11 Score=95.28 Aligned_cols=135 Identities=13% Similarity=0.133 Sum_probs=74.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-------CCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhhhcc----chh--
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFS-------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----LGV-- 75 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~-- 75 (206)
.+|+++|.+|+|||||+|+|++.... ....+.++ .....+.+.+. +.++||||...... ...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTT--LDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCee--cceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence 57999999999999999999875321 12222222 22333444433 67999999432211 111
Q ss_pred --hh--hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCC
Q 028647 76 --AF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGN 151 (206)
Q Consensus 76 --~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
.. ....+.++++++.........+.. +..+. ..+.|+++++||.|..+. .........+.+.++
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~---~~~~~~~~v~nk~d~~~~---~~~~~~~~~~~~~~g- 303 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVS---GGRRAFTCHFSNRLTIHR---TKLEKADELYKNHAG- 303 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEE---SSSEEEEEEECTTSCEEE---EEHHHHHHHHHHHBT-
T ss_pred HHHhccccccCceEEEEcCCCEEEEcceEE-----EEEec---CCCceEEEEecCcccccc---ccHHHHHHHHHHHhC-
Confidence 11 255788899998742211111100 11111 126899999999998763 333444444445555
Q ss_pred CcEEEeecc
Q 028647 152 IPYFETSAK 160 (206)
Q Consensus 152 ~~~~~~S~~ 160 (206)
..+.+.++.
T Consensus 304 ~~l~p~~~~ 312 (368)
T 3h2y_A 304 DLLSPPTPE 312 (368)
T ss_dssp TTBCSSCHH
T ss_pred CccCCCchh
Confidence 445555543
No 218
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.04 E-value=7.2e-10 Score=85.76 Aligned_cols=101 Identities=17% Similarity=0.156 Sum_probs=72.0
Q ss_pred ChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc-ccccHHHHHH
Q 028647 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-RVVSEKKARA 144 (206)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~ 144 (206)
..+.|.+...++.+.+|++++|+|+.++. ..|...+..... +.|+++|+||+|+.+... .....+....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-----~~p~ilV~NK~DL~~~~~~~~~~~~~l~~ 124 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-----NNKVLLVGNKADLIPKSVKHDKVKHWMRY 124 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-----SSCEEEEEECGGGSCTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-----CCcEEEEEEChhcCCcccCHHHHHHHHHH
Confidence 35778888889999999999999999864 344444444433 789999999999976421 1112223333
Q ss_pred HHHhcCC--CcEEEeeccCCCCHHHHHHHHHHHH
Q 028647 145 WCASKGN--IPYFETSAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 145 ~~~~~~~--~~~~~~S~~~~~~i~~l~~~l~~~~ 176 (206)
+....+. ..++.+||++|.|++++++.|.+..
T Consensus 125 ~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 125 SAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 3455552 2799999999999999999997654
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.03 E-value=4.1e-09 Score=82.36 Aligned_cols=162 Identities=14% Similarity=0.177 Sum_probs=87.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcc-ceeE--EEEEEEeCCeEEEEEEEeCCChhhhccchhhh-----hc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-GADF--LTKEVQFEDRLFTLQIWDTAGQERFQSLGVAF-----YR 79 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~~ 79 (206)
...++++|++|||||||+|.+.+-..+....... +.+. ...... ....-.+.++|++|..........+ +.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 4579999999999999999998743221111100 0000 001111 1111147899999853221112222 23
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC---------CCCcccccHHHHHHHHH---
Q 028647 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD---------GGNSRVVSEKKARAWCA--- 147 (206)
Q Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~---------~~~~~~~~~~~~~~~~~--- 147 (206)
..+..++ ++...+.. . -..+...+... +.|+++|.||.|+. +...+....+.++++..
T Consensus 148 ~~~~~~~-lS~G~~~k-q-rv~la~aL~~~-------~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l 217 (413)
T 1tq4_A 148 EYDFFII-ISATRFKK-N-DIDIAKAISMM-------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF 217 (413)
T ss_dssp GCSEEEE-EESSCCCH-H-HHHHHHHHHHT-------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCeEE-eCCCCccH-H-HHHHHHHHHhc-------CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 3455555 77753211 1 11222222221 67999999999864 11112233344444431
Q ss_pred -h--cCCCcEEEeec--cCCCCHHHHHHHHHHHHHhcC
Q 028647 148 -S--KGNIPYFETSA--KEGINVEEAFQCIAKNALKSG 180 (206)
Q Consensus 148 -~--~~~~~~~~~S~--~~~~~i~~l~~~l~~~~~~~~ 180 (206)
. .+...++.+|+ .++.|++++.+.+.+.+.+.+
T Consensus 218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 2 22346888999 566679999999988875544
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.95 E-value=1.3e-09 Score=84.43 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=71.4
Q ss_pred ChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc-ccccHHHHHH
Q 028647 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNS-RVVSEKKARA 144 (206)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~ 144 (206)
.++.|.+...+++..++++++|+|+.++.+ .|...+...+. +.|+++|+||+|+.+... .....+...+
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-----~~piilV~NK~DLl~~~~~~~~~~~~l~~ 126 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-----DNPILLVGNKADLLPRSVKYPKLLRWMRR 126 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-----TSCEEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-----CCCEEEEEEChhcCCCccCHHHHHHHHHH
Confidence 477888888888899999999999998763 23333333332 679999999999976421 1122223333
Q ss_pred HHHhcCC--CcEEEeeccCCCCHHHHHHHHHHHH
Q 028647 145 WCASKGN--IPYFETSAKEGINVEEAFQCIAKNA 176 (206)
Q Consensus 145 ~~~~~~~--~~~~~~S~~~~~~i~~l~~~l~~~~ 176 (206)
+....+. ..++.+||++|.|++++++.+.+..
T Consensus 127 ~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 127 MAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3455552 3689999999999999999997765
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.89 E-value=2.7e-09 Score=79.63 Aligned_cols=101 Identities=15% Similarity=0.103 Sum_probs=69.2
Q ss_pred EEeCCChh-hhccchhhhhccCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccc
Q 028647 61 IWDTAGQE-RFQSLGVAFYRGADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV 137 (206)
Q Consensus 61 i~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 137 (206)
+-..||+. .........+..+|++++|+|+.+|.+... +.++ .. ++|.++|+||+|+.+. .
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~-------l~-----~kp~ilVlNK~DL~~~----~ 66 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI-------LK-----NKPRIMLLNKADKADA----A 66 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHH-------CS-----SSCEEEEEECGGGSCH----H
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHH-------HC-----CCCEEEEEECcccCCH----H
Confidence 34578875 455667778899999999999999876542 2222 11 7899999999999752 1
Q ss_pred cHHHHHHHHHhcCCCcEEEeeccCCCCHHHHHHHHHHHHHh
Q 028647 138 SEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 178 (206)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~~~~ 178 (206)
..+...++....+ .+++.+|+.++.|++++++.+.+.+..
T Consensus 67 ~~~~~~~~~~~~g-~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 67 VTQQWKEHFENQG-IRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHHHHHHHHTTT-CCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 1223333444444 689999999999999999988877653
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.77 E-value=1.6e-08 Score=79.49 Aligned_cols=140 Identities=16% Similarity=0.132 Sum_probs=75.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc------CCCC----CCCCCc-----------cceeEEEEEEEeC------------
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVN------KKFS----NQYKAT-----------IGADFLTKEVQFE------------ 53 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~------~~~~----~~~~~~-----------~~~~~~~~~~~~~------------ 53 (206)
++..|+++|++|+||||++..|.. .++. +.+.+. .+...+......+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 468899999999999999998863 1110 011110 0111111000000
Q ss_pred -CeEEEEEEEeCCChhhhccc----hh--hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q 028647 54 -DRLFTLQIWDTAGQERFQSL----GV--AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126 (206)
Q Consensus 54 -~~~~~~~i~D~~g~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 126 (206)
...+.+.|+||+|....... .. ..+..+|.+++|+|+....... .....+... -.+..+|+||
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~-------~~i~gVIlTK 248 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEA-------TPIGSIIVTK 248 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHS-------CTTEEEEEEC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhh-------CCCeEEEEEC
Confidence 01146789999994322111 11 2234589999999998653322 222333221 2256799999
Q ss_pred CCCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 127 IDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
.|.... ...+..+....+ .|+.+++. |+++
T Consensus 249 lD~~~~------gG~~ls~~~~~g-~PI~fig~--Ge~v 278 (443)
T 3dm5_A 249 LDGSAK------GGGALSAVAATG-APIKFIGT--GEKI 278 (443)
T ss_dssp CSSCSS------HHHHHHHHHTTC-CCEEEEEC--SSST
T ss_pred CCCccc------ccHHHHHHHHHC-CCEEEEEc--CCCh
Confidence 997543 223334444554 78887775 4443
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.60 E-value=4.3e-08 Score=73.09 Aligned_cols=57 Identities=25% Similarity=0.430 Sum_probs=35.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEeCCeEEEEEEEeCCCh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (206)
...++++++|.||+|||||+|+|.+.... ....+.+|... ..+.... .+.++||||.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~ 175 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGI 175 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee--EEEEeCC---CEEEEECcCc
Confidence 45689999999999999999999987633 22233333222 2222332 4689999995
No 224
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.55 E-value=4e-08 Score=77.19 Aligned_cols=90 Identities=18% Similarity=0.060 Sum_probs=51.3
Q ss_pred EEEEEEeCCChhh--hcc----chhh--hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 028647 57 FTLQIWDTAGQER--FQS----LGVA--FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (206)
Q Consensus 57 ~~~~i~D~~g~~~--~~~----~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 128 (206)
+.+.++||||... ... .... .....+.+++|+|+........ ....+... -.+..||+||.|
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~-------~~~~gVIlTKlD 249 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA-------SPIGSVIITKMD 249 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH-------CSSEEEEEECGG
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc-------cCCcEEEEeccc
Confidence 4577999999533 111 1111 1224689999999986533222 22333222 235789999999
Q ss_pred CCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCH
Q 028647 129 VDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINV 165 (206)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 165 (206)
.... ......+....+ .|+.+++. |+++
T Consensus 250 ~~a~------~G~als~~~~~g-~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 250 GTAK------GGGALSAVVATG-ATIKFIGT--GEKI 277 (433)
T ss_dssp GCSC------HHHHHHHHHHHT-CEEEEEEC--CSSS
T ss_pred cccc------chHHHHHHHHHC-CCEEEEEC--CCCh
Confidence 6532 223334444454 78888776 5544
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.51 E-value=4.5e-08 Score=72.23 Aligned_cols=56 Identities=27% Similarity=0.371 Sum_probs=34.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChh
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (206)
++++++|.+|+|||||+|+|.+..... ..++.+.+.....+.... .+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCcc
Confidence 589999999999999999999876432 122222222222222222 46899999954
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.46 E-value=1.4e-07 Score=76.83 Aligned_cols=64 Identities=25% Similarity=0.255 Sum_probs=38.7
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcc---ceeEEEEEEEe-CCeEEEEEEEeCCChh
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI---GADFLTKEVQF-EDRLFTLQIWDTAGQE 68 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~i~D~~g~~ 68 (206)
..+..+|+|+|.||+|||||+|+|++.........++ +.........+ ......+.++||||..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 4567899999999999999999999876321111111 11111111111 1122457899999954
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.45 E-value=7.2e-07 Score=70.32 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=20.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~ 30 (206)
.+..|+++|++|+||||+++.|..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
No 228
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.43 E-value=6.9e-07 Score=67.06 Aligned_cols=91 Identities=20% Similarity=0.104 Sum_probs=53.4
Q ss_pred EEEEEEeCCChhh--hcc-chh-----hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCC
Q 028647 57 FTLQIWDTAGQER--FQS-LGV-----AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKI 127 (206)
Q Consensus 57 ~~~~i~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~ 127 (206)
+.+.++||||... ... ... ..+..+|.+++|+|+..... .......+.. ..| ..+|+||.
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~--------~~~i~gvVlnk~ 249 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ--------ASKIGTIIITKM 249 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH--------TCTTEEEEEECG
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh--------hCCCCEEEEeCC
Confidence 4578999999655 221 111 13446899999999875322 2222222221 235 67899999
Q ss_pred CCCCCCcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647 128 DVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167 (206)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (206)
|.... ......+....+ .|+.+++ .|+++++
T Consensus 250 D~~~~------~g~~~~~~~~~~-~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 250 DGTAK------GGGALSAVAATG-ATIKFIG--TGEKIDE 280 (297)
T ss_dssp GGCTT------HHHHHHHHHTTT-CCEEEEE--CSSSTTC
T ss_pred CCCcc------hHHHHHHHHHHC-cCEEEEe--CCCChhh
Confidence 96432 223444555565 7887776 4555554
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.37 E-value=3.6e-07 Score=68.73 Aligned_cols=92 Identities=13% Similarity=0.049 Sum_probs=58.8
Q ss_pred ccchhhhhccCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhc
Q 028647 71 QSLGVAFYRGADCCVLVYDVNSMKS-FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK 149 (206)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (206)
....+..+.++|.+++|+|+.+|.. ...+.+++.... .. ++|.++|+||+|+.+........+...++....
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----~~---~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~ 149 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----AN---DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI 149 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TT---TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HC---CCCEEEEEECCccCchhhhHHHHHHHHHHHHhC
Confidence 3444557889999999999997754 333333332221 11 789999999999986511001123344444445
Q ss_pred CCCcEEEeeccCCCCHHHHHH
Q 028647 150 GNIPYFETSAKEGINVEEAFQ 170 (206)
Q Consensus 150 ~~~~~~~~S~~~~~~i~~l~~ 170 (206)
+ .+++.+|+.++.|+++|++
T Consensus 150 g-~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 150 G-YDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp T-CCEEECCHHHHTTCTTTGG
T ss_pred C-CeEEEEecCCCCCHHHHHh
Confidence 5 7899999999888776543
No 230
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.35 E-value=6.6e-07 Score=65.95 Aligned_cols=93 Identities=15% Similarity=0.029 Sum_probs=60.8
Q ss_pred CCChhh-hccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHH
Q 028647 64 TAGQER-FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKA 142 (206)
Q Consensus 64 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 142 (206)
.|||.. ........+.++|++++|+|+.+|.+.... .+ . . . ++|.++|+||+|+.+. . ..+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l----~-l-l-~k~~iivlNK~DL~~~---~-~~~~~ 67 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GV----D-F-S-RKETIILLNKVDIADE---K-TTKKW 67 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TS----C-C-T-TSEEEEEEECGGGSCH---H-HHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HH----H-h-c-CCCcEEEEECccCCCH---H-HHHHH
Confidence 466542 334567778999999999999988664321 11 1 1 1 6799999999999763 1 12233
Q ss_pred HHHHHhcCCCcEEEeeccCCCCHHHHHHHHHH
Q 028647 143 RAWCASKGNIPYFETSAKEGINVEEAFQCIAK 174 (206)
Q Consensus 143 ~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~ 174 (206)
.++....+ .++ .+|+.++.|++++++.+.+
T Consensus 68 ~~~~~~~g-~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 68 VEFFKKQG-KRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHHHHHTT-CCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHHHHHcC-CeE-EEECCCCcCHHHHHHHHHH
Confidence 33444444 677 9999999999998877654
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.33 E-value=5.3e-07 Score=74.19 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++|+|+.|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998764
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.20 E-value=5.4e-06 Score=63.01 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=49.0
Q ss_pred EEEEeCCChhhhccchhh------hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 028647 59 LQIWDTAGQERFQSLGVA------FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (206)
Q Consensus 59 ~~i~D~~g~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 132 (206)
+.++|++|.......... ..-..|-.++++|+.... .+...+..+.... + ..++++||.|-...
T Consensus 214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~------~-it~iilTKlD~~a~ 283 (328)
T 3e70_C 214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV------K-IDGIILTKLDADAR 283 (328)
T ss_dssp EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS------C-CCEEEEECGGGCSC
T ss_pred hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc------C-CCEEEEeCcCCccc
Confidence 557999995332221111 112478899999986542 2223333333221 1 34788999995322
Q ss_pred CcccccHHHHHHHHHhcCCCcEEEeeccCCCCHHH
Q 028647 133 NSRVVSEKKARAWCASKGNIPYFETSAKEGINVEE 167 (206)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 167 (206)
.-.........+ .|+.+++ .|+++++
T Consensus 284 ------~G~~l~~~~~~~-~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 284 ------GGAALSISYVID-APILFVG--VGQGYDD 309 (328)
T ss_dssp ------CHHHHHHHHHHT-CCEEEEE--CSSSTTC
T ss_pred ------hhHHHHHHHHHC-CCEEEEe--CCCCccc
Confidence 222334455555 7888877 5555543
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.13 E-value=1.4e-05 Score=61.38 Aligned_cols=86 Identities=10% Similarity=0.032 Sum_probs=53.8
Q ss_pred hhhccCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcccccHHHHHHHHHhcCCCcE
Q 028647 76 AFYRGADCCVLVYDVNSMKS-FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPY 154 (206)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (206)
..+.++|.+++|.+. .|.. ...+.+++...... ++|.++|+||+|+.+.... ...+.........+ .++
T Consensus 126 ~i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~-------~~~~iivlNK~DL~~~~~~-~~~~~~~~~y~~~G-~~v 195 (358)
T 2rcn_A 126 PIAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL-------QVEPLIVLNKIDLLDDEGM-DFVNEQMDIYRNIG-YRV 195 (358)
T ss_dssp EEEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH-------TCEEEEEEECGGGCCHHHH-HHHHHHHHHHHTTT-CCE
T ss_pred HHHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc-------CCCEEEEEECccCCCchhH-HHHHHHHHHHHhCC-CcE
Confidence 346889999988665 4543 33344443322222 7788999999999864110 01122222333444 789
Q ss_pred EEeeccCCCCHHHHHHH
Q 028647 155 FETSAKEGINVEEAFQC 171 (206)
Q Consensus 155 ~~~S~~~~~~i~~l~~~ 171 (206)
+.+|+.++.|++++...
T Consensus 196 ~~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 196 LMVSSHTQDGLKPLEEA 212 (358)
T ss_dssp EECBTTTTBTHHHHHHH
T ss_pred EEEecCCCcCHHHHHHh
Confidence 99999999999987654
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.07 E-value=7.1e-05 Score=59.07 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=23.8
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
..+..-|.|+|++++|||||+|.|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 456788999999999999999999863
No 235
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.94 E-value=0.0002 Score=56.46 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHh
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~ 29 (206)
.++..|+++|.+|+||||+...|.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345788999999999999998876
No 236
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.83 E-value=1.5e-06 Score=69.42 Aligned_cols=100 Identities=10% Similarity=0.005 Sum_probs=54.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEeCCeEEEEEEEeCCChhh--hccch--------h
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--FQSLG--------V 75 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~--------~ 75 (206)
...+.|+++|.+||||||+.++|........ ..+.............+......+||..|... ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999875421100 01100000000000011112235788888632 22222 4
Q ss_pred hhhccCcEEEEEEECCChhhHHHHHHHHHHHH
Q 028647 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFL 107 (206)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 107 (206)
.++...++.++|+|.++. +.+....|...+.
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~ 146 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGE 146 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHH
Confidence 455567888999999986 3444455544443
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.68 E-value=2.3e-05 Score=54.25 Aligned_cols=23 Identities=48% Similarity=0.920 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
++++++|++|||||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988754
No 238
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.62 E-value=3.9e-05 Score=52.70 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=22.9
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
|..+......|+++|++||||||+.+.|..
T Consensus 1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp --CCCTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCccCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 444444556799999999999999998864
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.58 E-value=3.8e-05 Score=53.15 Aligned_cols=22 Identities=32% Similarity=0.739 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.53 E-value=4.9e-05 Score=53.49 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
-.++|+|++|||||||++.|.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999875
No 241
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.46 E-value=7e-05 Score=58.80 Aligned_cols=85 Identities=20% Similarity=0.124 Sum_probs=45.3
Q ss_pred EEEEEEeCCChhhhccchh------hhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647 57 FTLQIWDTAGQERFQSLGV------AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (206)
+.+.|+||||......... ..+-.+|.+++|+|+.... ........+.... + ..-+|+||.|-.
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~l------~-i~GVIlTKlD~~ 250 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEKV------G-VTGLVLTKLDGD 250 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHT------C-CCEEEEESGGGC
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhcC------C-ceEEEEeCcCCc
Confidence 4578999999543321111 1123589999999986432 2222223332211 1 246789999964
Q ss_pred CCCcccccHHHHHHHHHhcCCCcEEEee
Q 028647 131 GGNSRVVSEKKARAWCASKGNIPYFETS 158 (206)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (206)
.. ......+....+ .|+.++.
T Consensus 251 ~~------~g~alsi~~~~g-~PI~flg 271 (425)
T 2ffh_A 251 AR------GGAALSARHVTG-KPIYFAG 271 (425)
T ss_dssp SS------CHHHHHHHHHHC-CCEEEEE
T ss_pred cc------HHHHHHHHHHHC-CCEEEEe
Confidence 32 112333444554 6666655
No 242
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.46 E-value=6.9e-05 Score=52.75 Aligned_cols=22 Identities=45% Similarity=0.555 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-++++|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999998764
No 243
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.44 E-value=7e-05 Score=52.07 Aligned_cols=22 Identities=32% Similarity=0.684 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-++|+|++|||||||++.|.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999998853
No 244
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.42 E-value=1.7e-05 Score=55.19 Aligned_cols=21 Identities=33% Similarity=0.725 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028647 11 VIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
|+|+||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999864
No 245
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.41 E-value=8.8e-05 Score=52.53 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.....|+|+|++|||||||++.|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999988753
No 246
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.41 E-value=9.3e-05 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
-.++++|++||||||+++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999875
No 247
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.40 E-value=7.7e-05 Score=51.17 Aligned_cols=20 Identities=30% Similarity=0.654 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 028647 10 KVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~ 29 (206)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 57899999999999999654
No 248
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.40 E-value=0.00036 Score=52.38 Aligned_cols=20 Identities=40% Similarity=0.718 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 028647 10 KVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~ 29 (206)
.++++|++|+|||||+|.|.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999998
No 249
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.40 E-value=8.7e-05 Score=52.52 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-++++|++|||||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999998764
No 250
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.39 E-value=4.9e-05 Score=57.11 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
-.++++|++|||||||+|.|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 368999999999999999998643
No 251
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.39 E-value=9.5e-05 Score=52.91 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
--++|+|++|||||||++.|.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 357899999999999999988643
No 252
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.38 E-value=9.9e-05 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.678 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
--|+|+|++|+|||||++.|...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 35789999999999999999864
No 253
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.37 E-value=0.00012 Score=51.78 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=23.9
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
|.+.......|+|.|.+||||||+.+.|..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 3 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp TTCCCBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccchhhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 334344567899999999999999998875
No 254
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.37 E-value=9.8e-05 Score=52.76 Aligned_cols=23 Identities=39% Similarity=0.735 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
-.++|+|++|||||||++.|.+.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35799999999999999998864
No 255
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.37 E-value=0.00011 Score=52.01 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
.+...|+|+|++|||||||++.|.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998875
No 256
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.35 E-value=0.00011 Score=52.03 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
--|+|+|++||||||+++.|....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 458999999999999999998653
No 257
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.31 E-value=0.00015 Score=50.84 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=23.2
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
-.....+..|+|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 2 GHEAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp ----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 344556688999999999999999998865
No 258
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.31 E-value=0.00016 Score=49.67 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5689999999999999999986
No 259
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.30 E-value=0.00014 Score=49.71 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
..|+++|++||||||+.+.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988763
No 260
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.28 E-value=0.00015 Score=51.19 Aligned_cols=24 Identities=29% Similarity=0.643 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
..-|+|+|++||||||+.+.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999998754
No 261
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.28 E-value=0.00015 Score=51.30 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
++|+++|+|||||+|...+|...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988753
No 262
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.27 E-value=0.00015 Score=51.50 Aligned_cols=22 Identities=23% Similarity=0.605 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 263
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.27 E-value=0.00014 Score=52.59 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4799999999999999988864
No 264
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.27 E-value=0.00015 Score=50.98 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~ 32 (206)
...|+++|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3568999999999999999988654
No 265
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.26 E-value=0.00016 Score=51.38 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 266
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.26 E-value=0.00017 Score=51.62 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 267
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.26 E-value=0.00017 Score=49.14 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCCHHHHHHHH
Q 028647 9 LKVIILGDSGVGKTSLMNQY 28 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l 28 (206)
+.|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 268
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.25 E-value=0.00017 Score=48.81 Aligned_cols=24 Identities=33% Similarity=0.492 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
-.++++|+.|+|||||++.+.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999988754
No 269
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.25 E-value=0.00016 Score=50.22 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
.++++|++||||||+++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 270
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.24 E-value=0.00018 Score=50.58 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
.-.|+|+|++||||||+++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998865
No 271
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.23 E-value=0.00019 Score=48.87 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
..|+|.|++||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998753
No 272
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.22 E-value=0.00019 Score=52.19 Aligned_cols=22 Identities=36% Similarity=0.705 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHh
Q 028647 8 LLKVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~ 29 (206)
+..|+|+|++||||||+++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999988
No 273
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.22 E-value=0.00022 Score=51.78 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=22.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
.+++.|+|.|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999864
No 274
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.21 E-value=0.00027 Score=48.90 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998874
No 275
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.21 E-value=0.00018 Score=51.64 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988864
No 276
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.20 E-value=0.00021 Score=54.82 Aligned_cols=24 Identities=42% Similarity=0.595 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKKF 33 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~ 33 (206)
.++++|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 579999999999999999997543
No 277
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.19 E-value=0.0002 Score=49.94 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5799999999999999988753
No 278
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.19 E-value=0.00021 Score=51.81 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998864
No 279
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.19 E-value=0.00018 Score=50.55 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...|+|+|++||||||+.+.|...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999988753
No 280
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.17 E-value=0.00023 Score=50.80 Aligned_cols=24 Identities=17% Similarity=0.469 Sum_probs=21.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~ 30 (206)
+.+.|+|+|++||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998865
No 281
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.16 E-value=0.0003 Score=49.60 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 282
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.15 E-value=0.00023 Score=52.39 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 283
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.15 E-value=0.00027 Score=49.09 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
+..|++.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999875
No 284
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.15 E-value=0.00024 Score=49.99 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
+.|+|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 285
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.15 E-value=0.00023 Score=52.73 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988864
No 286
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.15 E-value=0.00026 Score=49.61 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998875
No 287
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.15 E-value=0.00024 Score=50.58 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999998864
No 288
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.14 E-value=0.0051 Score=43.41 Aligned_cols=65 Identities=22% Similarity=0.106 Sum_probs=43.8
Q ss_pred EEEEEEeCCCh-hhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 028647 57 FTLQIWDTAGQ-ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (206)
Q Consensus 57 ~~~~i~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 130 (206)
+.+.++|+|+. .. ......+..+|.+++++..+ ..+.......+..+.... +.++.+|+|+.|..
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~------~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG------NNRFRILLTIIPPY 133 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC------SSSEEEEECSBCCT
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc------CCCEEEEEEecCCc
Confidence 45789999986 32 33455677899999999775 444555555555544321 45688999999854
No 289
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.14 E-value=0.00024 Score=51.45 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 290
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.13 E-value=0.00025 Score=52.28 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999998864
No 291
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.13 E-value=0.00025 Score=52.15 Aligned_cols=22 Identities=18% Similarity=0.504 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
=.++|+|++|||||||++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3589999999999999999875
No 292
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.13 E-value=0.0003 Score=49.37 Aligned_cols=23 Identities=26% Similarity=0.615 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
.-.|+++|++||||||+.+.|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999998864
No 293
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.12 E-value=0.00025 Score=50.34 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998865
No 294
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.12 E-value=0.0003 Score=49.41 Aligned_cols=25 Identities=24% Similarity=0.512 Sum_probs=21.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
..++.|+|.|++||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999998875
No 295
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.12 E-value=0.00029 Score=48.45 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
.-++++|++|||||||+++|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 296
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.12 E-value=0.00029 Score=48.80 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=21.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
....|+++|++||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999988764
No 297
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.12 E-value=0.00033 Score=48.62 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
..|+|.|++||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 298
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.11 E-value=0.00028 Score=48.38 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
..|++.|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998763
No 299
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.11 E-value=0.00026 Score=51.94 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988643
No 300
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.11 E-value=0.00033 Score=48.66 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
+..|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999988864
No 301
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.11 E-value=0.00034 Score=49.15 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=21.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
+...|+++|++||||||+.+.|...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999888753
No 302
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.11 E-value=0.0003 Score=48.77 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 303
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.11 E-value=0.00035 Score=52.84 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
..++-|+|+|++|||||||++.|..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568899999999999999988764
No 304
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.10 E-value=0.0003 Score=51.10 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999998864
No 305
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.10 E-value=0.00028 Score=50.81 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988643
No 306
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.10 E-value=0.00029 Score=52.83 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
=.++|+|++|+|||||++.|.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 3689999999999999998875
No 307
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.09 E-value=0.00034 Score=52.74 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=22.7
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.....-|+|+|++|||||||++.|.+-
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 345678999999999999999988753
No 308
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.09 E-value=0.00028 Score=51.88 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999988864
No 309
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.09 E-value=0.0003 Score=51.22 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 310
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.09 E-value=0.00023 Score=50.47 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 311
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.08 E-value=0.015 Score=43.41 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=42.8
Q ss_pred EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCC
Q 028647 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV-VLGNKID 128 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D 128 (206)
+.+.|+|+|+.... ......+..+|.+++++..+ ..+...+..++..+..... ..+.+++ +|+|+.+
T Consensus 157 yD~ViiD~p~~~~~-~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~---~~~~~~~gvV~N~~~ 224 (307)
T 3end_A 157 TDVVIFDVLGDVVC-GGFAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSK---NYKVRLAGCVANRSR 224 (307)
T ss_dssp CSEEEEEECCSSCC-GGGGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTT---TCCCEEEEEEEESCS
T ss_pred CCEEEEeCCCccch-HHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhh---cCCCceEEEEEecCC
Confidence 56789999874322 12234567799999999764 4455666666655544321 2256655 9999998
No 312
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.08 E-value=0.00029 Score=51.12 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998864
No 313
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.08 E-value=0.00028 Score=48.62 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988753
No 314
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.07 E-value=0.00032 Score=51.21 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 315
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.07 E-value=0.00031 Score=51.26 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988643
No 316
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.07 E-value=0.00031 Score=51.48 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 317
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.06 E-value=0.00032 Score=49.93 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~ 30 (206)
+.+.|+|+|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998864
No 318
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.06 E-value=0.00039 Score=48.99 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
..|+|.|++||||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 67999999999999999998753
No 319
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.06 E-value=0.00044 Score=47.94 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
+..|++.|++||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 320
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.06 E-value=0.0005 Score=48.46 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.+...|+|+|++||||||+.+.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999998764
No 321
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.05 E-value=0.00038 Score=50.55 Aligned_cols=24 Identities=13% Similarity=0.315 Sum_probs=21.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~ 30 (206)
+...|+|+|+.|||||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998875
No 322
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.05 E-value=0.00033 Score=50.19 Aligned_cols=24 Identities=29% Similarity=0.634 Sum_probs=20.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~ 30 (206)
+...|+|.|++||||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
No 323
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.05 E-value=0.00035 Score=51.52 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 324
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.05 E-value=0.00046 Score=48.44 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=21.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
.....|+|.|++||||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998874
No 325
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.04 E-value=0.0002 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=15.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHh-cC
Q 028647 9 LKVIILGDSGVGKTSLMNQYV-NK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~-~~ 31 (206)
--++|+|++|||||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 358999999999999999998 54
No 326
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.04 E-value=0.0004 Score=47.16 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998875
No 327
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.04 E-value=0.00036 Score=51.22 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5799999999999999998864
No 328
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.03 E-value=0.00036 Score=50.51 Aligned_cols=20 Identities=35% Similarity=0.805 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 028647 10 KVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~ 29 (206)
-++++|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 329
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.03 E-value=0.00034 Score=51.72 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++|+|+.|||||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 330
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.03 E-value=0.00049 Score=51.34 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=21.9
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
...+..|+|.|++|||||||.+.|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34568899999999999999988754
No 331
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.03 E-value=0.0003 Score=50.26 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
+..|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 332
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.02 E-value=0.00039 Score=51.61 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988643
No 333
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.02 E-value=0.00036 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988653
No 334
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.01 E-value=0.00033 Score=52.57 Aligned_cols=23 Identities=39% Similarity=0.426 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|++|+|||||+|.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999998754
No 335
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.01 E-value=0.00044 Score=47.76 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 336
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.00 E-value=0.00058 Score=47.27 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
.+...|+++|.+||||||+.+.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3457799999999999999998865
No 337
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.00 E-value=0.00038 Score=51.29 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998764
No 338
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.99 E-value=0.00046 Score=51.42 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~ 30 (206)
.+.-|++.|++||||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457799999999999999999875
No 339
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.98 E-value=0.00047 Score=48.36 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...|+|.|++||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999865
No 340
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.98 E-value=0.00039 Score=49.67 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-++|+|++|||||||++.+...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999863
No 341
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.98 E-value=0.00047 Score=49.35 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
+.|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 342
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.97 E-value=0.00044 Score=47.37 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 343
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.96 E-value=0.0013 Score=46.26 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988753
No 344
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.96 E-value=0.0002 Score=49.13 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++|+|++|||||||++.|.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 345
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.96 E-value=0.00064 Score=48.47 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=19.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.--|+|+|+|||||+|....|...
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 345778999999999999888753
No 346
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.94 E-value=0.0005 Score=49.51 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=21.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
...+.|+|+|++||||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998864
No 347
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.94 E-value=0.00051 Score=50.52 Aligned_cols=23 Identities=48% Similarity=0.670 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988753
No 348
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.94 E-value=0.00053 Score=46.84 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
...++++|++|||||||+.+|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999875
No 349
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.94 E-value=0.00055 Score=48.13 Aligned_cols=25 Identities=40% Similarity=0.292 Sum_probs=21.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
.....|+|+|++||||||+++.|..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 350
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.93 E-value=0.00022 Score=49.74 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
...|++.|++||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 351
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.93 E-value=0.00049 Score=48.63 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 352
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.93 E-value=0.035 Score=43.88 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.9
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHh
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~ 29 (206)
..+..-|.|+|+.++|||+|+|.|+
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHH
Confidence 5678889999999999999999654
No 353
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.92 E-value=0.00041 Score=48.42 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=20.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~ 30 (206)
....|++.|++||||||+.+.|..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998875
No 354
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.91 E-value=0.00041 Score=50.66 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
..+..|+++|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999998865
No 355
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.90 E-value=0.00058 Score=47.39 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 356
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.89 E-value=0.00067 Score=51.06 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.....|+|+|++|||||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999988763
No 357
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.88 E-value=0.00068 Score=49.72 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998875
No 358
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.87 E-value=0.00056 Score=52.55 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
.++|+|++|||||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999998865
No 359
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.87 E-value=0.00056 Score=52.49 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-++++|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999988743
No 360
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.86 E-value=0.00047 Score=53.15 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.-+++|+|++|||||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998764
No 361
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.86 E-value=0.00059 Score=51.28 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=20.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~ 30 (206)
..-.++++|++||||||+++.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345789999999999999999863
No 362
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.86 E-value=0.00077 Score=47.91 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
++.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998875
No 363
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.85 E-value=0.00063 Score=52.30 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-++++|+.|||||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 3689999999999999988864
No 364
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.85 E-value=0.00063 Score=49.70 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
.|+|+|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 579999999999999998864
No 365
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.85 E-value=0.00074 Score=49.24 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=21.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
..++.|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999988865
No 366
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.85 E-value=0.00043 Score=47.64 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=16.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
+..|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999874
No 367
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.84 E-value=0.00052 Score=45.93 Aligned_cols=22 Identities=27% Similarity=0.679 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|++|+|||||++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998764
No 368
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.84 E-value=0.00063 Score=50.32 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028647 11 VIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999998863
No 369
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.84 E-value=0.00039 Score=52.28 Aligned_cols=22 Identities=23% Similarity=0.526 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++|+|+.|||||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5899999999999999988753
No 370
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.84 E-value=0.00069 Score=47.16 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-|++.|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 371
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.84 E-value=0.00066 Score=46.69 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
...|++.|++||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 35689999999999999998874
No 372
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.83 E-value=0.00059 Score=50.92 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999998764
No 373
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.83 E-value=0.00082 Score=49.90 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
..++.|+|.|++||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998863
No 374
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.82 E-value=0.0035 Score=47.83 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028647 11 VIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~ 30 (206)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998876
No 375
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.82 E-value=0.00058 Score=47.14 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999988865
No 376
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.82 E-value=0.00067 Score=49.51 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHh
Q 028647 9 LKVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~ 29 (206)
..|+|+|++||||||+.+.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999887
No 377
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.82 E-value=0.00068 Score=51.99 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-++++|+.|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999988643
No 378
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.81 E-value=0.0007 Score=50.82 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~ 30 (206)
+.-.++++|+.||||||+++.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999999864
No 379
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.81 E-value=0.0007 Score=52.01 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 3689999999999999998864
No 380
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.79 E-value=0.00075 Score=51.91 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-++++|+.|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 3689999999999999998864
No 381
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.79 E-value=0.00095 Score=45.86 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
...|+++|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999998875
No 382
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.79 E-value=0.00075 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 36899999999999999988643
No 383
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.76 E-value=0.00095 Score=45.32 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
-+|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998864
No 384
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.76 E-value=0.0008 Score=52.05 Aligned_cols=22 Identities=18% Similarity=0.504 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
=.++|+|++||||||+++.+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999875
No 385
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.76 E-value=0.00074 Score=51.35 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++|+|++|||||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998864
No 386
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.76 E-value=0.00081 Score=48.98 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998864
No 387
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.76 E-value=0.00087 Score=45.64 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998865
No 388
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.75 E-value=0.0008 Score=51.97 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 36899999999999999988643
No 389
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.75 E-value=0.00082 Score=51.87 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-++++|+.|||||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4689999999999999998864
No 390
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.75 E-value=0.00098 Score=45.82 Aligned_cols=24 Identities=25% Similarity=0.605 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988753
No 391
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.75 E-value=0.00091 Score=48.20 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
++.|++.|++||||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998864
No 392
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.74 E-value=0.00078 Score=51.90 Aligned_cols=23 Identities=30% Similarity=0.679 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
-.++|+|++|||||||++.+.+-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999999864
No 393
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.74 E-value=0.0003 Score=49.80 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 394
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.73 E-value=0.00097 Score=47.87 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=20.4
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
.--..++++|+|+|||||||+...|..
T Consensus 4 ~~~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 4 HHHHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -----CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccccceeeECCCCCCHHHHHHHHHH
Confidence 334568999999999999999998864
No 395
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.72 E-value=0.0013 Score=46.03 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
..+.|+++|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4688999999999999999988753
No 396
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.68 E-value=0.00094 Score=52.40 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++|+|++||||||+++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998864
No 397
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.66 E-value=0.001 Score=47.76 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=22.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.+..-|+|.|+.||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44567999999999999999988764
No 398
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.64 E-value=0.0014 Score=47.08 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...-|++.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998764
No 399
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.63 E-value=0.00067 Score=51.89 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-++++|+.|||||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4689999999999999998864
No 400
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.63 E-value=0.0011 Score=47.23 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999874
No 401
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.62 E-value=0.0014 Score=46.33 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=20.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~ 30 (206)
+...|+++|.+||||||+.+.|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998865
No 402
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.62 E-value=0.0012 Score=50.80 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~ 30 (206)
+.-.++++|+.||||||+++.|.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345789999999999999999864
No 403
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.61 E-value=0.0011 Score=50.43 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
-.+++.|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999998764
No 404
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.61 E-value=0.0011 Score=51.51 Aligned_cols=21 Identities=33% Similarity=0.782 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
.++++|++|||||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 478999999999999998875
No 405
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.61 E-value=0.0012 Score=48.83 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999998864
No 406
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.60 E-value=0.0052 Score=40.57 Aligned_cols=24 Identities=13% Similarity=0.263 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...|++.|++|+|||++.+.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 356999999999999999877653
No 407
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.58 E-value=0.0012 Score=53.27 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
-.++|+|++||||||+++.+.+--
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999998643
No 408
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.56 E-value=0.0013 Score=47.93 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
-.|+++|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 409
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.55 E-value=0.0011 Score=45.35 Aligned_cols=24 Identities=42% Similarity=0.620 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999888753
No 410
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.55 E-value=0.0013 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
.-.++|+|+.|||||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 45789999999999999999864
No 411
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.54 E-value=0.0016 Score=48.61 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 412
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.51 E-value=0.00066 Score=52.07 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-++++|+.|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999988643
No 413
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.48 E-value=0.0015 Score=48.80 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-++|+|++|+|||||+..+...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999988753
No 414
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.47 E-value=0.0018 Score=47.23 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
+..+++.|++|+||||+++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999998753
No 415
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.47 E-value=0.0018 Score=46.33 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
.-.+++.|++|+||||+++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998875
No 416
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.46 E-value=0.011 Score=44.78 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=21.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
....+++.|++|+|||++++.+...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3457999999999999999998654
No 417
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.45 E-value=0.0018 Score=46.67 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=21.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
.....|+|+|++||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988864
No 418
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.0014 Score=52.07 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
-.++|+|+.|||||||++.|.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999998753
No 419
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.44 E-value=0.0018 Score=45.84 Aligned_cols=21 Identities=29% Similarity=0.180 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999986
No 420
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.43 E-value=0.0021 Score=45.02 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999888753
No 421
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.42 E-value=0.0019 Score=49.47 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
+++++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 422
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.41 E-value=0.0019 Score=46.43 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999998863
No 423
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.37 E-value=0.0021 Score=44.13 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999998754
No 424
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.36 E-value=0.002 Score=48.70 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
--++|+|+.|||||||++.+.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 45689999999999999999865
No 425
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.35 E-value=0.002 Score=49.84 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
.-.++++|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999999885
No 426
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.35 E-value=0.0018 Score=45.54 Aligned_cols=21 Identities=14% Similarity=0.387 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
.+++.||||+||||++..+..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999888875
No 427
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.32 E-value=0.0032 Score=47.11 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.-.+++.|++|+|||++++.+...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 357999999999999999988753
No 428
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.30 E-value=0.0026 Score=44.56 Aligned_cols=24 Identities=46% Similarity=0.684 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
..|+|+|++|+|||||...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998654
No 429
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.28 E-value=0.0023 Score=47.75 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=20.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.+.-+++.|+||+|||+|.+.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456788899999999999988764
No 430
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.24 E-value=0.0025 Score=50.85 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
.++|+|+.|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998864
No 431
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.24 E-value=0.0028 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999988743
No 432
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.23 E-value=0.0031 Score=44.22 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 433
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.20 E-value=0.0029 Score=45.10 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
.++|.|++|+||||+++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 434
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.20 E-value=0.0028 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
+++++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999988753
No 435
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.19 E-value=0.0031 Score=45.91 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
+..+++.|++|+|||++++.+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998763
No 436
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.18 E-value=0.0027 Score=51.54 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-++++|+.|||||||++.+.+-.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 46999999999999999988743
No 437
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.17 E-value=0.0033 Score=41.60 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...|++.|++|+|||++.+.+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999988764
No 438
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.17 E-value=0.0042 Score=45.62 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=22.9
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
......+++.|++|+|||++++.+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 345678999999999999999998764
No 439
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.16 E-value=0.0035 Score=49.21 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=21.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.+.-|+++|++||||||+.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999998763
No 440
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.16 E-value=0.0032 Score=46.82 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
+.-.+++.|++|+|||++++.+...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3467999999999999999998763
No 441
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.15 E-value=0.0029 Score=46.78 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999988874
No 442
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.003 Score=51.99 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|+|||||++.+.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 57999999999999999988643
No 443
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.012 Score=42.09 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
+=|++-|+++.||++|++++++.
T Consensus 30 ilvl~~~~~~~~~~~~~~~lf~~ 52 (233)
T 3uc9_A 30 ILVLSDHPHNFLKTQFLQDLFHC 52 (233)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHCC
T ss_pred eEEEecCcccccHHHHHHHHhcc
Confidence 33444499999999999999976
No 444
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.15 E-value=0.0029 Score=51.89 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5899999999999999988764
No 445
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.14 E-value=0.003 Score=46.69 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=21.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
....+++.|++|+|||++++.+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999998764
No 446
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.13 E-value=0.0041 Score=47.00 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 447
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.13 E-value=0.0034 Score=41.88 Aligned_cols=19 Identities=37% Similarity=0.786 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028647 11 VIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~ 29 (206)
.+|+|+.|+||||++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3799999999999998865
No 448
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.13 E-value=0.0023 Score=46.89 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=21.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.+...|+|.|.+||||||+.+.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999888754
No 449
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.12 E-value=0.0044 Score=46.49 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
+.-|+|+||+|||||||...|...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 456889999999999999998753
No 450
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.11 E-value=0.0036 Score=46.79 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=20.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
.....+++.|++|+|||++++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999986654
No 451
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.11 E-value=0.0034 Score=46.93 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=19.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHh
Q 028647 8 LLKVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~ 29 (206)
.-.++++|++|+||||++..|.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999998875
No 452
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.09 E-value=0.0034 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999988764
No 453
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.05 E-value=0.0043 Score=42.75 Aligned_cols=21 Identities=14% Similarity=0.425 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028647 11 VIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
++|+|.++||||||..+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999854
No 454
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.05 E-value=0.0044 Score=46.53 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=20.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~ 30 (206)
+.-.|+++|++|+||||++..|..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 345789999999999999988763
No 455
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.04 E-value=0.0036 Score=46.83 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.-.+++.|++|+|||+|++.+...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346899999999999999998864
No 456
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.02 E-value=0.003 Score=45.33 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=17.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~ 30 (206)
+..-|++.|++||||||+++.|..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 457
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.01 E-value=0.0046 Score=44.62 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
+.-|++.|..||||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999998754
No 458
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.00 E-value=0.0039 Score=51.29 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|+|||||++.+.+-.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 57999999999999999988743
No 459
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.99 E-value=0.0041 Score=44.74 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028647 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
-+++.|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877753
No 460
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.99 E-value=0.0039 Score=47.07 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
-.+++.|++|+|||||++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999988753
No 461
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.98 E-value=0.0038 Score=44.22 Aligned_cols=22 Identities=14% Similarity=0.447 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
+.|++.|++||||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999988865
No 462
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.98 E-value=0.0041 Score=47.29 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 028647 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
..|+|.|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999988875
No 463
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.97 E-value=0.003 Score=51.92 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988764
No 464
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.96 E-value=0.0018 Score=48.23 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=17.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
.+.|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998864
No 465
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.95 E-value=0.0033 Score=51.70 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999988764
No 466
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.95 E-value=0.004 Score=50.50 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998743
No 467
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.91 E-value=0.006 Score=46.66 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=19.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
..+|+++|++|+||||+.+.|..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 46799999999999999987653
No 468
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.90 E-value=0.0052 Score=46.16 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-|+|+||+|||||||...|...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 5789999999999999999754
No 469
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.89 E-value=0.0051 Score=49.95 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++|+|+.|+|||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998754
No 470
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.88 E-value=0.0045 Score=47.55 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
.-.++|.|++|+|||||++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999875
No 471
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.87 E-value=0.005 Score=47.45 Aligned_cols=19 Identities=32% Similarity=0.615 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028647 11 VIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~ 29 (206)
.+|+|+.|||||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4699999999999999876
No 472
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.86 E-value=0.081 Score=39.70 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028647 11 VIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
+++-|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455566999999999998754
No 473
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.86 E-value=0.0067 Score=46.05 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
..|+|+|++|||||||...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998864
No 474
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.85 E-value=0.0053 Score=50.53 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++|+|+.|+|||||++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 475
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.85 E-value=0.0029 Score=51.86 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5799999999999999877753
No 476
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.83 E-value=0.0048 Score=47.26 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
--+.|+|++|+|||||+..+...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999998864
No 477
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.83 E-value=0.0055 Score=47.20 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++|.|++|+||||+++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 478
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.82 E-value=0.004 Score=50.65 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=21.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
....|+++|++|||||||.+.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4567999999999999999988764
No 479
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.82 E-value=0.0053 Score=45.74 Aligned_cols=24 Identities=25% Similarity=0.559 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...+++.|++|+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988753
No 480
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.81 E-value=0.0067 Score=41.43 Aligned_cols=24 Identities=25% Similarity=0.588 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
.-|++.|++|+||||+...|....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 468999999999999999988743
No 481
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.0054 Score=50.48 Aligned_cols=22 Identities=27% Similarity=0.674 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028647 11 VIILGDSGVGKTSLMNQYVNKK 32 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~ 32 (206)
++++|+.|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999998754
No 482
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.78 E-value=0.0039 Score=51.21 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999987753
No 483
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.76 E-value=0.0055 Score=46.61 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988764
No 484
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.76 E-value=0.0062 Score=46.01 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
+...+++.|+||+|||+|++.+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3467999999999999999998754
No 485
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.74 E-value=0.0058 Score=46.22 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=21.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
+.-.|++.|+||+|||+|++.+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3457999999999999999998864
No 486
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.68 E-value=0.0069 Score=42.98 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
..-|++.|++||||||+++.|..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999998864
No 487
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.007 Score=47.64 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
++-.|++.||||+|||+|++.+.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 4568999999999999999998864
No 488
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.0072 Score=47.50 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=21.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
++--|++.||||+|||+|++.+.+.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999998864
No 489
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.59 E-value=0.0079 Score=45.19 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988765
No 490
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.58 E-value=0.0062 Score=46.82 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=21.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
..-.++|.|++|+||||+++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999988753
No 491
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.57 E-value=0.04 Score=38.32 Aligned_cols=83 Identities=11% Similarity=-0.006 Sum_probs=51.8
Q ss_pred EEEEEEeCCChhhhccchhhhhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCccc
Q 028647 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV 136 (206)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 136 (206)
+.+.++|+|+.. .......+..+|.+++++..+... ......+..+..... . .++.++.+|+|+.|...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~-~-~~~~~~~vv~N~~~~~~----- 144 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQA-Y-SRKVEARFLITRKIEMA----- 144 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSC-G-GGCCEEEEEECSBCTTE-----
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHH-h-CCCCcEEEEEeccCCCc-----
Confidence 457899999865 344556677799999999876543 555555555543321 1 22567899999999432
Q ss_pred ccHHHHHHHHHhcC
Q 028647 137 VSEKKARAWCASKG 150 (206)
Q Consensus 137 ~~~~~~~~~~~~~~ 150 (206)
...++..++...++
T Consensus 145 ~~~~~~~~~l~~~~ 158 (206)
T 4dzz_A 145 TMLNVLKESIKDTG 158 (206)
T ss_dssp EEEHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHcC
Confidence 12334445555554
No 492
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.56 E-value=0.0074 Score=45.89 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028647 10 KVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.+++.|++|+||||+++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988754
No 493
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.55 E-value=0.0069 Score=49.00 Aligned_cols=19 Identities=37% Similarity=0.646 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028647 11 VIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~ 29 (206)
++|+|++|||||||++.|+
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 494
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.0079 Score=47.39 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
++-.|++.||||+|||+|++.+...
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999998864
No 495
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.55 E-value=0.01 Score=42.44 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=21.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
....-|++.|.+||||||+++.|..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457799999999999999998864
No 496
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.54 E-value=0.0033 Score=46.04 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
..+++.|++|+|||+|++.+...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 34889999999999999998753
No 497
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.53 E-value=0.0095 Score=47.90 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=23.7
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 4 RRRTLLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
+.+..+.|.++|.+||||||+.+.|...
T Consensus 391 ~~~~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 391 RPKQGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp GGGCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred ccccceEEEecccCCCCHHHHHHHHHHH
Confidence 4456689999999999999999888754
No 498
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.50 E-value=0.011 Score=48.43 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=22.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhc
Q 028647 5 RRTLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
.+..+.|.+.|.+||||||+.+.|..
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHH
Confidence 44568899999999999999988865
No 499
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.49 E-value=0.0083 Score=45.98 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 028647 9 LKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
-.+++.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988753
No 500
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.48 E-value=0.0077 Score=48.01 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 028647 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.-+++++|+||+|||++++.+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999887653
Done!