Query 028649
Match_columns 206
No_of_seqs 211 out of 1219
Neff 5.0
Searched_HMMs 29240
Date Tue Mar 26 00:56:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_K 60S ribosomal protein L 100.0 4.3E-81 1.5E-85 532.0 16.5 206 1-206 1-206 (206)
2 4a17_I RPL13A, 60S ribosomal p 100.0 3.9E-77 1.3E-81 505.2 18.2 198 7-206 1-198 (198)
3 4b6a_O 60S ribosomal protein L 100.0 2.7E-73 9.1E-78 481.9 21.3 197 8-206 3-199 (199)
4 2zkr_j 60S ribosomal protein L 100.0 2.7E-75 9.4E-80 495.5 8.2 199 8-206 3-201 (203)
5 3jyw_M 60S ribosomal protein L 100.0 1.8E-60 6.3E-65 397.7 7.2 151 12-162 1-151 (178)
6 1j3a_A 50S ribosomal protein L 100.0 1.5E-58 5.3E-63 374.2 11.4 136 11-154 1-142 (142)
7 1vq8_J 50S ribosomal protein L 100.0 1.9E-57 6.6E-62 368.8 11.2 139 5-154 3-143 (145)
8 3r8s_J 50S ribosomal protein L 100.0 1.6E-47 5.6E-52 309.5 7.3 118 1-129 5-140 (142)
9 3v2d_N 50S ribosomal protein L 100.0 6.4E-47 2.2E-51 305.5 6.9 114 6-130 8-139 (140)
10 2ftc_H L13MT, MRP-L13, 39S rib 100.0 9.5E-46 3.3E-50 301.0 8.0 118 2-130 6-144 (148)
11 3f1f_N 50S ribosomal protein L 100.0 5.2E-46 1.8E-50 306.2 4.8 114 6-130 31-162 (163)
12 2zjr_G 50S ribosomal protein L 100.0 5.3E-45 1.8E-49 303.0 9.1 112 7-125 37-166 (174)
13 3bbo_L Ribosomal protein L13; 100.0 6.5E-45 2.2E-49 315.4 4.0 126 2-134 102-248 (250)
14 1wi9_A Protein C20ORF116 homol 69.0 4.1 0.00014 29.0 3.2 28 137-164 18-45 (72)
15 3koj_A Uncharacterized protein 59.9 4.8 0.00017 30.2 2.3 23 20-42 59-81 (108)
16 4dam_A Single-stranded DNA-bin 46.2 11 0.00037 28.9 2.3 23 20-42 69-91 (128)
17 3vdy_A SSB, single-stranded DN 43.6 13 0.00044 27.4 2.3 23 20-42 56-78 (116)
18 3ulp_A Single-strand binding p 41.2 14 0.00047 27.7 2.2 23 20-42 60-83 (124)
19 1z9f_A Single-strand binding p 39.9 16 0.00056 28.7 2.6 23 20-42 69-91 (153)
20 2vw9_A Single-stranded DNA bin 39.8 17 0.00058 27.7 2.6 23 20-42 55-77 (134)
21 3stb_C RNA-editing complex pro 37.9 33 0.0011 27.3 4.1 32 8-42 84-115 (148)
22 3afp_A Single-stranded DNA-bin 36.8 19 0.00066 28.6 2.6 23 20-42 59-81 (168)
23 1qvc_A Single stranded DNA bin 36.2 21 0.0007 27.6 2.6 23 20-42 59-81 (145)
24 1eqq_A Single stranded DNA bin 36.1 17 0.00059 29.2 2.2 22 20-41 60-81 (178)
25 3ull_A DNA binding protein; DN 34.0 23 0.00079 26.8 2.5 22 21-42 74-96 (132)
26 3tqy_A Single-stranded DNA-bin 33.1 22 0.00076 27.9 2.3 22 21-42 63-84 (158)
27 3k7u_C MP18 RNA editing comple 31.2 24 0.00084 27.7 2.2 23 20-42 58-81 (148)
28 3i71_A Ethanolamine utilizatio 28.6 39 0.0013 23.3 2.6 30 134-163 12-41 (68)
29 3lgj_A Single-stranded DNA-bin 28.6 28 0.00096 27.8 2.2 22 21-42 78-100 (169)
30 3eiv_A Single-stranded DNA-bin 28.5 32 0.0011 28.5 2.6 23 20-42 59-81 (199)
31 3k81_C MP18 RNA editing comple 27.4 29 0.00098 28.0 2.0 28 10-41 68-96 (164)
32 1txy_A Primosomal replication 26.6 16 0.00054 26.6 0.4 23 20-42 54-76 (104)
33 3fwz_A Inner membrane protein 26.6 94 0.0032 22.6 4.7 36 4-44 3-39 (140)
34 1q7s_A BIT1, protein CGI-147; 23.3 1.1E+02 0.0039 22.7 4.6 25 8-32 3-28 (117)
35 1olm_A SEC14-like protein 2; l 22.5 73 0.0025 27.8 4.0 69 35-110 147-220 (403)
36 1nd9_A Translation initiation 20.0 85 0.0029 18.8 2.8 24 141-164 3-26 (49)
No 1
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=100.00 E-value=4.3e-81 Score=531.98 Aligned_cols=206 Identities=85% Similarity=1.372 Sum_probs=204.0
Q ss_pred CCCCCcccceEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEeccceeecCccchhhhHhhhhhcccccccCCCCCccccC
Q 028649 1 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRA 80 (206)
Q Consensus 1 ~~~~~~~~~~w~VIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVNae~I~isG~k~r~k~~y~~~l~kr~~~~P~~g~~~~r~ 80 (206)
|||+++|+++|+||||+||+||||||.||+.|+|||+|||||||+|+|||+++++|.||+.|+++++++||..||+|+++
T Consensus 1 ~~~~~~f~r~W~VIDA~g~~LGRLAS~VAk~Ll~Gd~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~np~~~~~~~r~ 80 (206)
T 3iz5_K 1 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRA 80 (206)
T ss_dssp CCCSSSCCSSCCEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHHHHTTCSCSSSCSCCCCS
T ss_pred CccccccceeEEEEeCCCCchHHHHHHHHHHHhCCCEEEEEcCcccCcCCchHhhhhheeeecceeecCCCcccchhhcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred ccHHHHHHHhccCCCCChhhHHHhhcCccccCCCCChhhhccccCCchhhhhhcCCCCCeeehhhhhhhhCcchHHHHHH
Q 028649 81 PAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRE 160 (206)
Q Consensus 81 P~~I~~raVrGMLP~K~~~Gr~al~rLkvy~G~p~p~~~~k~~vvP~al~v~~l~p~rk~~~lg~ls~~vGWk~~~~v~~ 160 (206)
|++||++||+|||||||++|+.+|+||+||+|+||||++|++++||+||++.+|+|+||||+|||||++|||+|++||++
T Consensus 81 P~~Il~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqk~~vvP~al~v~~l~p~rk~~~lg~ls~~~Gwk~~~vv~~ 160 (206)
T 3iz5_K 81 PAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKEVGWNYADTIRE 160 (206)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHTTEEEESSCCTTCCSCCBCCTTTBCBTTBCSSSSCEEEHHHHGGGTCTTHHHHHHH
T ss_pred HHHHHHHHHhccCCCCChhHHHHHhCCEEeCCCCCChhhcccccCchHHhhhhcCCCCCeEEHHHHHHHHCchHHHHHHH
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhccCCC
Q 028649 161 LEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 206 (206)
Q Consensus 161 le~krk~k~~~~~~~k~~~~~~~~~a~~~~~~~~~~~~~~l~~~g~ 206 (206)
||++||+++++||++|+++++++++|++++++++++++++|+++||
T Consensus 161 le~krk~k~~~~y~~k~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y 206 (206)
T 3iz5_K 161 LEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIKY 206 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSTTHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999998
No 2
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=100.00 E-value=3.9e-77 Score=505.21 Aligned_cols=198 Identities=50% Similarity=0.827 Sum_probs=193.0
Q ss_pred ccceEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEeccceeecCccchhhhHhhhhhcccccccCCCCCccccCccHHHH
Q 028649 7 ICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFW 86 (206)
Q Consensus 7 ~~~~w~VIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVNae~I~isG~k~r~k~~y~~~l~kr~~~~P~~g~~~~r~P~~I~~ 86 (206)
++++|+||||+||+||||||.||+.|+|||+|||||||+|+|||+++++|.||+.|++++++++|..||+|+++|++||+
T Consensus 1 ~~~~w~VIDA~g~~LGRLAs~VAk~L~~GD~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~~~~~g~~~~r~P~rIi~ 80 (198)
T 4a17_I 1 MFDKLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNPRRGVQHFRAPSRIFW 80 (198)
T ss_dssp CCSSCEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHHTCCCSSCTTSSCCCCCSHHHHHH
T ss_pred CCccEEEEeCCCCchHHHHHHHHHHHhCCCEEEEEcCccccccCchhhheeeeeeccccccCCCCccccccccCHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCChhhHHHhhcCccccCCCCChhhhccccCCchhhhhhcCCCCCeeehhhhhhhhCcchHHHHHHHHHHHH
Q 028649 87 RTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRK 166 (206)
Q Consensus 87 raVrGMLP~K~~~Gr~al~rLkvy~G~p~p~~~~k~~vvP~al~v~~l~p~rk~~~lg~ls~~vGWk~~~~v~~le~krk 166 (206)
+||+|||||||++|+.+|+||+||+|+||||++|++++||+|+++.+|+|+||||+|||||++|||+|++||++||++||
T Consensus 81 ~AVrGMLPkK~~lGr~~l~rLkVy~G~~hph~aqk~~vvp~al~v~rl~~~rk~~~lg~ls~~~Gwk~~~vv~~le~krk 160 (198)
T 4a17_I 81 RAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDALKVQRLRNSRPVCKLGDLSASVGWGKQTLIEKLEEKRR 160 (198)
T ss_dssp HHHHTTTTTTSHHHHHHHHHCEECSSCCGGGTTSCCBCCGGGBHHHHSCTTSCEEEHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHhccCCCCChhHHHHHhCcEEecCCCCChhhccccccchHhhhhhcCCCCCeEEHHHHHHHhCchHHHHHHHHHHHHH
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhccCCC
Q 028649 167 ERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 206 (206)
Q Consensus 167 ~k~~~~~~~k~~~~~~~~~a~~~~~~~~~~~~~~l~~~g~ 206 (206)
+++++||++|+++++++++|+++++++ +++++|++|||
T Consensus 161 ~k~~~~y~~k~~~~~~~~~a~~~~~~~--~~~~~l~~~g~ 198 (198)
T 4a17_I 161 ARAKTYHDKKVKQADARKKELAAPALK--AIKDKLAQFGY 198 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSHHHH--HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHcCC
Confidence 999999999999999999999988775 59999999998
No 3
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=100.00 E-value=2.7e-73 Score=481.92 Aligned_cols=197 Identities=51% Similarity=0.874 Sum_probs=187.7
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEeccceeecCccchhhhHhhhhhcccccccCCCCCccccCccHHHHH
Q 028649 8 CAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWR 87 (206)
Q Consensus 8 ~~~w~VIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVNae~I~isG~k~r~k~~y~~~l~kr~~~~P~~g~~~~r~P~~I~~r 87 (206)
+.+|+||||+||+||||||.||+.|+.||+|||||||+|+|||+++++|.||+.+.++.+..+|..||+|+++|++||++
T Consensus 3 ~~~~vVIDA~g~vLGRLAS~VAk~L~~Gd~VVVVNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~~~~r~P~~il~~ 82 (199)
T 4b6a_O 3 SQPVVVIDAKDHLLGRLASTIAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYK 82 (199)
T ss_dssp CCSEEEEECTTBBHHHHHHHHHHHHHTTCEEEEECGGGCEEESCHHHHHHHHHHHHTCCCTTCTTTSCCCCCSHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCEEEEEEchheEEeCcHHHHHHHhhccccccccccCCHHHHhhcCcHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999777777777777799999999999999
Q ss_pred HHhccCCCCChhhHHHhhcCccccCCCCChhhhccccCCchhhhhhcCCCCCeeehhhhhhhhCcchHHHHHHHHHHHHH
Q 028649 88 TVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKE 167 (206)
Q Consensus 88 aVrGMLP~K~~~Gr~al~rLkvy~G~p~p~~~~k~~vvP~al~v~~l~p~rk~~~lg~ls~~vGWk~~~~v~~le~krk~ 167 (206)
||||||||||++|+.+|+||+||+|+||||++|+++++|+|+++.+|+|+||||+|||||++|||||+|+|++||++||+
T Consensus 83 aVrGMLP~K~~lGr~~l~rLkVy~G~~hph~aqk~~vvp~Al~~~~lkp~~Ky~~lg~ls~~~Gwk~~~vv~~le~krk~ 162 (199)
T 4b6a_O 83 AIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKV 162 (199)
T ss_dssp HHHTTSCTTSHHHHHHHHTEEECSSCCSGGGGSCCBBCGGGBHHHHSCTTCCEEEHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHhccCCCCChhhhHHHhccEEeCCCCCCcccCCCEecchHHHhhccCCCCCeEEhhhhHHHhCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhccCCC
Q 028649 168 RSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 206 (206)
Q Consensus 168 k~~~~~~~k~~~~~~~~~a~~~~~~~~~~~~~~l~~~g~ 206 (206)
++++||++|+++++++++|.++++. ++++++|+++||
T Consensus 163 k~~~~~~~k~~~~k~~~~a~~~~~~--~~~~~~l~~~gy 199 (199)
T 4b6a_O 163 RSAEYYAKKRAFTKKVASANATAAE--SDVAKQLAALGY 199 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHcCC
Confidence 9999999999999999998877653 568999999998
No 4
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.7e-75 Score=495.49 Aligned_cols=199 Identities=57% Similarity=0.969 Sum_probs=133.5
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEeccceeecCccchhhhHhhhhhcccccccCCCCCccccCccHHHHH
Q 028649 8 CAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWR 87 (206)
Q Consensus 8 ~~~w~VIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVNae~I~isG~k~r~k~~y~~~l~kr~~~~P~~g~~~~r~P~~I~~r 87 (206)
.++|+||||+||+||||||+||+.||.||+|||||||+|+|||+++++|.||.+|+++++++||..|++|+++|++|||+
T Consensus 3 ~r~w~VIDA~g~~LGRLAS~VAk~lL~G~~VVVINaeki~iTG~k~~~K~yy~~h~~~~~~~n~~~G~~~~r~P~~I~~~ 82 (203)
T 2zkr_j 3 EVQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSRGPYDFRAPSRIFWR 82 (203)
T ss_dssp ----CEEECTTBBHHHHHHHHHHHHHHTCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSSCCCCCCSHHHHHHH
T ss_pred CccEEEEeCCCCchHHHHHHHHHHHhCCCeEEEEchHHeecCchHHHHHHHHHHHHhhcccCCCCCCccccCChHHHHHH
Confidence 78999999999999999999999999999999999999999999999999998899999999998899999999999999
Q ss_pred HHhccCCCCChhhHHHhhcCccccCCCCChhhhccccCCchhhhhhcCCCCCeeehhhhhhhhCcchHHHHHHHHHHHHH
Q 028649 88 TVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKE 167 (206)
Q Consensus 88 aVrGMLP~K~~~Gr~al~rLkvy~G~p~p~~~~k~~vvP~al~v~~l~p~rk~~~lg~ls~~vGWk~~~~v~~le~krk~ 167 (206)
||+|||||||++|+.+|+||+||+|+||||++|+++++|+|+++.+++|+++||+|||||++|||+|+|||++||++||+
T Consensus 83 AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqkp~vvp~a~~v~~~~~~~ky~~lg~ls~~~Gwk~~~vv~~le~kRk~ 162 (203)
T 2zkr_j 83 TVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKE 162 (203)
T ss_dssp HHHHHSCTTSHHHHHHHHTEEECSCSSCSSSSCCBCCGGGBCCSSSSSCCSCEEEHHHHC--------------------
T ss_pred HHHhhCCCCChhHHHHHhCcEEeCCCCCchhhcCCcccchhhhhhhcCCCCceEEHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhccCCC
Q 028649 168 RSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 206 (206)
Q Consensus 168 k~~~~~~~k~~~~~~~~~a~~~~~~~~~~~~~~l~~~g~ 206 (206)
++++||++|+++++++++|++++++++++++++|+++||
T Consensus 163 k~~~~y~~kk~~~~~~~~a~~~~~~~~~~~~~~l~~~g~ 201 (203)
T 2zkr_j 163 KAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGL 201 (203)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHcCC
Confidence 999999999999999999999999999999999999998
No 5
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=100.00 E-value=1.8e-60 Score=397.71 Aligned_cols=151 Identities=54% Similarity=0.974 Sum_probs=147.0
Q ss_pred EEEeCCCCchhhHHHHHHHHHhCCCEEEEEeccceeecCccchhhhHhhhhhcccccccCCCCCccccCccHHHHHHHhc
Q 028649 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRG 91 (206)
Q Consensus 12 ~VIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVNae~I~isG~k~r~k~~y~~~l~kr~~~~P~~g~~~~r~P~~I~~raVrG 91 (206)
+||||+||+||||||+||++|+|||+|||||||+|+|||++|++|+||+.|++++++++|..|++|+++|++|||++|+|
T Consensus 1 ~VIDA~g~~LGRLAs~VAk~L~~GD~VVVINaeki~iTG~K~~~K~yy~h~l~~~~~~~~~~~~~~~r~P~~Il~~AVrG 80 (178)
T 3jyw_M 1 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRG 80 (178)
T ss_dssp CCCCCCSSCSHHHHHHHHHHHTTTCCCCEECSTTSCCCCCSSHHHHSCSSSSSSTTSCCCSSSCCCCSSTTTHHHHHTTS
T ss_pred CEEcCCCCchHHHHHHHHHHHhCCCEEEEEeCeeeEEcCchHhhEhheeccCcccccCCccccccccCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred cCCCCChhhHHHhhcCccccCCCCChhhhccccCCchhhhhhcCCCCCeeehhhhhhhhCcchHHHHHHHH
Q 028649 92 MIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELE 162 (206)
Q Consensus 92 MLP~K~~~Gr~al~rLkvy~G~p~p~~~~k~~vvP~al~v~~l~p~rk~~~lg~ls~~vGWk~~~~v~~le 162 (206)
||||||++|+.+|+||+||+|+||||+.|+++++|+++++.+++|+||||+|||||+++||+|+++|+.--
T Consensus 81 MLP~K~~lGr~~l~rLkVy~G~~hp~~aqk~~vvp~Alrv~RLkp~rKy~tLGels~~vGwk~~~~~~~~~ 151 (178)
T 3jyw_M 81 MVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKAAAAAAAAA 151 (178)
T ss_dssp SSCSSSHHHHHHHHHCCEESSCCCCSCCSCSSSCCSSCCCCCSSSCSCCCCHHHHSSTTTCCCHHHHHTHH
T ss_pred HhhcccHhHHHHHhCCeeeCCCCCchhhcccccCchHhhhhccCCCCceEEcchhhhhcCCcchhhHHHHH
Confidence 99988999999999999999999999999999999999999999999999999999999999999996543
No 6
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=100.00 E-value=1.5e-58 Score=374.16 Aligned_cols=136 Identities=37% Similarity=0.535 Sum_probs=124.9
Q ss_pred EEEEeCCCCchhhHHHHHHHHHhCCCEEEEEeccceeecCccchhhhHhhhhhcccccccCCC------CCccccCccHH
Q 028649 11 RVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH------GPIHFRAPAKI 84 (206)
Q Consensus 11 w~VIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVNae~I~isG~k~r~k~~y~~~l~kr~~~~P~~------g~~~~r~P~~I 84 (206)
|+||||+||+||||||+||+.|+|||+|||||||+|+|||+++++|.||+ |++|||+ +++++++|++|
T Consensus 1 W~viDA~g~~LGRLAs~vAk~L~~Gd~VVViNaeki~iTG~k~~~K~yy~------h~g~~gg~~~~~~~~~~~r~P~~i 74 (142)
T 1j3a_A 1 MRIINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYK------QRTGLRTLTNPRRGPFYPKRSDEI 74 (142)
T ss_dssp CEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHH------HHC-------------CCCSHHHH
T ss_pred CEEEeCCCCchHHHHHHHHHHHhcCCEEEEEeCeeeEecccHHhheeeee------ecCCCCCCcCCccCcccccCHHHH
Confidence 99999999999999999999999999999999999999999999999998 6777765 89999999999
Q ss_pred HHHHHhccCCCCChhhHHHhhcCccccCCCCChhhhccccCCchhhhhhcCCCCCeeehhhhhhhhCcch
Q 028649 85 FWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNY 154 (206)
Q Consensus 85 ~~raVrGMLP~K~~~Gr~al~rLkvy~G~p~p~~~~k~~vvP~al~v~~l~p~rk~~~lg~ls~~vGWk~ 154 (206)
|++||+|||||||++|+++|+||+||+|+||||++|+++++|.|+. .+++ ++|||+|||||++|||||
T Consensus 75 i~~aVrGMLP~k~~lgr~~l~rLkVy~G~~hp~~aqkp~~~~~a~~-~~~~-~~k~~~lg~ls~~~Gwk~ 142 (142)
T 1j3a_A 75 VRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHV-SRLS-RPKYVTVGEVAKFLGGKF 142 (142)
T ss_dssp HHHHHHTTTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCCGGGBG-GGSS-SCCEEEHHHHHHHHTCCC
T ss_pred HHHHHHhhccCCCHHHHHHHhCcEEeCCCCCCccccCcEeccHHHh-hccC-CCCeEEHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999986 6774 899999999999999997
No 7
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=100.00 E-value=1.9e-57 Score=368.80 Aligned_cols=139 Identities=32% Similarity=0.486 Sum_probs=131.7
Q ss_pred CcccceEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEeccceeecCccchhhhHhhhhhcccccccCCC--CCccccCcc
Q 028649 5 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH--GPIHFRAPA 82 (206)
Q Consensus 5 ~~~~~~w~VIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVNae~I~isG~k~r~k~~y~~~l~kr~~~~P~~--g~~~~r~P~ 82 (206)
.+++++|+||||+||+||||||+||+.|+|||+|||||||+|+|||+++++|.||+ |++|||+ +++|+++|+
T Consensus 3 ~a~~~~w~viDA~g~~LGRLAs~vAk~L~~Gd~VVViNaeki~iTG~k~~~K~yy~------htg~~g~~~~~~~~r~P~ 76 (145)
T 1vq8_J 3 VAEFDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYE------KRVDIGNDNGYFYPKRPD 76 (145)
T ss_dssp -CCCCCSEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHH------HHHHCCCSSCCCCCCSHH
T ss_pred ccccccEEEEeCCCCchHHHHHHHHHHHhcCCEEEEEeCEeeEecchhhhheeeeE------EeCCCCCCHHHHhhcChH
Confidence 35678999999999999999999999999999999999999999999999999998 8888875 999999999
Q ss_pred HHHHHHHhccCCCCChhhHHHhhcCccccCCCCChhhhccccCCchhhhhhcCCCCCeeehhhhhhhhCcch
Q 028649 83 KIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNY 154 (206)
Q Consensus 83 ~I~~raVrGMLP~K~~~Gr~al~rLkvy~G~p~p~~~~k~~vvP~al~v~~l~p~rk~~~lg~ls~~vGWk~ 154 (206)
+||++||+|||||||++|+++|+||+||+|+||| |+++++|.|+. .+++ ++|||+|||||++|||||
T Consensus 77 ~i~~~aVrGMLP~K~~lgr~~l~rLkVy~G~~~p---~k~~vv~~a~~-~~l~-~~k~~~lg~ls~~~Gwk~ 143 (145)
T 1vq8_J 77 GIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYD---EDGEVLDGTSL-DRLS-NIKFVTLGEISETLGANK 143 (145)
T ss_dssp HHHHHHHHTTTTTTSHHHHHHHHTEEECSSCCSS---SCCBCCTTCBC-CTTS-CCSEEEHHHHHHHHTCCC
T ss_pred HHHHHHHHhhcCCCCHHHHHHHhCeEEECCCCCC---CCceeeehhhh-hccC-CCCeEEHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999 89999999975 6775 899999999999999998
No 8
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=100.00 E-value=1.6e-47 Score=309.55 Aligned_cols=118 Identities=25% Similarity=0.409 Sum_probs=113.3
Q ss_pred CCCCCcccceEEEEeCCCCchhhHHHHHHHHHh------------CCCEEEEEeccceeecCccchhhhHhhhhhccccc
Q 028649 1 MVSGSGICAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMN 68 (206)
Q Consensus 1 ~~~~~~~~~~w~VIDA~g~~LGRLAs~VAk~Ll------------~Gd~VVVVNae~I~isG~k~r~k~~y~~~l~kr~~ 68 (206)
|+++.++.++|+||||+||+||||||.||++|+ |||+|||||||+|+|||++|++|.||+ |+
T Consensus 5 ~~~~~~~~r~W~viDA~g~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~------ht 78 (142)
T 3r8s_J 5 TAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYH------HT 78 (142)
T ss_dssp CCCTTTCCCCEEEEECTTCBHHHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCBCCE------EC
T ss_pred cCChhhccCcEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcccCccCchhhceEEEE------ec
Confidence 578899999999999999999999999999999 999999999999999999999999997 99
Q ss_pred ccCCC------CCccccCccHHHHHHHhccCCCCChhhHHHhhcCccccCCCCChhhhccccCCchh
Q 028649 69 TKPSH------GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDAL 129 (206)
Q Consensus 69 ~~P~~------g~~~~r~P~~I~~raVrGMLP~K~~~Gr~al~rLkvy~G~p~p~~~~k~~vvP~al 129 (206)
+|||+ +++++++|++|||+||+|||| ||++|+.+|+||+||+|+||||++|+ |..|
T Consensus 79 gypGg~k~~~~~~~~~r~P~~ii~~aVrGMLP-kn~lgr~~l~rLkVy~G~~hph~aq~----p~~l 140 (142)
T 3r8s_J 79 GHIGGIKQATFEEMIARRPERVIEIAVKGMLP-KGPLGRAMFRKLKVYAGNEHNHAAQQ----PQVL 140 (142)
T ss_dssp SSTTCEECCBHHHHHHHCSHHHHHHHHHHHSC-SSHHHHHHHTTEEECSSSCCSCGGGC----CEEC
T ss_pred CcCCCccccCHHHHHhhCHHHHHHHHHHhcCC-CChhHHHHHhCCEEECCCCCCcccCC----Ceec
Confidence 99986 889999999999999999999 69999999999999999999999999 7665
No 9
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=100.00 E-value=6.4e-47 Score=305.45 Aligned_cols=114 Identities=29% Similarity=0.464 Sum_probs=109.5
Q ss_pred cccceEEEEeCCCCchhhHHHHHHHHHh------------CCCEEEEEeccceeecCccchhhhHhhhhhcccccccCCC
Q 028649 6 GICAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH 73 (206)
Q Consensus 6 ~~~~~w~VIDA~g~~LGRLAs~VAk~Ll------------~Gd~VVVVNae~I~isG~k~r~k~~y~~~l~kr~~~~P~~ 73 (206)
.++++|+||||+||+||||||+||+.|+ |||+|||||||+|+|||+++++|.||+ |++|||+
T Consensus 8 ~~~r~w~viDA~~~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~------htgypGg 81 (140)
T 3v2d_N 8 QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTR------YSGYPGG 81 (140)
T ss_dssp CCCCCEEEEECSSSBTTHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCEEEE------ECSSTTC
T ss_pred cccceEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcceEccCchhhheeeEE------ecccCCc
Confidence 7899999999999999999999999998 999999999999999999999999997 9999996
Q ss_pred ------CCccccCccHHHHHHHhccCCCCChhhHHHhhcCccccCCCCChhhhccccCCchhh
Q 028649 74 ------GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALK 130 (206)
Q Consensus 74 ------g~~~~r~P~~I~~raVrGMLP~K~~~Gr~al~rLkvy~G~p~p~~~~k~~vvP~al~ 130 (206)
+++++++|++|||+||+||||+ |++|+.+|+||+||+|+||||++|+ |.+|.
T Consensus 82 lk~~~~~~~~~r~P~~ii~~aVrGMLPk-~~lgr~~l~rLkVy~G~~hph~aq~----p~~~~ 139 (140)
T 3v2d_N 82 LKKIPLEKMLATHPERVLEHAVKGMLPK-GPLGRRLFKRLKVYAGPDHPHQAQR----PEKLE 139 (140)
T ss_dssp EEEEEHHHHHHHCTHHHHHHHHHHTSCS-SHHHHHHHHTEEECSSSCCSCGGGC----CEEEC
T ss_pred ceeccHHHhhhhCHHHHHHHHHHhcCCC-ChhHHHHHhCCEEeCCCCCCcccCC----CeecC
Confidence 8999999999999999999995 9999999999999999999999999 77653
No 10
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=9.5e-46 Score=301.04 Aligned_cols=118 Identities=22% Similarity=0.302 Sum_probs=110.1
Q ss_pred CCCCcc---cceEEEEeCCCCchhhHHHHHHHHHh------------CCCEEEEEeccceeecCccchhhhHhhhhhccc
Q 028649 2 VSGSGI---CAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKR 66 (206)
Q Consensus 2 ~~~~~~---~~~w~VIDA~g~~LGRLAs~VAk~Ll------------~Gd~VVVVNae~I~isG~k~r~k~~y~~~l~kr 66 (206)
+++... .++|+||||+||+||||||+||++|+ |||+|||||||+|+|||+++++|.||+
T Consensus 6 ~k~~~~~~~~r~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~~D~Gd~VVViNaeki~~tG~k~~~K~yy~------ 79 (148)
T 2ftc_H 6 RAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSS------ 79 (148)
T ss_pred cchhhhhcccCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCccccCCCEEEEEeceeeEeccchHhhheeee------
Confidence 344445 99999999999999999999999999 999999999999999999999999997
Q ss_pred ccccCCC------CCccccCccHHHHHHHhccCCCCChhhHHHhhcCccccCCCCChhhhccccCCchhh
Q 028649 67 MNTKPSH------GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALK 130 (206)
Q Consensus 67 ~~~~P~~------g~~~~r~P~~I~~raVrGMLP~K~~~Gr~al~rLkvy~G~p~p~~~~k~~vvP~al~ 130 (206)
|++|||+ +++++++|++|||+||+||||+ |++|+.+|+||+||+|.+|||+.|+ |..+.
T Consensus 80 htg~pGg~k~~~~~~~~~r~P~~ii~~aVrGMLPk-n~lgr~~l~rLkVy~G~~hP~~aq~----p~~~~ 144 (148)
T 2ftc_H 80 HTGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPK-NLHRRTMMERLHLFPDEYIPEDILK----NLVEE 144 (148)
T ss_pred eeCCcCCceeccHHHHhhcCHHHHHHHHHHhcCCC-CchHHHHHhCcEEeCCCCCChHHhC----Ceeec
Confidence 9999996 8999999999999999999995 8999999999999999999999999 65543
No 11
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=100.00 E-value=5.2e-46 Score=306.16 Aligned_cols=114 Identities=29% Similarity=0.464 Sum_probs=109.0
Q ss_pred cccceEEEEeCCCCchhhHHHHHHHHHh------------CCCEEEEEeccceeecCccchhhhHhhhhhcccccccCCC
Q 028649 6 GICAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH 73 (206)
Q Consensus 6 ~~~~~w~VIDA~g~~LGRLAs~VAk~Ll------------~Gd~VVVVNae~I~isG~k~r~k~~y~~~l~kr~~~~P~~ 73 (206)
.+.++|+||||+||+||||||.||+.|+ |||+|||||||+|+|||++|++|.||+ |++|||+
T Consensus 31 ~~~r~W~VIDA~g~~LGRLAs~VAk~L~GKhKP~ytP~~D~GD~VVVINaekI~iTG~K~~~K~yy~------htgypGg 104 (163)
T 3f1f_N 31 QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTR------YSGYPGG 104 (163)
T ss_dssp CCCCCBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGCBCSTTHHHHCEECC------BCSSTTC
T ss_pred cccCcEEEEeCCCCchHHHHHHHHHHHhcCCCCccCCcccCCCEEEEEeCcccccCCchhhheeeEE------ecCcCCc
Confidence 7899999999999999999999999998 999999999999999999999999997 9999996
Q ss_pred ------CCccccCccHHHHHHHhccCCCCChhhHHHhhcCccccCCCCChhhhccccCCchhh
Q 028649 74 ------GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALK 130 (206)
Q Consensus 74 ------g~~~~r~P~~I~~raVrGMLP~K~~~Gr~al~rLkvy~G~p~p~~~~k~~vvP~al~ 130 (206)
+++|+++|++|||+||+||||+ |++|+.+|+||+||+|+||||++|+ |.+|.
T Consensus 105 lk~~t~~~~~~r~P~~Ii~~AVrGMLPk-n~lGr~~l~rLkVY~G~~hPh~aQ~----P~~l~ 162 (163)
T 3f1f_N 105 LKKIPLEKMLATHPERVLEHAVKGMLPK-GPLGRRLFKRLKVYAGPDHPHQAQR----PEKLE 162 (163)
T ss_dssp BCCEEHHHHHHSSCHHHHHHHHHTTSCS-SHHHHHHHHTCEECSSSCCCCCSCC----CBCC-
T ss_pred ceeeehHHhhhcCHHHHHHHHHHhcCCC-ChhHHHHHhCCEEECCCCCCcccCC----CeecC
Confidence 8899999999999999999995 9999999999999999999999999 77653
No 12
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=100.00 E-value=5.3e-45 Score=303.01 Aligned_cols=112 Identities=29% Similarity=0.412 Sum_probs=107.3
Q ss_pred ccceEEEEeCCCCchhhHHHHHHHHHh------------CCCEEEEEeccceeecCccchhhhHhhhhhcccccccCCC-
Q 028649 7 ICAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH- 73 (206)
Q Consensus 7 ~~~~w~VIDA~g~~LGRLAs~VAk~Ll------------~Gd~VVVVNae~I~isG~k~r~k~~y~~~l~kr~~~~P~~- 73 (206)
+.++|+||||+||+||||||.||+.|+ |||+|||||||+|+|||+++++|.||+ |++|||+
T Consensus 37 ~~r~W~vIDA~g~~LGRLAs~IAk~L~GKhKP~ytP~~D~GD~VVVINAeki~lTG~K~~~K~yy~------htgypGGl 110 (174)
T 2zjr_G 37 DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTR------YTGYQGGL 110 (174)
T ss_dssp SCCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSCSSSSCEEEE------CCSSCSSC
T ss_pred ccccEEEEeCCCCchHHHHHHHHHHHhccCCCccCccccCCCEEEEEeCeeeEeccchhhceEEEE------ecCcCCCc
Confidence 899999999999999999999999999 999999999999999999999999997 9999986
Q ss_pred -----CCccccCccHHHHHHHhccCCCCChhhHHHhhcCccccCCCCChhhhccccC
Q 028649 74 -----GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVI 125 (206)
Q Consensus 74 -----g~~~~r~P~~I~~raVrGMLP~K~~~Gr~al~rLkvy~G~p~p~~~~k~~vv 125 (206)
+++++++|++||++||+|||| ||++|+++|+||+||+|+||||++|+.+++
T Consensus 111 k~~~~~~~~~r~P~~Ii~~AVrGMLP-kn~lGr~~l~rLkVy~G~~hph~aqkp~~l 166 (174)
T 2zjr_G 111 KTETAREALSKHPERVIEHAVFGMLP-KGRQGRAMHTRLKVYAGETHPHSAQKPQVL 166 (174)
T ss_dssp CEEEESTTTTSCHHHHHHHHHGGGSC-CSHHHHHHHTTCEECSCSTGGGGSCCSCCC
T ss_pred ccccHHHHhhcChHHHHHHHHHhcCC-CChhHHHHHhCeEEECCCCCChhccCCeEE
Confidence 899999999999999999999 599999999999999999999999994433
No 13
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=6.5e-45 Score=315.35 Aligned_cols=126 Identities=29% Similarity=0.430 Sum_probs=104.0
Q ss_pred CCCCc---ccceEEEEeCCCCchhhHHHHHHHHHh------------CCCEEEEEeccceeecCccchhhhHhhhhhccc
Q 028649 2 VSGSG---ICAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKR 66 (206)
Q Consensus 2 ~~~~~---~~~~w~VIDA~g~~LGRLAs~VAk~Ll------------~Gd~VVVVNae~I~isG~k~r~k~~y~~~l~kr 66 (206)
+++.. +.++|+||||+||+||||||+||++|+ |||+|||||||+|+|||++|++|.||+
T Consensus 102 ~k~~~v~~~~r~W~VIDA~g~vLGRLAS~IAk~LrGKhKP~ytP~vD~GD~VVVINAeKI~lTG~K~~~K~Y~r------ 175 (250)
T 3bbo_L 102 PKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRR------ 175 (250)
T ss_dssp ----------CCCCEECCSSCCSSTTHHHHTTTTTTTTTTCCCTTSCCSCCCEESCCSSCCCCSGGGGTCCCBC------
T ss_pred CChhhcccccceEEEEeCCCCchHHHHHHHHHHHccCCCCccCccccCCCEEEEEecceEEecCChhhceEEEE------
Confidence 45555 699999999999999999999999999 999999999999999999999999775
Q ss_pred ccccCCC------CCccccCccHHHHHHHhccCCCCChhhHHHhhcCccccCCCCChhhhccccCCchhhhhhc
Q 028649 67 MNTKPSH------GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALKVLRL 134 (206)
Q Consensus 67 ~~~~P~~------g~~~~r~P~~I~~raVrGMLP~K~~~Gr~al~rLkvy~G~p~p~~~~k~~vvP~al~v~~l 134 (206)
|++|||+ +++|+++|++|||+||+||||+ |++|+.+|+||+||+|.+|||++|+.+++|.++++.++
T Consensus 176 HsgyPGGlK~~t~~~l~~r~PerIi~kAVrGMLPk-n~lGr~~lkrLkVY~G~~HPh~aQkp~~l~ia~k~v~~ 248 (250)
T 3bbo_L 176 HSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPK-GRLGRYLFNHLKVYKGAEHPHQAQQPIDLPLRDKRIRV 248 (250)
T ss_dssp CCSSSSCCCBCCHHHHTTSCTTHHHHHHHHTTSCS-SSSHHHHHTTCCCCSSSCCSCTTSCC------------
T ss_pred ecCcCCCcccccHHHhhhcChHHHHHHHHHhcCCC-CchHHHHHhCcEEeCCCCCCHHHcCCeeechhhheeec
Confidence 9999996 7899999999999999999995 99999999999999999999999999999999887766
No 14
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=69.02 E-value=4.1 Score=29.01 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=25.4
Q ss_pred CCCeeehhhhhhhhCcchHHHHHHHHHH
Q 028649 137 GHKYCLLGRLASEVGWNYYDTIRELEKK 164 (206)
Q Consensus 137 ~rk~~~lg~ls~~vGWk~~~~v~~le~k 164 (206)
.+|-+.|.+||.++|-+-+++++++++-
T Consensus 18 ~~Kvv~LedLA~~F~l~t~~~i~RI~~L 45 (72)
T 1wi9_A 18 KSKVVLLEDLAFQMGLRTQDAINRIQDL 45 (72)
T ss_dssp HCSEECHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HcCeeeHHHHHHHhCCChHHHHHHHHHH
Confidence 4789999999999999999999988764
No 15
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=59.93 E-value=4.8 Score=30.19 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=20.1
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 028649 20 MLGRLASIVAKELLNGQKVVAVR 42 (206)
Q Consensus 20 ~LGRLAs~VAk~Ll~Gd~VVVVN 42 (206)
..|+||..++++|..||.|.|--
T Consensus 59 ~wgk~AE~~~~yl~KG~~V~VeG 81 (108)
T 3koj_A 59 GWGAVAQELQDRCRLNDEVVLEG 81 (108)
T ss_dssp EETHHHHHHHHHCCTTCEEEEEE
T ss_pred EEhHHHHHHHHhCCCCCEEEEEE
Confidence 35899999999999999998854
No 16
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=46.17 E-value=11 Score=28.88 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=20.1
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 028649 20 MLGRLASIVAKELLNGQKVVAVR 42 (206)
Q Consensus 20 ~LGRLAs~VAk~Ll~Gd~VVVVN 42 (206)
..|++|..++++|..||.|+|.-
T Consensus 69 ~wg~~Ae~~~~~l~KG~~V~VeG 91 (128)
T 4dam_A 69 ANRQLATNASGSLAVGDPVVVQG 91 (128)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEcHHHHHHHHhcCCCCEEEEEE
Confidence 35899999999999999998864
No 17
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=43.59 E-value=13 Score=27.44 Aligned_cols=23 Identities=17% Similarity=0.010 Sum_probs=19.8
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 028649 20 MLGRLASIVAKELLNGQKVVAVR 42 (206)
Q Consensus 20 ~LGRLAs~VAk~Ll~Gd~VVVVN 42 (206)
..|++|..++++|..||.|.|.-
T Consensus 56 ~wg~~Ae~~~~~l~KG~~V~V~G 78 (116)
T 3vdy_A 56 LWRKTAENTALYCQKGSLVGVSG 78 (116)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEEE
T ss_pred EECHHHHHHHHhCCCCCEEEEEE
Confidence 46899999999999999988763
No 18
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=41.17 E-value=14 Score=27.68 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.8
Q ss_pred chh-hHHHHHHHHHhCCCEEEEEe
Q 028649 20 MLG-RLASIVAKELLNGQKVVAVR 42 (206)
Q Consensus 20 ~LG-RLAs~VAk~Ll~Gd~VVVVN 42 (206)
..| ++|..++++|..|+.|.|.-
T Consensus 60 ~wg~~~Ae~~~~~l~KG~~V~V~G 83 (124)
T 3ulp_A 60 VYDQNIVDLIDKYLRKGRRVYVQG 83 (124)
T ss_dssp ECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEEchHHHHHHhhcCCCCEEEEEE
Confidence 357 89999999999999998864
No 19
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=39.86 E-value=16 Score=28.66 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=19.9
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 028649 20 MLGRLASIVAKELLNGQKVVAVR 42 (206)
Q Consensus 20 ~LGRLAs~VAk~Ll~Gd~VVVVN 42 (206)
..|++|..++++|..|+.|.|.-
T Consensus 69 ~wg~~Ae~~~~~l~KG~~V~VeG 91 (153)
T 1z9f_A 69 TFGRLAEFARTYLTKGRLVLVEG 91 (153)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEEE
T ss_pred EECHHHHHHHhhCCCCCEEEEEE
Confidence 35899999999999999998864
No 20
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=39.81 E-value=17 Score=27.74 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.4
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 028649 20 MLGRLASIVAKELLNGQKVVAVR 42 (206)
Q Consensus 20 ~LGRLAs~VAk~Ll~Gd~VVVVN 42 (206)
..|++|..+++.|..||.|.|.-
T Consensus 55 ~wg~~Ae~~~~~l~KG~~V~V~G 77 (134)
T 2vw9_A 55 LFGRTAEIANQYLSKGSSVLIEG 77 (134)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEcHHHHHHHHhCCCCCEEEEEE
Confidence 35899999999999898888753
No 21
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=37.88 E-value=33 Score=27.28 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=26.7
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEe
Q 028649 8 CAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVR 42 (206)
Q Consensus 8 ~~~w~VIDA~g~~LGRLAs~VAk~Ll~Gd~VVVVN 42 (206)
..+|+-|=+-| |.||..|.++|..|+.|+|.-
T Consensus 84 ~tdf~~V~vfG---g~lAE~i~~ylkkG~rVlVeG 115 (148)
T 3stb_C 84 DKDFHTVRVFD---SDYSSRVKEQLRDGEWFLVTG 115 (148)
T ss_dssp SEEEEEEEECS---HHHHHHHHHHCCTTCEEEEEE
T ss_pred ccceEEEEEEC---ChHHHHHHHHhcCCCEEEEEE
Confidence 44577776666 899999999999999998864
No 22
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=36.82 E-value=19 Score=28.59 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.0
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 028649 20 MLGRLASIVAKELLNGQKVVAVR 42 (206)
Q Consensus 20 ~LGRLAs~VAk~Ll~Gd~VVVVN 42 (206)
+.|++|..++++|..|+.|+|.-
T Consensus 59 ~wg~~Ae~~~~~l~KG~~V~VeG 81 (168)
T 3afp_A 59 IWREAAENVAESLTRGARVIVTG 81 (168)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEEE
T ss_pred EehHHHHHHHHhCCCCCEEEEEE
Confidence 34899999999999999998863
No 23
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=36.17 E-value=21 Score=27.62 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=19.6
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 028649 20 MLGRLASIVAKELLNGQKVVAVR 42 (206)
Q Consensus 20 ~LGRLAs~VAk~Ll~Gd~VVVVN 42 (206)
..|++|..++++|..||.|.|.-
T Consensus 59 ~wg~~Ae~~~~~l~KG~~V~V~G 81 (145)
T 1qvc_A 59 LFGKLAEVASEYLRKGSQVYIEG 81 (145)
T ss_dssp EETHHHHHHHHHCCTTCEEEEEE
T ss_pred EehHHHHHHHHhcCCCCEEEEEE
Confidence 35789999999999999998863
No 24
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=36.07 E-value=17 Score=29.23 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.3
Q ss_pred chhhHHHHHHHHHhCCCEEEEE
Q 028649 20 MLGRLASIVAKELLNGQKVVAV 41 (206)
Q Consensus 20 ~LGRLAs~VAk~Ll~Gd~VVVV 41 (206)
+.|+||..++++|..|+.|.|.
T Consensus 60 ~wg~~Ae~~~~~l~KG~~V~Ve 81 (178)
T 1eqq_A 60 LFGKLAEVASEYLRKGSQVYIE 81 (178)
T ss_dssp ECHHHHHHHHHHCCTTCEEEEC
T ss_pred EccHHHHHHHHhcCCCCEEEEE
Confidence 4688999999999999998885
No 25
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=33.96 E-value=23 Score=26.75 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=18.8
Q ss_pred hh-hHHHHHHHHHhCCCEEEEEe
Q 028649 21 LG-RLASIVAKELLNGQKVVAVR 42 (206)
Q Consensus 21 LG-RLAs~VAk~Ll~Gd~VVVVN 42 (206)
.| ++|..++++|..|+.|.|.-
T Consensus 74 wg~~~Ae~~~~~l~KG~~V~V~G 96 (132)
T 3ull_A 74 FRPGLRDVAYQYVKKGSRIYLEG 96 (132)
T ss_dssp CSTTHHHHHHHHCCTTCEEEEEE
T ss_pred EchHHHHHHHhhCCCCCEEEEEE
Confidence 46 69999999999999988763
No 26
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=33.12 E-value=22 Score=27.95 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHhCCCEEEEEe
Q 028649 21 LGRLASIVAKELLNGQKVVAVR 42 (206)
Q Consensus 21 LGRLAs~VAk~Ll~Gd~VVVVN 42 (206)
.|+||..++++|..|+.|.|.-
T Consensus 63 wg~~Ae~~~~~l~KG~~V~VeG 84 (158)
T 3tqy_A 63 FNRLAEIVGEYLRKGSKIYIEG 84 (158)
T ss_dssp ETHHHHHHHHHCCTTCEEEEEE
T ss_pred EhHHHHHHHhhcCCCCEEEEEE
Confidence 6889999999999999988854
No 27
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=31.16 E-value=24 Score=27.69 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=19.5
Q ss_pred chhhH-HHHHHHHHhCCCEEEEEe
Q 028649 20 MLGRL-ASIVAKELLNGQKVVAVR 42 (206)
Q Consensus 20 ~LGRL-As~VAk~Ll~Gd~VVVVN 42 (206)
+.|++ |..++++|..|+.|.|.-
T Consensus 58 ~wgk~lAe~~~~yl~KG~~V~VeG 81 (148)
T 3k7u_C 58 CFGELFSAEVKQKVKEGNVVCVNG 81 (148)
T ss_dssp EESHHHHHHHHHHCCTTCEEEEEE
T ss_pred EECcHHHHHHHhhCCCCCEEEEEE
Confidence 35676 999999999999998864
No 28
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=28.63 E-value=39 Score=23.30 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=22.9
Q ss_pred cCCCCCeeehhhhhhhhCcchHHHHHHHHH
Q 028649 134 LQKGHKYCLLGRLASEVGWNYYDTIRELEK 163 (206)
Q Consensus 134 l~p~rk~~~lg~ls~~vGWk~~~~v~~le~ 163 (206)
|..-+.=.|.||++..+||.....-..||.
T Consensus 12 l~s~~QGMTaGEVAA~f~w~Le~ar~aLeq 41 (68)
T 3i71_A 12 LTSVRQGMTAGEVAAHFGWPLEKARNALEQ 41 (68)
T ss_dssp HHHCTTCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHhccccHHHHHHHhCCcHHHHHHHHHH
Confidence 444567899999999999987666666653
No 29
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=28.57 E-value=28 Score=27.79 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.3
Q ss_pred hhh-HHHHHHHHHhCCCEEEEEe
Q 028649 21 LGR-LASIVAKELLNGQKVVAVR 42 (206)
Q Consensus 21 LGR-LAs~VAk~Ll~Gd~VVVVN 42 (206)
.|+ ||..++++|..|+.|.|.-
T Consensus 78 wg~~lAe~~~~~l~KG~~V~VeG 100 (169)
T 3lgj_A 78 FNPHFAKIALQYLHKGSKVYIEG 100 (169)
T ss_dssp CCHHHHHHHHHHCCTTCEEEEEE
T ss_pred eCHHHHHHHHHhCCCCCEEEEEE
Confidence 578 9999999999999998864
No 30
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=28.46 E-value=32 Score=28.48 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=19.8
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 028649 20 MLGRLASIVAKELLNGQKVVAVR 42 (206)
Q Consensus 20 ~LGRLAs~VAk~Ll~Gd~VVVVN 42 (206)
+.|+||..++++|..|+.|+|.-
T Consensus 59 awgklAE~v~~~L~KG~~V~VeG 81 (199)
T 3eiv_A 59 VWRQAAENVAESLQRGMRVIVQG 81 (199)
T ss_dssp EETHHHHHHHHHCCTTCEEEEEE
T ss_pred EEhHHHHHHHHhcCCCCEEEEEE
Confidence 35789999999999999998853
No 31
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=27.38 E-value=29 Score=28.02 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=22.0
Q ss_pred eEEEEeCCCCchhhH-HHHHHHHHhCCCEEEEE
Q 028649 10 KRVVVDARHHMLGRL-ASIVAKELLNGQKVVAV 41 (206)
Q Consensus 10 ~w~VIDA~g~~LGRL-As~VAk~Ll~Gd~VVVV 41 (206)
.||=|-+ .|++ |..++++|..|+.|.|.
T Consensus 68 dw~~Vv~----wgk~lAE~~~~yL~KGs~V~Ve 96 (164)
T 3k81_C 68 DHHTIRC----FGELFSAEVKQKVKEGNVVCVN 96 (164)
T ss_dssp EEEEEEE----CCHHHHHHHHHHCCTTCEEEEC
T ss_pred EEEEEEE----ECCHHHHHHHhhcCCCCEEEEE
Confidence 4655543 5678 99999999999998874
No 32
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=26.63 E-value=16 Score=26.57 Aligned_cols=23 Identities=9% Similarity=0.248 Sum_probs=19.8
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 028649 20 MLGRLASIVAKELLNGQKVVAVR 42 (206)
Q Consensus 20 ~LGRLAs~VAk~Ll~Gd~VVVVN 42 (206)
..|++|..++++|..|+.|.|.-
T Consensus 54 ~~g~~Ae~~~~~l~KG~~V~V~G 76 (104)
T 1txy_A 54 VSGHENQAITHSITVGSRITVQG 76 (104)
T ss_dssp EESSTTHHHHTTCCTTCEEEEEE
T ss_pred EEhHHHHHHHhhCCCCCEEEEEE
Confidence 56899999999999999988753
No 33
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=26.59 E-value=94 Score=22.59 Aligned_cols=36 Identities=25% Similarity=0.562 Sum_probs=26.8
Q ss_pred CCcccceEEEEeCCCCchhhHHHHHHHHHh-CCCEEEEEecc
Q 028649 4 GSGICAKRVVVDARHHMLGRLASIVAKELL-NGQKVVAVRCE 44 (206)
Q Consensus 4 ~~~~~~~w~VIDA~g~~LGRLAs~VAk~Ll-~Gd~VVVVNae 44 (206)
+..+...++|+ + +|+++..+|+.|. .|..|+||..+
T Consensus 3 ~~~~~~~viIi-G----~G~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 3 AVDICNHALLV-G----YGRVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CCCCCSCEEEE-C----CSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred cccCCCCEEEE-C----cCHHHHHHHHHHHHCCCCEEEEECC
Confidence 34455566666 2 4999999999997 79899998754
No 34
>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1
Probab=23.27 E-value=1.1e+02 Score=22.67 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=18.0
Q ss_pred cceEEEEeCC-CCchhhHHHHHHHHH
Q 028649 8 CAKRVVVDAR-HHMLGRLASIVAKEL 32 (206)
Q Consensus 8 ~~~w~VIDA~-g~~LGRLAs~VAk~L 32 (206)
.++.+||..+ +.-.|.+|+++|..-
T Consensus 3 ~K~vivvr~dL~m~~GKiaAQ~~HAa 28 (117)
T 1q7s_A 3 YKMILVVRNDLKMGKGKVAAQCSHAA 28 (117)
T ss_dssp EEEEEEEEGGGCCCHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCcCHhHHHHHHHHHH
Confidence 3466777654 578999999987654
No 35
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=22.53 E-value=73 Score=27.80 Aligned_cols=69 Identities=12% Similarity=0.222 Sum_probs=42.9
Q ss_pred CCEEEEEeccceeecCccch-hhhHhhhhhcccccccCCC-CCccccCccH---HHHHHHhccCCCCChhhHHHhhcCcc
Q 028649 35 GQKVVAVRCEEICMSGGLVR-QKMKYMRFLRKRMNTKPSH-GPIHFRAPAK---IFWRTVRGMIPHKTKRGAAALARLKA 109 (206)
Q Consensus 35 Gd~VVVVNae~I~isG~k~r-~k~~y~~~l~kr~~~~P~~-g~~~~r~P~~---I~~raVrGMLP~K~~~Gr~al~rLkv 109 (206)
...|+|+.++++.++ +.+. ........+.--...||.+ +.+|.-++.. .+|..|+.+|+. ...+++++
T Consensus 147 ~~~~~I~D~~g~sl~-~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~------~t~~KI~~ 219 (403)
T 1olm_A 147 ETITIIYDCEGLGLK-HLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSE------DTRKKIMV 219 (403)
T ss_dssp CCEEEEEECTTCCGG-GGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCH------HHHHTEEE
T ss_pred cceEEEEECCCCCHH-HHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCH------hhhceEEE
Confidence 468999999999886 3332 1111222222235789987 6666655544 578899999983 23455555
Q ss_pred c
Q 028649 110 Y 110 (206)
Q Consensus 110 y 110 (206)
+
T Consensus 220 ~ 220 (403)
T 1olm_A 220 L 220 (403)
T ss_dssp C
T ss_pred E
Confidence 4
No 36
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=20.02 E-value=85 Score=18.79 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=20.1
Q ss_pred eehhhhhhhhCcchHHHHHHHHHH
Q 028649 141 CLLGRLASEVGWNYYDTIRELEKK 164 (206)
Q Consensus 141 ~~lg~ls~~vGWk~~~~v~~le~k 164 (206)
+++-+||.++|=.-+++++.|.+.
T Consensus 3 ~rv~~lAkel~~~~k~l~~~l~~~ 26 (49)
T 1nd9_A 3 VTIKTLAAERQTSVERLVQQFADA 26 (49)
T ss_dssp ECTTHHHHHHSSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHc
Confidence 457789999999999999888753
Done!