BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028650
         (206 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3BY4|A Chain A, Structure Of Ovarian Tumor (Otu) Domain In Complex With
           Ubiquitin
          Length = 212

 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 57/100 (57%), Gaps = 6/100 (6%)

Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ ++  V ++ VK ++A + K N+DY  WI   E WGGAIE+ I++D     I   DI 
Sbjct: 50  REMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDID 109

Query: 137 TTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFE 176
             + +       F E K+   ++++++ +HYD++ ++ F+
Sbjct: 110 AVKIE------KFNEDKFDNYILILFNGIHYDSLTMNEFK 143


>pdb|3C0R|A Chain A, Structure Of Ovarian Tumor (Otu) Domain In Complex With
           Ubiquitin
 pdb|3C0R|C Chain C, Structure Of Ovarian Tumor (Otu) Domain In Complex With
           Ubiquitin
          Length = 212

 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 6/100 (6%)

Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ ++  V ++ VK ++A + K N+DY  WI   E WGGAIE+ I++D     I   DI 
Sbjct: 50  REXVSKEVLNNPVKFNDAILDKPNKDYAQWILKXESWGGAIEIGIISDALAVAIYVVDID 109

Query: 137 TTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFE 176
             + +       F E K+   ++++++ +HYD++  + F+
Sbjct: 110 AVKIE------KFNEDKFDNYILILFNGIHYDSLTXNEFK 143


>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
           Glu
 pdb|3MW9|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
           Glu
 pdb|3MW9|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
           Glu
 pdb|3MW9|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
           Glu
 pdb|3MW9|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
           Glu
 pdb|3MW9|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
           Glu
 pdb|3MVO|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
           Complexed With Eu3+
 pdb|3MVO|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
           Complexed With Eu3+
 pdb|3MVO|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
           Complexed With Eu3+
 pdb|3MVO|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
           Complexed With Eu3+
 pdb|3MVO|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
           Complexed With Eu3+
 pdb|3MVO|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
           Complexed With Eu3+
 pdb|3MVQ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Zinc
 pdb|3MVQ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Zinc
 pdb|3MVQ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Zinc
 pdb|3MVQ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Zinc
 pdb|3MVQ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Zinc
 pdb|3MVQ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Zinc
 pdb|3QMU|A Chain A, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
 pdb|3QMU|B Chain B, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
 pdb|3QMU|C Chain C, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
 pdb|3QMU|D Chain D, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
 pdb|3QMU|E Chain E, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
 pdb|3QMU|F Chain F, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
 pdb|3QMU|G Chain G, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
 pdb|3QMU|H Chain H, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
 pdb|3QMU|I Chain I, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
 pdb|3QMU|J Chain J, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
 pdb|3QMU|K Chain K, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
 pdb|3QMU|L Chain L, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
          Length = 501

 Score = 27.7 bits (60), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 110 PEKWGGAIELSILADYYGSEIAAYDIQTTRC 140
           P+   G  E+S +AD Y S I  YDI    C
Sbjct: 167 PDMSTGEREMSWIADTYASTIGHYDINAHAC 197


>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With
           Bithionol
 pdb|3ETD|B Chain B, Structure Of Glutamate Dehydrogenase Complexed With
           Bithionol
 pdb|3ETD|C Chain C, Structure Of Glutamate Dehydrogenase Complexed With
           Bithionol
 pdb|3ETD|D Chain D, Structure Of Glutamate Dehydrogenase Complexed With
           Bithionol
 pdb|3ETD|E Chain E, Structure Of Glutamate Dehydrogenase Complexed With
           Bithionol
 pdb|3ETD|F Chain F, Structure Of Glutamate Dehydrogenase Complexed With
           Bithionol
 pdb|3ETE|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
           Complexed With Hexachlorophene
 pdb|3ETE|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
           Complexed With Hexachlorophene
 pdb|3ETE|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
           Complexed With Hexachlorophene
 pdb|3ETE|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
           Complexed With Hexachlorophene
 pdb|3ETE|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
           Complexed With Hexachlorophene
 pdb|3ETE|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
           Complexed With Hexachlorophene
 pdb|3ETG|A Chain A, Glutamate Dehydrogenase Complexed With Gw5074
 pdb|3ETG|B Chain B, Glutamate Dehydrogenase Complexed With Gw5074
 pdb|3ETG|C Chain C, Glutamate Dehydrogenase Complexed With Gw5074
 pdb|3ETG|D Chain D, Glutamate Dehydrogenase Complexed With Gw5074
 pdb|3ETG|E Chain E, Glutamate Dehydrogenase Complexed With Gw5074
 pdb|3ETG|F Chain F, Glutamate Dehydrogenase Complexed With Gw5074
          Length = 501

 Score = 27.7 bits (60), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 110 PEKWGGAIELSILADYYGSEIAAYDIQTTRC 140
           P+   G  E+S +AD Y S I  YDI    C
Sbjct: 167 PDMSTGEREMSWIADTYASTIGHYDINAHAC 197


>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate
           Dehydrogenase
 pdb|1NR1|B Chain B, Crystal Structure Of The R463a Mutant Of Human Glutamate
           Dehydrogenase
 pdb|1NR1|C Chain C, Crystal Structure Of The R463a Mutant Of Human Glutamate
           Dehydrogenase
 pdb|1NR1|D Chain D, Crystal Structure Of The R463a Mutant Of Human Glutamate
           Dehydrogenase
 pdb|1NR1|E Chain E, Crystal Structure Of The R463a Mutant Of Human Glutamate
           Dehydrogenase
 pdb|1NR1|F Chain F, Crystal Structure Of The R463a Mutant Of Human Glutamate
           Dehydrogenase
          Length = 496

 Score = 27.3 bits (59), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 110 PEKWGGAIELSILADYYGSEIAAYDIQTTRC 140
           P+   G  E+S +AD Y S I  YDI    C
Sbjct: 162 PDMSTGEREMSWIADTYASTIGHYDINAHAC 192


>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form
 pdb|1L1F|B Chain B, Structure Of Human Glutamate Dehydrogenase-Apo Form
 pdb|1L1F|C Chain C, Structure Of Human Glutamate Dehydrogenase-Apo Form
 pdb|1L1F|D Chain D, Structure Of Human Glutamate Dehydrogenase-Apo Form
 pdb|1L1F|E Chain E, Structure Of Human Glutamate Dehydrogenase-Apo Form
 pdb|1L1F|F Chain F, Structure Of Human Glutamate Dehydrogenase-Apo Form
          Length = 505

 Score = 27.3 bits (59), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 110 PEKWGGAIELSILADYYGSEIAAYDIQTTRC 140
           P+   G  E+S +AD Y S I  YDI    C
Sbjct: 171 PDMSTGEREMSWIADTYASTIGHYDINAHAC 201


>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NQT|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NQT|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NQT|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NQT|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NQT|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NQT|G Chain G, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NQT|H Chain H, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NQT|I Chain I, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NQT|J Chain J, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NQT|K Chain K, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NQT|L Chain L, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NR7|A Chain A, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
 pdb|1NR7|B Chain B, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
 pdb|1NR7|C Chain C, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
 pdb|1NR7|D Chain D, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
 pdb|1NR7|E Chain E, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
 pdb|1NR7|F Chain F, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
 pdb|1NR7|G Chain G, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
 pdb|1NR7|H Chain H, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
 pdb|1NR7|I Chain I, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
 pdb|1NR7|J Chain J, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
 pdb|1NR7|K Chain K, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
 pdb|1NR7|L Chain L, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
          Length = 496

 Score = 27.3 bits (59), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 110 PEKWGGAIELSILADYYGSEIAAYDIQTTRC 140
           P+   G  E+S +AD Y S I  YDI    C
Sbjct: 162 PDMSTGEREMSWIADTYASTIGHYDINAHAC 192


>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1
 pdb|2EK9|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 With
           Bestatin
          Length = 421

 Score = 27.3 bits (59), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 40  AEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAIAATVASDTVKHS 92
           A  +A+ L   +   K  TDT    + +G  + G+IG K  AA+++ D +K +
Sbjct: 242 ASGVAVTLELARVMSKLKTDTELRFITFGAEENGLIGSKKYAASLSEDEIKRT 294


>pdb|3PHU|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus
 pdb|3PHU|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus
          Length = 219

 Score = 26.9 bits (58), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 95  FIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDI 135
            +G S +DY   +    +WG  +E S+LA   G  I  + +
Sbjct: 83  LVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTV 123


>pdb|3PHW|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
           Complex With Ubiquitin
 pdb|3PHW|C Chain C, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
           Complex With Ubiquitin
 pdb|3PHW|E Chain E, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
           Complex With Ubiquitin
 pdb|3PHW|G Chain G, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
           Complex With Ubiquitin
 pdb|3PHX|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
           Complex With Isg15
          Length = 185

 Score = 26.9 bits (58), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 95  FIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDI 135
            +G S +DY   +    +WG  +E S+LA   G  I  + +
Sbjct: 83  LVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTV 123


>pdb|3ZNH|A Chain A, Crimean Congo Hemorrhagic Fever Virus Otu Domain In
           Complex With Ubiquitin-propargyl
          Length = 183

 Score = 26.9 bits (58), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 95  FIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDI 135
            +G S +DY   +    +WG  +E S+LA   G  I  + +
Sbjct: 81  LVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTV 121


>pdb|4HXD|B Chain B, Diversity Of Ubiquitin And Isg15 Specificity Amongst
           Nairoviruses Viral Ovarian Tumor Domain Proteases
 pdb|4HXD|D Chain D, Diversity Of Ubiquitin And Isg15 Specificity Amongst
           Nairoviruses Viral Ovarian Tumor Domain Proteases
          Length = 174

 Score = 26.9 bits (58), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 97  GKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSE 156
           G S  +Y        +WGG++E S+L+ +  + I  + + +T  +       F   + S 
Sbjct: 82  GISKDEYIKVAMKDNEWGGSLEASMLSKHLQTTIILWVVNST--EQVTAAIKFGPGRVST 139

Query: 157 RVMLIY-DELHYDAVAI 172
            + L++    H+DA+ I
Sbjct: 140 ALNLMHVGRTHFDALRI 156


>pdb|3PSE|A Chain A, Structure Of A Viral Otu Domain Protease Bound To
           Interferon- Stimulated Gene 15 (Isg15)
          Length = 171

 Score = 26.9 bits (58), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 95  FIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDI 135
            +G S +DY   +    +WG  +E S+LA   G  I  + +
Sbjct: 83  LVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTV 123


>pdb|3PRP|A Chain A, Structural Analysis Of A Viral Otu Domain Protease From
           The Crimean- Congo Hemorrhagic Fever Virus In Complex
           With Human Ubiquitin
 pdb|3PRP|C Chain C, Structural Analysis Of A Viral Otu Domain Protease From
           The Crimean- Congo Hemorrhagic Fever Virus In Complex
           With Human Ubiquitin
          Length = 178

 Score = 26.6 bits (57), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 95  FIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDI 135
            +G S +DY   +    +WG  +E S+LA   G  I  + +
Sbjct: 81  LVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTV 121


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,370,119
Number of Sequences: 62578
Number of extensions: 250006
Number of successful extensions: 474
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 17
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)