BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028650
(206 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55BI3|OTU1_DICDI Ubiquitin thioesterase OTU1 OS=Dictyostelium discoideum GN=yod1
PE=3 SV=1
Length = 325
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 77/110 (70%), Gaps = 5/110 (4%)
Query: 80 IAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR 139
IA V SD +++EA +GKSN+ YC+WIQ+P+ WGGAIELSIL+++Y EIAA+DI T
Sbjct: 158 IAQNVKSDPFEYNEAVLGKSNEGYCNWIQNPKNWGGAIELSILSNHYKVEIAAFDISTQL 217
Query: 140 CDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPV 189
YG +++KY+ERV LIYD +HYDA++I + P +FD + V
Sbjct: 218 MYCYG-----EDRKYTERVYLIYDGIHYDALSICLTKNGPEDFDITRFSV 262
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 2 LIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTA 61
LIYDG+HYDAL+I + PE+FD T F V ++ + L++++ + +TDTA
Sbjct: 233 LIYDGIHYDALSICLTKNGPEDFDITRFSVDDKDSLAKMK----VLIEKEFKAGKFTDTA 288
Query: 62 NFTLCYGVCQIGVIGQKAIAATVASDT 88
F+L C + G+K AA AS T
Sbjct: 289 KFSLICLNCNKTLKGEKE-AAIHASTT 314
>sp|Q8CB27|OTU1_MOUSE Ubiquitin thioesterase OTU1 OS=Mus musculus GN=Yod1 PE=1 SV=1
Length = 343
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 73/115 (63%), Gaps = 12/115 (10%)
Query: 63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
FT Y V + GV+ ++ IA VASD V +SEA +GK+N+DYC WI+ + WGG
Sbjct: 157 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPVLYSEAILGKTNEDYCDWIRRDDTWGG 216
Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAV 170
AIE+SIL+ +Y EI D QT R D +G ++ Y++RV+LIYD +HYD +
Sbjct: 217 AIEISILSKFYQCEICVVDTQTVRIDRFG-----EDAGYTKRVLLIYDGIHYDPL 266
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 14/81 (17%)
Query: 1 MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDL----ALKLVKEQQRKKT 56
+LIYDG+HYD L + + P+ TIF +D+ AL+L E +RK+
Sbjct: 255 LLIYDGIHYDPLQRNFPD--PDTPPLTIFSSN--------DDIVLVQALELADEARRKRQ 304
Query: 57 YTDTANFTLCYGVCQIGVIGQ 77
+TD FTL +CQ G+ GQ
Sbjct: 305 FTDVNRFTLRCMICQKGLTGQ 325
>sp|Q29FC9|OTU1_DROPS Ubiquitin thioesterase OTU1 OS=Drosophila pseudoobscura
pseudoobscura GN=GA18292 PE=3 SV=1
Length = 358
Score = 100 bits (249), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 76/123 (61%), Gaps = 17/123 (13%)
Query: 80 IAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR 139
IA V++DT ++++A +GKSN DYC+WIQ + WGGAIE+SIL++YYG EI DIQ
Sbjct: 197 IAQEVSADTQQYNDAVLGKSNSDYCAWIQKADSWGGAIEVSILSNYYGIEIDVVDIQNAI 256
Query: 140 CDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIGPAE 199
+ +G ++K + RV L++D +HYD + + E Q+SVP TI P E
Sbjct: 257 INRFG-----EDKNFGLRVFLLFDGIHYDPLYM--------ETQQNSVPA----TIFPVE 299
Query: 200 ELA 202
E+
Sbjct: 300 EMG 302
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 2 LIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTA 61
L++DG+HYD L + E TIFPV++ AE +A E + + +T+
Sbjct: 272 LLFDGIHYDPLYM---ETQQNSVPATIFPVEEMGVYQQAEQIA----NEAKSSRQFTNVD 324
Query: 62 NFTLCYGVCQIGVIGQ 77
FTL C + ++GQ
Sbjct: 325 KFTLRCMDCDVMLVGQ 340
>sp|Q5VVQ6|OTU1_HUMAN Ubiquitin thioesterase OTU1 OS=Homo sapiens GN=YOD1 PE=1 SV=1
Length = 348
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 72/115 (62%), Gaps = 12/115 (10%)
Query: 63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
FT Y V + GV+ ++ IA VASD +SEA +GK+NQ+YC WI+ + WGG
Sbjct: 162 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDFYSEAILGKTNQEYCDWIKRDDTWGG 221
Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAV 170
AIE+SIL+ +Y EI D QT R D +G ++ Y++RV+LIYD +HYD +
Sbjct: 222 AIEISILSKFYQCEICVVDTQTVRIDRFG-----EDAGYTKRVLLIYDGIHYDPL 271
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 14/81 (17%)
Query: 1 MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDL----ALKLVKEQQRKKT 56
+LIYDG+HYD L + + P+ TIF +D+ AL+L E +R++
Sbjct: 260 LLIYDGIHYDPLQRNFPD--PDTPPLTIFSSN--------DDIVLVQALELADEARRRRQ 309
Query: 57 YTDTANFTLCYGVCQIGVIGQ 77
+TD FTL VCQ G+ GQ
Sbjct: 310 FTDVNRFTLRCMVCQKGLTGQ 330
>sp|Q32Q05|OTU1_RAT Ubiquitin thioesterase OTU1 OS=Rattus norvegicus GN=Yod1 PE=2 SV=1
Length = 343
Score = 97.4 bits (241), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 12/115 (10%)
Query: 63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
FT Y V + GV+ ++ IA VASD +SEA +GK+N++YC WI+ + WGG
Sbjct: 157 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDLYSEAILGKTNEEYCDWIRRDDTWGG 216
Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAV 170
AIE+SIL+ +Y EI D QT R D +G ++ Y++RV+LIYD +HYD +
Sbjct: 217 AIEISILSKFYQCEICVVDTQTVRIDRFG-----EDAGYTKRVLLIYDGIHYDPL 266
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 14/81 (17%)
Query: 1 MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDL----ALKLVKEQQRKKT 56
+LIYDG+HYD L + + P+ TIF +D+ AL+L E +RK+
Sbjct: 255 LLIYDGIHYDPLQRNFPD--PDTPPLTIFSSN--------DDIVLVQALELADEARRKRQ 304
Query: 57 YTDTANFTLCYGVCQIGVIGQ 77
+TD FTL +CQ G+ GQ
Sbjct: 305 FTDVNRFTLRCMLCQKGLTGQ 325
>sp|Q567B1|OTU1_DANRE Ubiquitin thioesterase OTU1 OS=Danio rerio GN=yod1 PE=2 SV=1
Length = 301
Score = 97.1 bits (240), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 89/156 (57%), Gaps = 15/156 (9%)
Query: 22 EEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIG----- 76
EE ++ PVQ T GP+ ++ + ++R ++ FT V + GV
Sbjct: 77 EEKNKPKPPVQPTVTKGPSFEVTPVV---ERRVVPADNSCLFTSVNYVMEGGVYDPACAS 133
Query: 77 --QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYD 134
+ IA VASD +SEA +GK+N++YC+WI+ + WGGAIE+SIL+ +Y EI D
Sbjct: 134 EMRGLIAQIVASDPTAYSEAVLGKTNEEYCTWIRRDDTWGGAIEVSILSKFYQCEICVVD 193
Query: 135 IQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAV 170
QT R D +G ++ Y++RV+LIYD +HYD +
Sbjct: 194 TQTVRVDRFG-----EDAGYTKRVLLIYDGIHYDPL 224
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 1 MLIYDGLHYDAL-AISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTD 59
+LIYDG+HYD L + P P QT+F + A L+L E +RK+ +TD
Sbjct: 213 LLIYDGIHYDPLQKVLPGSDVPA---QTVFSTVDDVILAQA----LELADEARRKRQFTD 265
Query: 60 TANFTLCYGVCQIGVIGQK 78
F L VCQ G++GQK
Sbjct: 266 VNRFALRCMVCQTGLVGQK 284
>sp|Q05B57|OTU1_BOVIN Ubiquitin thioesterase OTU1 OS=Bos taurus GN=YOD1 PE=2 SV=1
Length = 348
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 73/117 (62%), Gaps = 12/117 (10%)
Query: 63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
FT Y V + GV+ ++ IA VASD +SEA +GK+N++YC WI+ + WGG
Sbjct: 162 FTSVYYVVEGGVLNPACAPEMRRFIAQIVASDPDFYSEAILGKTNEEYCDWIKRDDTWGG 221
Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAI 172
AIE+SIL+ +Y EI D QT R D +G ++ Y++RV+LIYD +HYD + +
Sbjct: 222 AIEISILSKFYQCEICVVDTQTVRIDRFG-----EDAGYTKRVLLIYDGIHYDPLHL 273
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 14/81 (17%)
Query: 1 MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDL----ALKLVKEQQRKKT 56
+LIYDG+HYD L + + P+ TIF +D+ AL+L E ++K+
Sbjct: 260 LLIYDGIHYDPLHLVFPD--PDTPPLTIF--------SSYDDIVLVQALELADEARKKRQ 309
Query: 57 YTDTANFTLCYGVCQIGVIGQ 77
+TD FTL VCQ G+ GQ
Sbjct: 310 FTDVNRFTLRCMVCQKGLTGQ 330
>sp|Q0IH43|OTU1_XENLA Ubiquitin thioesterase OTU1 OS=Xenopus laevis GN=yod1 PE=2 SV=1
Length = 304
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 70/115 (60%), Gaps = 12/115 (10%)
Query: 63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
FT Y V + GV + IA VASD + +A +GKSN++YCSWI+ + WGG
Sbjct: 118 FTSIYYVVEGGVYDPACALEMRSLIAEIVASDQSAYCDAVLGKSNEEYCSWIRREDTWGG 177
Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAV 170
AIE+SIL+ +Y EI D QT R D +G ++ Y++RV+LIYD +HYD +
Sbjct: 178 AIEVSILSKFYQCEICVVDTQTVRIDRFG-----EDSGYTKRVLLIYDGIHYDPL 227
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 1 MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDT 60
+LIYDG+HYD L F P+ T+F T A A++L + ++K+ +TD
Sbjct: 216 LLIYDGIHYDPLQ-RQFPD-PDMPPMTVFST----TDDEALVQAMELADDARKKRQFTDV 269
Query: 61 ANFTLCYGVCQIGVIGQKA 79
F L CQ G+ GQ A
Sbjct: 270 NQFALRCMACQKGLTGQSA 288
>sp|Q5F3A6|OTU1_CHICK Ubiquitin thioesterase OTU1 OS=Gallus gallus GN=YOD1 PE=2 SV=1
Length = 302
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 12/115 (10%)
Query: 63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
FT Y V + GV + IA VASD + EA +GK+N++YC WI+ E WGG
Sbjct: 116 FTSVYYVVEGGVYDPGCAPEMRSLIAQIVASDPEAYCEAVLGKTNREYCEWIRREETWGG 175
Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAV 170
AIE+SIL+ +Y EI D QT R D +G ++ Y++RV+LIYD +HYD +
Sbjct: 176 AIEVSILSKFYQCEICVVDTQTVRIDRFG-----EDAGYTKRVLLIYDGIHYDPL 225
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 1 MLIYDGLHYDALAIS-PFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTD 59
+LIYDG+HYD L P P QTIF + A L+L E +RK+ +TD
Sbjct: 214 LLIYDGIHYDPLERKIPDSDVPP---QTIFSTTDDVVLAQA----LELADEARRKRQFTD 266
Query: 60 TANFTLCYGVCQIGVIGQ 77
FTL VCQ G+ GQ
Sbjct: 267 VNRFTLRCMVCQKGLTGQ 284
>sp|Q9VRJ9|OTU1_DROME Ubiquitin thioesterase OTU1 OS=Drosophila melanogaster GN=CG4603
PE=2 SV=1
Length = 347
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 75/125 (60%), Gaps = 8/125 (6%)
Query: 80 IAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR 139
IA VA+D +++A +GKSN +YC+WIQ + WGGAIE+SIL++YYG EI DIQ
Sbjct: 186 IAQEVAADPQSYNDAVLGKSNAEYCAWIQKADSWGGAIEVSILSNYYGIEIDVVDIQNAI 245
Query: 140 CDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIGPAE 199
+ +G ++K + RV L++D +HYD + + E +P + PV + AE
Sbjct: 246 INRFG-----EDKNFGLRVFLLFDGIHYDPLYM---ETSPSAAPATIFPVEELGVYQQAE 297
Query: 200 ELAFE 204
+LA E
Sbjct: 298 QLANE 302
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 2 LIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTA 61
L++DG+HYD L + E +P TIFPV++ AE LA E Q + YT+
Sbjct: 261 LLFDGIHYDPLYM---ETSPSAAPATIFPVEELGVYQQAEQLA----NEAQSSRQYTNVD 313
Query: 62 NFTLCYGVCQIGVIGQ 77
FTL C + ++GQ
Sbjct: 314 KFTLRCMQCDVRLVGQ 329
>sp|O13974|OTU1_SCHPO Putative ubiquitin thioesterase otu1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=otu1 PE=1 SV=1
Length = 329
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Query: 77 QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
++ +A V S+ +S A +GK + +Y SWI+ WGG IELSIL+ ++G EI + D++
Sbjct: 163 REIVANQVLSNPDIYSTAILGKPSIEYASWIRKETSWGGYIELSILSSHFGVEICSVDVK 222
Query: 137 TTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISA 174
T R D Y + +R ++Y +HYD A++A
Sbjct: 223 TGRVDSYN-----PQPATGQRTYIVYSGIHYDLAALAA 255
Score = 33.9 bits (76), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 2 LIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTA 61
++Y G+HYD A++ + D +F TI P L+K YTDTA
Sbjct: 241 IVYSGIHYDLAALAAVLWD-TDVDVVLFDASD-VTITPYVQQLASLLKNMHY---YTDTA 295
Query: 62 NFTLCYGVCQIGVIGQK 78
+F++ +C G++G+K
Sbjct: 296 SFSIRCTICGTGLVGEK 312
>sp|P43558|OTU1_YEAST Ubiquitin thioesterase OTU1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=OTU1 PE=1 SV=1
Length = 301
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 77 QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
++ ++ V ++ VK ++A + K N+DY WI E WGGAIE+ I++D I DI
Sbjct: 139 REMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDID 198
Query: 137 TTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFE 176
+ + F E K+ ++++++ +HYD++ ++ F+
Sbjct: 199 AVKIE------KFNEDKFDNYILILFNGIHYDSLTMNEFK 232
>sp|B2RRE7|OTUD4_MOUSE OTU domain-containing protein 4 OS=Mus musculus GN=Otud4 PE=1 SV=1
Length = 1107
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 93 EAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEK 152
EAFI S ++Y +++P++W G +E+S L+ Y + Y SH E
Sbjct: 80 EAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFVIYQEPNV------SPSHVTEN 133
Query: 153 KYSERVMLIYDE-LHYDAV 170
+ E+V+L + HYD V
Sbjct: 134 NFPEKVLLCFSNGNHYDIV 152
>sp|Q01804|OTUD4_HUMAN OTU domain-containing protein 4 OS=Homo sapiens GN=OTUD4 PE=1 SV=3
Length = 1113
Score = 38.5 bits (88), Expect = 0.031, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 93 EAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEK 152
EAFI S ++Y +++P++W G +E+S L+ Y + Y S E
Sbjct: 80 EAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNV------SPSQVTEN 133
Query: 153 KYSERVMLIYDE-LHYDAVAISAFEGAPVEFDQSS 186
+ E+V+L + HYD V P+++ +SS
Sbjct: 134 NFPEKVLLCFSNGNHYDIV-------YPIKYKESS 161
>sp|Q7RTX8|HIN1L_HUMAN Putative HIN1-like protein OS=Homo sapiens GN=HIN1L PE=5 SV=1
Length = 443
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 93 EAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEK 152
EA IG S + Y +++P++W G +E+S L+ Y + T + S E
Sbjct: 80 EAIIGGSFEGYLKRLENPQEWVGQMEISALSLMYRKDF------ITNLEPNVSPSQVTEN 133
Query: 153 KYSERVMLIYDE-LHYDAVAISAFEGAPVEFDQSS 186
+ E+V+L + HYD V PV++ +SS
Sbjct: 134 NFPEKVLLCFSNGNHYDIV-------YPVKYKESS 161
>sp|Q1IZI9|RRF_DEIGD Ribosome-recycling factor OS=Deinococcus geothermalis (strain DSM
11300) GN=frr PE=3 SV=1
Length = 183
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 9 YDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYG 68
+D A++P E A + D + P KG TI ++L ++ E++RK + N+
Sbjct: 72 WDRGALNPIEKAIRDSDLGLNPNNKGDTIF----ISLPMLTEERRKDLVKNAKNYAEEAR 127
Query: 69 VCQIGVIGQKAI-----AATVASDTVKHSEAFIGKSNQDYCSWIQD 109
V I I + A+ V D +K +EA + K +Y ++D
Sbjct: 128 VA-IRSIRKHALDEVKKVEGVGDDEIKRAEAEVQKITDEYIKRVED 172
>sp|A6TK63|ATPA_ALKMQ ATP synthase subunit alpha OS=Alkaliphilus metalliredigens (strain
QYMF) GN=atpA PE=3 SV=1
Length = 505
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 15/112 (13%)
Query: 74 VIGQKAIAAT-VASDTV---KHSEAF-----IGKSNQDYCSWIQDPEKWGGAIELSILAD 124
+IG + T +A DT+ KHS+ IG+ + S IQD + GA+E +I+
Sbjct: 167 IIGDRQTGKTAIAIDTIINQKHSDVICIYVAIGQ-KKSTVSQIQDTLEKNGAMEYTIIVA 225
Query: 125 YYGSEIAAYDIQTTRCDLYGQCSHFQE-KKYSERVMLIYDELHYDAVAISAF 175
SE+A Y C+ +E + + V++IYD+L AVA A
Sbjct: 226 STASELAPLQYIAP----YAGCAMGEEFMENGKHVLIIYDDLSKHAVAYRAM 273
>sp|Q9UUK3|OTU2_SCHPO Ubiquitin thioesterase otu2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=otu2 PE=4 SV=1
Length = 324
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 75 IGQKAIAATVASDTVKHSEAFIG-----KSNQ-----DYCSWIQDPEKWGGAIELSILAD 124
+ +A+ A +KH E F G +S + DYC+ I++ KWG IE+ LA+
Sbjct: 213 LNSQALRNKSADYVLKHCEQFEGFLLDEESGEVLPVSDYCNEIRNNSKWGSDIEIQALAN 272
Query: 125 YYGSEIAAYDIQ 136
+ Y+ +
Sbjct: 273 SLEVPVHVYNTE 284
>sp|Q8WYP5|ELYS_HUMAN Protein ELYS OS=Homo sapiens GN=AHCTF1 PE=1 SV=3
Length = 2266
Score = 31.6 bits (70), Expect = 3.4, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 23 EFDQTIFPVQKGR--TIGPAEDLALKLVKEQQRKK 55
EFD + P ++GR I P+ED+ K VKE++ K
Sbjct: 1964 EFDMSAIPRKRGRPRKINPSEDVGSKAVKEERSPK 1998
>sp|Q54P70|Y4757_DICDI OTU domain-containing protein DDB_G0284757 OS=Dictyostelium
discoideum GN=DDB_G0284757 PE=4 SV=2
Length = 766
Score = 31.2 bits (69), Expect = 5.3, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 95 FIGKSN-QDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKK 153
F+ +N DYC+ + WG + L A+++GS+I+ ++ + + + K
Sbjct: 686 FVNTNNWDDYCNDMSKNGNWGDHLTLLAAAEHFGSKISIISSVESQSNFFIEI--IPSKI 743
Query: 154 YSERVMLI--YDELHYDAV 170
+++V+L+ Y E HY ++
Sbjct: 744 LNDKVLLLSHYAEFHYGSL 762
>sp|B2HME5|NADD_MYCMM Probable nicotinate-nucleotide adenylyltransferase
OS=Mycobacterium marinum (strain ATCC BAA-535 / M)
GN=nadD PE=3 SV=1
Length = 215
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 4 YDGLHYDALAISPFEGAPEEFDQTIF-----PVQKGRTIGPAEDLALKLV 48
+D +HY L + E D+ +F P QKGR + PAED L V
Sbjct: 5 FDPIHYGHLVAASEVADRYELDEVVFVPSGQPWQKGRRVSPAEDRYLMTV 54
>sp|P33341|YEHB_ECOLI Uncharacterized outer membrane usher protein YehB OS=Escherichia
coli (strain K12) GN=yehB PE=3 SV=1
Length = 826
Score = 30.4 bits (67), Expect = 8.7, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 110 PEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDA 169
PE WG ++ DY+G ++ D Q + + + + Y+ YDE H++
Sbjct: 496 PEGWGSVSLSTLWRDYWGRSGSSKDYQLSYSN------NLRRISYTLAASQAYDENHHEE 549
Query: 170 VAISAFEGAPVEF-DQSSVPVRK 191
+ F P ++ D S P R+
Sbjct: 550 KRFNIFISIPFDWGDDVSTPRRQ 572
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,444,403
Number of Sequences: 539616
Number of extensions: 3047316
Number of successful extensions: 5830
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5778
Number of HSP's gapped (non-prelim): 37
length of query: 206
length of database: 191,569,459
effective HSP length: 112
effective length of query: 94
effective length of database: 131,132,467
effective search space: 12326451898
effective search space used: 12326451898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)