Your job contains 1 sequence.
>028651
MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGGRMTGAARRGPLSNAR
PSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFS
EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAEI
PLQARVNVTGVNGRRKRTVVMTYVNL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 028651
(206 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2151779 - symbol:ALY4 "ALWAYS EARLY 4" species... 572 1.8e-55 1
TAIR|locus:2205293 - symbol:AT1G66260 species:3702 "Arabi... 543 2.1e-52 1
TAIR|locus:2181763 - symbol:AT5G02530 species:3702 "Arabi... 363 2.5e-33 1
ZFIN|ZDB-GENE-070928-29 - symbol:alyref "Aly/REF export f... 272 6.6e-28 2
MGI|MGI:1913144 - symbol:Alyref2 "Aly/REF export factor 2... 263 1.2e-26 2
UNIPROTKB|E1C2L5 - symbol:THOC4 "Uncharacterized protein"... 299 1.5e-26 1
MGI|MGI:1341044 - symbol:Alyref "Aly/REF export factor" s... 285 4.6e-25 1
UNIPROTKB|Q3T0I4 - symbol:ALYREF "THO complex subunit 4" ... 284 5.9e-25 1
UNIPROTKB|F1PL92 - symbol:ALYREF "Uncharacterized protein... 284 5.9e-25 1
UNIPROTKB|E9PB61 - symbol:ALYREF "THO complex subunit 4" ... 284 5.9e-25 1
UNIPROTKB|Q86V81 - symbol:ALYREF "THO complex subunit 4" ... 284 5.9e-25 1
FB|FBgn0010774 - symbol:Ref1 "RNA and export factor bindi... 268 2.9e-23 1
RGD|1594679 - symbol:Thoc4 "THO complex 4" species:10116 ... 249 3.0e-21 1
DICTYBASE|DDB_G0285361 - symbol:DDB_G0285361 "RNA-binding... 198 3.0e-18 2
MGI|MGI:1921076 - symbol:Poldip3 "polymerase (DNA-directe... 169 8.4e-14 2
RGD|1311073 - symbol:Poldip3 "polymerase (DNA-directed), ... 169 1.1e-13 2
UNIPROTKB|A7YW33 - symbol:POLDIP3 "Polymerase (DNA-direct... 169 1.1e-13 2
UNIPROTKB|F1PS15 - symbol:POLDIP3 "Uncharacterized protei... 169 1.1e-13 2
UNIPROTKB|Q9BY77 - symbol:POLDIP3 "Polymerase delta-inter... 169 1.1e-13 2
UNIPROTKB|E2RT45 - symbol:POLDIP3 "Uncharacterized protei... 169 1.3e-13 2
UNIPROTKB|Q5F4B6 - symbol:POLDIP3 "Uncharacterized protei... 167 1.4e-13 2
FB|FBgn0032439 - symbol:Ref2 "RNA and export factor bindi... 146 1.6e-13 2
ASPGD|ASPL0000065384 - symbol:AN7706 species:162425 "Emer... 161 3.1e-13 2
POMBASE|SPBC1D7.04 - symbol:mlo3 "RNA binding protein Mlo... 144 4.2e-13 2
UNIPROTKB|G4MKS1 - symbol:MGG_06668 "Uncharacterized prot... 134 2.9e-11 2
WB|WBGene00000122 - symbol:aly-3 species:6239 "Caenorhabd... 129 7.4e-11 2
UNIPROTKB|B4DMM2 - symbol:POLDIP3 "Polymerase delta-inter... 151 7.4e-11 1
UNIPROTKB|F1SJQ4 - symbol:POLDIP3 "Uncharacterized protei... 152 2.3e-10 1
TAIR|locus:2167649 - symbol:CBP20 "CAP-binding protein 20... 130 8.9e-08 1
WB|WBGene00000121 - symbol:aly-2 species:6239 "Caenorhabd... 111 2.2e-07 2
TAIR|locus:2075860 - symbol:U11/U12-31K "U11/U12-31K" spe... 128 3.2e-07 1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 114 6.1e-07 1
WB|WBGene00004387 - symbol:rnp-4 species:6239 "Caenorhabd... 112 1.0e-06 1
FB|FBgn0030956 - symbol:CG18259 species:7227 "Drosophila ... 121 1.5e-06 2
FB|FBgn0030959 - symbol:CG6961 species:7227 "Drosophila m... 121 1.5e-06 2
UNIPROTKB|B5G279 - symbol:NCBP2 "Nuclear cap-binding prot... 117 1.7e-06 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 127 2.6e-06 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 108 2.6e-06 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 108 2.6e-06 1
UNIPROTKB|Q5ZKR5 - symbol:NCBP2 "Nuclear cap-binding prot... 114 6.0e-06 1
UNIPROTKB|F5H606 - symbol:RBM7 "RNA-binding protein 7" sp... 105 6.1e-06 1
ASPGD|ASPL0000076347 - symbol:AN4505 species:162425 "Emer... 111 7.8e-06 1
ASPGD|ASPL0000011897 - symbol:AN3739 species:162425 "Emer... 123 8.4e-06 1
UNIPROTKB|F5GXV8 - symbol:RBM7 "RNA-binding protein 7" sp... 107 1.0e-05 1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi... 103 1.1e-05 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 101 1.9e-05 1
UNIPROTKB|Q15717 - symbol:ELAVL1 "ELAV-like protein 1" sp... 118 2.3e-05 1
UNIPROTKB|B4DVB8 - symbol:ELAVL1 "ELAV-like protein 1" sp... 118 2.7e-05 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 99 3.2e-05 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 99 3.2e-05 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 120 3.4e-05 1
FB|FBgn0264270 - symbol:Sxl "Sex lethal" species:7227 "Dr... 117 3.6e-05 1
WB|WBGene00001368 - symbol:exc-7 species:6239 "Caenorhabd... 118 4.1e-05 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 97 5.6e-05 1
GENEDB_PFALCIPARUM|PFF0760w - symbol:PFF0760w "RNA and ex... 106 5.6e-05 1
UNIPROTKB|F1N9I5 - symbol:ELAVL1 "Uncharacterized protein... 115 5.9e-05 1
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 115 5.9e-05 1
UNIPROTKB|Q6GLB5 - symbol:elavl1 "ELAV-like protein 1" sp... 115 5.9e-05 1
WB|WBGene00000120 - symbol:aly-1 species:6239 "Caenorhabd... 112 6.0e-05 1
UNIPROTKB|F1PSC4 - symbol:ELAVL1 "Uncharacterized protein... 115 6.2e-05 1
TAIR|locus:2206850 - symbol:AT1G73530 species:3702 "Arabi... 109 6.6e-05 1
ZFIN|ZDB-GENE-050306-51 - symbol:rbm8a "RNA binding motif... 108 7.1e-05 1
UNIPROTKB|E2R4B2 - symbol:TRA2A "Uncharacterized protein"... 112 0.00011 1
UNIPROTKB|Q06AA6 - symbol:TRA2A "Uncharacterized protein"... 112 0.00011 1
UNIPROTKB|Q2KJ71 - symbol:TRA2A "Transformer 2 alpha homo... 112 0.00011 1
MGI|MGI:1933972 - symbol:Tra2a "transformer 2 alpha homol... 112 0.00011 1
UNIPROTKB|Q13595 - symbol:TRA2A "Transformer-2 protein ho... 112 0.00011 1
RGD|1562563 - symbol:Tra2a "transformer 2 alpha homolog (... 112 0.00011 1
UNIPROTKB|I3L521 - symbol:I3L521 "Uncharacterized protein... 102 0.00013 1
DICTYBASE|DDB_G0292698 - symbol:DDB_G0292698 "RNA-binding... 112 0.00013 1
UNIPROTKB|G4N872 - symbol:MGG_06296 "Nuclear cap-binding ... 107 0.00013 1
FB|FBgn0033378 - symbol:tsu "tsunagi" species:7227 "Droso... 105 0.00013 1
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 112 0.00015 1
FB|FBgn0022943 - symbol:Cbp20 "cap binding protein 20" sp... 103 0.00015 1
SGD|S000004949 - symbol:HRB1 "Poly(A+) RNA-binding protei... 107 0.00015 2
UNIPROTKB|E5RH24 - symbol:PABPC1 "Polyadenylate-binding p... 93 0.00016 1
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B... 111 0.00019 1
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ... 111 0.00019 1
RGD|1308649 - symbol:Elavl1 "ELAV (embryonic lethal, abno... 111 0.00019 1
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 110 0.00020 1
POMBASE|SPAC23A1.09 - symbol:SPAC23A1.09 "RNA-binding pro... 92 0.00022 1
UNIPROTKB|F5GY08 - symbol:RBM7 "RNA-binding protein 7" sp... 107 0.00026 1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 91 0.00028 1
UNIPROTKB|P52299 - symbol:ncbp2 "Nuclear cap-binding prot... 101 0.00030 1
DICTYBASE|DDB_G0285403 - symbol:DDB_G0285403 "RNA-binding... 115 0.00030 1
UNIPROTKB|E5RJB9 - symbol:PABPC1 "Polyadenylate-binding p... 93 0.00033 1
WB|WBGene00003903 - symbol:pab-2 species:6239 "Caenorhabd... 113 0.00033 1
UNIPROTKB|Q3ZCE8 - symbol:RBM8A "RNA-binding protein 8A" ... 103 0.00037 1
UNIPROTKB|F6XAE9 - symbol:RBM8A "Uncharacterized protein"... 103 0.00037 1
UNIPROTKB|Q9Y5S9 - symbol:RBM8A "RNA-binding protein 8A" ... 103 0.00037 1
RGD|1310099 - symbol:Rbm8a "RNA binding motif protein 8A"... 103 0.00037 1
TAIR|locus:2039590 - symbol:AT2G27330 species:3702 "Arabi... 90 0.00037 1
WB|WBGene00003904 - symbol:pabp-2 species:6239 "Caenorhab... 105 0.00038 1
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 112 0.00038 1
DICTYBASE|DDB_G0285363 - symbol:DDB_G0285363 species:4468... 96 0.00040 2
UNIPROTKB|E2QV85 - symbol:RBM8A "Uncharacterized protein"... 103 0.00040 1
UNIPROTKB|I3LI59 - symbol:RBM8A "Uncharacterized protein"... 103 0.00040 1
UNIPROTKB|Q9Y580 - symbol:RBM7 "RNA-binding protein 7" sp... 107 0.00041 1
UNIPROTKB|J3KPD3 - symbol:RBM7 "RNA-binding protein 7" sp... 107 0.00042 1
TAIR|locus:2144945 - symbol:SCL28 "SC35-like splicing fac... 106 0.00043 1
WARNING: Descriptions of 30 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2151779 [details] [associations]
symbol:ALY4 "ALWAYS EARLY 4" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025715
Pfam:PF13865 KO:K12881 HOGENOM:HOG000239962 EMBL:BT010588
EMBL:AK227931 IPI:IPI00538146 RefSeq:NP_198588.2 UniGene:At.22374
ProteinModelPortal:Q6NQ72 SMR:Q6NQ72 STRING:Q6NQ72 PRIDE:Q6NQ72
EnsemblPlants:AT5G37720.1 GeneID:833750 KEGG:ath:AT5G37720
TAIR:At5g37720 InParanoid:Q6NQ72 OMA:EVERYAI PhylomeDB:Q6NQ72
ProtClustDB:CLSN2689042 Genevestigator:Q6NQ72 Uniprot:Q6NQ72
Length = 288
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 113/158 (71%), Positives = 134/158 (84%)
Query: 49 GAARRGPLS-NARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLH 107
G ARRGPL+ NARPSS+TI K RR R+ PWQ LFED LRAAG SG+EVGT+L+V+NL
Sbjct: 42 GPARRGPLAVNARPSSFTINKPVRRVRSLPWQSGLFEDGLRAAGASGVEVGTRLHVTNLD 101
Query: 108 PGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK 167
GVTN+DIRELFSEIGE++RYAIH+DKNGRPSG+AEVVY RRSDAF ALK+YNNVLLDG+
Sbjct: 102 QGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGR 161
Query: 168 PMKIEVVGTN--AEIPLQARVNV--TGVNGRRKRTVVM 201
PM++E++G N +E PL RVNV TG+NGR KRTVV+
Sbjct: 162 PMRLEILGGNNSSEAPLSGRVNVNVTGLNGRLKRTVVI 199
>TAIR|locus:2205293 [details] [associations]
symbol:AT1G66260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K12881 HSSP:O08583
HOGENOM:HOG000239962 ProtClustDB:CLSN2689042 EMBL:AF410310
EMBL:AY149925 IPI:IPI00520633 RefSeq:NP_001185329.1
RefSeq:NP_564871.1 UniGene:At.25606 ProteinModelPortal:Q94EH8
SMR:Q94EH8 STRING:Q94EH8 PaxDb:Q94EH8 PRIDE:Q94EH8
EnsemblPlants:AT1G66260.1 EnsemblPlants:AT1G66260.2 GeneID:842943
KEGG:ath:AT1G66260 TAIR:At1g66260 eggNOG:NOG257473
InParanoid:Q94EH8 OMA:HAEAMNI PhylomeDB:Q94EH8
Genevestigator:Q94EH8 Uniprot:Q94EH8
Length = 295
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 113/209 (54%), Positives = 148/209 (70%)
Query: 1 MATHVDMSLDDIIKSRKKSEXXXXXXXXXXXXXXXXXXXXXXXXXXMTGA-----ARRGP 55
M+ ++M+LD+I+K + KSE + G RRGP
Sbjct: 1 MSDALNMTLDEIVK-KSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGGGPVRRGP 59
Query: 56 LS-NARPSS-YTIAKSFRRTRNFPWQH--DLFEDSLRAAGISGIEVGTKLYVSNLHPGVT 111
L+ N RPSS ++I K RR R+ PWQ+ DL+E++LRA G+SG+EVGT +Y++NL GVT
Sbjct: 60 LAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQGVT 119
Query: 112 NDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171
N+DIREL++EIGELKRYAIH+DKNGRPSGSAEVVY RRSDA A+++YNNVLLDG+PMK+
Sbjct: 120 NEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMKL 179
Query: 172 EVVGTNAE-IPLQARVNVTGVNGRRKRTV 199
E++G N E P+ ARVNVTG+NGR KR+V
Sbjct: 180 EILGGNTESAPVAARVNVTGLNGRMKRSV 208
>TAIR|locus:2181763 [details] [associations]
symbol:AT5G02530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025715 Pfam:PF13865
KO:K12881 HSSP:O08583 eggNOG:NOG316507 HOGENOM:HOG000239962
OMA:IRNRPAI UniGene:At.27625 UniGene:At.72858 EMBL:AY140010
EMBL:BT006323 IPI:IPI00538790 RefSeq:NP_195873.2
ProteinModelPortal:Q8L719 SMR:Q8L719 IntAct:Q8L719 STRING:Q8L719
PaxDb:Q8L719 PRIDE:Q8L719 EnsemblPlants:AT5G02530.1 GeneID:831923
KEGG:ath:AT5G02530 TAIR:At5g02530 InParanoid:Q8L719
PhylomeDB:Q8L719 ProtClustDB:CLSN2918011 ArrayExpress:Q8L719
Genevestigator:Q8L719 Uniprot:Q8L719
Length = 292
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 87/194 (44%), Positives = 115/194 (59%)
Query: 1 MATHVDMSLDDIIKSRKKSEXXXXXXXXXXXXXXXXXXXXXXXXXXMTGAARR-GPLSNA 59
M+ +DMSLDDIIKS +K +G +RR A
Sbjct: 1 MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSN----SGPSRRFANRVGA 56
Query: 60 RPSSYTIAKSFRRTRNFPWQHDLF--EDSLRAA----------GISGIEVGTKLYVSNLH 107
R + Y+ ++ + WQ+D+F + S+ AA G S IE GTKLY+SNL
Sbjct: 57 RTAPYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLD 116
Query: 108 PGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK 167
GV+N+DI+ELFSE+G+LKRY IH+D++GR G+AEVV++RR DA AA+KRYNNV LDGK
Sbjct: 117 YGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGK 176
Query: 168 PMKIEVVGTNAEIP 181
MKIE+VGTN P
Sbjct: 177 LMKIEIVGTNLSAP 190
>ZFIN|ZDB-GENE-070928-29 [details] [associations]
symbol:alyref "Aly/REF export factor" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070928-29 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR025715 Pfam:PF13865
GeneTree:ENSGT00410000025615 OMA:IRNRPAI EMBL:CU693479
IPI:IPI00868115 Ensembl:ENSDART00000108647 ArrayExpress:F1Q9D1
Bgee:F1Q9D1 Uniprot:F1Q9D1
Length = 280
Score = 272 (100.8 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 61/152 (40%), Positives = 95/152 (62%)
Query: 54 GPLSNARPSSYTIAKS--FRRTRNFP--WQHDLFEDSLRA---------AGISGIEVGTK 100
GP+ N + S ++ + R + P WQHDLF++ + G +G+E G K
Sbjct: 67 GPMRNRQNLSRGRSRPTPYSRPKQLPDKWQHDLFDNGYSSNAGGGGGGGGGGAGVETGGK 126
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160
L VSNL GV++ DI+ELF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN
Sbjct: 127 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 186
Query: 161 NVLLDGKPMKIEVVGTNAEIPLQARVNVTGVN 192
V LDG+PM I++V ++I Q R + G+N
Sbjct: 187 GVPLDGRPMNIQLV--TSQIDAQRRTPMQGLN 216
Score = 55 (24.4 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 1 MATHVDMSLDDIIKSRKK 18
MA +DMSLDDIIK ++
Sbjct: 1 MADKMDMSLDDIIKQNRQ 18
>MGI|MGI:1913144 [details] [associations]
symbol:Alyref2 "Aly/REF export factor 2" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1913144 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 InterPro:IPR025715
Pfam:PF13865 KO:K12881 EMBL:AJ252141 EMBL:AK048243 IPI:IPI00311103
IPI:IPI00377350 RefSeq:NP_062357.3 UniGene:Mm.389208 PDB:2F3J
PDB:2KT5 PDB:2YKA PDBsum:2F3J PDBsum:2KT5 PDBsum:2YKA
ProteinModelPortal:Q9JJW6 SMR:Q9JJW6 IntAct:Q9JJW6 STRING:Q9JJW6
PhosphoSite:Q9JJW6 PaxDb:Q9JJW6 PRIDE:Q9JJW6 GeneID:56009
KEGG:mmu:56009 CTD:56009 eggNOG:NOG316507 HOGENOM:HOG000239962
HOVERGEN:HBG054806 InParanoid:Q9JJW6 OrthoDB:EOG4MW87F
EvolutionaryTrace:Q9JJW6 NextBio:311734 CleanEx:MM_REFBP2
Genevestigator:Q9JJW6 GermOnline:ENSMUSG00000060244 Uniprot:Q9JJW6
Length = 218
Score = 263 (97.6 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 63/152 (41%), Positives = 90/152 (59%)
Query: 49 GAARRGPLSNARPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNL 106
G RR + AR A + R + P WQHDLF+ G G+E G KL VSNL
Sbjct: 26 GGPRRNRPAIARGGRNRPAP-YSRPKPLPDKWQHDLFDSG--CGGGEGVETGAKLLVSNL 82
Query: 107 HPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166
GV++ DI+ELF+E G LK+ A+ +D++GR G+A+V + RR+DA A+K+Y V LDG
Sbjct: 83 DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG 142
Query: 167 KPMKIEVVGTNAEIPLQARVNVTGVNGRRKRT 198
+PM I++V + +I Q R +G G R+
Sbjct: 143 RPMDIQLVAS--QIDPQRRPAQSGNRGGMTRS 172
Score = 52 (23.4 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 1 MATHVDMSLDDIIK 14
MA +DMSLDDIIK
Sbjct: 1 MADKMDMSLDDIIK 14
>UNIPROTKB|E1C2L5 [details] [associations]
symbol:THOC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000346
"transcription export complex" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0046784 "intronless viral mRNA export
from host nucleus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006406 GO:GO:0071013
InterPro:IPR025715 Pfam:PF13865 GO:GO:0000346
GeneTree:ENSGT00410000025615 OMA:IRNRPAI EMBL:AADN02053597
IPI:IPI00576073 ProteinModelPortal:E1C2L5
Ensembl:ENSGALT00000011710 Uniprot:E1C2L5
Length = 258
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 76/192 (39%), Positives = 105/192 (54%)
Query: 1 MATHVDMSLDDIIKSRKKSEXXXXXXXXXXXXXXXXXXXXXXXXXXM-TGAARRGPLSN- 58
MA +DMSLDDIIK + + G A GP+ N
Sbjct: 1 MADKMDMSLDDIIKLNRSQRGGGRGGGRGGRGRGGVTRGGGPGRGGVGAGRAGGGPVRNR 60
Query: 59 ---ARPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTND 113
AR + R + P WQHDLF DS AG +G+E G KL VSNL GV++
Sbjct: 61 PVMARGGGRNRPAPYSRPKQLPEKWQHDLF-DSGFGAG-AGVETGGKLLVSNLDFGVSDA 118
Query: 114 DIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173
DI+ELF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN V LDG+PM I++
Sbjct: 119 DIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 178
Query: 174 VGTNAEIPLQAR 185
V ++I Q R
Sbjct: 179 V--TSQIDTQRR 188
>MGI|MGI:1341044 [details] [associations]
symbol:Alyref "Aly/REF export factor" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000346 "transcription export complex" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=TAS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0006810 "transport" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0046784 "intronless viral mRNA export from host
nucleus" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1341044 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 EMBL:CH466558
GO:GO:0003697 GO:GO:0051028 EMBL:AL663030 InterPro:IPR025715
Pfam:PF13865 KO:K12881 eggNOG:NOG316507 HOGENOM:HOG000239962
HOVERGEN:HBG054806 OrthoDB:EOG4MW87F CTD:10189
GeneTree:ENSGT00410000025615 OMA:IRNRPAI EMBL:U89876 EMBL:AJ252140
EMBL:BC120588 EMBL:BC137658 EMBL:AK035721 IPI:IPI00114407
IPI:IPI00122339 RefSeq:NP_035698.1 UniGene:Mm.1886 PDB:1NO8
PDBsum:1NO8 ProteinModelPortal:O08583 SMR:O08583 DIP:DIP-59977N
STRING:O08583 PhosphoSite:O08583 PaxDb:O08583 PRIDE:O08583
Ensembl:ENSMUST00000026125 GeneID:21681 KEGG:mmu:21681
UCSC:uc007mtl.1 InParanoid:Q0VBL5 EvolutionaryTrace:O08583
NextBio:300988 Bgee:O08583 CleanEx:MM_THOC4 Genevestigator:O08583
GermOnline:ENSMUSG00000025134 Uniprot:O08583
Length = 255
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 73/195 (37%), Positives = 101/195 (51%)
Query: 1 MATHVDMSLDDIIKSRKKSEXXXXXXXXXXXXXXXXXXXXXXXXXXMTGAARRGPLSNAR 60
MA +DMSLDDIIK + GP+ N R
Sbjct: 1 MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGAVQAAARVNRGG-GPMRN-R 58
Query: 61 PSSYTIAKSFRRTRNFP----------WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGV 110
P+ A R R P WQHDLF+ G +G+E G KL VSNL GV
Sbjct: 59 PAIARGAAGGGRNRPAPYSRPKQLPDKWQHDLFDSGF--GGGAGVETGGKLLVSNLDFGV 116
Query: 111 TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170
++ DI+ELF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN V LDG+PM
Sbjct: 117 SDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 176
Query: 171 IEVVGTNAEIPLQAR 185
I++V ++I Q R
Sbjct: 177 IQLV--TSQIDTQRR 189
>UNIPROTKB|Q3T0I4 [details] [associations]
symbol:ALYREF "THO complex subunit 4" species:9913 "Bos
taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0046784 "intronless viral mRNA
export from host nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000346 "transcription export complex"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 InterPro:IPR025715 Pfam:PF13865
GO:GO:0000346 GO:GO:0046784 KO:K12881 HSSP:Q9NQ94 eggNOG:NOG316507
HOGENOM:HOG000239962 OrthoDB:EOG4MW87F EMBL:BC102384
IPI:IPI00710588 RefSeq:NP_001030494.1 UniGene:Bt.48992
ProteinModelPortal:Q3T0I4 SMR:Q3T0I4 STRING:Q3T0I4 PRIDE:Q3T0I4
Ensembl:ENSBTAT00000011202 GeneID:537706 KEGG:bta:537706 CTD:10189
GeneTree:ENSGT00410000025615 InParanoid:Q3T0I4 OMA:IRNRPAI
NextBio:20877198 Uniprot:Q3T0I4
Length = 257
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 75/209 (35%), Positives = 107/209 (51%)
Query: 1 MATHVDMSLDDIIKSRKKSEXXXXXXXXXXXXXXXXXXXXXXXXXXMTGAARRGPLSNAR 60
MA +DMSLDDIIK + GP+ N R
Sbjct: 1 MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGG-GPIRN-R 58
Query: 61 PSSYTIAKS---------FRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPG 109
P+ A + R + P WQHDLF+ G +G+E G KL VSNL G
Sbjct: 59 PAIARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGF--GGGAGVETGGKLLVSNLDFG 116
Query: 110 VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169
V++ DI+ELF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN V LDG+PM
Sbjct: 117 VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 176
Query: 170 KIEVVGTNAEI---PLQARVNVTGVNGRR 195
I++V + + P Q+ VN G+ R
Sbjct: 177 NIQLVTSQIDTQRRPAQS-VNRGGMTRNR 204
>UNIPROTKB|F1PL92 [details] [associations]
symbol:ALYREF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025715
Pfam:PF13865 GeneTree:ENSGT00410000025615 OMA:IRNRPAI
EMBL:AAEX03006169 Ensembl:ENSCAFT00000009466 Uniprot:F1PL92
Length = 257
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 75/209 (35%), Positives = 107/209 (51%)
Query: 1 MATHVDMSLDDIIKSRKKSEXXXXXXXXXXXXXXXXXXXXXXXXXXMTGAARRGPLSNAR 60
MA +DMSLDDIIK + GP+ N R
Sbjct: 1 MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVSRGG-GPIRN-R 58
Query: 61 PSSYTIAKS---------FRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPG 109
P+ A + R + P WQHDLF+ G +G+E G KL VSNL G
Sbjct: 59 PALARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGF--GGGAGVETGGKLLVSNLDFG 116
Query: 110 VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169
V++ DI+ELF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN V LDG+PM
Sbjct: 117 VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 176
Query: 170 KIEVVGTNAEI---PLQARVNVTGVNGRR 195
I++V + + P Q+ VN G+ R
Sbjct: 177 NIQLVTSQIDTQRRPAQS-VNRGGMTRNR 204
>UNIPROTKB|E9PB61 [details] [associations]
symbol:ALYREF "THO complex subunit 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC145207 InterPro:IPR025715 Pfam:PF13865 KO:K12881 CTD:10189
OMA:IRNRPAI RefSeq:NP_005773.3 UniGene:Hs.534385 DNASU:10189
GeneID:10189 KEGG:hsa:10189 HGNC:HGNC:19071 GenomeRNAi:10189
NextBio:38562 IPI:IPI00328840 ProteinModelPortal:E9PB61 SMR:E9PB61
IntAct:E9PB61 PRIDE:E9PB61 Ensembl:ENST00000505490 UCSC:uc002kbu.2
ArrayExpress:E9PB61 Bgee:E9PB61 Uniprot:E9PB61
Length = 264
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 75/209 (35%), Positives = 107/209 (51%)
Query: 1 MATHVDMSLDDIIKSRKKSEXXXXXXXXXXXXXXXXXXXXXXXXXXMTGAARRGPLSNAR 60
MA +DMSLDDIIK + GP+ N R
Sbjct: 8 MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGG-GPIRN-R 65
Query: 61 PSSYTIAKS---------FRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPG 109
P+ A + R + P WQHDLF+ G +G+E G KL VSNL G
Sbjct: 66 PAIARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGF--GGGAGVETGGKLLVSNLDFG 123
Query: 110 VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169
V++ DI+ELF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN V LDG+PM
Sbjct: 124 VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 183
Query: 170 KIEVVGTNAEI---PLQARVNVTGVNGRR 195
I++V + + P Q+ VN G+ R
Sbjct: 184 NIQLVTSQIDAQRRPAQS-VNRGGMTRNR 211
>UNIPROTKB|Q86V81 [details] [associations]
symbol:ALYREF "THO complex subunit 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000346 "transcription export complex" evidence=IDA]
[GO:0046784 "intronless viral mRNA export from host nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005654 GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC145207 GO:GO:0000398
GO:GO:0071013 Reactome:REACT_1788 GO:GO:0006369 InterPro:IPR025715
Pfam:PF13865 GO:GO:0031124 Reactome:REACT_78 GO:GO:0000346
GO:GO:0046784 KO:K12881 eggNOG:NOG316507 HOGENOM:HOG000239962
HOVERGEN:HBG054806 CTD:10189 EMBL:BC052302 EMBL:AF047002
IPI:IPI01010794 RefSeq:NP_005773.3 UniGene:Hs.534385 PDB:3ULH
PDBsum:3ULH ProteinModelPortal:Q86V81 SMR:Q86V81 DIP:DIP-32711N
IntAct:Q86V81 MINT:MINT-5001811 STRING:Q86V81 PhosphoSite:Q86V81
DMDM:48429165 PaxDb:Q86V81 PRIDE:Q86V81 DNASU:10189
Ensembl:ENST00000331204 GeneID:10189 KEGG:hsa:10189
GeneCards:GC17M079849 HGNC:HGNC:19071 HPA:CAB016281 HPA:HPA019799
MIM:604171 neXtProt:NX_Q86V81 PharmGKB:PA134925107
InParanoid:Q86V81 GenomeRNAi:10189 NextBio:38562 PMAP-CutDB:Q86V81
ArrayExpress:Q86V81 Bgee:Q86V81 CleanEx:HS_THOC4
Genevestigator:Q86V81 GermOnline:ENSG00000183684 Uniprot:Q86V81
Length = 257
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 75/209 (35%), Positives = 107/209 (51%)
Query: 1 MATHVDMSLDDIIKSRKKSEXXXXXXXXXXXXXXXXXXXXXXXXXXMTGAARRGPLSNAR 60
MA +DMSLDDIIK + GP+ N R
Sbjct: 1 MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGG-GPIRN-R 58
Query: 61 PSSYTIAKS---------FRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPG 109
P+ A + R + P WQHDLF+ G +G+E G KL VSNL G
Sbjct: 59 PAIARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGF--GGGAGVETGGKLLVSNLDFG 116
Query: 110 VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169
V++ DI+ELF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN V LDG+PM
Sbjct: 117 VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 176
Query: 170 KIEVVGTNAEI---PLQARVNVTGVNGRR 195
I++V + + P Q+ VN G+ R
Sbjct: 177 NIQLVTSQIDAQRRPAQS-VNRGGMTRNR 204
>FB|FBgn0010774 [details] [associations]
symbol:Ref1 "RNA and export factor binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0003713 "transcription
coactivator activity" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0031965 "nuclear membrane"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005654 GO:GO:0000166
GO:GO:0031965 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0003713
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR025715
Pfam:PF13865 KO:K12881 HSSP:O08583 eggNOG:NOG316507
GeneTree:ENSGT00410000025615 OMA:IRNRPAI ChiTaRS:ALYREF
EMBL:AF172637 RefSeq:NP_651968.1 UniGene:Dm.3104 SMR:Q9V3E7
IntAct:Q9V3E7 MINT:MINT-318070 STRING:Q9V3E7
EnsemblMetazoa:FBtr0081642 GeneID:44029 KEGG:dme:Dmel_CG1101
UCSC:CG1101-RA CTD:44029 FlyBase:FBgn0010774 InParanoid:Q9V3E7
OrthoDB:EOG470S0M GenomeRNAi:44029 NextBio:836635 Uniprot:Q9V3E7
Length = 266
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 67/205 (32%), Positives = 104/205 (50%)
Query: 1 MATHVDMSLDDIIKS---RKKSEXXX--------XXXXXXXXXXXXXXXXXXXXXXXMTG 49
M ++MSLDDIIKS +KK + G
Sbjct: 1 MVDKIEMSLDDIIKSTRSQKKPQAARGGPGGARKTGGQQRFAGGARRGGANAGGSPRKPG 60
Query: 50 AARRGPLSNARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPG 109
+ +GP + AK R N W+HD+++ R A + G T+L V NL G
Sbjct: 61 SVLKGPRGGVAAGAVQKAKFPRGDVNSAWKHDMYDGPKRGA-VGGGSGPTRLIVGNLDYG 119
Query: 110 VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169
V+N DI+ELF++ G +K+ A+H+D++GR G+A+V++ RR+DA A+K+Y+ V LDG+PM
Sbjct: 120 VSNTDIKELFNDFGPIKKAAVHYDRSGRSLGTADVIFERRADALKAIKQYHGVPLDGRPM 179
Query: 170 KIEVVGTNAEIPLQARVNVTGVNGR 194
I++ ++ + L V T V R
Sbjct: 180 TIQLAVSDVAV-LTRPVAATDVKRR 203
>RGD|1594679 [details] [associations]
symbol:Thoc4 "THO complex 4" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000346
"transcription export complex" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0046784 "intronless viral mRNA export
from host nucleus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1594679
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473948
KO:K12881 GeneTree:ENSGT00410000025615 IPI:IPI00768839
RefSeq:NP_001103072.1 UniGene:Rn.6994 Ensembl:ENSRNOT00000054955
GeneID:690585 KEGG:rno:690585 CTD:690585 NextBio:741240
Uniprot:D3ZXH7
Length = 189
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 64/176 (36%), Positives = 89/176 (50%)
Query: 1 MATHVDMSLDDIIKSRKKSEXXXXXXXXXXXXXXXXXXXXXXXXXXMTGAARRGPLSNAR 60
MA +DMSLDDIIK + GP+ N R
Sbjct: 1 MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGAVQAAARVNRGG-GPMRN-R 58
Query: 61 PSSYTIAKS---------FRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPG 109
P+ A + R + P WQHDLF+ G +G+E G KL VSNL G
Sbjct: 59 PAIARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGF--GGGAGVETGGKLLVSNLDFG 116
Query: 110 VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165
V++ DI+ELF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN V LD
Sbjct: 117 VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD 172
>DICTYBASE|DDB_G0285361 [details] [associations]
symbol:DDB_G0285361 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285361 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 KO:K12881
eggNOG:NOG316507 RefSeq:XP_638266.1 ProteinModelPortal:Q54NB4
IntAct:Q54NB4 STRING:Q54NB4 PRIDE:Q54NB4 EnsemblProtists:DDB0233771
GeneID:8625074 KEGG:ddi:DDB_G0285361 InParanoid:Q54NB4 OMA:ISNLHHA
Uniprot:Q54NB4
Length = 327
Score = 198 (74.8 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 34/74 (45%), Positives = 53/74 (71%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALK 157
G++L +SNLH ++ D++ LF +GE+K+ IH+D +GR G+ V+Y+R +DA AALK
Sbjct: 240 GSRLNISNLHHAISEADLKVLFDSLGEIKQIKIHYDHSGRSDGTGYVIYSRHNDAMAALK 299
Query: 158 RYNNVLLDGKPMKI 171
+YN LDG+ +KI
Sbjct: 300 KYNGAQLDGRTLKI 313
Score = 41 (19.5 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 6 DMSLDDIIKSRKKSE 20
D+SLD IK+ K S+
Sbjct: 3 DISLDQYIKNNKSSQ 17
>MGI|MGI:1921076 [details] [associations]
symbol:Poldip3 "polymerase (DNA-directed), delta interacting
protein 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1921076
GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0045727 GO:GO:0035145 CTD:84271
eggNOG:NOG268669 HOVERGEN:HBG053550 OMA:QVPQQKA EMBL:AK081139
EMBL:AK083924 EMBL:AK087446 EMBL:AL591952 EMBL:BC037652
EMBL:BC046505 EMBL:BC058225 IPI:IPI00229721 RefSeq:NP_848742.1
UniGene:Mm.23758 ProteinModelPortal:Q8BG81 SMR:Q8BG81 IntAct:Q8BG81
STRING:Q8BG81 PhosphoSite:Q8BG81 PaxDb:Q8BG81 PRIDE:Q8BG81
Ensembl:ENSMUST00000058793 GeneID:73826 KEGG:mmu:73826
GeneTree:ENSGT00390000018868 InParanoid:B2FDB4 OrthoDB:EOG4WSWBG
ChiTaRS:POLDIP3 NextBio:339143 Bgee:Q8BG81 Genevestigator:Q8BG81
GermOnline:ENSMUSG00000041815 Uniprot:Q8BG81
Length = 420
Score = 169 (64.5 bits), Expect = 8.4e-14, Sum P(2) = 8.4e-14
Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYA-IHFDKNGRPSGSAEVVYARRS 150
+S +E GTK+ V+NLHP VT +DI ELF G LKR +H P G AEVV+ ++
Sbjct: 274 LSPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH------P-GVAEVVFVKKD 325
Query: 151 DAFAALKRYNNVLLDGKPMK 170
DA A K+YNN LDG+PMK
Sbjct: 326 DAITAYKKYNNRCLDGQPMK 345
Score = 37 (18.1 bits), Expect = 8.4e-14, Sum P(2) = 8.4e-14
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 6 DMSLDDIIKSR 16
D+SLD++I+ R
Sbjct: 3 DLSLDELIRKR 13
>RGD|1311073 [details] [associations]
symbol:Poldip3 "polymerase (DNA-directed), delta interacting
protein 3" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0016607 "nuclear speck" evidence=IEA;ISO] [GO:0035145
"exon-exon junction complex" evidence=IEA;ISO] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1311073 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0045727 GO:GO:0035145 EMBL:CH473950 CTD:84271
OMA:QVPQQKA GeneTree:ENSGT00390000018868 OrthoDB:EOG4WSWBG
IPI:IPI00777510 RefSeq:NP_001123978.1 UniGene:Rn.3893
Ensembl:ENSRNOT00000055988 GeneID:315170 KEGG:rno:315170
UCSC:RGD:1311073 NextBio:668820 Uniprot:D4A2B0
Length = 420
Score = 169 (64.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYA-IHFDKNGRPSGSAEVVYARRS 150
+S +E GTK+ V+NLHP VT +DI ELF G LKR +H P G AEVV+ ++
Sbjct: 274 LSPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH------P-GVAEVVFVKKD 325
Query: 151 DAFAALKRYNNVLLDGKPMK 170
DA A K+YNN LDG+PMK
Sbjct: 326 DAITAYKKYNNRCLDGQPMK 345
Score = 36 (17.7 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 6 DMSLDDIIKSR 16
D+SLD++I+ R
Sbjct: 3 DISLDELIRKR 13
>UNIPROTKB|A7YW33 [details] [associations]
symbol:POLDIP3 "Polymerase (DNA-directed), delta
interacting protein 3" species:9913 "Bos taurus" [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0035145
"exon-exon junction complex" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0045727 GO:GO:0035145 CTD:84271
eggNOG:NOG268669 HOVERGEN:HBG053550 OMA:QVPQQKA
GeneTree:ENSGT00390000018868 OrthoDB:EOG4WSWBG HOGENOM:HOG000013117
EMBL:DAAA02014778 EMBL:BC134441 IPI:IPI00702003
RefSeq:NP_001096653.1 UniGene:Bt.10436 STRING:A7YW33
Ensembl:ENSBTAT00000021952 GeneID:512693 KEGG:bta:512693
InParanoid:A7YW33 NextBio:20870514 Uniprot:A7YW33
Length = 421
Score = 169 (64.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYA-IHFDKNGRPSGSAEVVYARRS 150
+S +E GTK+ V+NLHP VT +DI ELF G LKR +H P G AEVV+ ++
Sbjct: 274 LSPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH------P-GVAEVVFVKKD 325
Query: 151 DAFAALKRYNNVLLDGKPMK 170
DA A K+YNN LDG+PMK
Sbjct: 326 DAITAYKKYNNRCLDGQPMK 345
Score = 36 (17.7 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 6 DMSLDDIIKSR 16
D+SLD++I+ R
Sbjct: 3 DISLDELIRKR 13
>UNIPROTKB|F1PS15 [details] [associations]
symbol:POLDIP3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
CTD:84271 GeneTree:ENSGT00390000018868 EMBL:AAEX03007273
RefSeq:XP_531709.3 Ensembl:ENSCAFT00000001487 GeneID:474480
KEGG:cfa:474480 Uniprot:F1PS15
Length = 421
Score = 169 (64.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYA-IHFDKNGRPSGSAEVVYARRS 150
+S +E GTK+ V+NLHP VT +DI ELF G LKR +H P G AEVV+ ++
Sbjct: 274 LSPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH------P-GVAEVVFVKKD 325
Query: 151 DAFAALKRYNNVLLDGKPMK 170
DA A K+YNN LDG+PMK
Sbjct: 326 DAITAYKKYNNRCLDGQPMK 345
Score = 36 (17.7 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 6 DMSLDDIIKSR 16
D+SLD++I+ R
Sbjct: 3 DISLDELIRKR 13
>UNIPROTKB|Q9BY77 [details] [associations]
symbol:POLDIP3 "Polymerase delta-interacting protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0035145 "exon-exon junction
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 EMBL:Z93241
EMBL:AY422990 EMBL:AB055760 EMBL:AL160111 EMBL:AL160112
EMBL:CR456456 EMBL:AK291623 EMBL:AK291774 EMBL:BC049840
EMBL:BC056912 EMBL:BC095411 EMBL:DQ887818 IPI:IPI00440688
IPI:IPI00440689 RefSeq:NP_115687.2 RefSeq:NP_835237.1
UniGene:Hs.741181 ProteinModelPortal:Q9BY77 SMR:Q9BY77
IntAct:Q9BY77 STRING:Q9BY77 PhosphoSite:Q9BY77 DMDM:50403796
PaxDb:Q9BY77 PRIDE:Q9BY77 DNASU:84271 Ensembl:ENST00000252115
Ensembl:ENST00000348657 GeneID:84271 KEGG:hsa:84271 UCSC:uc003bcu.3
UCSC:uc003bcv.3 CTD:84271 GeneCards:GC22M042979 HGNC:HGNC:23782
HPA:HPA018419 MIM:611520 neXtProt:NX_Q9BY77 PharmGKB:PA134899124
eggNOG:NOG268669 HOVERGEN:HBG053550 InParanoid:Q9BY77 OMA:QVPQQKA
PhylomeDB:Q9BY77 GenomeRNAi:84271 NextBio:73832 PMAP-CutDB:Q9BY77
ArrayExpress:Q9BY77 Bgee:Q9BY77 CleanEx:HS_POLDIP3
Genevestigator:Q9BY77 GermOnline:ENSG00000100227 Uniprot:Q9BY77
Length = 421
Score = 169 (64.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYA-IHFDKNGRPSGSAEVVYARRS 150
+S +E GTK+ V+NLHP VT +DI ELF G LKR +H P G AEVV+ ++
Sbjct: 274 LSPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH------P-GVAEVVFVKKD 325
Query: 151 DAFAALKRYNNVLLDGKPMK 170
DA A K+YNN LDG+PMK
Sbjct: 326 DAITAYKKYNNRCLDGQPMK 345
Score = 36 (17.7 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 6 DMSLDDIIKSR 16
D+SLD++I+ R
Sbjct: 3 DISLDELIRKR 13
>UNIPROTKB|E2RT45 [details] [associations]
symbol:POLDIP3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:QVPQQKA GeneTree:ENSGT00390000018868 EMBL:AAEX03007273
Ensembl:ENSCAFT00000001488 NextBio:20850486 Uniprot:E2RT45
Length = 439
Score = 169 (64.5 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYA-IHFDKNGRPSGSAEVVYARRS 150
+S +E GTK+ V+NLHP VT +DI ELF G LKR +H P G AEVV+ ++
Sbjct: 292 LSPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH------P-GVAEVVFVKKD 343
Query: 151 DAFAALKRYNNVLLDGKPMK 170
DA A K+YNN LDG+PMK
Sbjct: 344 DAITAYKKYNNRCLDGQPMK 363
Score = 36 (17.7 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 6 DMSLDDIIKSR 16
D+SLD++I+ R
Sbjct: 20 DISLDELIRKR 30
>UNIPROTKB|Q5F4B6 [details] [associations]
symbol:POLDIP3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0035145 "exon-exon junction
complex" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045727
GO:GO:0035145 CTD:84271 eggNOG:NOG268669 HOVERGEN:HBG053550
OMA:QVPQQKA GeneTree:ENSGT00390000018868 OrthoDB:EOG4WSWBG
HOGENOM:HOG000013117 EMBL:AADN02006041 EMBL:AJ851384
IPI:IPI00600024 RefSeq:NP_001012832.1 UniGene:Gga.13560
STRING:Q5F4B6 Ensembl:ENSGALT00000019356 GeneID:417974
KEGG:gga:417974 InParanoid:Q5F4B6 NextBio:20821199 Uniprot:Q5F4B6
Length = 418
Score = 167 (63.8 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 39/74 (52%), Positives = 48/74 (64%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYA-IHFDKNGRPSGSAEVVYARRSDAFAAL 156
GTK+ V+NLHP VT +DI ELF G LKR +H P G AEVV+ ++ DA A
Sbjct: 277 GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH------P-GVAEVVFVKKEDAITAY 329
Query: 157 KRYNNVLLDGKPMK 170
K+YNN LDG+PMK
Sbjct: 330 KKYNNRCLDGQPMK 343
Score = 37 (18.1 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 6 DMSLDDIIKSR 16
D+SLD++I+ R
Sbjct: 3 DLSLDELIRKR 13
>FB|FBgn0032439 [details] [associations]
symbol:Ref2 "RNA and export factor binding protein 2"
species:7227 "Drosophila melanogaster" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0006406 "mRNA export from nucleus" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:O08583
EMBL:AJ459410 ProteinModelPortal:Q8IFW5 SMR:Q8IFW5 STRING:Q8IFW5
PRIDE:Q8IFW5 FlyBase:FBgn0032439 InParanoid:Q8IFW5
OrthoDB:EOG470S0C Bgee:Q8IFW5 Uniprot:Q8IFW5
Length = 220
Score = 146 (56.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 27/76 (35%), Positives = 51/76 (67%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158
T + V NL GV +DDI ELF++ G +++ +H+D++G G+A + + R +AF +++
Sbjct: 75 TLVMVCNLDYGVDDDDIMELFNQDGVVEKGFVHYDRDGNSLGTAHLSFKYREEAFQIIEQ 134
Query: 159 YNNVLLDGKPMKIEVV 174
++ V LDG+ +K+ +V
Sbjct: 135 FHGVRLDGRRLKLHLV 150
Score = 43 (20.2 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 1 MATHVDMSLDDIIKSR 16
M+ + MSLDDIIK +
Sbjct: 1 MSDKMKMSLDDIIKMK 16
>ASPGD|ASPL0000065384 [details] [associations]
symbol:AN7706 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001304 EMBL:AACD01000131 InterPro:IPR025715 Pfam:PF13865
KO:K12881 eggNOG:NOG316507 OrthoDB:EOG4DV8WK RefSeq:XP_680975.1
ProteinModelPortal:Q5AVH4 EnsemblFungi:CADANIAT00000838
GeneID:2869696 KEGG:ani:AN7706.2 HOGENOM:HOG000174259 OMA:LHYDITE
Uniprot:Q5AVH4
Length = 328
Score = 161 (61.7 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 42/143 (29%), Positives = 67/143 (46%)
Query: 53 RGPLSNARPSSYTIAKSFRRTR---NFPWQHDLFEDSLRAAGISG--------------- 94
RGP + R S+ + K +R R + W HD +ED G
Sbjct: 22 RGPRNQGRRSN-GVKKPYRDERVDLDLDWVHDKYEDDRDTRPSRGGRRPRVDRYSPSPDR 80
Query: 95 -IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAF 153
GT+L + NLH +T D+ ELFS IG + ++ +D+ GR G A V Y+R +DA
Sbjct: 81 SASAGTRLRIENLHYDITETDLEELFSRIGPISNVSLVYDRAGRSEGVAYVTYSRYNDAK 140
Query: 154 AALKRYNNVLLDGKPMKIEVVGT 176
A+ ++ G+P++I + +
Sbjct: 141 TAIAEFDGANAKGQPIRISITSS 163
Score = 35 (17.4 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 5 VDMSLDDIIKSRKKSE 20
+D SLD+II R + +
Sbjct: 1 MDRSLDEIIAERPQRQ 16
>POMBASE|SPBC1D7.04 [details] [associations]
symbol:mlo3 "RNA binding protein Mlo3" species:4896
"Schizosaccharomyces pombe" [GO:0000346 "transcription export
complex" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IGI;IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPBC1D7.04
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 eggNOG:COG0724
GO:GO:0016973 GO:GO:0000346 EMBL:L42551 PIR:T39861
RefSeq:NP_595715.1 ProteinModelPortal:Q09330 STRING:Q09330
EnsemblFungi:SPBC1D7.04.1 GeneID:2540565 KEGG:spo:SPBC1D7.04
HOGENOM:HOG000177542 KO:K12881 OMA:KGIATII OrthoDB:EOG4QNR5V
NextBio:20801691 Uniprot:Q09330
Length = 199
Score = 144 (55.7 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 93 SGIEVGTKLYVSNLHPGVTNDDIRELF-SEIGELKRYAIHFDKNGRPSGSAEVVYARRSD 151
S I +K+ VSNL VT ++ELF IG KR ++ + NGR G A ++++R D
Sbjct: 49 SVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGD 108
Query: 152 AFAALKRYNNVLLDG-KPMKIEVV 174
A A ++Y L+DG + MK+E++
Sbjct: 109 ATRAYEQYEGRLVDGTRKMKVEII 132
Score = 41 (19.5 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 1 MATHVDMSLDDIIKSRKK 18
M+ +D SLD II S+ K
Sbjct: 1 MSMELDQSLDAIIASKPK 18
>UNIPROTKB|G4MKS1 [details] [associations]
symbol:MGG_06668 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001231 KO:K12881 RefSeq:XP_003709373.1
ProteinModelPortal:G4MKS1 EnsemblFungi:MGG_06668T0 GeneID:2684841
KEGG:mgr:MGG_06668 Uniprot:G4MKS1
Length = 258
Score = 134 (52.2 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 34/94 (36%), Positives = 50/94 (53%)
Query: 90 AGISGIEVGTKLYVSNLHPGVTNDDIRELFSE-IGELKRYAIHFDKNGRPSGSAEVVYAR 148
A SG +K+ VSN+ V+ I+E F + +G +KR I + G G A V +A
Sbjct: 61 AKASGAPGTSKVVVSNMPKDVSEAQIKEYFGQSVGPVKRVEISYGPGGVSRGIATVTFAH 120
Query: 149 RSDAFAALKRYNNVLLDGKPMKIEVVGTNAE-IP 181
A A N +L+D KP+K+EVV +A+ IP
Sbjct: 121 ADGASKAFAELNGLLIDNKPVKVEVVVASADQIP 154
Score = 40 (19.1 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 2 ATHVDMSLDDIIKSRKKS 19
A +D SLD+I+ S++++
Sbjct: 3 AGKLDKSLDEIVSSQRRT 20
>WB|WBGene00000122 [details] [associations]
symbol:aly-3 species:6239 "Caenorhabditis elegans"
[GO:0040011 "locomotion" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0003676 InterPro:IPR025715 Pfam:PF13865
EMBL:Z68507 KO:K12881 HSSP:O08583 eggNOG:NOG316507
HOGENOM:HOG000239962 GeneTree:ENSGT00680000100596 PIR:T23797
RefSeq:NP_001076697.1 ProteinModelPortal:Q21559 SMR:Q21559
DIP:DIP-25095N IntAct:Q21559 MINT:MINT-1102492 STRING:Q21559
PaxDb:Q21559 PRIDE:Q21559 EnsemblMetazoa:M18.7a.1
EnsemblMetazoa:M18.7a.2 GeneID:178157 KEGG:cel:CELE_M18.7
UCSC:M18.7a.1 CTD:178157 WormBase:M18.7a InParanoid:Q21559
OMA:DFGNRSR NextBio:899954 ArrayExpress:Q21559 Uniprot:Q21559
Length = 240
Score = 129 (50.5 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 41/132 (31%), Positives = 70/132 (53%)
Query: 49 GAARRGPLSNARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLY---VSN 105
G ARRG N RP+ RR+ DL D+++ GIS +K+ +SN
Sbjct: 31 GGARRG---NTRPTGLP-----RRSGGSGGWKDL--DAVQNHGISSRGNDSKVIRVNISN 80
Query: 106 LHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165
L P V + D+ ELF + L +++F+++G G+ ++ +R DA +++++ V LD
Sbjct: 81 LAPTVISSDLEELFGDY-RLSSVSVNFNEHGDSLGTGDISLTKR-DAERLVQKFSGVALD 138
Query: 166 GKPMKIEVVGTN 177
GK MK V+ ++
Sbjct: 139 GKIMKFAVIDSS 150
Score = 53 (23.7 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 12/17 (70%), Positives = 16/17 (94%)
Query: 2 ATHVDMSLDDII-KSRK 17
AT+VD+SL+DII K+RK
Sbjct: 4 ATNVDLSLEDIISKTRK 20
>UNIPROTKB|B4DMM2 [details] [associations]
symbol:POLDIP3 "Polymerase delta-interacting protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:Z93241 UniGene:Hs.741181 HGNC:HGNC:23782 EMBL:AK297532
IPI:IPI00940039 SMR:B4DMM2 STRING:B4DMM2 Ensembl:ENST00000451060
Uniprot:B4DMM2
Length = 186
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 38/76 (50%), Positives = 48/76 (63%)
Query: 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYA-IHFDKNGRPSGSAEVVYARRS 150
+S +E GTK+ V+NLHP VT +DI ELF G LKR +H P G AEVV+ ++
Sbjct: 118 LSPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH------P-GVAEVVFVKKD 169
Query: 151 DAFAALKRYNNVLLDG 166
DA A K+YNN LDG
Sbjct: 170 DAITAYKKYNNRCLDG 185
>UNIPROTKB|F1SJQ4 [details] [associations]
symbol:POLDIP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045727
GO:GO:0035145 OMA:QVPQQKA GeneTree:ENSGT00390000018868
EMBL:CU928642 Ensembl:ENSSSCT00000000041 Uniprot:F1SJQ4
Length = 338
Score = 152 (58.6 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 38/77 (49%), Positives = 49/77 (63%)
Query: 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYA-IHFDKNGRPSGSAEVVYARRS 150
+S +E GTK+ V+NLHP VT +DI ELF G LKR +H P G AEVV+ ++
Sbjct: 253 LSPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH------P-GVAEVVFVKKD 304
Query: 151 DAFAALKRYNNVLLDGK 167
DA A K+YNN LDG+
Sbjct: 305 DAITAYKKYNNRCLDGE 321
>TAIR|locus:2167649 [details] [associations]
symbol:CBP20 "CAP-binding protein 20" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000339 "RNA cap
binding" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0005845 "mRNA cap binding complex" evidence=TAS]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA;IMP] [GO:0031053 "primary miRNA processing"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] [GO:0009086 "methionine biosynthetic
process" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AB005239 GO:GO:0005845 eggNOG:COG0724
GO:GO:0006370 GO:GO:0031053 GO:GO:0000339 HOGENOM:HOG000217589
PANTHER:PTHR18847 GO:GO:0000394 EMBL:AF140219 EMBL:BT004813
EMBL:AK227850 IPI:IPI00549008 RefSeq:NP_001078705.1
RefSeq:NP_199233.1 UniGene:At.23549 HSSP:P52298
ProteinModelPortal:Q9XFD1 SMR:Q9XFD1 IntAct:Q9XFD1 STRING:Q9XFD1
PaxDb:Q9XFD1 PRIDE:Q9XFD1 EnsemblPlants:AT5G44200.1
EnsemblPlants:AT5G44200.2 GeneID:834443 KEGG:ath:AT5G44200
TAIR:At5g44200 InParanoid:Q9XFD1 KO:K12883 OMA:YISGTIL
PhylomeDB:Q9XFD1 ProtClustDB:CLSN2687230 Genevestigator:Q9XFD1
Uniprot:Q9XFD1
Length = 257
Score = 130 (50.8 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 31/102 (30%), Positives = 55/102 (53%)
Query: 72 RTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIH 131
R R F + F+++LRA+ T +Y+ N+ T + + ELFS GE+K+ +
Sbjct: 15 RDRRFSGTQEEFDEALRAS--------TTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMG 66
Query: 132 FDKNGR-PSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172
DKN + P G V++ R D A+K + +LD +P++++
Sbjct: 67 LDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVD 108
>WB|WBGene00000121 [details] [associations]
symbol:aly-2 species:6239 "Caenorhabditis elegans"
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0000003 InterPro:IPR025715 Pfam:PF13865
EMBL:Z82266 KO:K12881 HSSP:O08583 eggNOG:NOG316507
HOGENOM:HOG000239962 GeneTree:ENSGT00680000100596 PIR:T21298
RefSeq:NP_501594.1 ProteinModelPortal:O62183 SMR:O62183
STRING:O62183 PaxDb:O62183 EnsemblMetazoa:F23B2.6 GeneID:177738
KEGG:cel:CELE_F23B2.6 UCSC:F23B2.6 CTD:177738 WormBase:F23B2.6
InParanoid:O62183 OMA:QVRINIS NextBio:898176 Uniprot:O62183
Length = 227
Score = 111 (44.1 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 25/86 (29%), Positives = 48/86 (55%)
Query: 89 AAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR 148
A G S ++ +SNL V + D++ELF L + +++F++NG +G+ ++ +
Sbjct: 70 AGGSSNDNKQVRINISNLAETVISSDLQELFGAFN-LHKVSVNFNENGGAAGTGDITL-K 127
Query: 149 RSDAFAALKRYNNVLLDGKPMKIEVV 174
+ DA ++++ V LDGK M V+
Sbjct: 128 KYDADRLIQKFAGVALDGKVMHFAVI 153
Score = 53 (23.7 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 2 ATHVDMSLDDIIKSRKKSE 20
AT +DMSL DII + +K++
Sbjct: 4 ATAIDMSLSDIISTNRKNK 22
>TAIR|locus:2075860 [details] [associations]
symbol:U11/U12-31K "U11/U12-31K" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0051302
"regulation of cell division" evidence=IMP] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 EMBL:CP002686 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011560
GO:GO:0030529 Gene3D:4.10.60.10 GO:GO:0000398 GO:GO:0032502
GO:GO:0051302 HSSP:O08583 KO:K13154 OMA:YRYSSVA EMBL:BT015938
EMBL:BT021922 IPI:IPI00529628 RefSeq:NP_187651.1 UniGene:At.39936
ProteinModelPortal:Q9CAE4 SMR:Q9CAE4 STRING:Q9CAE4
EnsemblPlants:AT3G10400.1 GeneID:820203 KEGG:ath:AT3G10400
TAIR:At3g10400 InParanoid:Q9CAE4 PhylomeDB:Q9CAE4
ProtClustDB:CLSN2684009 Genevestigator:Q9CAE4 Uniprot:Q9CAE4
Length = 261
Score = 128 (50.1 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 32/96 (33%), Positives = 50/96 (52%)
Query: 84 EDSLRAAGISGIEVG-TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPS-GS 141
+ S G G+ + LYVSNL +TN DI LFS G++ R + D++ R S G
Sbjct: 41 KSSAPGGGSGGLAPSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGV 100
Query: 142 AEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177
A V+Y R DA A + + +L+G+ + + + N
Sbjct: 101 AFVLYVSREDAAKAARSMDAKILNGRKLTVSIAADN 136
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 29/92 (31%), Positives = 50/92 (54%)
Query: 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAA 155
+ +L+VS L T+ +R+LFS G++K + D + RP G + + DA A
Sbjct: 5 ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64
Query: 156 LKRYNNVLLDGKPMKIEVVGTNAEIPLQARVN 187
LK + ++DG+ + +EV NAE ++A +N
Sbjct: 65 LKSLDGKIVDGRLIFVEVA-KNAE-EVRAGIN 94
>WB|WBGene00004387 [details] [associations]
symbol:rnp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0009790 "embryo development" evidence=IMP] [GO:0001703
"gastrulation with mouth forming first" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0005737 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0003723 GO:GO:0006396 GO:GO:0040035 GO:GO:0040022 HSSP:Q9V535
eggNOG:COG0724 GeneTree:ENSGT00550000074641 GO:GO:0001703
EMBL:Z32683 HOGENOM:HOG000183826 KO:K12876 PIR:F88427
RefSeq:NP_497891.1 ProteinModelPortal:Q21832 SMR:Q21832
DIP:DIP-26500N IntAct:Q21832 MINT:MINT-1100537 STRING:Q21832
PaxDb:Q21832 EnsemblMetazoa:R07E5.14.1 EnsemblMetazoa:R07E5.14.2
EnsemblMetazoa:R07E5.14.3 GeneID:175572 KEGG:cel:CELE_R07E5.14
UCSC:R07E5.14.2 CTD:175572 WormBase:R07E5.14 InParanoid:Q21832
OMA:NIHEEAT NextBio:888726 Uniprot:Q21832
Length = 142
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 36/121 (29%), Positives = 64/121 (52%)
Query: 56 LSNA-RPSSYTIAKSFRRTRNFPWQHDLF-EDSLRAAGISGIEV-GTKLYVSNLHPGVTN 112
++NA R +A+S R R +D+ E+S +G V G ++V+N+H T
Sbjct: 12 VANAERSRGRGLAQSRNRERI---TYDVVDEESSATSGAPQRSVEGWIVFVTNIHEEATE 68
Query: 113 DDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171
DD+ + FSE G++K ++ D+ G G A V Y + +A A+ + N+ L G+ +K+
Sbjct: 69 DDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNVKV 128
Query: 172 E 172
+
Sbjct: 129 D 129
>FB|FBgn0030956 [details] [associations]
symbol:CG18259 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000018868 HSSP:O08583 OrthoDB:EOG40CFZS
EMBL:BT100285 RefSeq:NP_573324.1 UniGene:Dm.19742 SMR:Q9VWQ6
IntAct:Q9VWQ6 MINT:MINT-304999 STRING:Q9VWQ6
EnsemblMetazoa:FBtr0074661 GeneID:32866 KEGG:dme:Dmel_CG18259
UCSC:CG18259-RA FlyBase:FBgn0030956 InParanoid:Q9VWQ6
GenomeRNAi:32866 NextBio:780786 Uniprot:Q9VWQ6
Length = 474
Score = 121 (47.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 33/86 (38%), Positives = 48/86 (55%)
Query: 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDA 152
S + G +L VSNLH VT DIRELFS+IG ++ + RP G+AEV+Y A
Sbjct: 360 SNTKDGYRLLVSNLHTNVTTADIRELFSDIGP-----VYDARVVRP-GTAEVIYKSLEHA 413
Query: 153 FAALKRYNNVLLDGKPMKIEVVGTNA 178
A+ Y++ D +PM +V ++
Sbjct: 414 EKAVDTYHHRQFDDQPMHCVLVNPHS 439
Score = 41 (19.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 5 VDMSLDDIIKSRKKSE 20
+D+SLD+II+ RK+ +
Sbjct: 3 IDLSLDEIIE-RKRGQ 17
>FB|FBgn0030959 [details] [associations]
symbol:CG6961 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:2001020 "regulation of response to DNA damage
stimulus" evidence=IGI] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:NOG268669
GeneTree:ENSGT00390000018868 HSSP:O08583 EMBL:AY061430
RefSeq:NP_573325.1 UniGene:Dm.19168 SMR:Q9VWQ3 STRING:Q9VWQ3
EnsemblMetazoa:FBtr0074660 GeneID:32869 KEGG:dme:Dmel_CG6961
UCSC:CG6961-RA FlyBase:FBgn0030959 InParanoid:Q9VWQ3 OMA:NDIGPMY
OrthoDB:EOG40CFZS GenomeRNAi:32869 NextBio:780796 Uniprot:Q9VWQ3
Length = 474
Score = 121 (47.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 33/86 (38%), Positives = 48/86 (55%)
Query: 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDA 152
S + G +L VSNLH VT DIRELFS+IG ++ + RP G+AEV+Y A
Sbjct: 360 SNTKDGYRLLVSNLHTNVTTADIRELFSDIGP-----VYDARVVRP-GTAEVIYKSLEHA 413
Query: 153 FAALKRYNNVLLDGKPMKIEVVGTNA 178
A+ Y++ D +PM +V ++
Sbjct: 414 EKAVDTYHHRQFDDQPMHCVLVNPHS 439
Score = 41 (19.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 5 VDMSLDDIIKSRKKSE 20
+D+SLD+II+ RK+ +
Sbjct: 3 IDLSLDEIIE-RKRGQ 17
>UNIPROTKB|B5G279 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:59729 "Taeniopygia guttata" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:DQ215986 RefSeq:NP_001232044.1
UniGene:Tgu.10927 ProteinModelPortal:B5G279 STRING:B5G279
GeneID:100190722 KEGG:tgu:100190722 Uniprot:B5G279
Length = 168
Score = 117 (46.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 37/118 (31%), Positives = 57/118 (48%)
Query: 56 LSNARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDI 115
LS SY +R ++F L E SL+ + + LYV NL T + I
Sbjct: 9 LSGLNSDSYCEISQYR-DQHFRGSRQLQEKSLK--------ISSTLYVGNLSFYTTEEQI 59
Query: 116 RELFSEIGELKRYAIHFDKNGR-PSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172
+ELFS+ G++KR + DK + P G V Y R+DA A++ N LD + ++ +
Sbjct: 60 QELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAMRFINGTRLDDRIIRTD 117
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 127 (49.8 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 30/90 (33%), Positives = 46/90 (51%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALK 157
G LYV NL VT++ +RELF+E G + + D +G GS V ++ S+A L
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLN 386
Query: 158 RYNNVLLDGKPMKIEVVGTNAE--IPLQAR 185
N ++ GKP+ + + E LQA+
Sbjct: 387 EMNGKMVGGKPLYVALAQRKEERRAKLQAQ 416
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAALKR 158
K+YV +L VT D+++ F + GE++ + D+ GR G A + Y + A A+ +
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 159 YNNVLLDGKPMKIEVVGTN 177
N + L G+ +++ + N
Sbjct: 79 ANGIDLQGRKIRVNIAREN 97
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAALKR 158
K+YV +L VT D+++ F + GE++ + D+ GR G A + Y + A A+ +
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 159 YNNVLLDGKPMKIEVVGTN 177
N + L G+ +++ + N
Sbjct: 79 ANGIDLQGRKIRVNIAREN 97
>UNIPROTKB|Q5ZKR5 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:YRTDYDV EMBL:AJ720019 IPI:IPI00603887 RefSeq:NP_001006430.1
UniGene:Gga.6356 ProteinModelPortal:Q5ZKR5 SMR:Q5ZKR5
Ensembl:ENSGALT00000009239 GeneID:422214 KEGG:gga:422214
InParanoid:Q5ZKR5 NextBio:20824880 Uniprot:Q5ZKR5
Length = 168
Score = 114 (45.2 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR-PSGSAEVVYARRSDAF 153
+++ + LYV NL T + I+ELFS+ G++KR + DK + P G V Y R+DA
Sbjct: 39 LKISSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAE 98
Query: 154 AALKRYNNVLLDGKPMKIE 172
A++ N LD + ++ +
Sbjct: 99 HAMRFINGTRLDDRIVRTD 117
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 105 (42.0 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 26/82 (31%), Positives = 41/82 (50%)
Query: 91 GISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRS 150
G + E L+V NL VT + + ELF + G + + I DK+G+P A V +
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 151 DAFAALKRYNNVLLDGKPMKIE 172
A+ N + L G+P+KI+
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKIQ 83
>ASPGD|ASPL0000076347 [details] [associations]
symbol:AN4505 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 EMBL:BN001303
EMBL:AACD01000078 HOGENOM:HOG000183826 KO:K12876 eggNOG:NOG246776
OrthoDB:EOG4M9523 RefSeq:XP_662109.1 ProteinModelPortal:Q5B4M5
SMR:Q5B4M5 STRING:Q5B4M5 EnsemblFungi:CADANIAT00005939
GeneID:2872307 KEGG:ani:AN4505.2 OMA:IEGWIII Uniprot:Q5B4M5
Length = 158
Score = 111 (44.1 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 27/111 (24%), Positives = 54/111 (48%)
Query: 89 AAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYA 147
A + IE G + +N+H + +D+ +LF+E GE+K ++++ D+ G G A + Y+
Sbjct: 33 AVAVRSIE-GWIIIATNIHEEASEEDVTDLFAEYGEIKNFSLNLDRRTGYVKGYALIEYS 91
Query: 148 RRSDAFAALKRYNNVLLDGKPMKIEVVGTNAEIPLQARVNVTGVNGRRKRT 198
+A A+K N L + ++++ + + G G R R+
Sbjct: 92 TLPEAAEAIKELNGTKLLDQTIEVDYAFVRPPPSNKGKSGGRGGRGGRNRS 142
>ASPGD|ASPL0000011897 [details] [associations]
symbol:AN3739 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001302
ProteinModelPortal:C8V7B0 EnsemblFungi:CADANIAT00004984
HOGENOM:HOG000217892 OMA:ERAEIQY Uniprot:C8V7B0
Length = 484
Score = 123 (48.4 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDA 152
SG E +YV NL NDD+ +LFS IG+++R I ++ NGR G+ V + A
Sbjct: 375 SGGEKSNTIYVRNLPWSTCNDDLVDLFSTIGKVERAEIQYEPNGRSRGTGVVQFDNADTA 434
Query: 153 FAALKRYNNVLLDGKPMKIEVV 174
++ ++ G+P+ I V
Sbjct: 435 ETSIAKFTGYQYGGRPLGITFV 456
Score = 114 (45.2 bits), Expect = 0.00015, P = 0.00015
Identities = 31/100 (31%), Positives = 48/100 (48%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEI---GELKRYAIHFDKNGRPSGSAEVVYARRSDAFA 154
G +LYVSNL V D+++LF + G + R +H D +GRP GS V + DA
Sbjct: 221 GRQLYVSNLPFNVGWQDLKDLFRQAAQQGTVIRADVHTDASGRPKGSGIVAFESPDDARN 280
Query: 155 ALKRYNNVLLDGKPMKIEVVGTNAEIPLQARVNVTGVNGR 194
A++++N G+ +++ P R G GR
Sbjct: 281 AIQQFNGYDWQGRTLEVREDRFAGSGPGMGRGGYGGFGGR 320
>UNIPROTKB|F5GXV8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI00556348 ProteinModelPortal:F5GXV8 SMR:F5GXV8
Ensembl:ENST00000541475 ArrayExpress:F5GXV8 Bgee:F5GXV8
Uniprot:F5GXV8
Length = 149
Score = 107 (42.7 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 27/91 (29%), Positives = 44/91 (48%)
Query: 91 GISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRS 150
G + E L+V NL VT + + ELF + G + + I DK+G+P A V +
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 151 DAFAALKRYNNVLLDGKPMKIEVVGTNAEIP 181
A+ N + L G+P+KI+ ++ P
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKIQFRSGSSHAP 92
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 103 (41.3 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAA 155
+ T++YV NL P T+D +RE FS G + + D+ R G V Y+ S+A AA
Sbjct: 1 MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAA 60
Query: 156 LKRYNNVLLDGKPMKIEVVG 175
+ + L+G+ + +++ G
Sbjct: 61 VSGMDGKELNGRRVSVKLFG 80
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 101 (40.6 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAALKRY 159
+YV N T +++ FS IG++ I D+ GRP G A + +A A A+++
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 160 NNVLLDGKPMKIEV 173
N +G+P+++ +
Sbjct: 67 NGAEFNGRPLRVNL 80
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 118 (46.6 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 34/111 (30%), Positives = 56/111 (50%)
Query: 83 FEDSLRAAGISGIEVG-TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSG 140
+ED + A G ++G T L V+ L +T D++R LFS IGE++ + DK G G
Sbjct: 5 YEDHM-AEDCRG-DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLG 62
Query: 141 SAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAEIPLQARVNVTGV 191
V Y DA A+ N + L K +K+ ++E+ A + ++G+
Sbjct: 63 YGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGL 113
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 118 (46.6 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 34/111 (30%), Positives = 56/111 (50%)
Query: 83 FEDSLRAAGISGIEVG-TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSG 140
+ED + A G ++G T L V+ L +T D++R LFS IGE++ + DK G G
Sbjct: 32 YEDHM-AEDCRG-DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLG 89
Query: 141 SAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAEIPLQARVNVTGV 191
V Y DA A+ N + L K +K+ ++E+ A + ++G+
Sbjct: 90 YGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGL 140
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 99 (39.9 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAAL 156
G +YV N T DD+ FS+ G + I D+ GRP G A V + + A A+
Sbjct: 3 GFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAV 62
Query: 157 KRYNNVLLDGKPMKIEV 173
++N V +G+ +++ +
Sbjct: 63 DQFNGVDFNGRALRVNL 79
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 99 (39.9 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAAL 156
G +YV N T DD+ FS+ G + I D+ GRP G A V + + A A+
Sbjct: 3 GFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAV 62
Query: 157 KRYNNVLLDGKPMKIEV 173
++N V +G+ +++ +
Sbjct: 63 DQFNGVDFNGRALRVNL 79
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 120 (47.3 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158
+ LYV NL P ++++ ++E+FS G + + D NG GS V +A +A A+ +
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQ 377
Query: 159 YNNVLLDGKPMKIEVVGTNAE--IPLQAR 185
+ +++ KP+ + + + + LQA+
Sbjct: 378 LSGKMIESKPLYVAIAQRKEDRRVRLQAQ 406
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 117 (46.2 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALK 157
T LYV+NL +T+D + +F + G + + I DK GRP G A V Y +R +A A+
Sbjct: 211 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 270
Query: 158 RYNNVLLDG--KPMKIEV 173
NNV+ +G +P+ + +
Sbjct: 271 ALNNVIPEGGSQPLSVRL 288
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 118 (46.6 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 29/113 (25%), Positives = 56/113 (49%)
Query: 83 FEDSLRAAGISGIEVG---TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRP 138
+ + R +++G T L ++ L G+T +++R LF+ IGE++ + DK G+
Sbjct: 23 YTSTQRYCSAPNVDIGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQS 82
Query: 139 SGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAEIPLQARVNVTGV 191
G V Y R DA A+ +N + L K +K+ + + + + V+G+
Sbjct: 83 LGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGI 135
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 97 (39.2 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 21/75 (28%), Positives = 41/75 (54%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAAL 156
G +YV N+ T ++I F+ +G + I +D+ GRP G A V ++ + A A+
Sbjct: 5 GFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAV 64
Query: 157 KRYNNVLLDGKPMKI 171
++ N V +G+ +++
Sbjct: 65 EQLNGVAFNGRNLRV 79
>GENEDB_PFALCIPARUM|PFF0760w [details] [associations]
symbol:PFF0760w "RNA and export factor binding
protein, putative" species:5833 "Plasmodium falciparum" [GO:0003723
"RNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL844505 RefSeq:XP_966143.1
ProteinModelPortal:C6KSZ8 EnsemblProtists:PFF0760w:mRNA
GeneID:3885869 KEGG:pfa:PFF0760w EuPathDB:PlasmoDB:PF3D7_0615700
HOGENOM:HOG000281520 ProtClustDB:CLSZ2444924 Uniprot:C6KSZ8
Length = 156
Score = 106 (42.4 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 21/75 (28%), Positives = 46/75 (61%)
Query: 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY 159
++ +SNL ++ +D+ ELFS + ++ I++D R +G+A V+ +DA A+ +Y
Sbjct: 65 RVKISNLDYTISKNDLMELFSNVCKVVNAWINYDHTDRSNGTAVCVFENINDAQKAIDKY 124
Query: 160 NNVLLDGKPMKIEVV 174
+ ++G +K+E++
Sbjct: 125 DGSEIEGLSIKMEIL 139
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 115 (45.5 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 30/98 (30%), Positives = 50/98 (51%)
Query: 96 EVG-TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAF 153
++G T L V+ L +T D++R LFS IGE++ + DK G G V Y DA
Sbjct: 16 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75
Query: 154 AALKRYNNVLLDGKPMKIEVVGTNAEIPLQARVNVTGV 191
A+ N + L K +K+ ++E+ A + ++G+
Sbjct: 76 RAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGL 113
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 115 (45.5 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 30/98 (30%), Positives = 50/98 (51%)
Query: 96 EVG-TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAF 153
++G T L V+ L +T D++R LFS IGE++ + DK G G V Y DA
Sbjct: 16 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75
Query: 154 AALKRYNNVLLDGKPMKIEVVGTNAEIPLQARVNVTGV 191
A+ N + L K +K+ ++E+ A + ++G+
Sbjct: 76 RAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGL 113
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 115 (45.5 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 96 EVG-TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAF 153
++G T L V+ L +T D++R LFS IGE++ + DK G G V Y DA
Sbjct: 16 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAE 75
Query: 154 AALKRYNNVLLDGKPMKIEVVGTNAEIPLQARVNVTGV 191
A+ N + L K +K+ V ++E A + ++G+
Sbjct: 76 RAINTLNGLRLQSKTIKVSVARPSSESIKDANLYISGL 113
>WB|WBGene00000120 [details] [associations]
symbol:aly-1 species:6239 "Caenorhabditis elegans"
[GO:0040011 "locomotion" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0003676 InterPro:IPR025715 Pfam:PF13865
EMBL:Z68213 KO:K12881 HSSP:O08583 HOGENOM:HOG000239962
GeneTree:ENSGT00680000100596 PIR:T18807 RefSeq:NP_501588.1
ProteinModelPortal:Q17561 SMR:Q17561 IntAct:Q17561 STRING:Q17561
PaxDb:Q17561 EnsemblMetazoa:C01F6.5 GeneID:177735
KEGG:cel:CELE_C01F6.5 UCSC:C01F6.5 CTD:177735 WormBase:C01F6.5
eggNOG:NOG289866 InParanoid:Q17561 OMA:DSANIAN NextBio:898152
Uniprot:Q17561
Length = 223
Score = 112 (44.5 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 22/75 (29%), Positives = 49/75 (65%)
Query: 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY 159
++ +SNL V + D+R+LF+E +++ +++F+++G+P G+ +V +R A ++++
Sbjct: 73 RINLSNLAHTVHSGDLRQLFAEF-KIRNVSVNFNEHGKPVGTGDVTLPKRH-ADRLIQKF 130
Query: 160 NNVLLDGKPMKIEVV 174
V LDGK +K ++
Sbjct: 131 AGVSLDGKEIKFAII 145
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 115 (45.5 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 30/98 (30%), Positives = 50/98 (51%)
Query: 96 EVG-TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAF 153
++G T L V+ L +T D++R LFS IGE++ + DK G G V Y DA
Sbjct: 24 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 83
Query: 154 AALKRYNNVLLDGKPMKIEVVGTNAEIPLQARVNVTGV 191
A+ N + L K +K+ ++E+ A + ++G+
Sbjct: 84 RAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGL 121
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 109 (43.4 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALK 157
TKLYVS L T D +R+ F + G L + DK RP G A + Y +A A++
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136
Query: 158 RYNNVLLDGKPMKIEVVGTNAEI 180
+ LDG+ + +E T +++
Sbjct: 137 GMHGKFLDGRVIFVEEAKTRSDM 159
>ZFIN|ZDB-GENE-050306-51 [details] [associations]
symbol:rbm8a "RNA binding motif protein 8A"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0051028
"mRNA transport" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050306-51 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0051028
eggNOG:COG0724 GeneTree:ENSGT00550000074641 CTD:9939
HOGENOM:HOG000183826 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
EMBL:BC090261 IPI:IPI00505312 RefSeq:NP_001013363.1
UniGene:Dr.76821 HSSP:Q9Y5S9 ProteinModelPortal:Q5D018 SMR:Q5D018
STRING:Q5D018 PRIDE:Q5D018 Ensembl:ENSDART00000018253 GeneID:503767
KEGG:dre:503767 InParanoid:Q5D018 NextBio:20866311 Bgee:Q5D018
Uniprot:Q5D018
Length = 174
Score = 108 (43.1 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAAL 156
G L+V+ +H T +D+ + F+E GE+K ++ D+ G G A V Y +A AA+
Sbjct: 72 GWILFVTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAM 131
Query: 157 KRYNNVLLDGKPMKIE 172
+ N L G+P+ ++
Sbjct: 132 EGLNGQELMGQPISVD 147
>UNIPROTKB|E2R4B2 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
Length = 278
Score = 112 (44.5 bits), Expect = 0.00011, P = 0.00011
Identities = 36/116 (31%), Positives = 57/116 (49%)
Query: 59 ARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGI-SGIEVGTKLYVSNLHPGVTNDDIRE 117
+R SYT RR+R+ H + R G + + T L V L T D+RE
Sbjct: 82 SRSRSYTPEYRRRRSRS----HSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLRE 137
Query: 118 LFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172
+FS G L + +D + GR G A V + R D+ A++R N + LDG+ ++++
Sbjct: 138 VFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193
>UNIPROTKB|Q06AA6 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
Uniprot:Q06AA6
Length = 279
Score = 112 (44.5 bits), Expect = 0.00011, P = 0.00011
Identities = 36/116 (31%), Positives = 57/116 (49%)
Query: 59 ARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGI-SGIEVGTKLYVSNLHPGVTNDDIRE 117
+R SYT RR+R+ H + R G + + T L V L T D+RE
Sbjct: 82 SRSRSYTPEYRRRRSRS----HSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLRE 137
Query: 118 LFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172
+FS G L + +D + GR G A V + R D+ A++R N + LDG+ ++++
Sbjct: 138 VFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193
>UNIPROTKB|Q2KJ71 [details] [associations]
symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
Length = 281
Score = 112 (44.5 bits), Expect = 0.00011, P = 0.00011
Identities = 36/116 (31%), Positives = 57/116 (49%)
Query: 59 ARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGI-SGIEVGTKLYVSNLHPGVTNDDIRE 117
+R SYT RR+R+ H + R G + + T L V L T D+RE
Sbjct: 82 SRSRSYTPEYRRRRSRS----HSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLRE 137
Query: 118 LFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172
+FS G L + +D + GR G A V + R D+ A++R N + LDG+ ++++
Sbjct: 138 VFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193
>MGI|MGI:1933972 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
CleanEx:MM_TRA2A Genevestigator:Q6PFR5
GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
Length = 281
Score = 112 (44.5 bits), Expect = 0.00011, P = 0.00011
Identities = 36/116 (31%), Positives = 57/116 (49%)
Query: 59 ARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGI-SGIEVGTKLYVSNLHPGVTNDDIRE 117
+R SYT RR+R+ H + R G + + T L V L T D+RE
Sbjct: 80 SRSRSYTPEYRRRRSRS----HSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLRE 135
Query: 118 LFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172
+FS G L + +D + GR G A V + R D+ A++R N + LDG+ ++++
Sbjct: 136 VFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 191
>UNIPROTKB|Q13595 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
GermOnline:ENSG00000164548 Uniprot:Q13595
Length = 282
Score = 112 (44.5 bits), Expect = 0.00011, P = 0.00011
Identities = 36/116 (31%), Positives = 57/116 (49%)
Query: 59 ARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGI-SGIEVGTKLYVSNLHPGVTNDDIRE 117
+R SYT RR+R+ H + R G + + T L V L T D+RE
Sbjct: 82 SRSRSYTPEYRRRRSRS----HSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLRE 137
Query: 118 LFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172
+FS G L + +D + GR G A V + R D+ A++R N + LDG+ ++++
Sbjct: 138 VFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193
>RGD|1562563 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
Uniprot:B1WC25
Length = 282
Score = 112 (44.5 bits), Expect = 0.00011, P = 0.00011
Identities = 36/116 (31%), Positives = 57/116 (49%)
Query: 59 ARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGI-SGIEVGTKLYVSNLHPGVTNDDIRE 117
+R SYT RR+R+ H + R G + + T L V L T D+RE
Sbjct: 80 SRSRSYTPEYRRRRSRS----HSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLRE 135
Query: 118 LFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172
+FS G L + +D + GR G A V + R D+ A++R N + LDG+ ++++
Sbjct: 136 VFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 191
>UNIPROTKB|I3L521 [details] [associations]
symbol:I3L521 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP002373
Ensembl:ENST00000544347 Uniprot:I3L521
Length = 148
Score = 102 (41.0 bits), Expect = 0.00013, P = 0.00013
Identities = 26/86 (30%), Positives = 42/86 (48%)
Query: 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAA 155
E L+V NL VT + + ELF + G + + I DK+G+P A V + A
Sbjct: 4 EADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYA 63
Query: 156 LKRYNNVLLDGKPMKIEVVGTNAEIP 181
+ N + L G+P+KI+ ++ P
Sbjct: 64 MNLLNGIKLYGRPIKIQFRSGSSHAP 89
>DICTYBASE|DDB_G0292698 [details] [associations]
symbol:DDB_G0292698 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292698 GO:GO:0000166
EMBL:AAFI02000194 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG297815
RefSeq:XP_629578.1 ProteinModelPortal:Q54CU2 STRING:Q54CU2
PRIDE:Q54CU2 EnsemblProtists:DDB0233351 GeneID:8628839
KEGG:ddi:DDB_G0292698 InParanoid:Q54CU2 OMA:DPNTKES Uniprot:Q54CU2
Length = 306
Score = 112 (44.5 bits), Expect = 0.00013, P = 0.00013
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPS-GSAEVVYARRSDAFAAL 156
G L+VSNL+P D+R+ F+ IG++ I D N + S G V Y+ +A A+
Sbjct: 70 GNTLHVSNLNPRTRESDLRDTFASIGKVIDCTILLDPNTKESRGFGFVTYSSGDEAQDAI 129
Query: 157 KRYNNVLLDGKPMKIE 172
+R ++ +DG +++E
Sbjct: 130 QRLDSTKIDGNTIRVE 145
>UNIPROTKB|G4N872 [details] [associations]
symbol:MGG_06296 "Nuclear cap-binding protein subunit 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398 EMBL:CM001234
GO:GO:0000243 GO:GO:0000339 PANTHER:PTHR18847 GO:GO:0005846
KO:K12883 RefSeq:XP_003717292.1 ProteinModelPortal:G4N872
SMR:G4N872 EnsemblFungi:MGG_06296T0 GeneID:2684451
KEGG:mgr:MGG_06296 Uniprot:G4N872
Length = 185
Score = 107 (42.7 bits), Expect = 0.00013, P = 0.00013
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALK 157
T LYV NL T + + ELFS+ GE+KR + D+ N P G V Y DA +K
Sbjct: 48 TTLYVGNLSFYTTEEQVYELFSKCGEIKRLVMGLDRFNKTPCGFCFVEYYTHQDAIDCMK 107
Query: 158 RYNNVLLDGKPMKIEV 173
LD + ++ ++
Sbjct: 108 YIGGTKLDERVIRTDL 123
>FB|FBgn0033378 [details] [associations]
symbol:tsu "tsunagi" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0007310 "oocyte
dorsal/ventral axis specification" evidence=IMP] [GO:0007314
"oocyte anterior/posterior axis specification" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=IMP] [GO:0007312 "oocyte
nucleus migration involved in oocyte dorsal/ventral axis
specification" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0007317 "regulation of pole plasm oskar mRNA localization"
evidence=IMP;IPI] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0045451 "pole plasm oskar mRNA localization" evidence=TAS]
[GO:0046595 "establishment of pole plasm mRNA localization"
evidence=TAS] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007294
"germarium-derived oocyte fate determination" evidence=IMP]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IPI] [GO:0007173
"epidermal growth factor receptor signaling pathway" evidence=IMP]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
EMBL:AE013599 GO:GO:0005737 GO:GO:0007173 GO:GO:0000226
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006406
GO:GO:0000398 GO:GO:0071013 GO:GO:0007312 eggNOG:COG0724
GO:GO:0045451 GO:GO:0035145 GO:GO:0007317
GeneTree:ENSGT00550000074641 PDB:1HL6 PDB:1OO0 PDB:1RK8 PDB:2X1G
PDBsum:1HL6 PDBsum:1OO0 PDBsum:1RK8 PDBsum:2X1G KO:K12876
OMA:WILFVTS EMBL:AF173550 EMBL:AY071005 RefSeq:NP_610454.2
UniGene:Dm.19884 ProteinModelPortal:Q9V535 SMR:Q9V535
DIP:DIP-24075N IntAct:Q9V535 MINT:MINT-816263 STRING:Q9V535
PaxDb:Q9V535 PRIDE:Q9V535 EnsemblMetazoa:FBtr0088567 GeneID:35924
KEGG:dme:Dmel_CG8781 UCSC:CG8781-RA CTD:110124 FlyBase:FBgn0033378
InParanoid:Q9V535 OrthoDB:EOG4N02X6 PhylomeDB:Q9V535
EvolutionaryTrace:Q9V535 GenomeRNAi:35924 NextBio:795852
Bgee:Q9V535 GermOnline:CG8781 GO:GO:0046595 Uniprot:Q9V535
Length = 165
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 34/120 (28%), Positives = 57/120 (47%)
Query: 54 GPLSNARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTND 113
G SN R + + S+ R RN D +D L +E G L+V+++H D
Sbjct: 39 GSDSNTREAIH----SYERVRN----ED--DDELEPGPQRSVE-GWILFVTSIHEEAQED 87
Query: 114 DIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172
+I+E F + GE+K ++ D+ G G A V Y A AA + N + G+ ++++
Sbjct: 88 EIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 112 (44.5 bits), Expect = 0.00015, P = 0.00015
Identities = 29/98 (29%), Positives = 50/98 (51%)
Query: 96 EVG-TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAF 153
++G T L V+ L +T +++R LFS IGE++ + DK G G V Y DA
Sbjct: 16 DIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75
Query: 154 AALKRYNNVLLDGKPMKIEVVGTNAEIPLQARVNVTGV 191
A+ N + L K +K+ ++E+ A + ++G+
Sbjct: 76 RAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGL 113
>FB|FBgn0022943 [details] [associations]
symbol:Cbp20 "cap binding protein 20" species:7227
"Drosophila melanogaster" [GO:0000339 "RNA cap binding"
evidence=ISS] [GO:0005846 "nuclear cap binding complex"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0045071 "negative
regulation of viral genome replication" evidence=IMP] [GO:0035195
"gene silencing by miRNA" evidence=IMP] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005875 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045071 GO:GO:0030422 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0006370 GO:GO:0031053
GO:GO:0000339 PANTHER:PTHR18847 HSSP:P52298 KO:K12883
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AJ238969
EMBL:AY070578 RefSeq:NP_524396.1 UniGene:Dm.2405
ProteinModelPortal:Q9V3L6 SMR:Q9V3L6 IntAct:Q9V3L6 MINT:MINT-987792
STRING:Q9V3L6 PaxDb:Q9V3L6 PRIDE:Q9V3L6 EnsemblMetazoa:FBtr0083551
GeneID:42166 KEGG:dme:Dmel_CG12357 UCSC:CG12357-RA CTD:42166
FlyBase:FBgn0022943 InParanoid:Q9V3L6 OrthoDB:EOG4K0P4N
PhylomeDB:Q9V3L6 GenomeRNAi:42166 NextBio:827474 Bgee:Q9V3L6
Uniprot:Q9V3L6
Length = 154
Score = 103 (41.3 bits), Expect = 0.00015, P = 0.00015
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR-PSGSAEVVYARRSDAFAALKRY 159
LYV NL T + I ELFS G+++ + DK + P G V Y RS+A AA++
Sbjct: 32 LYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFCFVEYYVRSEAEAAMRFV 91
Query: 160 NNVLLDGKPMKIE 172
N LD + ++++
Sbjct: 92 NGTRLDDRLIRVD 104
>SGD|S000004949 [details] [associations]
symbol:HRB1 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0016021 "integral to membrane"
evidence=ISM] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004949 GO:GO:0016021 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723
eggNOG:COG0724 EMBL:X77114 GO:GO:0016973
GeneTree:ENSGT00410000025635 HOGENOM:HOG000111155 OrthoDB:EOG4F21C2
EMBL:U02536 EMBL:Z71280 EMBL:DQ881449 EMBL:EF123128 PIR:S45459
RefSeq:NP_014394.2 ProteinModelPortal:P38922 SMR:P38922
DIP:DIP-4959N IntAct:P38922 MINT:MINT-475842 STRING:P38922
PaxDb:P38922 PeptideAtlas:P38922 EnsemblFungi:YNL004W GeneID:855728
KEGG:sce:YNL004W CYGD:YNL004w OMA:KTHEVIV NextBio:980105
Genevestigator:P38922 GermOnline:YNL004W Uniprot:P38922
Length = 454
Score = 107 (42.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 25/80 (31%), Positives = 37/80 (46%)
Query: 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSD 151
+ G E +Y SNL D+ +LF IG++ + +D G P+G A V Y D
Sbjct: 369 VGGGERNRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDD 428
Query: 152 AFAALKRYNNVLLDGKPMKI 171
A ++R NN G + I
Sbjct: 429 ADVCIERLNNYNYGGCDLDI 448
Score = 42 (19.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 49 GAARRGPLSNARP-SSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISG 94
G+ RG R S Y + F N P D ++D R ++G
Sbjct: 57 GSRDRGEYRGGRERSDYRERERFNNRDN-PRSRDRYDDRRRGRDVTG 102
>UNIPROTKB|E5RH24 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00979703
ProteinModelPortal:E5RH24 SMR:E5RH24 Ensembl:ENST00000520142
ArrayExpress:E5RH24 Bgee:E5RH24 Uniprot:E5RH24
Length = 118
Score = 93 (37.8 bits), Expect = 0.00016, P = 0.00016
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPS-GSAEVVYARRSDAFAALKRY 159
LYV +LHP VT + E FS G + + D R S G A V + + +DA AL
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 160 NNVLLDGKPMKI 171
N ++ GKP++I
Sbjct: 73 NFDVIKGKPVRI 84
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 111 (44.1 bits), Expect = 0.00019, P = 0.00019
Identities = 30/98 (30%), Positives = 49/98 (50%)
Query: 96 EVG-TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAF 153
++G T L V+ L +T D++R LFS IGE++ + DK G G V Y DA
Sbjct: 16 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAE 75
Query: 154 AALKRYNNVLLDGKPMKIEVVGTNAEIPLQARVNVTGV 191
A+ N + L K +K+ ++E A + ++G+
Sbjct: 76 RAINTLNGLRLQSKTIKVSFARPSSETIKDANLYISGL 113
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 111 (44.1 bits), Expect = 0.00019, P = 0.00019
Identities = 29/98 (29%), Positives = 50/98 (51%)
Query: 96 EVG-TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAF 153
++G T L V+ L +T +++R LFS IGE++ + DK G G V Y DA
Sbjct: 16 DIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75
Query: 154 AALKRYNNVLLDGKPMKIEVVGTNAEIPLQARVNVTGV 191
A+ N + L K +K+ ++E+ A + ++G+
Sbjct: 76 RAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGL 113
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 111 (44.1 bits), Expect = 0.00019, P = 0.00019
Identities = 29/98 (29%), Positives = 50/98 (51%)
Query: 96 EVG-TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAF 153
++G T L V+ L +T +++R LFS IGE++ + DK G G V Y DA
Sbjct: 16 DIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75
Query: 154 AALKRYNNVLLDGKPMKIEVVGTNAEIPLQARVNVTGV 191
A+ N + L K +K+ ++E+ A + ++G+
Sbjct: 76 RAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGL 113
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 110 (43.8 bits), Expect = 0.00020, P = 0.00020
Identities = 31/112 (27%), Positives = 53/112 (47%)
Query: 61 PSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFS 120
P+S A++ T F + D F D + KL+V NL V + + +LF
Sbjct: 55 PAS-RFARNVAITSEFEVEEDGFAD-VAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFE 112
Query: 121 EIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171
G ++ + +DK GR G V + S+ AA +++N LDG+P+++
Sbjct: 113 SAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV 164
Score = 105 (42.0 bits), Expect = 0.00089, P = 0.00089
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 91 GISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARR 149
G SG G ++YV NL GV + + LFSE G++ + +D++ GR G V Y
Sbjct: 196 GGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSS 255
Query: 150 SDAFAALKRYNNVLLDGKPMKI 171
+ A+K + LDG+ +++
Sbjct: 256 QEVQNAIKSLDGADLDGRQIRV 277
>POMBASE|SPAC23A1.09 [details] [associations]
symbol:SPAC23A1.09 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=NAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC23A1.09
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045292 HOGENOM:HOG000183826
KO:K12876 HSSP:Q9Y5S9 PIR:T38229 RefSeq:NP_594439.1
ProteinModelPortal:O42847 SMR:O42847 STRING:O42847
EnsemblFungi:SPAC23A1.09.1 GeneID:2541998 KEGG:spo:SPAC23A1.09
eggNOG:NOG246776 OMA:ITETTEG OrthoDB:EOG4M9523 NextBio:20803079
Uniprot:O42847
Length = 121
Score = 92 (37.4 bits), Expect = 0.00022, P = 0.00022
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAAL 156
G + V+ +HP T + + +LF++ G +K ++ D+ G G A + YA A A+
Sbjct: 9 GYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAV 68
Query: 157 KRYNNVLLDGK 167
N LLD K
Sbjct: 69 DEKNLSLLDEK 79
>UNIPROTKB|F5GY08 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01012450 ProteinModelPortal:F5GY08 SMR:F5GY08
Ensembl:ENST00000544582 ArrayExpress:F5GY08 Bgee:F5GY08
Uniprot:F5GY08
Length = 220
Score = 107 (42.7 bits), Expect = 0.00026, P = 0.00026
Identities = 27/91 (29%), Positives = 44/91 (48%)
Query: 91 GISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRS 150
G + E L+V NL VT + + ELF + G + + I DK+G+P A V +
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 151 DAFAALKRYNNVLLDGKPMKIEVVGTNAEIP 181
A+ N + L G+P+KI+ ++ P
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKIQFRSGSSHAP 92
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 91 (37.1 bits), Expect = 0.00028, P = 0.00028
Identities = 30/100 (30%), Positives = 47/100 (47%)
Query: 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAA 155
+G+KLYV NL+ V + D+ F+ G +K + D+ GR G V +A AA
Sbjct: 1 MGSKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAA 60
Query: 156 LKRYNNVLLDGKPMKIEVVGTNAEIPLQARVNVTGVNGRR 195
+ N +DG+ + + N P + R +G GRR
Sbjct: 61 IAGLNGKEMDGRNLMV-----NEARPPERRGG-SGGGGRR 94
>UNIPROTKB|P52299 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8355 "Xenopus laevis" [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISS]
[GO:0000340 "RNA 7-methylguanosine cap binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005845
"mRNA cap binding complex" evidence=ISS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=IDA] [GO:0006446 "regulation of
translational initiation" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=IDA] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
GO:GO:0051028 GO:GO:0006370 GO:GO:0045292 HOVERGEN:HBG052581
PANTHER:PTHR18847 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
EMBL:BC072902 EMBL:X84788 PIR:I51602 RefSeq:NP_001167476.1
UniGene:Xl.43439 UniGene:Xl.81730 ProteinModelPortal:P52299
SMR:P52299 GeneID:100380998 KEGG:xla:100380998
Xenbase:XB-GENE-1005792 Uniprot:P52299
Length = 153
Score = 101 (40.6 bits), Expect = 0.00030, P = 0.00030
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPS-GSAEVVYARRSDAFAALKRY 159
LYV NL T + I ELFS+ G++KR + DK + + G V Y R+DA A++
Sbjct: 39 LYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRADAEQAMRFI 98
Query: 160 NNVLLDGKPMKIE 172
N LD + ++ +
Sbjct: 99 NGTRLDDRIVRTD 111
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 115 (45.5 bits), Expect = 0.00030, P = 0.00030
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158
+++YV +LH +T D IR FS G +K A+ D +G+ G A + Y + A AL+
Sbjct: 588 SRIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDASGKSKGYAFIEYDNQESAAKALQS 647
Query: 159 YNNVLLDGKPMKI 171
N ++ G+ +K+
Sbjct: 648 MTNYVMCGRAIKV 660
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 93 (37.8 bits), Expect = 0.00033, P = 0.00033
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPS-GSAEVVYARRSDAFAALKRY 159
LYV +LHP VT + E FS G + + D R S G A V + + +DA AL
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 160 NNVLLDGKPMKI 171
N ++ GKP++I
Sbjct: 73 NFDVIKGKPVRI 84
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 113 (44.8 bits), Expect = 0.00033, P = 0.00033
Identities = 22/74 (29%), Positives = 39/74 (52%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALK 157
G LYV N+ + +D +R+ FS G + + D+NGR G V + + +A AA+
Sbjct: 342 GVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVT 401
Query: 158 RYNNVLLDGKPMKI 171
N+ ++ KP+ +
Sbjct: 402 DMNSKMIGAKPLYV 415
>UNIPROTKB|Q3ZCE8 [details] [associations]
symbol:RBM8A "RNA-binding protein 8A" species:9913 "Bos
taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724
GO:GO:0035145 GeneTree:ENSGT00550000074641 HSSP:P52298
EMBL:BT025376 EMBL:BC102484 IPI:IPI00705285 IPI:IPI00939094
RefSeq:NP_001030401.1 UniGene:Bt.49450 ProteinModelPortal:Q3ZCE8
SMR:Q3ZCE8 STRING:Q3ZCE8 PRIDE:Q3ZCE8 Ensembl:ENSBTAT00000011016
GeneID:518045 KEGG:bta:518045 CTD:9939 HOGENOM:HOG000183826
HOVERGEN:HBG055173 InParanoid:Q3ZCE8 KO:K12876 OMA:WILFVTS
OrthoDB:EOG42822W NextBio:20872569 Uniprot:Q3ZCE8
Length = 174
Score = 103 (41.3 bits), Expect = 0.00037, P = 0.00037
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAAL 156
G L+V+ +H T +DI + F+E GE+K ++ D+ G G V Y +A AA+
Sbjct: 72 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 131
Query: 157 KRYNNVLLDGKPMKIE 172
+ N L G+P+ ++
Sbjct: 132 EGLNGQDLMGQPISVD 147
>UNIPROTKB|F6XAE9 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GeneTree:ENSGT00550000074641 CTD:9939 KO:K12876 OMA:WILFVTS
Ensembl:ENSCAFT00000017835 EMBL:AAEX03011037 RefSeq:XP_533035.1
ProteinModelPortal:F6XAE9 GeneID:475827 KEGG:cfa:475827
Uniprot:F6XAE9
Length = 174
Score = 103 (41.3 bits), Expect = 0.00037, P = 0.00037
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAAL 156
G L+V+ +H T +DI + F+E GE+K ++ D+ G G V Y +A AA+
Sbjct: 72 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 131
Query: 157 KRYNNVLLDGKPMKIE 172
+ N L G+P+ ++
Sbjct: 132 EGLNGQDLMGQPISVD 147
>UNIPROTKB|Q9Y5S9 [details] [associations]
symbol:RBM8A "RNA-binding protein 8A" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005737 "cytoplasm" evidence=NAS] [GO:0003729 "mRNA binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0035145 "exon-exon junction
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005654 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 GO:GO:0003729
Gene3D:3.30.70.330 TCDB:3.A.18.1.1 GO:GO:0006406 EMBL:AL160282
GO:GO:0000398 GO:GO:0071013 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0035145 PDB:2HYI PDB:2J0Q PDB:2J0S PDB:2XB2 PDB:3EX7
PDBsum:2HYI PDBsum:2J0Q PDBsum:2J0S PDBsum:2XB2 PDBsum:3EX7
GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 EMBL:CH471244
PDB:1P27 PDBsum:1P27 CTD:9939 HOGENOM:HOG000183826
HOVERGEN:HBG055173 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
EMBL:AF127761 EMBL:AF198620 EMBL:AF231511 EMBL:AF231512
EMBL:AF299118 EMBL:AF403012 EMBL:AF182415 EMBL:AF161463
EMBL:CR541823 EMBL:CR541805 EMBL:AK075009 EMBL:BC017088
IPI:IPI00001757 IPI:IPI00216659 RefSeq:NP_005096.1
RefSeq:XP_003960226.1 UniGene:Hs.591455 ProteinModelPortal:Q9Y5S9
SMR:Q9Y5S9 DIP:DIP-33070N IntAct:Q9Y5S9 MINT:MINT-265248
STRING:Q9Y5S9 PhosphoSite:Q9Y5S9 DMDM:10720244 PaxDb:Q9Y5S9
PRIDE:Q9Y5S9 DNASU:9939 Ensembl:ENST00000330165
Ensembl:ENST00000369307 Ensembl:ENST00000578414
Ensembl:ENST00000583313 GeneID:101060541 GeneID:9939
KEGG:hsa:101060541 KEGG:hsa:9939 UCSC:uc001ent.2 UCSC:uc001enu.2
GeneCards:GC01P145507 HGNC:HGNC:9905 HPA:CAB012803 HPA:HPA018403
MIM:605313 neXtProt:NX_Q9Y5S9 Orphanet:3320 PharmGKB:PA34270
InParanoid:Q9Y5S9 PhylomeDB:Q9Y5S9 ChiTaRS:RBM8A
EvolutionaryTrace:Q9Y5S9 GenomeRNAi:9939 NextBio:37498
PMAP-CutDB:Q9Y5S9 Bgee:Q9Y5S9 CleanEx:HS_RBM8A
Genevestigator:Q9Y5S9 GermOnline:ENSG00000131795 Uniprot:Q9Y5S9
Length = 174
Score = 103 (41.3 bits), Expect = 0.00037, P = 0.00037
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAAL 156
G L+V+ +H T +DI + F+E GE+K ++ D+ G G V Y +A AA+
Sbjct: 72 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 131
Query: 157 KRYNNVLLDGKPMKIE 172
+ N L G+P+ ++
Sbjct: 132 EGLNGQDLMGQPISVD 147
>RGD|1310099 [details] [associations]
symbol:Rbm8a "RNA binding motif protein 8A" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA;ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
PROSITE:PS50102 SMART:SM00360 RGD:1310099 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724 GO:GO:0035145
GeneTree:ENSGT00550000074641 CTD:9939 HOGENOM:HOG000183826
KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W EMBL:DQ359102
IPI:IPI00210002 RefSeq:NP_001258067.1 RefSeq:XP_001059872.1
UniGene:Rn.37716 ProteinModelPortal:Q27W01 SMR:Q27W01 STRING:Q27W01
PhosphoSite:Q27W01 PRIDE:Q27W01 Ensembl:ENSRNOT00000028807
GeneID:295284 KEGG:rno:295284 UCSC:RGD:1310099 InParanoid:Q27W01
NextBio:639304 Genevestigator:Q27W01 Uniprot:Q27W01
Length = 174
Score = 103 (41.3 bits), Expect = 0.00037, P = 0.00037
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAAL 156
G L+V+ +H T +DI + F+E GE+K ++ D+ G G V Y +A AA+
Sbjct: 72 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 131
Query: 157 KRYNNVLLDGKPMKIE 172
+ N L G+P+ ++
Sbjct: 132 EGLNGQDLMGQPISVD 147
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 90 (36.7 bits), Expect = 0.00037, P = 0.00037
Identities = 23/91 (25%), Positives = 43/91 (47%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRY 159
L+V + T + + + FS+ G++ + + DK RP G A V ++ + +A AL
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 160 NNVLLDGKPMKIEVVGTNAEIPLQARVNVTG 190
N L+DG+ + ++ P + N G
Sbjct: 83 NAQLVDGRVVILDTTKAAKHNPPDTKPNHAG 113
>WB|WBGene00003904 [details] [associations]
symbol:pabp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040019
"positive regulation of embryonic development" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0000003 GO:GO:0003676 GO:GO:0040019 EMBL:Z81037
eggNOG:NOG238057 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OMA:FETEGQA PIR:T19356
RefSeq:NP_492504.1 ProteinModelPortal:Q93233 SMR:Q93233
DIP:DIP-26233N IntAct:Q93233 MINT:MINT-1047210 STRING:Q93233
PaxDb:Q93233 EnsemblMetazoa:C17E4.5.1 EnsemblMetazoa:C17E4.5.2
GeneID:172768 KEGG:cel:CELE_C17E4.5 UCSC:C17E4.5 CTD:172768
WormBase:C17E4.5 InParanoid:Q93233 NextBio:876929 Uniprot:Q93233
Length = 205
Score = 105 (42.0 bits), Expect = 0.00038, P = 0.00038
Identities = 31/106 (29%), Positives = 51/106 (48%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRY 159
+YV N+ G T ++I + F G + R I D+ +G P G A V + + AL
Sbjct: 80 VYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAMT 139
Query: 160 NNVLLDGKPMKIEVVGTNAE-IPLQARVNVTGVNGRRKRTVVMTYV 204
++ LL G+ +K++ TN + R G GR + V++ YV
Sbjct: 140 DS-LLRGRQIKVDPKRTNKPGMSTTNRPPFRGRGGRGRGNVIVKYV 184
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 112 (44.5 bits), Expect = 0.00038, P = 0.00038
Identities = 21/88 (23%), Positives = 47/88 (53%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158
+ +YV N++ VT +++R+ FS+ G + + D+ G+ G V ++ +A A+K
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363
Query: 159 YNNVLLDGKPMKIEVVGTNAEIPLQARV 186
++ + GKP+ + + + +Q +V
Sbjct: 364 FHGQMFHGKPLYVAIAQKKEDRKMQLQV 391
>DICTYBASE|DDB_G0285363 [details] [associations]
symbol:DDB_G0285363 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0285363 GO:GO:0000166 EMBL:AAFI02000079
Gene3D:3.30.70.330 GO:GO:0003676 RefSeq:XP_638267.1
EnsemblProtists:DDB0186472 GeneID:8625075 KEGG:ddi:DDB_G0285363
InParanoid:Q54NB3 OMA:KPTTASM Uniprot:Q54NB3
Length = 348
Score = 96 (38.9 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAF 153
G E+ + V NL + DI +F IG LK + + D N + +A V++ +++ A
Sbjct: 221 GNELSFSVKVVNLPKSIIPSDIAYMFGVIGSLKDFEL--DTN---NSTATVIFKKKTHAL 275
Query: 154 AALKRYNNVLLDG 166
A+++RY+ V LDG
Sbjct: 276 ASIERYSGVELDG 288
Score = 49 (22.3 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 5 VDMSLDDIIKSRKK 18
++ SLDDI+KS+KK
Sbjct: 56 LETSLDDIVKSQKK 69
>UNIPROTKB|E2QV85 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 GO:GO:0071013
GO:GO:0035145 ProteinModelPortal:E2QV85 Ensembl:ENSCAFT00000017835
Uniprot:E2QV85
Length = 177
Score = 103 (41.3 bits), Expect = 0.00040, P = 0.00040
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAAL 156
G L+V+ +H T +DI + F+E GE+K ++ D+ G G V Y +A AA+
Sbjct: 75 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 134
Query: 157 KRYNNVLLDGKPMKIE 172
+ N L G+P+ ++
Sbjct: 135 EGLNGQDLMGQPISVD 150
>UNIPROTKB|I3LI59 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 GO:GO:0071013 GO:GO:0035145
GeneTree:ENSGT00550000074641 OMA:WILFVTS EMBL:CU606940
Ensembl:ENSSSCT00000022923 Uniprot:I3LI59
Length = 177
Score = 103 (41.3 bits), Expect = 0.00040, P = 0.00040
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAAL 156
G L+V+ +H T +DI + F+E GE+K ++ D+ G G V Y +A AA+
Sbjct: 75 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 134
Query: 157 KRYNNVLLDGKPMKIE 172
+ N L G+P+ ++
Sbjct: 135 EGLNGQDLMGQPISVD 150
>UNIPROTKB|Q9Y580 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007126 EMBL:CH471065 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 CTD:10179 eggNOG:NOG273605
HOGENOM:HOG000059553 HOVERGEN:HBG009324 KO:K13188 OrthoDB:EOG4W0XDN
EMBL:AF156098 EMBL:AK002015 EMBL:AK312619 EMBL:BC034381
IPI:IPI00001134 RefSeq:NP_057174.1 UniGene:Hs.7527
ProteinModelPortal:Q9Y580 SMR:Q9Y580 DIP:DIP-48833N IntAct:Q9Y580
MINT:MINT-1453692 STRING:Q9Y580 PhosphoSite:Q9Y580 DMDM:9978697
PRIDE:Q9Y580 DNASU:10179 Ensembl:ENST00000540163 GeneID:10179
KEGG:hsa:10179 UCSC:uc001pov.3 GeneCards:GC11P114305 HGNC:HGNC:9904
HPA:HPA013993 MIM:612413 neXtProt:NX_Q9Y580 PharmGKB:PA34269
PhylomeDB:Q9Y580 GenomeRNAi:10179 NextBio:38534 ArrayExpress:Q9Y580
Bgee:Q9Y580 CleanEx:HS_RBM7 Genevestigator:Q9Y580
GermOnline:ENSG00000076053 Uniprot:Q9Y580
Length = 266
Score = 107 (42.7 bits), Expect = 0.00041, P = 0.00041
Identities = 27/91 (29%), Positives = 44/91 (48%)
Query: 91 GISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRS 150
G + E L+V NL VT + + ELF + G + + I DK+G+P A V +
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 151 DAFAALKRYNNVLLDGKPMKIEVVGTNAEIP 181
A+ N + L G+P+KI+ ++ P
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKIQFRSGSSHAP 92
>UNIPROTKB|J3KPD3 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471065 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:DRHYSRE UniGene:Hs.7527 HGNC:HGNC:9904 EMBL:AP002373
ProteinModelPortal:J3KPD3 Ensembl:ENST00000375490 Uniprot:J3KPD3
Length = 267
Score = 107 (42.7 bits), Expect = 0.00042, P = 0.00042
Identities = 27/91 (29%), Positives = 44/91 (48%)
Query: 91 GISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRS 150
G + E L+V NL VT + + ELF + G + + I DK+G+P A V +
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 151 DAFAALKRYNNVLLDGKPMKIEVVGTNAEIP 181
A+ N + L G+P+KI+ ++ P
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKIQFRSGSSHAP 92
>TAIR|locus:2144945 [details] [associations]
symbol:SCL28 "SC35-like splicing factor 28" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007129 "synapsis"
evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0042138 "meiotic DNA double-strand break
formation" evidence=RCA] [GO:0045132 "meiotic chromosome
segregation" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 KO:K12900 EMBL:DQ446966 IPI:IPI00533357
RefSeq:NP_197382.3 UniGene:At.10034 ProteinModelPortal:Q1PDV2
SMR:Q1PDV2 STRING:Q1PDV2 PRIDE:Q1PDV2 EnsemblPlants:AT5G18810.1
GeneID:831999 KEGG:ath:AT5G18810 TAIR:At5g18810 InParanoid:Q1PDV2
OMA:GFVKYRY PhylomeDB:Q1PDV2 Genevestigator:Q1PDV2 Uniprot:Q1PDV2
Length = 236
Score = 106 (42.4 bits), Expect = 0.00043, P = 0.00043
Identities = 33/104 (31%), Positives = 48/104 (46%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN---GRPSGSAEVVYARRSDAFAALK 157
L + NL +D+R+ F G LK I+ +N G P G V Y DA A+K
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKD--IYLPRNYYTGEPRGFGFVKYRYAEDAAEAMK 106
Query: 158 RYNNVLLDGKPMKIEVVGTNAEIPLQARVNVTGVNGRR---KRT 198
R N+ ++ G+ + I N + P + R G +GR KRT
Sbjct: 107 RMNHKVIGGREIAIVFAEENRKTPQEMRTT-NGTSGRHGDYKRT 149
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 112 (44.5 bits), Expect = 0.00044, P = 0.00044
Identities = 28/89 (31%), Positives = 44/89 (49%)
Query: 83 FEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSA 142
FE SL+ A G+ LYV NL VT+D +RE F+ G + + D +G GS
Sbjct: 313 FEQSLKEAADKS--QGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSG 370
Query: 143 EVVYARRSDAFAALKRYNNVLLDGKPMKI 171
V ++ +A A+ N ++ KP+ +
Sbjct: 371 FVAFSTPEEATRAITEMNGKMIVTKPLYV 399
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 109 (43.4 bits), Expect = 0.00044, P = 0.00044
Identities = 26/90 (28%), Positives = 44/90 (48%)
Query: 82 LFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGS 141
+FE L+ I G + G KLY+ NL + ++ +R FS G + R + + G+ G
Sbjct: 278 MFEQ-LKRERIRGCQ-GVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKV-MQEEGQSKGF 334
Query: 142 AEVVYARRSDAFAALKRYNNVLLDGKPMKI 171
+ ++ DA A+ N +L KP+ I
Sbjct: 335 GLICFSSPEDATKAMTEMNGRILGSKPLSI 364
>FB|FBgn0024987 [details] [associations]
symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
Length = 485
Score = 110 (43.8 bits), Expect = 0.00049, P = 0.00049
Identities = 32/99 (32%), Positives = 50/99 (50%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALK 157
T LYV NL + +D + +FS G + + I DK GRP G A V Y +R +A A+K
Sbjct: 179 TNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIK 238
Query: 158 RYNNVLLDG--KPMKIEVVGTNAEIPL-QARVNVTGVNG 193
NN + +G +P+ + + + + Q + G NG
Sbjct: 239 ALNNTVPEGGSQPIWVRLAEEHGKAKAAQFMAQIGGGNG 277
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 109 (43.4 bits), Expect = 0.00056, P = 0.00056
Identities = 26/90 (28%), Positives = 44/90 (48%)
Query: 82 LFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGS 141
+FE L+ I G + G KLY+ NL + ++ +R FS G + R + + G+ G
Sbjct: 336 MFEQ-LKRERIRGCQ-GVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKV-MQEEGQSKGF 392
Query: 142 AEVVYARRSDAFAALKRYNNVLLDGKPMKI 171
+ ++ DA A+ N +L KP+ I
Sbjct: 393 GLICFSSPEDATKAMTEMNGRILGSKPLSI 422
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 103 (41.3 bits), Expect = 0.00060, P = 0.00060
Identities = 35/113 (30%), Positives = 52/113 (46%)
Query: 85 DSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPS-GSAE 143
D A I+G+ T L + NL T +D+R F G++ I DK R S G
Sbjct: 8 DRRAAPDINGL---TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGF 64
Query: 144 VVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAEIPLQARVNVTGVNGRRK 196
V + R DA AL R + L+DG+ +++ + + P R G GRR+
Sbjct: 65 VRFYERRDAEHALDRTDGKLVDGRELRVTLA--KYDRPSDERGGRGGGGGRRR 115
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 103 (41.3 bits), Expect = 0.00060, P = 0.00060
Identities = 35/113 (30%), Positives = 52/113 (46%)
Query: 85 DSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPS-GSAE 143
D A I+G+ T L + NL T +D+R F G++ I DK R S G
Sbjct: 8 DRRAAPDINGL---TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGF 64
Query: 144 VVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAEIPLQARVNVTGVNGRRK 196
V + R DA AL R + L+DG+ +++ + + P R G GRR+
Sbjct: 65 VRFYERRDAEHALDRTDGKLVDGRELRVTLA--KYDRPSDERGGRGGGGGRRR 115
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 97 (39.2 bits), Expect = 0.00061, P = 0.00061
Identities = 24/80 (30%), Positives = 39/80 (48%)
Query: 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSD 151
S +KL++ L V +++ FS GE+ I +DK +GR G V +A D
Sbjct: 35 SSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGD 94
Query: 152 AFAALKRYNNVLLDGKPMKI 171
A +A + L G+P++I
Sbjct: 95 ALSAKDAMDGKGLLGRPLRI 114
>UNIPROTKB|F1NPM7 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
Length = 277
Score = 106 (42.4 bits), Expect = 0.00062, P = 0.00062
Identities = 35/116 (30%), Positives = 56/116 (48%)
Query: 59 ARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGI-SGIEVGTKLYVSNLHPGVTNDDIRE 117
+R SYT RR+R+ H + R G + + T L V L T D+RE
Sbjct: 84 SRSRSYTPEYRRRRSRS----HSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLRE 139
Query: 118 LFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172
+FS G L + +D + GR G A V + R D+ A++ N + LDG+ ++++
Sbjct: 140 VFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHANGMELDGRRIRVD 195
>UNIPROTKB|C0H859 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8030 "Salmo salar" [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340 GO:GO:0051028
GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847 GO:GO:0046833
GO:GO:0006408 EMBL:BT043732 EMBL:BT058515 EMBL:BT060223
UniGene:Ssa.8109 ProteinModelPortal:C0H859 Uniprot:C0H859
Length = 155
Score = 99 (39.9 bits), Expect = 0.00064, P = 0.00064
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPS-GSAEVVYARRSDAFAALKRY 159
LYV NL T + + ELFS+ G++KR I DK + + G V Y R+DA A++
Sbjct: 41 LYVGNLSFYTTEEQVYELFSKSGDVKRIIIGLDKVKKTACGFCFVEYYTRTDAENAMRFV 100
Query: 160 NNVLLDGKPMKIE 172
N LD + ++ +
Sbjct: 101 NGTRLDDRIIRTD 113
>UNIPROTKB|C1BY64 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8010 "Esox lucius" [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340 GO:GO:0051028
GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847 GO:GO:0046833
GO:GO:0006408 EMBL:BT079543 ProteinModelPortal:C1BY64
Uniprot:C1BY64
Length = 155
Score = 99 (39.9 bits), Expect = 0.00064, P = 0.00064
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPS-GSAEVVYARRSDAFAALKRY 159
LYV NL T + + ELFS+ G++KR I DK + + G V Y R+DA A++
Sbjct: 41 LYVGNLSFYTTEEQVYELFSKSGDVKRIIIGLDKVKKTACGFCFVEYYTRADAENAMRFV 100
Query: 160 NNVLLDGKPMKIE 172
N LD + ++ +
Sbjct: 101 NGTRLDDRIIRTD 113
>ZFIN|ZDB-GENE-020419-31 [details] [associations]
symbol:ncbp2 "nuclear cap binding protein subunit 2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA;ISS]
[GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0046833 "positive regulation of RNA export from nucleus"
evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap binding"
evidence=ISS] [GO:0006408 "snRNA export from nucleus" evidence=ISS]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA
capping" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-020419-31
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:RQDYDPA GO:GO:0046833 GO:GO:0006408 EMBL:AY099530 EMBL:AL953867
EMBL:BC083529 IPI:IPI00487113 RefSeq:NP_775356.1 UniGene:Dr.83993
ProteinModelPortal:Q8JGR6 SMR:Q8JGR6 STRING:Q8JGR6
Ensembl:ENSDART00000008365 GeneID:192325 KEGG:dre:192325
InParanoid:Q8JGR6 NextBio:20797161 Bgee:Q8JGR6 Uniprot:Q8JGR6
Length = 155
Score = 99 (39.9 bits), Expect = 0.00064, P = 0.00064
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPS-GSAEVVYARRSDAFAALKRY 159
LYV NL T + + ELF++ G++KR I DK + + G V Y R+DA A++
Sbjct: 41 LYVGNLSFYTTEEQVHELFAKCGDVKRIIIGLDKIKKTACGFCFVEYYTRADAENAMRFV 100
Query: 160 NNVLLDGKPMKIE 172
N LD + ++ +
Sbjct: 101 NGTRLDDRIIRTD 113
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 107 (42.7 bits), Expect = 0.00065, P = 0.00065
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 88 RAAGISGIE--VGTKLYVSNLHPGVTNDDIRELFSEIGEL-KRYAIHFDKNGRPSGSAEV 144
RA+ G+ +G L+V NL P V + + FS +G+L K + D+NGR G V
Sbjct: 86 RASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFV 145
Query: 145 VYARRSDAFAALKRYNNVLLDGKPMKI 171
Y A AA++ NN L KP+ +
Sbjct: 146 SYDSFETADAAIEAMNNQFLMNKPITV 172
>DICTYBASE|DDB_G0286007 [details] [associations]
symbol:rbm8A "RNA-binding motif protein 8A"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0286007
GenomeReviews:CM000153_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12876 EMBL:AAFI02000084 eggNOG:NOG246776
RefSeq:XP_637941.1 ProteinModelPortal:Q54ME8 SMR:Q54ME8
STRING:Q54ME8 EnsemblProtists:DDB0233616 GeneID:8625394
KEGG:ddi:DDB_G0286007 InParanoid:Q54ME8 OMA:SERYSGK Uniprot:Q54ME8
Length = 187
Score = 102 (41.0 bits), Expect = 0.00068, P = 0.00068
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 80 HDLFEDSLRAAG--ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-G 136
H L +D G + IE G ++V N+ V D+ ++F+E G++K ++ D+ G
Sbjct: 51 HSLNDDGGDKVGEPLKSIE-GWIIFVRNIQEEVQEPDLMDIFAEYGQIKNIHLNIDRRTG 109
Query: 137 RPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172
G A + Y +RS+A A+K + L G + ++
Sbjct: 110 FTKGYALIEYEKRSEAEDAIKNGSGYELAGLKLSVD 145
>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
symbol:tra2a "transformer-2 alpha" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
Length = 297
Score = 106 (42.4 bits), Expect = 0.00071, P = 0.00071
Identities = 37/123 (30%), Positives = 55/123 (44%)
Query: 55 PLSNARPSSYTIAKSFRRTR---NFPWQHDLFEDSLRAAGI-SGIEVGTKLYVSNLHPGV 110
P S R S S RR + HD +DS + + T L V L
Sbjct: 87 PESRRRRSRSASPNSNRRKHAGSRSSYSHDSKKDSHNQGDARANPDPNTCLGVFGLSLYT 146
Query: 111 TNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169
T D+RE+FS G L + +D + GR G A V + DA A++R N + LDG+ +
Sbjct: 147 TERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEHIDDAKEAMERANGMELDGRRI 206
Query: 170 KIE 172
+++
Sbjct: 207 RVD 209
>UNIPROTKB|Q3MHY8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9913 "Bos
taurus" [GO:0007126 "meiosis" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007126 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102191
EMBL:BC104518 IPI:IPI00690650 RefSeq:NP_001029659.1
UniGene:Bt.56272 ProteinModelPortal:Q3MHY8 SMR:Q3MHY8 PRIDE:Q3MHY8
Ensembl:ENSBTAT00000010804 GeneID:515307 KEGG:bta:515307 CTD:10179
eggNOG:NOG273605 HOGENOM:HOG000059553 HOVERGEN:HBG009324
InParanoid:Q3MHY8 KO:K13188 OMA:DRHYSRE OrthoDB:EOG4W0XDN
NextBio:20871760 Uniprot:Q3MHY8
Length = 262
Score = 105 (42.0 bits), Expect = 0.00073, P = 0.00073
Identities = 26/82 (31%), Positives = 41/82 (50%)
Query: 91 GISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRS 150
G + E L+V NL VT + + ELF + G + + I DK+G+P A V +
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 151 DAFAALKRYNNVLLDGKPMKIE 172
A+ N + L G+P+KI+
Sbjct: 62 SVPYAMNLLNGIKLFGRPIKIQ 83
>UNIPROTKB|F1SJV7 [details] [associations]
symbol:LOC100522453 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 KO:K13188 OMA:DRHYSRE EMBL:CU856090
RefSeq:XP_003129925.1 Ensembl:ENSSSCT00000032163 GeneID:100522453
KEGG:ssc:100522453 Uniprot:F1SJV7
Length = 265
Score = 105 (42.0 bits), Expect = 0.00075, P = 0.00075
Identities = 26/82 (31%), Positives = 41/82 (50%)
Query: 91 GISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRS 150
G + E L+V NL VT + + ELF + G + + I DK+G+P A V +
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 151 DAFAALKRYNNVLLDGKPMKIE 172
A+ N + L G+P+KI+
Sbjct: 62 SVPYAMNLLNGIKLFGRPIKIQ 83
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 107 (42.7 bits), Expect = 0.00078, P = 0.00078
Identities = 27/93 (29%), Positives = 48/93 (51%)
Query: 84 EDSLRAAGISGIEVGT----KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRP 138
E + AA + ++ G+ +LYV +LH +T D +R +F G ++ + D + GR
Sbjct: 74 EKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRS 133
Query: 139 SGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171
G + ++ A AL++ N L G+PMK+
Sbjct: 134 KGYGFITFSDSECAKKALEQLNGFELAGRPMKV 166
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 101 (40.6 bits), Expect = 0.00081, P = 0.00081
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAALK 157
T L V L T D+RE+FS G L + +D + GR G A V + R D+ A++
Sbjct: 18 TCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAME 77
Query: 158 RYNNVLLDGKPMKIE 172
R N + LDG+ ++++
Sbjct: 78 RANGMELDGRRIRVD 92
>FB|FBgn0037602 [details] [associations]
symbol:CG8021 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0046331 "lateral inhibition" evidence=IMP]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0046331 HSSP:Q14103
GeneTree:ENSGT00390000008624 EMBL:BT031072 EMBL:BT032713
RefSeq:NP_649808.1 UniGene:Dm.36782 SMR:Q9VHP3
EnsemblMetazoa:FBtr0081878 GeneID:41021 KEGG:dme:Dmel_CG8021
UCSC:CG8021-RA FlyBase:FBgn0037602 InParanoid:Q9VHP3 OMA:HVANAEV
OrthoDB:EOG4M0CJB GenomeRNAi:41021 NextBio:821758 Uniprot:Q9VHP3
Length = 91
Score = 87 (35.7 bits), Expect = 0.00083, P = 0.00083
Identities = 22/74 (29%), Positives = 39/74 (52%)
Query: 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAALKR 158
KL+V NL + + ++R FS+ G + + FD+ G VV+++R DAF +
Sbjct: 11 KLFVGNLPWTIGSKELRTYFSKYGHVANAEVVFDRQLGLSKHYGFVVFSQR-DAFNSASN 69
Query: 159 YNNVLLDGKPMKIE 172
N LDG+ + ++
Sbjct: 70 QNTHFLDGRVLTVQ 83
>UNIPROTKB|I3L8K8 [details] [associations]
symbol:I3L8K8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 EMBL:CT956011
Ensembl:ENSSSCT00000026978 OMA:HRISVAF Uniprot:I3L8K8
Length = 87
Score = 87 (35.7 bits), Expect = 0.00083, P = 0.00083
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAA 155
E ++V NL V + + ELF + G L + I D++G P V + A
Sbjct: 7 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRDGNPKSFGFVCFKHPESVSYA 66
Query: 156 LKRYNNVLLDGKPMKIE 172
+ N + L G+P+ ++
Sbjct: 67 IALLNGIRLYGRPINVQ 83
>UNIPROTKB|I3LLT9 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00600000084414 EMBL:CU915556
Ensembl:ENSSSCT00000027399 OMA:SINGKEM Uniprot:I3LLT9
Length = 94
Score = 87 (35.7 bits), Expect = 0.00083, P = 0.00083
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPS-GSAEVVYARRSDAFAALKRY 159
+YVSNL +TN+D+ +FS+ G++ + I DK+ R S G A +++ + A +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
Query: 160 NN 161
NN
Sbjct: 72 NN 73
>POMBASE|SPBC8D2.09c [details] [associations]
symbol:msl1 "U2 snRNP-associated protein Msl1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0030620 "U2 snRNA binding"
evidence=ISO] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC8D2.09c GO:GO:0005829 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0005681 EMBL:AB004538 GO:GO:0005686
GO:GO:0045292 eggNOG:NOG317159 OrthoDB:EOG4TB7MM GO:GO:0030620
PANTHER:PTHR10501 PIR:T40754 RefSeq:NP_595571.1
ProteinModelPortal:Q7LL14 IntAct:Q7LL14 STRING:Q7LL14
EnsemblFungi:SPBC8D2.09c.1 GeneID:2541219 KEGG:spo:SPBC8D2.09c
OMA:LYLYCTQ NextBio:20802331 Uniprot:Q7LL14
Length = 111
Score = 87 (35.7 bits), Expect = 0.00083, P = 0.00083
Identities = 28/84 (33%), Positives = 42/84 (50%)
Query: 101 LYVSNLHPGVTNDDIRE----LFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAAL 156
LYV+NL+ + +D+R LFS G + I K + G A VV+ S A A+
Sbjct: 6 LYVNNLNDKINKNDLRTALYMLFSTYGTV--VDIVALKTPKMRGQAHVVFFDPSAAAIAM 63
Query: 157 KRYNNVLLDGKPMKIEVVGTNAEI 180
K N + GK MKI+ + ++I
Sbjct: 64 KALKNFIFFGKEMKIQYAHSKSKI 87
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 101 (40.6 bits), Expect = 0.00083, P = 0.00083
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAALK 157
T L V L T D+RE+FS G L + +D + GR G A V + R D+ A++
Sbjct: 18 TCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAME 77
Query: 158 RYNNVLLDGKPMKIE 172
R N + LDG+ ++++
Sbjct: 78 RANGMELDGRRIRVD 92
>UNIPROTKB|Q6DES0 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
EMBL:CR761328 EMBL:BC077024 RefSeq:NP_001006879.1 UniGene:Str.170
ProteinModelPortal:Q6DES0 SMR:Q6DES0 STRING:Q6DES0 PRIDE:Q6DES0
GeneID:448671 KEGG:xtr:448671 Xenbase:XB-GENE-1005786
InParanoid:Q6DES0 Bgee:Q6DES0 Uniprot:Q6DES0
Length = 153
Score = 98 (39.6 bits), Expect = 0.00086, P = 0.00086
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPS-GSAEVVYARRSDAFAALKRY 159
LYV NL T + I ELFS+ G++K+ + DK + + G V Y R+DA A++
Sbjct: 39 LYVGNLSFYTTEEQIHELFSKSGDVKKIVMGLDKIKKTACGFCFVEYYTRTDAEQAMRFI 98
Query: 160 NNVLLDGKPMKIE 172
N LD + ++ +
Sbjct: 99 NGTRLDDRIIRTD 111
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 105 (42.0 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALK 157
G LYV NL V +D +++ F G + + D+NGR G V + + +A +A+
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVT 375
Query: 158 RYNNVLLDGKPMKIEV 173
N+ ++ KP+ + +
Sbjct: 376 EMNSKMVCSKPLYVAI 391
Score = 41 (19.5 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 47 MTGAARRGPLSNARPSSYTIAKSF 70
+ GAA P N SSYT+A +
Sbjct: 12 VAGAAAPQPGQNQTGSSYTMASLY 35
>UNIPROTKB|F1PIK6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0014902 "myotube differentiation" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022267 Uniprot:F1PIK6
Length = 611
Score = 109 (43.4 bits), Expect = 0.00092, P = 0.00092
Identities = 26/90 (28%), Positives = 49/90 (54%)
Query: 84 EDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAE 143
E++ RA + +G+ ++V+NL V ++E+FS G +KR I DK+G+ G
Sbjct: 117 ENARRALQRTAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGT 176
Query: 144 VVYARRSDAFAALKRYNNVLLDGKPMKIEV 173
V + + +A A+ +N L +PM +++
Sbjct: 177 VTFEQAIEAVQAISMFNGQFLFDRPMHVKM 206
>WB|WBGene00001230 [details] [associations]
symbol:eif-3.G species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00343 SMART:SM00360 GO:GO:0009792 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0000003
GO:GO:0003743 EMBL:Z50044 eggNOG:COG0724
GeneTree:ENSGT00510000047802 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOGENOM:HOG000239560 PIR:T21238 RefSeq:NP_495778.1
ProteinModelPortal:Q19706 SMR:Q19706 STRING:Q19706 PaxDb:Q19706
EnsemblMetazoa:F22B5.2.1 EnsemblMetazoa:F22B5.2.2
EnsemblMetazoa:F22B5.2.3 GeneID:174346 KEGG:cel:CELE_F22B5.2
CTD:174346 WormBase:F22B5.2 InParanoid:Q19706 OMA:TRTETAF
NextBio:883648 Uniprot:Q19706
Length = 256
Score = 104 (41.7 bits), Expect = 0.00095, P = 0.00095
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 103 VSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNN 161
V+NL + D++R+LF +IG + R I DK G P G A V + R DA A+ N+
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239
Query: 162 VLLDGKPMKIE 172
+ + +K+E
Sbjct: 240 IRMYHMVLKVE 250
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 107 (42.7 bits), Expect = 0.00096, P = 0.00096
Identities = 27/93 (29%), Positives = 48/93 (51%)
Query: 84 EDSLRAAGISGIEVGT----KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRP 138
E + AA + ++ G+ +LYV +LH +T D +R +F G ++ + D + GR
Sbjct: 231 EKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRS 290
Query: 139 SGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171
G + ++ A AL++ N L G+PMK+
Sbjct: 291 KGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 101 (40.6 bits), Expect = 0.00098, P = 0.00098
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAALKR 158
+LYV +LH +T D +R +F G++ + D + GR G + ++ A AL++
Sbjct: 14 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 73
Query: 159 YNNVLLDGKPMKI 171
N L G+PM++
Sbjct: 74 LNGFELAGRPMRV 86
>UNIPROTKB|E2QWQ0 [details] [associations]
symbol:RBM7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 CTD:10179 KO:K13188 OMA:DRHYSRE
EMBL:AAEX03003476 EMBL:AAEX03003477 RefSeq:XP_853905.2
Ensembl:ENSCAFT00000021445 GeneID:611169 KEGG:cfa:611169
Uniprot:E2QWQ0
Length = 262
Score = 104 (41.7 bits), Expect = 0.0010, P = 0.0010
Identities = 26/82 (31%), Positives = 41/82 (50%)
Query: 91 GISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRS 150
G + E L+V NL VT + + ELF + G + + I DK+G+P A V +
Sbjct: 2 GAAAEEADRTLFVGNLETKVTEELLFELFHQAGPVVKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 151 DAFAALKRYNNVLLDGKPMKIE 172
A+ N + L G+P+KI+
Sbjct: 62 SVPYAMNLLNGIKLFGRPIKIQ 83
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 206 180 0.00092 109 3 11 22 0.43 32
31 0.39 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 130
No. of states in DFA: 548 (58 KB)
Total size of DFA: 131 KB (2084 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.53u 0.13s 15.66t Elapsed: 00:00:01
Total cpu time: 15.54u 0.13s 15.67t Elapsed: 00:00:01
Start: Sat May 11 05:44:03 2013 End: Sat May 11 05:44:04 2013
WARNINGS ISSUED: 1