BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028651
(206 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JJW6|REFP2_MOUSE RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2
PE=1 SV=1
Length = 218
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 107/195 (54%), Gaps = 30/195 (15%)
Query: 1 MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGGRMTGAARRGPLSNAR 60
MA +DMSLDDIIK R Q R RG G R GGR R
Sbjct: 1 MADKMDMSLDDIIKL------NRNQRRVNRGGGPRRNRPAIARGGR------------NR 42
Query: 61 PSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIREL 118
P+ Y+ R + P WQHDLF+ G G+E G KL VSNL GV++ DI+EL
Sbjct: 43 PAPYS------RPKPLPDKWQHDLFDSG--CGGGEGVETGAKLLVSNLDFGVSDADIQEL 94
Query: 119 FSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178
F+E G LK+ A+ +D++GR G+A+V + RR+DA A+K+Y V LDG+PM I++V +
Sbjct: 95 FAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS-- 152
Query: 179 EIPLQARVNVTGVNG 193
+I Q R +G G
Sbjct: 153 QIDPQRRPAQSGNRG 167
>sp|Q58EA2|THO4A_XENLA THO complex subunit 4-A OS=Xenopus laevis GN=alyref-a PE=2 SV=1
Length = 256
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 92/145 (63%), Gaps = 13/145 (8%)
Query: 60 RPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRE 117
RP+ Y+ R + P WQHDLF+ A +G+E G KL VSNL GV++ DI+E
Sbjct: 73 RPTPYS------RPKQLPDKWQHDLFDSGFGAG--AGMETGGKLLVSNLDFGVSDADIQE 124
Query: 118 LFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177
LF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN V LDG+PM I++V +
Sbjct: 125 LFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQ 184
Query: 178 AEI---PLQARVNVTGVNGRRKRTV 199
E P+Q++ GV R T+
Sbjct: 185 IEAQRRPIQSQSRGGGVTRPRGGTL 209
>sp|B5FXN8|THOC4_TAEGU THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1
Length = 254
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 108/185 (58%), Gaps = 8/185 (4%)
Query: 1 MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGGRMTGAARRGPLSN-- 58
MA +DMSLDDIIK + GR RGRG G GG G A GP+ N
Sbjct: 1 MADKMDMSLDDIIKLNRSQRGASRGGRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNRP 60
Query: 59 --ARPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDD 114
AR + R + P WQHDLF+ A +G+E G KL VSNL GV++ D
Sbjct: 61 VMARGGGRNRPAPYSRPKQLPEKWQHDLFDSGFGAG--AGVETGGKLLVSNLDFGVSDAD 118
Query: 115 IRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174
I+ELF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN V LDG+PM I++V
Sbjct: 119 IQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 178
Query: 175 GTNAE 179
+ +
Sbjct: 179 TSQID 183
>sp|Q28FB9|THOC4_XENTR THO complex subunit 4 OS=Xenopus tropicalis GN=alyref PE=2 SV=1
Length = 260
Score = 113 bits (282), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 88/137 (64%), Gaps = 13/137 (9%)
Query: 60 RPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRE 117
RP+ Y+ R + P WQHDLF+ +G+E G KL VSNL GV++ DI+E
Sbjct: 76 RPAPYS------RPKQLPDKWQHDLFDSGFGTG--AGMETGGKLLVSNLDFGVSDADIQE 127
Query: 118 LFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177
LF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN V LDG+PM I++V +
Sbjct: 128 LFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQ 187
Query: 178 AEI---PLQARVNVTGV 191
E P+Q++ G+
Sbjct: 188 IEAQRRPIQSQSRGGGI 204
>sp|Q6GLW1|THO4B_XENLA THO complex subunit 4-B OS=Xenopus laevis GN=alyref-b PE=2 SV=1
Length = 256
Score = 110 bits (275), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 87/137 (63%), Gaps = 13/137 (9%)
Query: 60 RPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRE 117
RP+ Y+ R + P WQHDLF+ +G+E G KL VSNL GV++ DI+E
Sbjct: 72 RPTPYS------RPKQLPDKWQHDLFDSGFGTG--AGMETGGKLLVSNLDFGVSDADIQE 123
Query: 118 LFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177
LF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN V LDG+ M I++V +
Sbjct: 124 LFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRSMNIQLVTSQ 183
Query: 178 AEI---PLQARVNVTGV 191
E P+Q++ GV
Sbjct: 184 IEAQRRPIQSQSRGGGV 200
>sp|O08583|THOC4_MOUSE THO complex subunit 4 OS=Mus musculus GN=Alyref PE=1 SV=3
Length = 255
Score = 104 bits (259), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 105/193 (54%), Gaps = 22/193 (11%)
Query: 1 MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGG----RMTGAARRGPL 56
MA +DMSLDDIIK + RG GR R G G G+V R G R P
Sbjct: 1 MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGAVQAAARVNRGGGPMRNRPA 60
Query: 57 SNA--------RPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNL 106
RP+ Y+ R + P WQHDLF+ E G KL VSNL
Sbjct: 61 IARGAAGGGRNRPAPYS------RPKQLPDKWQHDLFDSGFGGGAGV--ETGGKLLVSNL 112
Query: 107 HPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166
GV++ DI+ELF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN V LDG
Sbjct: 113 DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 172
Query: 167 KPMKIEVVGTNAE 179
+PM I++V + +
Sbjct: 173 RPMNIQLVTSQID 185
>sp|Q86V81|THOC4_HUMAN THO complex subunit 4 OS=Homo sapiens GN=ALYREF PE=1 SV=3
Length = 257
Score = 100 bits (249), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 74/112 (66%), Gaps = 4/112 (3%)
Query: 70 FRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR 127
+ R + P WQHDLF+ E G KL VSNL GV++ DI+ELF+E G LK+
Sbjct: 77 YSRPKQLPDKWQHDLFDSGFGGGAGV--ETGGKLLVSNLDFGVSDADIQELFAEFGTLKK 134
Query: 128 YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAE 179
A+H+D++GR G+A+V + R++DA A+K+YN V LDG+PM I++V + +
Sbjct: 135 AAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQID 186
>sp|Q3T0I4|THOC4_BOVIN THO complex subunit 4 OS=Bos taurus GN=ALYREF PE=2 SV=1
Length = 257
Score = 100 bits (249), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 74/112 (66%), Gaps = 4/112 (3%)
Query: 70 FRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR 127
+ R + P WQHDLF+ E G KL VSNL GV++ DI+ELF+E G LK+
Sbjct: 77 YSRPKQLPDKWQHDLFDSGFGGGAGV--ETGGKLLVSNLDFGVSDADIQELFAEFGTLKK 134
Query: 128 YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAE 179
A+H+D++GR G+A+V + R++DA A+K+YN V LDG+PM I++V + +
Sbjct: 135 AAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQID 186
>sp|Q9BY77|PDIP3_HUMAN Polymerase delta-interacting protein 3 OS=Homo sapiens GN=POLDIP3
PE=1 SV=2
Length = 421
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 9/83 (10%)
Query: 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY-AIHFDKNGRPSGSAEVVYARRS 150
+S +E GTK+ V+NLHP VT +DI ELF G LKR +H G AEVV+ ++
Sbjct: 274 LSPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH-------PGVAEVVFVKKD 325
Query: 151 DAFAALKRYNNVLLDGKPMKIEV 173
DA A K+YNN LDG+PMK +
Sbjct: 326 DAITAYKKYNNRCLDGQPMKCNL 348
>sp|Q8BG81|PDIP3_MOUSE Polymerase delta-interacting protein 3 OS=Mus musculus GN=Poldip3
PE=2 SV=1
Length = 420
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 9/83 (10%)
Query: 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY-AIHFDKNGRPSGSAEVVYARRS 150
+S +E GTK+ V+NLHP VT +DI ELF G LKR +H G AEVV+ ++
Sbjct: 274 LSPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH-------PGVAEVVFVKKD 325
Query: 151 DAFAALKRYNNVLLDGKPMKIEV 173
DA A K+YNN LDG+PMK +
Sbjct: 326 DAITAYKKYNNRCLDGQPMKCNL 348
>sp|Q09330|MLO3_SCHPO mRNA export protein mlo3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mlo3 PE=1 SV=1
Length = 199
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 46/176 (26%)
Query: 1 MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGGRMTGAARRGPLSNAR 60
M+ +D SLD II S+ K G R+ R R P P NA+
Sbjct: 1 MSMELDQSLDAIIASKPK-------GGIRKRRARSNKPK---------------PTKNAK 38
Query: 61 PSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELF- 119
P+ T + A S I +K+ VSNL VT ++ELF
Sbjct: 39 PAVNTAS----------------------ALKSVISEESKIIVSNLPTDVTEAQVKELFV 76
Query: 120 SEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG-KPMKIEVV 174
IG KR ++ + NGR G A ++++R DA A ++Y L+DG + MK+E++
Sbjct: 77 KSIGPCKRVSLAYGPNGRSKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEII 132
>sp|Q9XFD1|NCBP2_ARATH Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana
GN=CBP20 PE=1 SV=1
Length = 257
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 72 RTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIH 131
R R F + F+++LRA+ T +Y+ N+ T + + ELFS GE+K+ +
Sbjct: 15 RDRRFSGTQEEFDEALRAS--------TTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMG 66
Query: 132 FDKNGR-PSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173
DKN + P G V++ R D A+K + +LD +P++++
Sbjct: 67 LDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDF 109
>sp|Q84L14|NCBP2_ORYSJ Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp.
japonica GN=CBP20 PE=2 SV=1
Length = 243
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Query: 72 RTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIH 131
R R F + +E +L+A+ +YV N+ T + ELFS GE+++ +
Sbjct: 15 RDRRFTGTQEEYEAALQAS--------VTVYVGNMSFYTTEEQAYELFSRAGEIRKIIMG 66
Query: 132 FDKNGR-PSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173
DKN + P G ++Y R DA A+K + +LD +P++++
Sbjct: 67 LDKNSKTPCGFCFILYYSREDAEDAVKYISGTMLDDRPIRVDF 109
>sp|Q12159|YRA1_YEAST RNA annealing protein YRA1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YRA1 PE=1 SV=2
Length = 226
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 30/171 (17%)
Query: 1 MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGP---SGSVSGGRMTGAARRGPL- 56
M+ ++D SLD+II S K G RAR G RG GP V R + RRGP+
Sbjct: 1 MSANLDKSLDEIIGSNKA-----GSNRARVGGTRGNGPRRVGKQVGSQRRSLPNRRGPIR 55
Query: 57 SNARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIR 116
N R +A R A + K+ V L + D +R
Sbjct: 56 KNTRAPPNAVA--------------------RVAKLLDTTREVKVNVEGLPRDIKQDAVR 95
Query: 117 ELF-SEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166
E F S++G ++R + +++ G+ +G A + + A A++R+N +DG
Sbjct: 96 EFFASQVGGVQRVLLSYNERGQSTGMANITFKNGELARRAVERFNGSPIDG 146
>sp|B5G279|NCBP2_TAEGU Nuclear cap-binding protein subunit 2 OS=Taeniopygia guttata
GN=NCBP2 PE=2 SV=1
Length = 168
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 56 LSNARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDI 115
LS SY +R ++F L E SL+ + + LYV NL T + I
Sbjct: 9 LSGLNSDSYCEISQYR-DQHFRGSRQLQEKSLK--------ISSTLYVGNLSFYTTEEQI 59
Query: 116 RELFSEIGELKRYAIHFDKNGR-PSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172
+ELFS+ G++KR + DK + P G V Y R+DA A++ N LD + ++ +
Sbjct: 60 QELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAMRFINGTRLDDRIIRTD 117
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158
+ LYV NL P ++++ ++E+FS G + + D NG GS V +A +A A+ +
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQ 377
Query: 159 YNNVLLDGKPMKIEV 173
+ +++ KP+ + +
Sbjct: 378 LSGKMIESKPLYVAI 392
Score = 38.1 bits (87), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158
T +YV NL T+DD++ F E G++ + D G+ G V + DA A++
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 274
Query: 159 YNNVLLDGK 167
N D K
Sbjct: 275 LNGHKFDDK 283
>sp|Q5ZKR5|NCBP2_CHICK Nuclear cap-binding protein subunit 2 OS=Gallus gallus GN=NCBP2
PE=2 SV=1
Length = 168
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR-PSGSAEVVYARRSDAF 153
+++ + LYV NL T + I+ELFS+ G++KR + DK + P G V Y R+DA
Sbjct: 39 LKISSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAE 98
Query: 154 AALKRYNNVLLDGKPMKIE 172
A++ N LD + ++ +
Sbjct: 99 HAMRFINGTRLDDRIVRTD 117
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160
+++ NLHP + N + E FS GE+ + D+NG G V + SDA A++ N
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVN 199
Query: 161 NVLLDG 166
+L++G
Sbjct: 200 GMLMNG 205
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158
T +YV N+ T+++ +LFS+ GE+ A+ D G+P G V + + A A++
Sbjct: 231 TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEE 290
Query: 159 YN 160
N
Sbjct: 291 LN 292
Score = 30.4 bits (67), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPS-GSAEVVYARRSDAFAALKRY 159
LYV L P +T + ++FS +G + + D + S G A V Y A++
Sbjct: 52 LYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQEL 111
Query: 160 NNVLLDGKPMKI 171
N ++G+P +I
Sbjct: 112 NYAEINGRPCRI 123
>sp|Q7QCB6|NCBP2_ANOGA Nuclear cap-binding protein subunit 2 OS=Anopheles gambiae GN=Cbp20
PE=3 SV=3
Length = 163
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR-PSGSAEVVYARRSDAF 153
+ V + LYV NL T + I ELFS G+++R + DK + P G V Y R DA
Sbjct: 34 LRVSSTLYVGNLSFYTTEEQIHELFSRCGDVRRIIMGLDKFKKTPCGFCFVEYYSRLDAE 93
Query: 154 AALKRYNNVLLDGKPMKIE 172
+A++ N LD + ++++
Sbjct: 94 SAMRYINGTRLDDRIVRVD 112
>sp|O17310|SXL_MUSDO Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1
Length = 324
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALK 157
T LYV+NL +T+D++ ++F + G + + I DK GRP G A V + +R +A A+
Sbjct: 188 TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAIS 247
Query: 158 RYNNVLLDG--KPMKIEVVGTNAEIPLQARVNVTGV 191
NNV+ +G +P+ + + + ++ +N G+
Sbjct: 248 ALNNVIPEGASQPLTVRLAEEHGKMKAHHFMNQLGM 283
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAAL 156
GT L V+ L +T+ ++ LF G + I D K G G A V +A DA A+
Sbjct: 101 GTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAI 160
Query: 157 KRYNNVLLDGKPMKI 171
K N + + K +K+
Sbjct: 161 KTVNGITVRNKRLKV 175
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 47/88 (53%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158
+ +YV N++ VT +++R+ FS+ G + + D+ G+ G V ++ +A A+K
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363
Query: 159 YNNVLLDGKPMKIEVVGTNAEIPLQARV 186
++ + GKP+ + + + +Q +V
Sbjct: 364 FHGQMFHGKPLYVAIAQKKEDRKMQLQV 391
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAA 155
V LYV +LHP VT + + F+E L + D +GR + R DA A
Sbjct: 22 VTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLA 81
Query: 156 LKRYNNVLLDGKPMKI 171
+++ NN LL+GK +++
Sbjct: 82 IEKKNNSLLNGKMIRV 97
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDA 152
E T LY+ NL V+ D +RE F+E G++ AI D+N G A V + DA
Sbjct: 198 EKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDA 254
>sp|Q177H0|NCBP2_AEDAE Nuclear cap-binding protein subunit 2 OS=Aedes aegypti GN=Cbp20
PE=3 SV=1
Length = 159
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR-PSGSAEVVYARRSDAF 153
+ + + LY+ NL T + I ELFS G+++R + DK + P G V Y R DA
Sbjct: 30 LRLTSTLYIGNLSFYTTEEQIHELFSRCGDIRRIVMGLDKFKKTPCGFCFVEYYARDDAE 89
Query: 154 AALKRYNNVLLDGKPMKIE 172
+A++ N LD + ++++
Sbjct: 90 SAMRYINGTRLDDRIVRVD 108
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALK 157
T LYV+NL +T+D++ ++F + G + + I DK G+P G A V + +R +A A+
Sbjct: 171 TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAIS 230
Query: 158 RYNNVLLDG--KPMKIEVVGTNAEIPLQARVNVTGV 191
NNV+ +G +P+ + + + ++ +N G+
Sbjct: 231 ALNNVIPEGASQPLTVRLAEEHGKMKAHHFMNQLGM 266
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAAL 156
GT L V+ L +T+ ++ LF G + I D K G G A V +A DA A+
Sbjct: 84 GTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAI 143
Query: 157 KRYNNVLLDGKPMKI 171
K N V + K +K+
Sbjct: 144 KSLNGVTVRNKRLKV 158
>sp|Q8C854|MYEF2_MOUSE Myelin expression factor 2 OS=Mus musculus GN=Myef2 PE=1 SV=1
Length = 591
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAAL 156
+G+ ++V+NL V ++E+FS G +KR I DK+G+ G V + + +A A+
Sbjct: 222 LGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAI 281
Query: 157 KRYNNVLLDGKPMKIEV 173
+N L +PM +++
Sbjct: 282 SMFNGQFLFDRPMHVKM 298
>sp|Q9Y580|RBM7_HUMAN RNA-binding protein 7 OS=Homo sapiens GN=RBM7 PE=1 SV=1
Length = 266
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%)
Query: 91 GISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRS 150
G + E L+V NL VT + + ELF + G + + I DK+G+P A V +
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 151 DAFAALKRYNNVLLDGKPMKIEVVGTNAEIP 181
A+ N + L G+P+KI+ ++ P
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKIQFRSGSSHAP 92
>sp|B3LYP1|NCBP2_DROAN Nuclear cap-binding protein subunit 2 OS=Drosophila ananassae
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR-PSGSAEVVYARRSDAFAALK 157
T LYV NL T + I ELFS G+++ + DK + P G V Y R++A AA++
Sbjct: 30 TTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFCFVEYYTRAEAEAAMR 89
Query: 158 RYNNVLLDGKPMKIE 172
N LD + ++++
Sbjct: 90 FVNGTRLDDRLIRVD 104
>sp|Q7SG09|MRD1_NEUCR Multiple RNA-binding domain-containing protein 1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=mrd-1 PE=3 SV=1
Length = 827
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 90 AGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARR 149
+ IS IE ++L++ NL VT DD+RE F++ G L + D G G A + Y +
Sbjct: 299 SAISLIEKTSRLFLRNLSYTVTEDDVREHFAKFGILVEVHVPLDSKGHSKGFAMIRYEKP 358
Query: 150 SDAFAALKRYNNVL 163
+ A AA + V
Sbjct: 359 ASALAAFQTDGTVF 372
Score = 33.9 bits (76), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGEL--KRYAIHFDKNGRPSGSAEVVYARRS-DAFA 154
GTKL V NL VT ++R LFS G+L R F+++ R AE A+ + +AF
Sbjct: 703 GTKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALNAFN 762
Query: 155 ALK 157
+LK
Sbjct: 763 SLK 765
>sp|Q24668|SXL_DROSU Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2
Length = 354
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALK 157
T LYV+NL +T+D + +F + G + + I DK GRP G A V Y +R +A A+
Sbjct: 213 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 272
Query: 158 RYNNVLLDG--KPMKIEV 173
NNV+ +G +P+ + +
Sbjct: 273 ALNNVIPEGGSQPLSVRL 290
>sp|P19339|SXL_DROME Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1
Length = 354
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALK 157
T LYV+NL +T+D + +F + G + + I DK GRP G A V Y +R +A A+
Sbjct: 211 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 270
Query: 158 RYNNVLLDG--KPMKIEVV 174
NNV+ +G +P+ + +
Sbjct: 271 ALNNVIPEGGSQPLSVRLA 289
>sp|B4JUT1|NCBP2_DROGR Nuclear cap-binding protein subunit 2 OS=Drosophila grimshawi
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR-PSGSAEVVYARRSDAFAALK 157
T LYV NL T + I ELFS G+++ + DK + P G V Y R++A AA++
Sbjct: 30 TTLYVGNLSFYTTEEQIHELFSRCGDVRIIVMGLDKYKKTPCGFCFVEYYTRAEAEAAMR 89
Query: 158 RYNNVLLDGKPMKIE 172
N LD + ++++
Sbjct: 90 FVNGTRLDDRLIRVD 104
>sp|B4LZ88|NCB2B_DROVI Nuclear cap-binding protein subunit 2B OS=Drosophila virilis
GN=Cbp20-B PE=3 SV=1
Length = 154
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR-PSGSAEVVYARRSDAFAALK 157
T LYV NL T + I ELFS G+++ + DK + P G V Y R++A AA++
Sbjct: 30 TTLYVGNLSFYTTEEQIHELFSRCGDVRIIVMGLDKYKKTPCGFCFVEYYTRAEAEAAMR 89
Query: 158 RYNNVLLDGKPMKIE 172
N LD + ++++
Sbjct: 90 FVNGTRLDDRLIRVD 104
>sp|Q9P2K5|MYEF2_HUMAN Myelin expression factor 2 OS=Homo sapiens GN=MYEF2 PE=1 SV=3
Length = 600
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAAL 156
+G+ ++V+NL V ++E+FS G +KR I DK+G+ G V + + +A A+
Sbjct: 231 LGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAI 290
Query: 157 KRYNNVLLDGKPMKIEV 173
+N L +PM +++
Sbjct: 291 SMFNGQFLFDRPMHVKM 307
>sp|Q28BZ1|RBM8A_XENTR RNA-binding protein 8A OS=Xenopus tropicalis GN=rbm8a PE=2 SV=1
Length = 174
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAAL 156
G L+V+ +H T +DI + F E GE+K ++ D + G G A V Y +A AA+
Sbjct: 72 GWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAM 131
Query: 157 KRYNNVLLDGKPMKIE 172
+ N L G+P+ ++
Sbjct: 132 EGLNGQDLMGQPISVD 147
>sp|Q6C747|EIF3G_YARLI Eukaryotic translation initiation factor 3 subunit G OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TIF35 PE=3 SV=1
Length = 294
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAALKRY 159
L V+NL T+DD+R +F + G + R + D++ GRP G A V Y +S A AAL+
Sbjct: 216 LRVTNLSEEATDDDLRRMFGKYGMINRVYVAKDRDTGRPRGFAFVTYTLKSHAQAALEAM 275
Query: 160 NNVLLDGKPMKIE 172
+ D MK++
Sbjct: 276 DGHGFDNLIMKVD 288
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALK 157
G+ LY+ NL V ++ ++E+FSE G + + + G G V Y+ +A A+K
Sbjct: 341 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMK 400
Query: 158 RYNNVLLDGKPMKIEV 173
N ++ KP+ + +
Sbjct: 401 EMNGKMIGRKPLYVAL 416
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158
+ LYV +L P V + +LF+++ + + D R G A V +A DA A++
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMES 118
Query: 159 YNNVLLDGKPMKIEVVGTNAEIPLQARVNV 188
N + +P++I + + L + NV
Sbjct: 119 LNYAPIRDRPIRIMLSNRDPSTRLSGKGNV 148
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 34/66 (51%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158
T +YV NL +T+D++++ F + G++ + D++G V + A A+++
Sbjct: 239 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEK 298
Query: 159 YNNVLL 164
N + L
Sbjct: 299 MNGISL 304
>sp|Q6PH90|RB8AB_XENLA RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8a-b PE=2 SV=1
Length = 174
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAAL 156
G L+V+ +H T +DI + F E GE+K ++ D + G G A V Y +A AA+
Sbjct: 72 GWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAM 131
Query: 157 KRYNNVLLDGKPMKIE 172
+ N L G+P+ ++
Sbjct: 132 EGLNGQDLMGQPVSVD 147
>sp|Q9DF42|RB8AA_XENLA RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8a-a PE=2 SV=1
Length = 174
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAAL 156
G L+V+ +H T +DI + F E GE+K ++ D + G G A V Y +A AA+
Sbjct: 72 GWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAM 131
Query: 157 KRYNNVLLDGKPMKIE 172
+ N L G+P+ ++
Sbjct: 132 EGLNGQDLMGQPVSVD 147
>sp|B4M205|NCB2A_DROVI Nuclear cap-binding protein subunit 2-A OS=Drosophila virilis
GN=Cbp20-A PE=3 SV=1
Length = 154
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR-PSGSAEVVYARRSDAFAALK 157
+ LYV NL + I ELFS G+++ + DK + P G V Y +RS+A AA++
Sbjct: 30 STLYVGNLSFYTAEEQIHELFSRCGDVRMIVMGLDKYKKTPCGFCFVEYYKRSEAEAAMR 89
Query: 158 RYNNVLLDGKPMKIE 172
N LD + ++++
Sbjct: 90 FVNGTRLDDRLIRVD 104
>sp|B4QV17|NCBP2_DROSI Nuclear cap-binding protein subunit 2 OS=Drosophila simulans
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR-PSGSAEVVYARRSDAFAALK 157
LYV NL T + I ELFS G+++ + DK + P G V Y RS+A AA++
Sbjct: 30 CTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFCFVEYYVRSEAEAAMR 89
Query: 158 RYNNVLLDGKPMKIE 172
N LD + ++++
Sbjct: 90 FVNGTRLDDRLIRVD 104
>sp|B4IBA4|NCBP2_DROSE Nuclear cap-binding protein subunit 2 OS=Drosophila sechellia
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR-PSGSAEVVYARRSDAFAALK 157
LYV NL T + I ELFS G+++ + DK + P G V Y RS+A AA++
Sbjct: 30 CTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFCFVEYYVRSEAEAAMR 89
Query: 158 RYNNVLLDGKPMKIE 172
N LD + ++++
Sbjct: 90 FVNGTRLDDRLIRVD 104
>sp|Q9V3L6|NCBP2_DROME Nuclear cap-binding protein subunit 2 OS=Drosophila melanogaster
GN=Cbp20 PE=1 SV=1
Length = 154
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR-PSGSAEVVYARRSDAFAALK 157
LYV NL T + I ELFS G+++ + DK + P G V Y RS+A AA++
Sbjct: 30 CTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFCFVEYYVRSEAEAAMR 89
Query: 158 RYNNVLLDGKPMKIE 172
N LD + ++++
Sbjct: 90 FVNGTRLDDRLIRVD 104
>sp|B4PL68|NCBP2_DROYA Nuclear cap-binding protein subunit 2 OS=Drosophila yakuba GN=Cbp20
PE=3 SV=1
Length = 154
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR-PSGSAEVVYARRSDAFAALK 157
LYV NL T + I ELFS G+++ + DK + P G V Y RS+A AA++
Sbjct: 30 CTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFCFVEYYIRSEAEAAMR 89
Query: 158 RYNNVLLDGKPMKIE 172
N LD + ++++
Sbjct: 90 FVNGTRLDDRLIRVD 104
>sp|B7P877|NCBP2_IXOSC Nuclear cap-binding protein subunit 2 OS=Ixodes scapularis GN=Cbp20
PE=3 SV=1
Length = 152
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAF 153
+ + T LYV N+ T + I ELFS+ G++K+ + D+ + P G V Y R DA
Sbjct: 24 LRLSTTLYVGNMSFYTTEEQIYELFSKCGDVKKVIMGLDRFHKTPCGFCFVEYYTREDAE 83
Query: 154 AALKRYNNVLLDGKPMKIE 172
A++ N LD + ++ +
Sbjct: 84 NAIRYVNGTKLDDRIIRTD 102
>sp|Q3MHY8|RBM7_BOVIN RNA-binding protein 7 OS=Bos taurus GN=RBM7 PE=2 SV=1
Length = 262
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 91 GISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRS 150
G + E L+V NL VT + + ELF + G + + I DK+G+P A V +
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 151 DAFAALKRYNNVLLDGKPMKIEV 173
A+ N + L G+P+KI+
Sbjct: 62 SVPYAMNLLNGIKLFGRPIKIQF 84
>sp|Q5D018|RBM8A_DANRE RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=2 SV=1
Length = 174
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAAL 156
G L+V+ +H T +D+ + F+E GE+K ++ D + G G A V Y +A AA+
Sbjct: 72 GWILFVTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAM 131
Query: 157 KRYNNVLLDGKPMKIE 172
+ N L G+P+ ++
Sbjct: 132 EGLNGQELMGQPISVD 147
>sp|O01671|SXL_MEGSC Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3
Length = 321
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAALK 157
T LYV+NL +T++ + +F + G++ + I DK+ G P G A + + +R +A A+
Sbjct: 164 TNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAIS 223
Query: 158 RYNNVLLDG--KPMKIEVV 174
NNV+ +G +P+ + V
Sbjct: 224 ALNNVIPEGGTQPLTVRVA 242
>sp|B4NB54|NCBP2_DROWI Nuclear cap-binding protein subunit 2 OS=Drosophila willistoni
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR-PSGSAEVVYARRSDAFAALKRY 159
LYV NL T + I ELFS G+++ + DK + P G V Y RS+A +A++
Sbjct: 32 LYVGNLSFYTTEEQIHELFSRCGDVRLIVMGLDKYKKTPCGFCFVEYYTRSEAESAMRFV 91
Query: 160 NNVLLDGKPMKIE 172
N LD + ++++
Sbjct: 92 NGTRLDDRLIRVD 104
>sp|B0W939|NCBP2_CULQU Nuclear cap-binding protein subunit 2 OS=Culex quinquefasciatus
GN=Cbp20 PE=3 SV=1
Length = 160
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR-PSGSAEVVYARRSDAFAALK 157
+ LY+ NL T + I ELFS G+++R + DK + P G V Y R D+ A++
Sbjct: 34 STLYIGNLSFYTTEEQIHELFSRCGDIRRIVMGLDKFKKTPCGFCFVEYYARIDSEYAMR 93
Query: 158 RYNNVLLDGKPMKIE 172
N LD + ++++
Sbjct: 94 YINGTRLDDRIVRVD 108
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAALKR 158
+LYV +LH +T D +R +F G ++ + D + GR G + ++ A AL++
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 159 YNNVLLDGKPMKI 171
N L G+PMK+
Sbjct: 311 LNGFELAGRPMKV 323
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAALKR 158
+LYV +LH +T D +R +F G ++ + D + GR G + ++ A AL++
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 159 YNNVLLDGKPMKI 171
N L G+PMK+
Sbjct: 311 LNGFELAGRPMKV 323
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,542,197
Number of Sequences: 539616
Number of extensions: 3416445
Number of successful extensions: 16000
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 385
Number of HSP's that attempted gapping in prelim test: 14715
Number of HSP's gapped (non-prelim): 1453
length of query: 206
length of database: 191,569,459
effective HSP length: 112
effective length of query: 94
effective length of database: 131,132,467
effective search space: 12326451898
effective search space used: 12326451898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)