Query 028651
Match_columns 206
No_of_seqs 283 out of 1872
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 14:51:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0533 RRM motif-containing p 99.9 4E-22 8.7E-27 160.1 14.4 106 74-179 56-164 (243)
2 PLN03134 glycine-rich RNA-bind 99.9 2.1E-20 4.6E-25 140.7 14.0 86 96-181 32-118 (144)
3 KOG0121 Nuclear cap-binding pr 99.8 3.2E-18 7E-23 122.8 7.9 92 97-188 35-127 (153)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.7E-17 3.7E-22 141.6 12.9 82 97-178 268-350 (352)
5 TIGR01659 sex-lethal sex-letha 99.7 2.9E-17 6.3E-22 139.9 11.3 84 94-177 103-187 (346)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 3.6E-17 7.8E-22 139.7 11.9 82 97-178 2-84 (352)
7 PF00076 RRM_1: RNA recognitio 99.7 5.3E-17 1.1E-21 106.5 9.9 70 101-170 1-70 (70)
8 KOG0122 Translation initiation 99.7 4.1E-17 8.9E-22 128.9 9.8 81 97-177 188-269 (270)
9 KOG4207 Predicted splicing fac 99.7 4.4E-17 9.5E-22 125.9 8.9 86 92-177 7-93 (256)
10 TIGR01659 sex-lethal sex-letha 99.7 1.9E-16 4.2E-21 134.9 12.7 82 97-178 192-276 (346)
11 KOG0113 U1 small nuclear ribon 99.7 5.7E-16 1.2E-20 125.5 12.0 100 96-195 99-199 (335)
12 TIGR01622 SF-CC1 splicing fact 99.7 3.7E-15 8E-20 131.6 16.0 81 96-177 87-168 (457)
13 KOG0107 Alternative splicing f 99.7 3.8E-16 8.2E-21 117.8 8.2 78 97-178 9-86 (195)
14 PF14259 RRM_6: RNA recognitio 99.7 1.4E-15 2.9E-20 100.3 9.7 70 101-170 1-70 (70)
15 KOG0130 RNA-binding protein RB 99.6 9.1E-16 2E-20 111.3 8.4 83 95-177 69-152 (170)
16 PLN03120 nucleic acid binding 99.6 4.1E-15 8.8E-20 120.3 11.4 77 98-177 4-80 (260)
17 KOG0125 Ataxin 2-binding prote 99.6 2.6E-15 5.7E-20 123.1 8.9 81 96-177 94-174 (376)
18 TIGR01645 half-pint poly-U bin 99.6 6.5E-15 1.4E-19 132.5 12.0 82 97-178 203-285 (612)
19 KOG0149 Predicted RNA-binding 99.6 4.9E-15 1.1E-19 116.7 9.1 78 98-176 12-90 (247)
20 TIGR01645 half-pint poly-U bin 99.6 6E-15 1.3E-19 132.7 10.4 81 95-175 104-185 (612)
21 TIGR01628 PABP-1234 polyadenyl 99.6 8.3E-15 1.8E-19 132.6 11.4 79 99-177 1-80 (562)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.6 2.1E-14 4.5E-19 128.4 13.0 81 97-177 294-375 (509)
23 TIGR01622 SF-CC1 splicing fact 99.6 1.6E-14 3.6E-19 127.5 12.0 80 98-177 186-266 (457)
24 smart00362 RRM_2 RNA recogniti 99.6 2.5E-14 5.4E-19 93.0 9.6 72 100-172 1-72 (72)
25 TIGR01628 PABP-1234 polyadenyl 99.6 2E-14 4.4E-19 130.1 11.5 83 96-178 283-365 (562)
26 KOG0145 RNA-binding protein EL 99.6 1.6E-14 3.6E-19 115.3 9.2 84 96-179 39-123 (360)
27 TIGR01648 hnRNP-R-Q heterogene 99.6 1.7E-14 3.8E-19 129.4 10.5 79 97-175 57-136 (578)
28 PLN03121 nucleic acid binding 99.5 5.7E-14 1.2E-18 112.1 11.2 78 97-177 4-81 (243)
29 PLN03213 repressor of silencin 99.5 3.2E-14 7E-19 122.3 9.5 78 97-177 9-88 (759)
30 KOG0131 Splicing factor 3b, su 99.5 2.7E-14 5.9E-19 108.5 7.6 81 96-176 7-88 (203)
31 TIGR01648 hnRNP-R-Q heterogene 99.5 1.2E-13 2.6E-18 124.0 12.5 77 96-179 231-309 (578)
32 smart00360 RRM RNA recognition 99.5 9.1E-14 2E-18 90.0 8.8 70 103-172 1-71 (71)
33 cd00590 RRM RRM (RNA recogniti 99.5 2E-13 4.3E-18 89.2 10.4 74 100-173 1-74 (74)
34 KOG0117 Heterogeneous nuclear 99.5 8.1E-14 1.8E-18 118.4 10.1 83 96-178 81-165 (506)
35 KOG0126 Predicted RNA-binding 99.5 2.5E-15 5.4E-20 114.1 0.2 79 97-175 34-113 (219)
36 COG0724 RNA-binding proteins ( 99.5 1.6E-13 3.5E-18 111.0 10.4 79 98-176 115-194 (306)
37 KOG0114 Predicted RNA-binding 99.5 1.9E-13 4.2E-18 94.9 9.1 81 94-176 14-94 (124)
38 KOG0148 Apoptosis-promoting RN 99.5 1.5E-13 3.3E-18 110.3 9.8 79 96-179 162-240 (321)
39 KOG0105 Alternative splicing f 99.5 8.6E-14 1.9E-18 106.1 8.0 80 97-178 5-84 (241)
40 KOG4212 RNA-binding protein hn 99.5 2.1E-13 4.5E-18 115.8 11.1 79 98-176 44-123 (608)
41 KOG0117 Heterogeneous nuclear 99.5 7.5E-14 1.6E-18 118.6 7.9 95 78-179 236-333 (506)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 2.9E-13 6.3E-18 120.5 12.1 78 96-177 273-351 (481)
43 KOG0144 RNA-binding protein CU 99.5 4.3E-14 9.4E-19 119.6 6.0 85 97-181 123-210 (510)
44 KOG0148 Apoptosis-promoting RN 99.5 1.2E-13 2.6E-18 110.9 8.1 81 98-178 62-143 (321)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 4.6E-13 9.9E-18 119.3 10.6 77 97-178 1-79 (481)
46 KOG0108 mRNA cleavage and poly 99.4 2.8E-13 6E-18 117.7 8.7 80 99-178 19-99 (435)
47 KOG0111 Cyclophilin-type pepti 99.4 6E-14 1.3E-18 109.6 4.1 82 97-178 9-91 (298)
48 KOG0145 RNA-binding protein EL 99.4 1.5E-12 3.3E-17 104.1 10.8 84 94-177 274-358 (360)
49 KOG0127 Nucleolar protein fibr 99.4 8.4E-13 1.8E-17 114.7 8.9 81 98-178 117-197 (678)
50 KOG0127 Nucleolar protein fibr 99.4 1.3E-12 2.8E-17 113.6 10.0 84 96-179 290-380 (678)
51 KOG0144 RNA-binding protein CU 99.4 5.6E-13 1.2E-17 112.9 7.5 95 97-191 33-131 (510)
52 PF13893 RRM_5: RNA recognitio 99.4 2.4E-12 5.2E-17 81.2 8.3 56 115-174 1-56 (56)
53 smart00361 RRM_1 RNA recogniti 99.4 4.7E-12 1E-16 83.7 8.5 60 112-171 2-69 (70)
54 KOG0132 RNA polymerase II C-te 99.4 9.8E-12 2.1E-16 111.8 12.4 76 98-178 421-496 (894)
55 KOG0146 RNA-binding protein ET 99.3 1.5E-12 3.2E-17 104.6 5.5 83 96-178 283-366 (371)
56 KOG0124 Polypyrimidine tract-b 99.3 9.7E-13 2.1E-17 109.6 4.6 76 97-172 112-188 (544)
57 KOG0147 Transcriptional coacti 99.3 2.3E-12 5.1E-17 112.0 6.8 82 100-181 280-362 (549)
58 KOG0415 Predicted peptidyl pro 99.3 3.4E-12 7.4E-17 106.0 6.8 83 96-178 237-320 (479)
59 KOG0109 RNA-binding protein LA 99.3 3.8E-12 8.2E-17 103.2 6.3 73 99-178 3-75 (346)
60 KOG4206 Spliceosomal protein s 99.3 2.1E-11 4.6E-16 95.8 8.3 84 95-180 6-93 (221)
61 KOG0109 RNA-binding protein LA 99.3 7.2E-12 1.6E-16 101.6 5.3 76 96-178 76-151 (346)
62 KOG0123 Polyadenylate-binding 99.2 3.8E-11 8.1E-16 103.2 8.8 78 100-179 78-155 (369)
63 TIGR01642 U2AF_lg U2 snRNP aux 99.2 5E-11 1.1E-15 106.7 9.7 73 97-175 174-258 (509)
64 KOG4208 Nucleolar RNA-binding 99.2 7.2E-11 1.6E-15 91.6 8.4 81 97-177 48-130 (214)
65 KOG0131 Splicing factor 3b, su 99.1 1E-10 2.2E-15 89.1 6.5 86 93-178 91-178 (203)
66 KOG4212 RNA-binding protein hn 99.1 1.2E-10 2.6E-15 99.2 7.4 77 94-174 532-608 (608)
67 KOG0146 RNA-binding protein ET 99.1 8.4E-11 1.8E-15 94.6 5.3 83 97-179 18-103 (371)
68 KOG0123 Polyadenylate-binding 99.1 2.8E-10 6E-15 97.9 8.2 75 99-178 2-76 (369)
69 KOG0110 RNA-binding protein (R 99.1 2.8E-10 6E-15 101.8 8.3 78 98-175 515-596 (725)
70 KOG0153 Predicted RNA-binding 99.1 4.6E-10 9.9E-15 93.2 8.6 78 94-176 224-302 (377)
71 KOG0110 RNA-binding protein (R 99.1 1E-10 2.2E-15 104.5 4.6 82 98-179 613-695 (725)
72 KOG4661 Hsp27-ERE-TATA-binding 99.1 3.8E-10 8.3E-15 98.9 8.0 82 97-178 404-486 (940)
73 KOG4454 RNA binding protein (R 99.0 9.8E-11 2.1E-15 91.7 2.7 92 95-187 6-97 (267)
74 KOG0124 Polypyrimidine tract-b 99.0 6E-10 1.3E-14 93.2 7.4 81 98-178 210-291 (544)
75 KOG1548 Transcription elongati 99.0 1.7E-09 3.7E-14 89.7 8.4 82 96-177 132-221 (382)
76 KOG1457 RNA binding protein (c 99.0 7.5E-09 1.6E-13 81.5 10.0 83 97-179 33-120 (284)
77 KOG0116 RasGAP SH3 binding pro 99.0 3.9E-09 8.5E-14 91.5 9.3 80 98-178 288-368 (419)
78 KOG4205 RNA-binding protein mu 98.9 8.2E-10 1.8E-14 92.4 4.9 87 97-184 5-92 (311)
79 KOG0105 Alternative splicing f 98.9 4.3E-08 9.3E-13 75.2 13.0 71 98-174 115-187 (241)
80 KOG4209 Splicing factor RNPS1, 98.9 3.4E-09 7.4E-14 85.5 6.0 81 96-177 99-180 (231)
81 KOG4205 RNA-binding protein mu 98.9 5.7E-09 1.2E-13 87.4 6.7 86 97-183 96-182 (311)
82 PF04059 RRM_2: RNA recognitio 98.8 3.5E-08 7.6E-13 69.0 9.3 79 99-177 2-87 (97)
83 KOG0151 Predicted splicing reg 98.7 2.7E-08 5.8E-13 89.4 7.7 82 95-176 171-256 (877)
84 KOG0106 Alternative splicing f 98.7 9.6E-09 2.1E-13 81.4 4.1 72 99-177 2-73 (216)
85 KOG4660 Protein Mei2, essentia 98.7 1.6E-08 3.4E-13 88.7 4.5 70 97-170 74-143 (549)
86 KOG1995 Conserved Zn-finger pr 98.7 7.7E-08 1.7E-12 80.5 7.4 83 96-178 64-155 (351)
87 KOG0226 RNA-binding proteins [ 98.6 3.3E-08 7.2E-13 79.2 4.6 79 97-175 189-268 (290)
88 KOG1190 Polypyrimidine tract-b 98.5 4.3E-07 9.3E-12 77.2 8.7 77 98-178 297-374 (492)
89 KOG4211 Splicing factor hnRNP- 98.5 7.7E-07 1.7E-11 77.2 10.0 79 97-178 9-87 (510)
90 KOG4211 Splicing factor hnRNP- 98.5 6E-07 1.3E-11 77.9 7.6 79 96-175 101-180 (510)
91 KOG0120 Splicing factor U2AF, 98.4 1.8E-07 3.9E-12 82.4 4.4 83 96-178 287-370 (500)
92 PF11608 Limkain-b1: Limkain b 98.4 2E-06 4.4E-11 57.9 6.9 70 99-177 3-77 (90)
93 KOG4307 RNA binding protein RB 98.3 6.7E-06 1.4E-10 74.2 11.4 75 99-173 868-943 (944)
94 KOG1456 Heterogeneous nuclear 98.3 4.2E-06 9.1E-11 70.6 9.3 97 96-204 29-127 (494)
95 PF08777 RRM_3: RNA binding mo 98.3 1.6E-06 3.4E-11 61.7 5.8 72 99-175 2-78 (105)
96 KOG1456 Heterogeneous nuclear 98.3 3.6E-05 7.8E-10 65.1 13.9 86 92-181 281-367 (494)
97 KOG0106 Alternative splicing f 98.3 1.1E-06 2.4E-11 69.8 4.5 72 97-175 98-169 (216)
98 KOG0147 Transcriptional coacti 98.3 8.9E-07 1.9E-11 77.7 4.1 78 97-175 178-256 (549)
99 KOG4206 Spliceosomal protein s 98.2 5.4E-06 1.2E-10 65.6 7.9 77 95-175 143-220 (221)
100 KOG1457 RNA binding protein (c 98.2 2.3E-06 4.9E-11 67.7 5.1 68 94-164 206-273 (284)
101 COG5175 MOT2 Transcriptional r 98.0 1.7E-05 3.7E-10 66.2 6.4 79 98-176 114-202 (480)
102 KOG4849 mRNA cleavage factor I 98.0 6.6E-06 1.4E-10 68.9 3.7 73 99-171 81-156 (498)
103 KOG4210 Nuclear localization s 97.9 7.6E-06 1.6E-10 68.2 3.6 82 97-179 183-266 (285)
104 KOG1190 Polypyrimidine tract-b 97.9 3.9E-05 8.5E-10 65.5 7.0 79 96-177 412-491 (492)
105 KOG2314 Translation initiation 97.8 0.00011 2.4E-09 65.1 9.3 80 96-175 56-142 (698)
106 KOG1365 RNA-binding protein Fu 97.8 2.8E-05 6.2E-10 65.9 5.3 78 98-175 280-360 (508)
107 PF14605 Nup35_RRM_2: Nup53/35 97.8 7E-05 1.5E-09 46.5 5.5 52 99-156 2-53 (53)
108 KOG1548 Transcription elongati 97.8 0.00015 3.3E-09 60.7 9.1 80 96-178 263-353 (382)
109 KOG0128 RNA-binding protein SA 97.7 2.5E-05 5.3E-10 72.0 2.5 83 98-180 736-818 (881)
110 KOG0120 Splicing factor U2AF, 97.7 0.00013 2.8E-09 64.7 6.9 61 116-176 427-491 (500)
111 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00041 8.9E-09 48.8 8.1 76 98-175 6-90 (100)
112 KOG3152 TBP-binding protein, a 97.6 7.6E-05 1.6E-09 60.2 4.0 71 98-168 74-157 (278)
113 KOG2202 U2 snRNP splicing fact 97.6 3.3E-05 7.1E-10 62.3 1.9 63 113-175 83-146 (260)
114 KOG1855 Predicted RNA-binding 97.5 7.4E-05 1.6E-09 64.2 3.3 67 97-163 230-310 (484)
115 KOG0129 Predicted RNA-binding 97.4 0.00051 1.1E-08 60.4 7.4 68 91-158 363-432 (520)
116 KOG1365 RNA-binding protein Fu 97.4 0.00013 2.9E-09 61.9 3.5 72 99-171 162-237 (508)
117 PF08952 DUF1866: Domain of un 97.4 0.0011 2.4E-08 49.5 7.9 74 97-178 26-108 (146)
118 KOG2135 Proteins containing th 97.3 0.0002 4.3E-09 62.3 3.6 75 98-178 372-447 (526)
119 KOG4307 RNA binding protein RB 97.0 0.00047 1E-08 62.7 3.0 80 96-175 432-512 (944)
120 KOG4676 Splicing factor, argin 96.9 0.002 4.3E-08 55.1 5.7 74 99-173 8-85 (479)
121 KOG1996 mRNA splicing factor [ 96.9 0.0039 8.5E-08 51.5 7.2 63 113-175 301-365 (378)
122 KOG2416 Acinus (induces apopto 96.9 0.001 2.2E-08 59.5 3.6 81 93-178 439-523 (718)
123 KOG0112 Large RNA-binding prot 96.8 0.0017 3.7E-08 60.6 4.7 81 96-181 453-535 (975)
124 KOG2193 IGF-II mRNA-binding pr 96.8 0.0013 2.9E-08 56.7 3.6 74 99-178 2-77 (584)
125 KOG0129 Predicted RNA-binding 96.7 0.0061 1.3E-07 53.8 7.1 62 96-158 257-325 (520)
126 KOG0128 RNA-binding protein SA 96.6 8.2E-05 1.8E-09 68.7 -4.8 68 98-165 667-735 (881)
127 KOG0115 RNA-binding protein p5 96.6 0.0027 5.8E-08 51.4 4.1 75 99-173 32-110 (275)
128 PF08675 RNA_bind: RNA binding 96.6 0.011 2.4E-07 39.9 6.4 56 98-161 9-64 (87)
129 PF10309 DUF2414: Protein of u 96.6 0.017 3.7E-07 36.9 7.0 55 98-159 5-62 (62)
130 PF03467 Smg4_UPF3: Smg-4/UPF3 96.6 0.0069 1.5E-07 47.0 6.0 80 97-176 6-97 (176)
131 PF15023 DUF4523: Protein of u 96.5 0.019 4.1E-07 42.7 7.4 72 96-174 84-159 (166)
132 PF07078 FYTT: Forty-two-three 96.2 0.0019 4.1E-08 53.3 1.1 18 2-19 26-43 (316)
133 KOG2068 MOT2 transcription fac 96.1 0.0016 3.5E-08 54.6 0.4 80 99-178 78-164 (327)
134 KOG0112 Large RNA-binding prot 95.7 0.0035 7.6E-08 58.6 0.6 82 94-175 368-449 (975)
135 KOG2591 c-Mpl binding protein, 95.6 0.026 5.7E-07 50.5 5.4 71 98-174 175-249 (684)
136 PF04847 Calcipressin: Calcipr 95.5 0.043 9.3E-07 42.9 5.9 61 111-176 8-70 (184)
137 PF03880 DbpA: DbpA RNA bindin 95.4 0.061 1.3E-06 35.5 5.7 60 107-174 10-74 (74)
138 PF07576 BRAP2: BRCA1-associat 95.3 0.33 7.1E-06 34.7 9.4 68 98-166 12-81 (110)
139 KOG4660 Protein Mei2, essentia 94.9 0.054 1.2E-06 48.4 5.3 81 98-178 388-474 (549)
140 KOG2253 U1 snRNP complex, subu 94.8 0.02 4.3E-07 52.1 2.6 73 93-173 35-107 (668)
141 KOG4285 Mitotic phosphoprotein 94.7 0.083 1.8E-06 44.0 5.6 69 98-173 197-266 (350)
142 KOG4210 Nuclear localization s 93.9 0.047 1E-06 45.7 2.8 82 97-178 87-169 (285)
143 KOG2318 Uncharacterized conser 93.0 0.47 1E-05 42.9 7.5 84 95-178 171-309 (650)
144 PF11767 SET_assoc: Histone ly 92.9 0.7 1.5E-05 29.9 6.4 55 109-171 11-65 (66)
145 KOG0804 Cytoplasmic Zn-finger 92.8 0.55 1.2E-05 41.3 7.5 69 97-166 73-142 (493)
146 KOG4574 RNA-binding protein (c 92.5 0.1 2.2E-06 49.0 2.8 74 100-178 300-375 (1007)
147 KOG2193 IGF-II mRNA-binding pr 86.4 0.034 7.3E-07 48.3 -4.8 79 97-177 79-157 (584)
148 KOG4019 Calcineurin-mediated s 82.2 1 2.2E-05 35.0 2.0 75 98-177 10-90 (193)
149 KOG4410 5-formyltetrahydrofola 80.8 14 0.00031 30.9 8.3 48 98-149 330-377 (396)
150 KOG1295 Nonsense-mediated deca 77.7 2.8 6E-05 36.2 3.5 67 98-164 7-77 (376)
151 PF03468 XS: XS domain; Inter 76.9 8.7 0.00019 27.6 5.5 56 100-157 10-75 (116)
152 PF10567 Nab6_mRNP_bdg: RNA-re 75.4 9.5 0.00021 31.9 5.9 79 97-175 14-106 (309)
153 KOG2295 C2H2 Zn-finger protein 74.4 0.41 8.8E-06 43.1 -2.4 73 97-169 230-303 (648)
154 KOG4676 Splicing factor, argin 71.3 0.55 1.2E-05 40.6 -2.2 74 99-176 152-225 (479)
155 PF07530 PRE_C2HC: Associated 69.3 11 0.00024 24.4 4.0 61 113-176 2-64 (68)
156 PF02714 DUF221: Domain of unk 67.7 6.2 0.00013 33.2 3.4 36 142-179 1-36 (325)
157 smart00596 PRE_C2HC PRE_C2HC d 67.4 9 0.0002 24.9 3.3 60 113-175 2-63 (69)
158 KOG4454 RNA binding protein (R 65.3 1.2 2.7E-05 35.7 -1.3 67 98-164 80-150 (267)
159 PF15513 DUF4651: Domain of un 64.0 21 0.00046 22.7 4.4 22 113-134 9-30 (62)
160 COG5638 Uncharacterized conser 62.8 30 0.00064 30.5 6.5 82 95-176 143-297 (622)
161 KOG4483 Uncharacterized conser 62.3 18 0.00038 31.8 5.0 55 98-158 391-446 (528)
162 KOG4365 Uncharacterized conser 62.1 1.1 2.4E-05 39.4 -2.2 79 99-178 4-83 (572)
163 PRK11634 ATP-dependent RNA hel 61.4 44 0.00095 31.3 7.9 70 99-176 487-562 (629)
164 KOG4213 RNA-binding protein La 59.9 14 0.00029 28.9 3.6 67 99-170 112-180 (205)
165 COG0724 RNA-binding proteins ( 57.2 14 0.00031 28.9 3.6 63 94-156 221-284 (306)
166 PTZ00146 fibrillarin; Provisio 55.0 23 0.00049 29.9 4.4 17 140-156 204-220 (293)
167 PF00403 HMA: Heavy-metal-asso 51.6 53 0.0012 19.9 6.5 54 100-158 1-58 (62)
168 KOG4008 rRNA processing protei 50.7 14 0.0003 30.0 2.4 33 96-128 38-70 (261)
169 PF07292 NID: Nmi/IFP 35 domai 49.3 38 0.00081 23.2 4.1 23 97-119 51-73 (88)
170 PRK10629 EnvZ/OmpR regulon mod 47.3 1.1E+02 0.0024 22.3 8.0 72 97-175 34-109 (127)
171 PRK11901 hypothetical protein; 46.6 54 0.0012 28.0 5.4 59 98-161 245-306 (327)
172 PF03439 Spt5-NGN: Early trans 46.0 38 0.00082 22.7 3.7 36 124-163 33-68 (84)
173 PF14893 PNMA: PNMA 45.2 24 0.00052 30.3 3.2 54 95-149 15-72 (331)
174 PF09707 Cas_Cas2CT1978: CRISP 36.6 89 0.0019 21.2 4.3 49 97-147 24-72 (86)
175 PRK11230 glycolate oxidase sub 35.0 1.4E+02 0.0031 27.0 6.7 49 112-160 203-255 (499)
176 COG5193 LHP1 La protein, small 33.3 17 0.00037 31.8 0.5 59 99-157 175-244 (438)
177 COG2608 CopZ Copper chaperone 30.8 1.5E+02 0.0032 18.9 5.5 55 99-158 4-62 (71)
178 cd04908 ACT_Bt0572_1 N-termina 30.6 1.3E+02 0.0029 18.4 7.4 47 113-163 16-63 (66)
179 KOG2891 Surface glycoprotein [ 30.6 1E+02 0.0022 25.9 4.5 84 94-177 145-268 (445)
180 PF11823 DUF3343: Protein of u 30.5 63 0.0014 20.8 2.8 24 141-164 3-26 (73)
181 PRK08559 nusG transcription an 29.9 1.9E+02 0.004 21.6 5.7 35 125-163 36-70 (153)
182 KOG0226 RNA-binding proteins [ 29.5 23 0.0005 29.2 0.6 81 98-178 96-179 (290)
183 KOG2187 tRNA uracil-5-methyltr 29.5 66 0.0014 29.3 3.5 40 139-178 63-102 (534)
184 KOG3424 40S ribosomal protein 29.1 1.5E+02 0.0032 21.6 4.5 53 101-154 23-84 (132)
185 PF11411 DNA_ligase_IV: DNA li 28.4 47 0.001 18.7 1.5 16 108-123 19-34 (36)
186 COG0030 KsgA Dimethyladenosine 28.0 1.1E+02 0.0023 25.4 4.3 28 98-125 95-122 (259)
187 PRK10905 cell division protein 27.1 1.8E+02 0.0038 25.0 5.4 58 99-161 248-308 (328)
188 KOG0156 Cytochrome P450 CYP2 s 26.7 1.3E+02 0.0029 27.2 5.1 59 102-169 36-97 (489)
189 PRK01178 rps24e 30S ribosomal 26.6 2E+02 0.0043 20.1 4.8 46 108-154 29-80 (99)
190 PTZ00071 40S ribosomal protein 25.8 1.9E+02 0.0042 21.3 4.8 45 109-154 35-86 (132)
191 PF12643 MazG-like: MazG-like 23.6 24 0.00053 24.6 -0.2 16 1-16 51-69 (98)
192 PRK11558 putative ssRNA endonu 21.3 2E+02 0.0042 20.1 3.9 50 97-148 26-75 (97)
193 PF00398 RrnaAD: Ribosomal RNA 21.2 1.2E+02 0.0026 24.7 3.5 24 97-120 96-119 (262)
194 cd04880 ACT_AAAH-PDT-like ACT 21.1 2.3E+02 0.0049 17.8 6.6 50 112-161 13-66 (75)
195 CHL00123 rps6 ribosomal protei 21.1 2.8E+02 0.0062 18.9 7.9 67 100-170 10-91 (97)
196 KOG3428 Small nuclear ribonucl 21.0 43 0.00093 23.7 0.6 7 8-14 74-80 (109)
197 PF05189 RTC_insert: RNA 3'-te 20.9 2.9E+02 0.0062 18.9 5.0 47 100-146 12-64 (103)
198 cd00027 BRCT Breast Cancer Sup 20.5 1.7E+02 0.0038 17.1 3.4 26 99-124 2-27 (72)
199 PF06515 BDV_P10: Borna diseas 20.5 77 0.0017 21.1 1.7 17 1-17 1-17 (87)
200 PF04026 SpoVG: SpoVG; InterP 20.1 2.1E+02 0.0045 19.3 3.8 25 124-148 2-27 (84)
No 1
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.89 E-value=4e-22 Score=160.07 Aligned_cols=106 Identities=46% Similarity=0.767 Sum_probs=90.2
Q ss_pred CCCCCCc--hhhhhhhhhcC-CCCCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHH
Q 028651 74 RNFPWQH--DLFEDSLRAAG-ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRS 150 (206)
Q Consensus 74 ~~~~w~~--~~~~~~~~~~~-~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~ 150 (206)
.+..|+| +.+........ .......++|+|.|||+.|+++||+++|..|+.++.+.|+++++|.+.|+|-|.|...+
T Consensus 56 ~~~~w~~~~~v~~~~~~~~~~~~~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~ 135 (243)
T KOG0533|consen 56 IDGKWQHDRDVFRSAKRLGAVGINETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRD 135 (243)
T ss_pred CCCcccchHHHHhcccccccccccCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchH
Confidence 4678999 55554443211 12344558999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEEecCCCC
Q 028651 151 DAFAALKRYNNVLLDGKPMKIEVVGTNAE 179 (206)
Q Consensus 151 ~A~~Ai~~l~g~~i~g~~i~V~~a~~~~~ 179 (206)
+|..|++.||++.++|..|++.+..+...
T Consensus 136 DA~~avk~~~gv~ldG~~mk~~~i~~~~~ 164 (243)
T KOG0533|consen 136 DAERAVKKYNGVALDGRPMKIEIISSPSQ 164 (243)
T ss_pred hHHHHHHHhcCcccCCceeeeEEecCccc
Confidence 99999999999999999999999876654
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=2.1e-20 Score=140.70 Aligned_cols=86 Identities=22% Similarity=0.442 Sum_probs=80.6
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
..+++|||+|||++++|++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 356899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 028651 175 GTNAEIP 181 (206)
Q Consensus 175 ~~~~~~~ 181 (206)
.+....+
T Consensus 112 ~~~~~~~ 118 (144)
T PLN03134 112 NDRPSAP 118 (144)
T ss_pred CcCCCCC
Confidence 8766544
No 3
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=3.2e-18 Score=122.84 Aligned_cols=92 Identities=30% Similarity=0.410 Sum_probs=82.8
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
.++||||+||++.++|+.|.++|+.+|+|..|.|-.|+ +..++|||||+|.+.++|+.|++.++++.++.++|.|.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 58999999999999999999999999999999999999 78899999999999999999999999999999999999987
Q ss_pred CCCCCCccccccC
Q 028651 176 TNAEIPLQARVNV 188 (206)
Q Consensus 176 ~~~~~~~~~r~~~ 188 (206)
.-.+..+-.|...
T Consensus 115 GF~eGRQyGRG~s 127 (153)
T KOG0121|consen 115 GFVEGRQYGRGKS 127 (153)
T ss_pred cchhhhhhcCCCC
Confidence 6555444444443
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.75 E-value=1.7e-17 Score=141.65 Aligned_cols=82 Identities=21% Similarity=0.297 Sum_probs=78.0
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
.+.+|||+|||+++++++|+++|++||.|.+|+|+.+. ++.++|||||+|.+.++|.+||+.|||..|+|+.|+|.|+.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 34579999999999999999999999999999999999 99999999999999999999999999999999999999998
Q ss_pred CCC
Q 028651 176 TNA 178 (206)
Q Consensus 176 ~~~ 178 (206)
.+.
T Consensus 348 ~~~ 350 (352)
T TIGR01661 348 NKA 350 (352)
T ss_pred CCC
Confidence 754
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.73 E-value=2.9e-17 Score=139.90 Aligned_cols=84 Identities=26% Similarity=0.369 Sum_probs=79.0
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEE
Q 028651 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (206)
Q Consensus 94 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 172 (206)
.....++|||+|||+++++++|+++|+.||+|+.|+|+.+. +++++|||||+|.++++|++||+.||+..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 33467999999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred EecCC
Q 028651 173 VVGTN 177 (206)
Q Consensus 173 ~a~~~ 177 (206)
++++.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 98764
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.73 E-value=3.6e-17 Score=139.65 Aligned_cols=82 Identities=32% Similarity=0.464 Sum_probs=78.1
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
+.++|||+|||+++++++|+++|+.||+|.+|+|+.++ +|+++|||||+|.+.++|++||+.||+..|.|+.|+|+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999998 89999999999999999999999999999999999999997
Q ss_pred CCC
Q 028651 176 TNA 178 (206)
Q Consensus 176 ~~~ 178 (206)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 654
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.72 E-value=5.3e-17 Score=106.54 Aligned_cols=70 Identities=31% Similarity=0.613 Sum_probs=67.3
Q ss_pred EEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEE
Q 028651 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (206)
Q Consensus 101 l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~ 170 (206)
|||+|||+++++++|+++|+.||.|..+.+..+.++...++|||+|.+.++|++|++.||+..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999988888999999999999999999999999999999885
No 8
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=4.1e-17 Score=128.86 Aligned_cols=81 Identities=28% Similarity=0.386 Sum_probs=78.6
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
..++|.|.||+.+++|++|.++|..||.|..|.|..|+ +|.++|||||+|.+.++|.+||+.|||+-++.-.|.|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 46899999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CC
Q 028651 176 TN 177 (206)
Q Consensus 176 ~~ 177 (206)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 75
No 9
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.71 E-value=4.4e-17 Score=125.91 Aligned_cols=86 Identities=27% Similarity=0.389 Sum_probs=81.3
Q ss_pred CCCCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEE
Q 028651 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (206)
Q Consensus 92 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~ 170 (206)
+++++..++|.|-||.+-|+.++|..+|++||.|.+|.|+.|+ |+.++|||||-|....+|+.|+++|+|.+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 5566778999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EEEecCC
Q 028651 171 IEVVGTN 177 (206)
Q Consensus 171 V~~a~~~ 177 (206)
|++|+-.
T Consensus 87 Vq~aryg 93 (256)
T KOG4207|consen 87 VQMARYG 93 (256)
T ss_pred ehhhhcC
Confidence 9999743
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.70 E-value=1.9e-16 Score=134.87 Aligned_cols=82 Identities=32% Similarity=0.583 Sum_probs=76.3
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCC--eeEEEEE
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDG--KPMKIEV 173 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g--~~i~V~~ 173 (206)
..++|||.|||++++|++|+++|++||.|+.|.|+.++ +++++|||||+|.+.++|++||+.||+..+.+ +.|+|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45789999999999999999999999999999999998 89999999999999999999999999999876 6899999
Q ss_pred ecCCC
Q 028651 174 VGTNA 178 (206)
Q Consensus 174 a~~~~ 178 (206)
+....
T Consensus 272 a~~~~ 276 (346)
T TIGR01659 272 AEEHG 276 (346)
T ss_pred CCccc
Confidence 88654
No 11
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=5.7e-16 Score=125.49 Aligned_cols=100 Identities=26% Similarity=0.396 Sum_probs=93.1
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
++=+||||.-|+++++|..|+..|+.||+|+.|.|+.++ +|+++|||||+|..+.+...|.+..+|.+|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 566899999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred cCCCCCCccccccCCCCCCCC
Q 028651 175 GTNAEIPLQARVNVTGVNGRR 195 (206)
Q Consensus 175 ~~~~~~~~~~r~~~~g~~g~g 195 (206)
......-.-+|...+|.+|+.
T Consensus 179 RgRTvkgW~PRRLGGGLGg~r 199 (335)
T KOG0113|consen 179 RGRTVKGWLPRRLGGGLGGRR 199 (335)
T ss_pred ccccccccccccccCCcCCcc
Confidence 988877788888877766655
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.66 E-value=3.7e-15 Score=131.60 Aligned_cols=81 Identities=21% Similarity=0.354 Sum_probs=75.6
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
...++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||. |+|..|.|+.|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 457899999999999999999999999999999999998 89999999999999999999996 7999999999999887
Q ss_pred cCC
Q 028651 175 GTN 177 (206)
Q Consensus 175 ~~~ 177 (206)
...
T Consensus 166 ~~~ 168 (457)
T TIGR01622 166 QAE 168 (457)
T ss_pred chh
Confidence 643
No 13
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=3.8e-16 Score=117.83 Aligned_cols=78 Identities=26% Similarity=0.369 Sum_probs=73.0
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
-.++|||+||+..+++.||+.+|..||+|..|.|-.. +.|||||+|+++.+|+.|+..|||..|+|..|.|++++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 3689999999999999999999999999999988775 678999999999999999999999999999999999986
Q ss_pred CC
Q 028651 177 NA 178 (206)
Q Consensus 177 ~~ 178 (206)
..
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 54
No 14
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.65 E-value=1.4e-15 Score=100.33 Aligned_cols=70 Identities=33% Similarity=0.596 Sum_probs=65.1
Q ss_pred EEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEE
Q 028651 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (206)
Q Consensus 101 l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~ 170 (206)
|||+|||+++++++|.++|+.||.|..+.+..++++..+++|||+|.+.++|++|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999998888999999999999999999999999999999874
No 15
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=9.1e-16 Score=111.25 Aligned_cols=83 Identities=27% Similarity=0.418 Sum_probs=78.4
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
.-.+..|||++++..++|++|.+.|..||+|+.+.+..|+ +|..+|||+|+|++.++|++|+..+||..|.++.|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 3456789999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred ecCC
Q 028651 174 VGTN 177 (206)
Q Consensus 174 a~~~ 177 (206)
+...
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 8754
No 16
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.62 E-value=4.1e-15 Score=120.31 Aligned_cols=77 Identities=22% Similarity=0.243 Sum_probs=71.3
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 177 (206)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. .+|||||+|.++++|+.|+. |||..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999998863 56899999999999999995 8999999999999998743
No 17
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=2.6e-15 Score=123.06 Aligned_cols=81 Identities=21% Similarity=0.379 Sum_probs=75.6
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
+..++|+|+|||+..-+-||+.+|.+||.|.+|.|+.+..| +|||+||+|++.++|++|-++|||..+.|++|+|..++
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 34579999999999999999999999999999999998744 78999999999999999999999999999999999988
Q ss_pred CC
Q 028651 176 TN 177 (206)
Q Consensus 176 ~~ 177 (206)
..
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 64
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.60 E-value=6.5e-15 Score=132.49 Aligned_cols=82 Identities=20% Similarity=0.339 Sum_probs=77.8
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
..++|||+|||+++++++|+++|+.||.|.+|+|..++ ++.++|||||+|.+.++|.+||+.||+..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 35799999999999999999999999999999999998 78899999999999999999999999999999999999998
Q ss_pred CCC
Q 028651 176 TNA 178 (206)
Q Consensus 176 ~~~ 178 (206)
+++
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 654
No 19
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=4.9e-15 Score=116.68 Aligned_cols=78 Identities=26% Similarity=0.395 Sum_probs=73.0
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
-++|||++|++.+..++|+++|++||+|++..|+.|+ +|+++||+||+|.+.+.|++||+. .+-.|+|++..+.+|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 4799999999999999999999999999999999999 999999999999999999999987 56789999988888764
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.59 E-value=6e-15 Score=132.71 Aligned_cols=81 Identities=26% Similarity=0.447 Sum_probs=76.3
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
....++|||+||++++++++|+++|..||.|.+|.|+.++ +++++|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 3456899999999999999999999999999999999998 899999999999999999999999999999999999986
Q ss_pred ec
Q 028651 174 VG 175 (206)
Q Consensus 174 a~ 175 (206)
..
T Consensus 184 p~ 185 (612)
T TIGR01645 184 PS 185 (612)
T ss_pred cc
Confidence 44
No 21
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.59 E-value=8.3e-15 Score=132.64 Aligned_cols=79 Identities=30% Similarity=0.442 Sum_probs=75.2
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 177 (206)
.+|||+|||+++||++|.++|+.||.|.+|+|+.+. +++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+..+
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 379999999999999999999999999999999998 7999999999999999999999999999999999999998643
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.58 E-value=2.1e-14 Score=128.38 Aligned_cols=81 Identities=22% Similarity=0.312 Sum_probs=76.6
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
..++|||+|||+.+++++|+++|+.||.|..+.|+.+. +|.++|||||+|.+.++|+.||+.|||..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 35799999999999999999999999999999999997 89999999999999999999999999999999999999986
Q ss_pred CC
Q 028651 176 TN 177 (206)
Q Consensus 176 ~~ 177 (206)
..
T Consensus 374 ~~ 375 (509)
T TIGR01642 374 VG 375 (509)
T ss_pred cC
Confidence 43
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.58 E-value=1.6e-14 Score=127.48 Aligned_cols=80 Identities=30% Similarity=0.534 Sum_probs=76.2
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
.++|||+|||+.+++++|+++|+.||.|..|.++.+. +|.++|||||+|.+.++|++|++.|||..|.|+.|+|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 5899999999999999999999999999999999998 779999999999999999999999999999999999999774
Q ss_pred C
Q 028651 177 N 177 (206)
Q Consensus 177 ~ 177 (206)
.
T Consensus 266 ~ 266 (457)
T TIGR01622 266 S 266 (457)
T ss_pred C
Confidence 3
No 24
>smart00362 RRM_2 RNA recognition motif.
Probab=99.57 E-value=2.5e-14 Score=93.05 Aligned_cols=72 Identities=38% Similarity=0.657 Sum_probs=67.3
Q ss_pred EEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEE
Q 028651 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (206)
Q Consensus 100 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 172 (206)
+|||.|||..+++++|+++|..||.|..+.+..++ +.+.++|||+|.+.++|+.|++.+++..+.++.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998877 6788999999999999999999999999999998873
No 25
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.56 E-value=2e-14 Score=130.12 Aligned_cols=83 Identities=31% Similarity=0.547 Sum_probs=78.6
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
...++|||+||++++++++|+++|+.||.|.+|+++.+.++.++|||||+|.+.++|++|++.||+..|+|+.|.|.++.
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 028651 176 TNA 178 (206)
Q Consensus 176 ~~~ 178 (206)
.+.
T Consensus 363 ~k~ 365 (562)
T TIGR01628 363 RKE 365 (562)
T ss_pred CcH
Confidence 643
No 26
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.6e-14 Score=115.30 Aligned_cols=84 Identities=32% Similarity=0.486 Sum_probs=80.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
+..+.|.|.-||.++|+++|+.+|...|+|++|+++.|+ +|.+.||+||.|-++++|++||..|||..+..+.|+|.|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 345789999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 028651 175 GTNAE 179 (206)
Q Consensus 175 ~~~~~ 179 (206)
++.++
T Consensus 119 RPSs~ 123 (360)
T KOG0145|consen 119 RPSSD 123 (360)
T ss_pred cCChh
Confidence 98764
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.56 E-value=1.7e-14 Score=129.38 Aligned_cols=79 Identities=22% Similarity=0.388 Sum_probs=73.3
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeC-CeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~-g~~i~V~~a~ 175 (206)
..++|||+|||++++|++|.++|++||.|..|+|+.|.++.++|||||+|.+.++|++||+.||+..|. ++.|.|.++.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 569999999999999999999999999999999999999999999999999999999999999999885 7777776654
No 28
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.55 E-value=5.7e-14 Score=112.07 Aligned_cols=78 Identities=21% Similarity=0.224 Sum_probs=70.7
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
.+.+|||+||++.+|+++|++||+.||.|.+|.|+.+. ...+||||+|.++++|+.|+ .|+|..|.++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~--et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG--EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC--CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 46899999999999999999999999999999999884 45689999999999999999 6899999999999987654
Q ss_pred C
Q 028651 177 N 177 (206)
Q Consensus 177 ~ 177 (206)
.
T Consensus 81 y 81 (243)
T PLN03121 81 Y 81 (243)
T ss_pred c
Confidence 3
No 29
>PLN03213 repressor of silencing 3; Provisional
Probab=99.54 E-value=3.2e-14 Score=122.29 Aligned_cols=78 Identities=21% Similarity=0.351 Sum_probs=71.7
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccH--HHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARR--SDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~--~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
...+|||+||++.+++++|..+|+.||.|..|.|+. .+| +|||||+|... .++.+||..|||..+.|+.|+|..|
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR-ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR-TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec-ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 458999999999999999999999999999999993 266 89999999987 6899999999999999999999999
Q ss_pred cCC
Q 028651 175 GTN 177 (206)
Q Consensus 175 ~~~ 177 (206)
++.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 864
No 30
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.53 E-value=2.7e-14 Score=108.48 Aligned_cols=81 Identities=27% Similarity=0.396 Sum_probs=77.3
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
+...||||+||+..++++.|+++|-+.|+|..++++.++ +..+.|||||+|.++|+|+-||+.||..+|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 457899999999999999999999999999999999999 8889999999999999999999999999999999999998
Q ss_pred cC
Q 028651 175 GT 176 (206)
Q Consensus 175 ~~ 176 (206)
..
T Consensus 87 s~ 88 (203)
T KOG0131|consen 87 SA 88 (203)
T ss_pred cc
Confidence 73
No 31
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.52 E-value=1.2e-13 Score=123.99 Aligned_cols=77 Identities=27% Similarity=0.344 Sum_probs=70.8
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhcc--CCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEI--GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~--G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
....+|||+||++++++++|+++|+.| |.|+.|.++. +||||+|.+.++|++|++.||+..|+|+.|+|.|
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345789999999999999999999999 9999998764 5999999999999999999999999999999999
Q ss_pred ecCCCC
Q 028651 174 VGTNAE 179 (206)
Q Consensus 174 a~~~~~ 179 (206)
+++...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 987653
No 32
>smart00360 RRM RNA recognition motif.
Probab=99.52 E-value=9.1e-14 Score=89.97 Aligned_cols=70 Identities=40% Similarity=0.654 Sum_probs=65.8
Q ss_pred EeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEE
Q 028651 103 VSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (206)
Q Consensus 103 V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 172 (206)
|+|||..+++++|+++|+.||.|..+.+..++ ++.++++|||+|.+.++|..|++.|++..+.++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988 68899999999999999999999999999999998873
No 33
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.52 E-value=2e-13 Score=89.20 Aligned_cols=74 Identities=39% Similarity=0.631 Sum_probs=69.4
Q ss_pred EEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 100 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
+|+|+|||+.+++++|+++|..+|.|..+.+..++.....++|||+|.+.++|..|++.+++..+.++.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999888657789999999999999999999999999999999864
No 34
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=8.1e-14 Score=118.39 Aligned_cols=83 Identities=27% Similarity=0.444 Sum_probs=78.1
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCcee-CCeeEEEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLL-DGKPMKIEV 173 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i-~g~~i~V~~ 173 (206)
..++-|||+.||.++.|++|.-+|.+.|+|-+++|+.|+ +|.++|||||+|.+.++|++||+.||+++| .|+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 568999999999999999999999999999999999998 999999999999999999999999999998 689999988
Q ss_pred ecCCC
Q 028651 174 VGTNA 178 (206)
Q Consensus 174 a~~~~ 178 (206)
+..+.
T Consensus 161 Svan~ 165 (506)
T KOG0117|consen 161 SVANC 165 (506)
T ss_pred eeecc
Confidence 77544
No 35
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=2.5e-15 Score=114.08 Aligned_cols=79 Identities=24% Similarity=0.427 Sum_probs=74.9
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
.+.-|||+|||+.+||.||..+|++||+|+.|.++.|+ ||+++||||+.|++.....-|+..|||..|.|+.|+|.-..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 46789999999999999999999999999999999999 99999999999999999999999999999999999997654
No 36
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.50 E-value=1.6e-13 Score=110.99 Aligned_cols=79 Identities=32% Similarity=0.554 Sum_probs=76.1
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
.++|||+|||+.+++++|.++|..||.|..+.+..++ ++.++|||||+|.+.++|..|++.+++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5999999999999999999999999999999999997 999999999999999999999999999999999999999653
No 37
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=1.9e-13 Score=94.88 Aligned_cols=81 Identities=26% Similarity=0.345 Sum_probs=73.3
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 94 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
++..+..|||.|||+.+|.+++.++|.+||.|..|+|-..+. .+|.|||.|++..+|.+|+++|+|..++++.+.|-+
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~--TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE--TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC--cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 445678999999999999999999999999999999877653 578999999999999999999999999999999987
Q ss_pred ecC
Q 028651 174 VGT 176 (206)
Q Consensus 174 a~~ 176 (206)
-.+
T Consensus 92 yq~ 94 (124)
T KOG0114|consen 92 YQP 94 (124)
T ss_pred cCH
Confidence 654
No 38
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.5e-13 Score=110.26 Aligned_cols=79 Identities=25% Similarity=0.387 Sum_probs=74.1
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
..+|+|||+||+..++|++|+++|+.||+|.+|+|..+ +||+||.|.+.|.|..||..+|+.+|.|+.++..|-+
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGK 236 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGK 236 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccc
Confidence 36899999999999999999999999999999999985 6899999999999999999999999999999999998
Q ss_pred CCCC
Q 028651 176 TNAE 179 (206)
Q Consensus 176 ~~~~ 179 (206)
+..+
T Consensus 237 e~~~ 240 (321)
T KOG0148|consen 237 EGDD 240 (321)
T ss_pred cCCC
Confidence 7554
No 39
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=8.6e-14 Score=106.12 Aligned_cols=80 Identities=21% Similarity=0.334 Sum_probs=71.9
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
..++|||+|||.++.+.+|+++|.+||.|..|.+...+. ...||||+|+++.+|+.||..-+|..++|..|.|+++..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g--~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG--PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC--CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 468999999999999999999999999999998755432 346999999999999999999999999999999999986
Q ss_pred CC
Q 028651 177 NA 178 (206)
Q Consensus 177 ~~ 178 (206)
-.
T Consensus 83 gr 84 (241)
T KOG0105|consen 83 GR 84 (241)
T ss_pred CC
Confidence 53
No 40
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.50 E-value=2.1e-13 Score=115.77 Aligned_cols=79 Identities=19% Similarity=0.424 Sum_probs=74.7
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHh-ccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFS-EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~-~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
.+.+||+|||+++.|++|+++|. +.|+|.+|.+..|.+|+++|||.|+|+++|.+++|++.||.+.+.|++|+|.-..+
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 45699999999999999999995 78999999999999999999999999999999999999999999999999987665
No 41
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=7.5e-14 Score=118.60 Aligned_cols=95 Identities=28% Similarity=0.434 Sum_probs=82.5
Q ss_pred CCchhhhhhhhhcCCCC---CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHH
Q 028651 78 WQHDLFEDSLRAAGISG---IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFA 154 (206)
Q Consensus 78 w~~~~~~~~~~~~~~~~---~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~ 154 (206)
|.|....+|..+....+ ...-..|||.||+.+|||+.|+++|+.||.|..|+.+.| ||||.|.+.++|.+
T Consensus 236 wgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davk 308 (506)
T KOG0117|consen 236 WGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVK 308 (506)
T ss_pred cCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHH
Confidence 88888777775543332 233467999999999999999999999999999998866 99999999999999
Q ss_pred HHHHhCCceeCCeeEEEEEecCCCC
Q 028651 155 ALKRYNNVLLDGKPMKIEVVGTNAE 179 (206)
Q Consensus 155 Ai~~l~g~~i~g~~i~V~~a~~~~~ 179 (206)
|++.+|+.+|+|..|.|.+|++...
T Consensus 309 Am~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 309 AMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred HHHHhcCceecCceEEEEecCChhh
Confidence 9999999999999999999998653
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.49 E-value=2.9e-13 Score=120.51 Aligned_cols=78 Identities=29% Similarity=0.350 Sum_probs=72.4
Q ss_pred CCCCEEEEeCCCC-CCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.++++|||+||++ .+++++|+++|+.||.|..|+++.+ .+|||||+|.+.++|+.|++.||+..|.|+.|+|.++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 4678999999998 6999999999999999999999886 3689999999999999999999999999999999998
Q ss_pred cCC
Q 028651 175 GTN 177 (206)
Q Consensus 175 ~~~ 177 (206)
+..
T Consensus 349 ~~~ 351 (481)
T TIGR01649 349 KQQ 351 (481)
T ss_pred ccc
Confidence 754
No 43
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=4.3e-14 Score=119.61 Aligned_cols=85 Identities=28% Similarity=0.463 Sum_probs=78.1
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCc-eeCCe--eEEEEE
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNV-LLDGK--PMKIEV 173 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~-~i~g~--~i~V~~ 173 (206)
...+|||+-|+..+||.+++++|++||.|++|.|.++..+.++|||||+|.+.+.|..||+.||+. ++.|. +|.|.|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 367899999999999999999999999999999999999999999999999999999999999994 56664 899999
Q ss_pred ecCCCCCC
Q 028651 174 VGTNAEIP 181 (206)
Q Consensus 174 a~~~~~~~ 181 (206)
|.++.++.
T Consensus 203 ADtqkdk~ 210 (510)
T KOG0144|consen 203 ADTQKDKD 210 (510)
T ss_pred cccCCCch
Confidence 99876544
No 44
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.2e-13 Score=110.85 Aligned_cols=81 Identities=22% Similarity=0.427 Sum_probs=77.7
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
...|||+.|...++.++|++.|.+||+|.+++|++|. +++++||+||.|.+.++|+.||..|||..|+++.|+..||.-
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 4579999999999999999999999999999999999 999999999999999999999999999999999999999986
Q ss_pred CC
Q 028651 177 NA 178 (206)
Q Consensus 177 ~~ 178 (206)
++
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 55
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.45 E-value=4.6e-13 Score=119.27 Aligned_cols=77 Identities=17% Similarity=0.172 Sum_probs=69.9
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHh--CCceeCCeeEEEEEe
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY--NNVLLDGKPMKIEVV 174 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l--~g~~i~g~~i~V~~a 174 (206)
++++|||+|||+++++++|+++|+.||.|..|.++. .++||||+|.+.++|++|++.| ++..|.|+.|.|.|+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 368999999999999999999999999999999986 3579999999999999999975 678999999999999
Q ss_pred cCCC
Q 028651 175 GTNA 178 (206)
Q Consensus 175 ~~~~ 178 (206)
....
T Consensus 76 ~~~~ 79 (481)
T TIGR01649 76 TSQE 79 (481)
T ss_pred CCcc
Confidence 7543
No 46
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.45 E-value=2.8e-13 Score=117.69 Aligned_cols=80 Identities=16% Similarity=0.446 Sum_probs=77.4
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 177 (206)
+.|||+|||+++++++|..+|+..|.|..+++++|+ +|+++||+|++|.+.++|+.|++.||+.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999 9999999999999999999999999999999999999998754
Q ss_pred C
Q 028651 178 A 178 (206)
Q Consensus 178 ~ 178 (206)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 47
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=6e-14 Score=109.60 Aligned_cols=82 Identities=24% Similarity=0.370 Sum_probs=78.6
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
..++|||++|...++|.-|...|-+||.|..|.++.|. +++++||+||+|...|+|.+||..||+.+|.|+.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 46899999999999999999999999999999999998 99999999999999999999999999999999999999998
Q ss_pred CCC
Q 028651 176 TNA 178 (206)
Q Consensus 176 ~~~ 178 (206)
|..
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 754
No 48
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=1.5e-12 Score=104.13 Aligned_cols=84 Identities=19% Similarity=0.266 Sum_probs=78.1
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEE
Q 028651 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (206)
Q Consensus 94 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 172 (206)
.+..+.+|||-||.++++|.-|+++|.+||.|..|+|+.|. +.+++||+||++.+.++|..||..|||..+.++.|.|.
T Consensus 274 ~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs 353 (360)
T KOG0145|consen 274 GPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 353 (360)
T ss_pred CCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence 33457899999999999999999999999999999999999 68999999999999999999999999999999999999
Q ss_pred EecCC
Q 028651 173 VVGTN 177 (206)
Q Consensus 173 ~a~~~ 177 (206)
+...+
T Consensus 354 FKtnk 358 (360)
T KOG0145|consen 354 FKTNK 358 (360)
T ss_pred EecCC
Confidence 87653
No 49
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=8.4e-13 Score=114.73 Aligned_cols=81 Identities=26% Similarity=0.417 Sum_probs=76.9
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 177 (206)
...|.|.|||+.+.+.+|+.+|+.||.|..|.|+....|+.+|||||+|....+|.+|++.||+.+|+|++|-|.||-+.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 57899999999999999999999999999999998778888899999999999999999999999999999999999865
Q ss_pred C
Q 028651 178 A 178 (206)
Q Consensus 178 ~ 178 (206)
.
T Consensus 197 d 197 (678)
T KOG0127|consen 197 D 197 (678)
T ss_pred c
Confidence 4
No 50
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=1.3e-12 Score=113.62 Aligned_cols=84 Identities=32% Similarity=0.490 Sum_probs=76.6
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHh-----CC-ceeCCee
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRY-----NN-VLLDGKP 168 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l-----~g-~~i~g~~ 168 (206)
.-..+|||.|||+++|+++|.++|++||+|.++.++.++ |+.++|+|||.|.+..+|++||+.- .+ +.|+|+.
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~ 369 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL 369 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence 345899999999999999999999999999999999999 9999999999999999999999875 33 6799999
Q ss_pred EEEEEecCCCC
Q 028651 169 MKIEVVGTNAE 179 (206)
Q Consensus 169 i~V~~a~~~~~ 179 (206)
|+|.++-+..+
T Consensus 370 Lkv~~Av~Rke 380 (678)
T KOG0127|consen 370 LKVTLAVTRKE 380 (678)
T ss_pred EeeeeccchHH
Confidence 99999887553
No 51
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=5.6e-13 Score=112.95 Aligned_cols=95 Identities=26% Similarity=0.440 Sum_probs=80.5
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCc-eeCC--eeEEEE
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNV-LLDG--KPMKIE 172 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~-~i~g--~~i~V~ 172 (206)
..-++||+-||..++|.||+++|++||.|.+|.|++|+ ++.++|||||.|.+.++|.+|+.+||+. .|.| .+|.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 45789999999999999999999999999999999999 9999999999999999999999999985 4554 578888
Q ss_pred EecCCCCCCccccccCCCC
Q 028651 173 VVGTNAEIPLQARVNVTGV 191 (206)
Q Consensus 173 ~a~~~~~~~~~~r~~~~g~ 191 (206)
+|....+.-.-+++.+.|.
T Consensus 113 ~Ad~E~er~~~e~KLFvg~ 131 (510)
T KOG0144|consen 113 YADGERERIVEERKLFVGM 131 (510)
T ss_pred ccchhhhccccchhhhhhh
Confidence 8876444333355555553
No 52
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.40 E-value=2.4e-12 Score=81.23 Aligned_cols=56 Identities=34% Similarity=0.535 Sum_probs=50.9
Q ss_pred HHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 115 IRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 115 L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
|.++|++||+|..+.+..+. .++|||+|.+.++|+.|++.||+..++|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997653 579999999999999999999999999999999986
No 53
>smart00361 RRM_1 RNA recognition motif.
Probab=99.36 E-value=4.7e-12 Score=83.66 Aligned_cols=60 Identities=27% Similarity=0.474 Sum_probs=54.4
Q ss_pred HHHHHHHHh----ccCCeEEEE-EEECC-C--CCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEE
Q 028651 112 NDDIRELFS----EIGELKRYA-IHFDK-N--GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (206)
Q Consensus 112 e~~L~~~F~----~~G~v~~v~-i~~~~-~--g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 171 (206)
+++|+++|+ .||.|.+|. +..++ + +.++||+||+|.+.++|.+|++.|||..++|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999995 66665 5 889999999999999999999999999999999986
No 54
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.35 E-value=9.8e-12 Score=111.82 Aligned_cols=76 Identities=32% Similarity=0.470 Sum_probs=71.6
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 177 (206)
++||||+.|+..++|.||..+|+.||+|.+|.++. +++||||++...++|++|+..|.+..+..+.|+|.|+...
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 57999999999999999999999999999999986 5789999999999999999999999999999999999864
Q ss_pred C
Q 028651 178 A 178 (206)
Q Consensus 178 ~ 178 (206)
-
T Consensus 496 G 496 (894)
T KOG0132|consen 496 G 496 (894)
T ss_pred C
Confidence 4
No 55
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=1.5e-12 Score=104.56 Aligned_cols=83 Identities=16% Similarity=0.297 Sum_probs=79.4
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
+.+|.|||-.||.+..+.||.++|-.||.|.+.++..|+ +..+++|+||.|+++..|+.||..|||+.|+-++|+|.+.
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 468999999999999999999999999999999999999 8899999999999999999999999999999999999998
Q ss_pred cCCC
Q 028651 175 GTNA 178 (206)
Q Consensus 175 ~~~~ 178 (206)
+++.
T Consensus 363 RPkd 366 (371)
T KOG0146|consen 363 RPKD 366 (371)
T ss_pred Cccc
Confidence 8765
No 56
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=9.7e-13 Score=109.62 Aligned_cols=76 Identities=28% Similarity=0.479 Sum_probs=73.7
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEE
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 172 (206)
-.|+|||+.|.+.+.|+.|+..|..||+|+++.+.+|+ +++++|||||+|+-+|.|+-|++.||+..++|+.|+|.
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 35899999999999999999999999999999999999 99999999999999999999999999999999999996
No 57
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.33 E-value=2.3e-12 Score=112.04 Aligned_cols=82 Identities=30% Similarity=0.547 Sum_probs=77.1
Q ss_pred EEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 028651 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (206)
Q Consensus 100 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 178 (206)
.|||+||++++++++|..+|+.||.|..|.+..+. +|.++||+||+|.+.++|.+|++.|||.+|-|+.|+|.......
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 48999999999999999999999999999999998 99999999999999999999999999999999999999987655
Q ss_pred CCC
Q 028651 179 EIP 181 (206)
Q Consensus 179 ~~~ 181 (206)
...
T Consensus 360 ~~~ 362 (549)
T KOG0147|consen 360 DTK 362 (549)
T ss_pred ccc
Confidence 443
No 58
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3.4e-12 Score=105.97 Aligned_cols=83 Identities=20% Similarity=0.390 Sum_probs=78.6
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
++...|||-.|.+-++.++|.-+|+.||.|..|.|+.+. +|.+..||||+|++.+++++|.-.|++..|+.+.|+|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 567899999999999999999999999999999999998 9999999999999999999999999999999999999998
Q ss_pred cCCC
Q 028651 175 GTNA 178 (206)
Q Consensus 175 ~~~~ 178 (206)
.+-.
T Consensus 317 QSVs 320 (479)
T KOG0415|consen 317 QSVS 320 (479)
T ss_pred hhhh
Confidence 7543
No 59
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.31 E-value=3.8e-12 Score=103.23 Aligned_cols=73 Identities=22% Similarity=0.368 Sum_probs=69.8
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 178 (206)
.+|||+|||..+++.+|+.+|++||.|.+|.|+++ |+||..++...|+.||..||+.+|+|..|.|+-++.++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 57999999999999999999999999999999986 99999999999999999999999999999999998874
No 60
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.26 E-value=2.1e-11 Score=95.79 Aligned_cols=84 Identities=27% Similarity=0.502 Sum_probs=75.0
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHH----HHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEE
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRE----LFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~----~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~ 170 (206)
..+..||||.||+..+..++|+. +|++||.|..|.+.. +.+.+|-|||.|.+.+.|..|+..|+|..+.|+.|+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 34556999999999999998877 999999999987664 567899999999999999999999999999999999
Q ss_pred EEEecCCCCC
Q 028651 171 IEVVGTNAEI 180 (206)
Q Consensus 171 V~~a~~~~~~ 180 (206)
|+||+.+++-
T Consensus 84 iqyA~s~sdi 93 (221)
T KOG4206|consen 84 IQYAKSDSDI 93 (221)
T ss_pred eecccCccch
Confidence 9999987753
No 61
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.25 E-value=7.2e-12 Score=101.60 Aligned_cols=76 Identities=30% Similarity=0.457 Sum_probs=71.7
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
...++|+|+||.+.++..+|++.|++||+|.+|.|+.+ |+||.|+-.++|..|++.||+.+|+|+.|+|++++
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 45789999999999999999999999999999999876 99999999999999999999999999999999998
Q ss_pred CCC
Q 028651 176 TNA 178 (206)
Q Consensus 176 ~~~ 178 (206)
+..
T Consensus 149 srl 151 (346)
T KOG0109|consen 149 SRL 151 (346)
T ss_pred ccc
Confidence 654
No 62
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=3.8e-11 Score=103.23 Aligned_cols=78 Identities=26% Similarity=0.488 Sum_probs=73.8
Q ss_pred EEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecCCCC
Q 028651 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAE 179 (206)
Q Consensus 100 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~~ 179 (206)
.|||.||+++++..+|.++|+.||+|.+|++..+.+| ++|| ||+|++++.|++|++.|||..+.++.|.|........
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 3999999999999999999999999999999999988 9999 9999999999999999999999999999988876554
No 63
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.22 E-value=5e-11 Score=106.66 Aligned_cols=73 Identities=15% Similarity=0.317 Sum_probs=60.7
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhcc------------CCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCcee
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEI------------GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL 164 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~------------G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i 164 (206)
..++|||+|||+.+|+++|.++|..+ +.|..+.+. ..+|||||+|.+.++|+.|| .|||..|
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-----~~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-----KEKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-----CCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 35789999999999999999999875 234444443 35789999999999999999 5899999
Q ss_pred CCeeEEEEEec
Q 028651 165 DGKPMKIEVVG 175 (206)
Q Consensus 165 ~g~~i~V~~a~ 175 (206)
.|..|+|....
T Consensus 248 ~g~~l~v~r~~ 258 (509)
T TIGR01642 248 SNVFLKIRRPH 258 (509)
T ss_pred eCceeEecCcc
Confidence 99999997544
No 64
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.20 E-value=7.2e-11 Score=91.61 Aligned_cols=81 Identities=23% Similarity=0.370 Sum_probs=74.7
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhcc-CCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEI-GELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~-G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
...-+||..+|..+.+.+|..+|.+| |.|..+++.+++ ||.++|||||+|++++.|+-|.+.||++.|.++.|.+.+.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45678999999999999999999888 778888887887 9999999999999999999999999999999999999998
Q ss_pred cCC
Q 028651 175 GTN 177 (206)
Q Consensus 175 ~~~ 177 (206)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 875
No 65
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.14 E-value=1e-10 Score=89.14 Aligned_cols=86 Identities=28% Similarity=0.410 Sum_probs=76.9
Q ss_pred CCCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEE-EEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEE
Q 028651 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR-YAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (206)
Q Consensus 93 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~ 170 (206)
.....+..|||+||.+.++|..|.+.|+.||.+.. -++.++. +|.++||+||.|++.+.+.+|+..+|+..+..++|+
T Consensus 91 ~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~it 170 (203)
T KOG0131|consen 91 KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPIT 170 (203)
T ss_pred ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceE
Confidence 34456789999999999999999999999998765 5777887 799999999999999999999999999999999999
Q ss_pred EEEecCCC
Q 028651 171 IEVVGTNA 178 (206)
Q Consensus 171 V~~a~~~~ 178 (206)
|.++....
T Consensus 171 v~ya~k~~ 178 (203)
T KOG0131|consen 171 VSYAFKKD 178 (203)
T ss_pred EEEEEecC
Confidence 99997543
No 66
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.14 E-value=1.2e-10 Score=99.23 Aligned_cols=77 Identities=27% Similarity=0.333 Sum_probs=69.3
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 94 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
.....|+|||.|||+++||+.|++-|..||.|.++.|+. +|+++| .|.|.++++|+.||..|++..++|+.|+|.|
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime--~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME--NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc--cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 345679999999999999999999999999999998843 567776 8999999999999999999999999999987
Q ss_pred e
Q 028651 174 V 174 (206)
Q Consensus 174 a 174 (206)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 67
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=8.4e-11 Score=94.58 Aligned_cols=83 Identities=24% Similarity=0.446 Sum_probs=75.5
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCc-eeCC--eeEEEEE
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNV-LLDG--KPMKIEV 173 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~-~i~g--~~i~V~~ 173 (206)
..++|||+-|...-.|+|++.+|..||.|.+|.+....+|.++|||||.|.+..+|+.||..|||. ++-| ..|.|.+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 468999999999999999999999999999999999999999999999999999999999999994 4555 4799999
Q ss_pred ecCCCC
Q 028651 174 VGTNAE 179 (206)
Q Consensus 174 a~~~~~ 179 (206)
+..+.+
T Consensus 98 ADTdkE 103 (371)
T KOG0146|consen 98 ADTDKE 103 (371)
T ss_pred ccchHH
Confidence 987654
No 68
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=2.8e-10 Score=97.91 Aligned_cols=75 Identities=31% Similarity=0.391 Sum_probs=70.9
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 178 (206)
..|||+ +++||..|.++|+.+|+|.+++++.|. + +.|||||.|.++++|++|++.||...+.|++|.|.|+..++
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 468998 999999999999999999999999999 6 99999999999999999999999999999999999987655
No 69
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=2.8e-10 Score=101.82 Aligned_cols=78 Identities=32% Similarity=0.459 Sum_probs=71.5
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCC----CceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR----PSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~----~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
.++|||.||+++++.++|..+|...|.|..+.|...++.. +.||+||+|.+.++|+.|++.|+|+.|+|+.|.|++
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 3459999999999999999999999999999888776443 459999999999999999999999999999999999
Q ss_pred ec
Q 028651 174 VG 175 (206)
Q Consensus 174 a~ 175 (206)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 98
No 70
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=4.6e-10 Score=93.15 Aligned_cols=78 Identities=27% Similarity=0.398 Sum_probs=68.7
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHH-hCCceeCCeeEEEE
Q 028651 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR-YNNVLLDGKPMKIE 172 (206)
Q Consensus 94 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~-l~g~~i~g~~i~V~ 172 (206)
......+|||++|-..++|.+|.++|.+||+|.++.+... +++|||+|.+.+.|+.|.+. +|...|+|..|+|.
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 3445679999999999999999999999999999998874 46999999999999988765 56577999999999
Q ss_pred EecC
Q 028651 173 VVGT 176 (206)
Q Consensus 173 ~a~~ 176 (206)
|..+
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9988
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=1e-10 Score=104.53 Aligned_cols=82 Identities=24% Similarity=0.363 Sum_probs=76.7
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
.++|+|.|||+..+-.+++++|..||.|..|+|+... .+.++|||||+|-++.+|.+|+++|..+.|.|+.|.++|+..
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 5799999999999999999999999999999998874 567899999999999999999999999999999999999997
Q ss_pred CCC
Q 028651 177 NAE 179 (206)
Q Consensus 177 ~~~ 179 (206)
+..
T Consensus 693 d~~ 695 (725)
T KOG0110|consen 693 DNT 695 (725)
T ss_pred chH
Confidence 663
No 72
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.07 E-value=3.8e-10 Score=98.94 Aligned_cols=82 Identities=18% Similarity=0.316 Sum_probs=75.4
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
-++.|||.+|...+-..+|+.+|++||.|+-.+|+.+. +--.++|+||++.+.++|.+||+.||.+.|.|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 35789999999999999999999999999999999887 66678899999999999999999999999999999999987
Q ss_pred CCC
Q 028651 176 TNA 178 (206)
Q Consensus 176 ~~~ 178 (206)
..+
T Consensus 484 NEp 486 (940)
T KOG4661|consen 484 NEP 486 (940)
T ss_pred cCc
Confidence 544
No 73
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=9.8e-11 Score=91.67 Aligned_cols=92 Identities=23% Similarity=0.279 Sum_probs=81.5
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.+...||||.|+-..++|+-|.++|-+.|+|..|.|..++.++.+ ||||+|.++....-|++.+||..+.+..|.|.+-
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 345689999999999999999999999999999999999988888 9999999999999999999999999999999887
Q ss_pred cCCCCCCcccccc
Q 028651 175 GTNAEIPLQARVN 187 (206)
Q Consensus 175 ~~~~~~~~~~r~~ 187 (206)
...+..++..|..
T Consensus 85 ~G~shapld~r~~ 97 (267)
T KOG4454|consen 85 CGNSHAPLDERVT 97 (267)
T ss_pred cCCCcchhhhhcc
Confidence 7665555544443
No 74
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=6e-10 Score=93.17 Aligned_cols=81 Identities=20% Similarity=0.350 Sum_probs=75.3
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
=.+|||..++++++|+||+.+|+.||+|.+|.+-.++ .+.++||+|++|.+......||..||-+.++|+-|+|-.+-.
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 4789999999999999999999999999999999999 578999999999999999999999999999999999977655
Q ss_pred CC
Q 028651 177 NA 178 (206)
Q Consensus 177 ~~ 178 (206)
++
T Consensus 290 PP 291 (544)
T KOG0124|consen 290 PP 291 (544)
T ss_pred CC
Confidence 44
No 75
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.00 E-value=1.7e-09 Score=89.73 Aligned_cols=82 Identities=29% Similarity=0.425 Sum_probs=75.8
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEE--------EEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKR--------YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK 167 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~ 167 (206)
..++.|||+|||.++|.+++.++|++||-|.. |++..+..|..+|=|.+.|...++.+-|++.|++..|.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 45688999999999999999999999998864 8899999999999999999999999999999999999999
Q ss_pred eEEEEEecCC
Q 028651 168 PMKIEVVGTN 177 (206)
Q Consensus 168 ~i~V~~a~~~ 177 (206)
.|+|+.|+-+
T Consensus 212 ~~rVerAkfq 221 (382)
T KOG1548|consen 212 KLRVERAKFQ 221 (382)
T ss_pred EEEEehhhhh
Confidence 9999998743
No 76
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.95 E-value=7.5e-09 Score=81.45 Aligned_cols=83 Identities=23% Similarity=0.322 Sum_probs=69.7
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-C-CCCceEEEEEEccHHHHHHHHHHhCCceeC---CeeEEE
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-N-GRPSGSAEVVYARRSDAFAALKRYNNVLLD---GKPMKI 171 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~-g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~---g~~i~V 171 (206)
.-+||||.+||.++...+|..+|..|--.+.+.+.+.. . ...+-+|||+|.+.++|++|++.|||..|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 45899999999999999999999988666666655443 2 234469999999999999999999999986 678999
Q ss_pred EEecCCCC
Q 028651 172 EVVGTNAE 179 (206)
Q Consensus 172 ~~a~~~~~ 179 (206)
+++++...
T Consensus 113 ElAKSNtK 120 (284)
T KOG1457|consen 113 ELAKSNTK 120 (284)
T ss_pred eehhcCcc
Confidence 99998664
No 77
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.95 E-value=3.9e-09 Score=91.50 Aligned_cols=80 Identities=20% Similarity=0.385 Sum_probs=69.4
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
..+|||.|||+++++.+|+++|..||+|+...|..-. .++..+|+||+|.+.++++.||++ +-..|++++|.|+..++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 4569999999999999999999999999997776644 444448999999999999999998 67889999999999876
Q ss_pred CC
Q 028651 177 NA 178 (206)
Q Consensus 177 ~~ 178 (206)
..
T Consensus 367 ~~ 368 (419)
T KOG0116|consen 367 GF 368 (419)
T ss_pred cc
Confidence 44
No 78
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.95 E-value=8.2e-10 Score=92.42 Aligned_cols=87 Identities=24% Similarity=0.350 Sum_probs=77.1
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
..++|||++|++.++++.|++.|.+||+|.+|.++.++ +++++||+||+|++.+...+++.. .-+.|+|+.|.+.-+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 56899999999999999999999999999999999999 899999999999998888888765 5678999999999888
Q ss_pred CCCCCCccc
Q 028651 176 TNAEIPLQA 184 (206)
Q Consensus 176 ~~~~~~~~~ 184 (206)
+........
T Consensus 84 ~r~~~~~~~ 92 (311)
T KOG4205|consen 84 SREDQTKVG 92 (311)
T ss_pred Ccccccccc
Confidence 766544333
No 79
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=4.3e-08 Score=75.21 Aligned_cols=71 Identities=24% Similarity=0.368 Sum_probs=60.7
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeC--CeeEEEEEe
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD--GKPMKIEVV 174 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~--g~~i~V~~a 174 (206)
...|.|++||++.+|+||++++.+.|.|+...+..| |++.|+|...|+.+-|+..|+...+. |....+.+.
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~ 187 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVR 187 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEec
Confidence 477999999999999999999999999999998876 58999999999999999999987764 444444443
No 80
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.88 E-value=3.4e-09 Score=85.51 Aligned_cols=81 Identities=25% Similarity=0.309 Sum_probs=75.7
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.....+||+|+.+.++.+++..+|+.||.|..+.|..++ .+.++||+||+|.+.+.++.|+. ||+..|.+..|+|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 356899999999999999999999999999999999999 77899999999999999999999 8999999999999988
Q ss_pred cCC
Q 028651 175 GTN 177 (206)
Q Consensus 175 ~~~ 177 (206)
...
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 765
No 81
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.85 E-value=5.7e-09 Score=87.38 Aligned_cols=86 Identities=20% Similarity=0.369 Sum_probs=77.8
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
...+|||++||.+++++++++.|.+||.|..+.+++|. +...+||+||+|.+++.+.+++.. +-+.|+++.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeecc
Confidence 35699999999999999999999999999999999998 889999999999999999988866 7789999999999999
Q ss_pred CCCCCCcc
Q 028651 176 TNAEIPLQ 183 (206)
Q Consensus 176 ~~~~~~~~ 183 (206)
++...+..
T Consensus 175 pk~~~~~~ 182 (311)
T KOG4205|consen 175 PKEVMQST 182 (311)
T ss_pred chhhcccc
Confidence 88765533
No 82
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.84 E-value=3.5e-08 Score=68.95 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=68.3
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhc--cCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeC----CeeEEE
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSE--IGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLD----GKPMKI 171 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~--~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~----g~~i~V 171 (206)
+||.|.|||...+.++|.+++.. .|....+.++.|- +..+.|||||.|.+++.|.+-.+.++|.... .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 78999999999999999988853 3677788999987 8889999999999999999999999998764 457788
Q ss_pred EEecCC
Q 028651 172 EVVGTN 177 (206)
Q Consensus 172 ~~a~~~ 177 (206)
.+|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 887754
No 83
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.75 E-value=2.7e-08 Score=89.37 Aligned_cols=82 Identities=27% Similarity=0.361 Sum_probs=74.3
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCC----CCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEE
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN----GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~----g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~ 170 (206)
.+..+.|||+||++.++++.|...|..||+|..|+|++.++ ....-|+||.|-+..+|++|++.|+|..+.+..|+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 34567899999999999999999999999999999999873 34556999999999999999999999999999999
Q ss_pred EEEecC
Q 028651 171 IEVVGT 176 (206)
Q Consensus 171 V~~a~~ 176 (206)
+-|.+.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999854
No 84
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=9.6e-09 Score=81.39 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=66.6
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 177 (206)
..|||++||+.+.+.+|++||..||.+..|.+.. ||+||+|.+..+|..||..||+..|.+..+.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN-------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec-------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4699999999999999999999999999998754 69999999999999999999999999999999998854
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=1.6e-08 Score=88.69 Aligned_cols=70 Identities=30% Similarity=0.333 Sum_probs=64.1
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEE
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~ 170 (206)
+..+|+|.|||.++++++|..+|+.||+|..|+.-.. ..|.+||+|.+..+|+.|++.|++..|.|+.|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4579999999999999999999999999999766544 568999999999999999999999999999888
No 86
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.66 E-value=7.7e-08 Score=80.49 Aligned_cols=83 Identities=25% Similarity=0.394 Sum_probs=75.7
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEE--------EEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCC
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKR--------YAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g 166 (206)
....+|||.+||..+++++|.++|.+|+.|.. |.|..++ |+..+|-|.|+|.++..|+.||.-|++..+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 35679999999999999999999999998853 6777777 99999999999999999999999999999999
Q ss_pred eeEEEEEecCCC
Q 028651 167 KPMKIEVVGTNA 178 (206)
Q Consensus 167 ~~i~V~~a~~~~ 178 (206)
..|+|.++....
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999999988665
No 87
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.64 E-value=3.3e-08 Score=79.15 Aligned_cols=79 Identities=18% Similarity=0.358 Sum_probs=73.8
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
...+||.+.|..+++++.|...|.+|-.....+++.++ +|+++||+||.|.+.+++..|+..|||..++.++|++..+.
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 46799999999999999999999999988889999998 99999999999999999999999999999999999886554
No 88
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.53 E-value=4.3e-07 Score=77.21 Aligned_cols=77 Identities=26% Similarity=0.370 Sum_probs=69.2
Q ss_pred CCEEEEeCCC-CCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 98 GTKLYVSNLH-PGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 98 ~~~l~V~nLp-~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
++.|.|.||. +.+|.+.|..+|..||.|.+|+|.+++ +--|+|.|.+...|+-|+++|+|..+.|+.|+|.+++-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 6788999995 559999999999999999999999985 24899999999999999999999999999999999874
Q ss_pred CC
Q 028651 177 NA 178 (206)
Q Consensus 177 ~~ 178 (206)
..
T Consensus 373 ~~ 374 (492)
T KOG1190|consen 373 TN 374 (492)
T ss_pred cc
Confidence 33
No 89
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.52 E-value=7.7e-07 Score=77.23 Aligned_cols=79 Identities=24% Similarity=0.370 Sum_probs=66.6
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
...-|.+.+|||++|++||.+||+.+ .|..+.+.. .+|+..|-|||+|.+.+++++|++. |...+..+-|.|--+..
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR-RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec-cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCC
Confidence 45678889999999999999999999 577744433 2789999999999999999999987 77888888999988765
Q ss_pred CC
Q 028651 177 NA 178 (206)
Q Consensus 177 ~~ 178 (206)
.+
T Consensus 86 ~e 87 (510)
T KOG4211|consen 86 AE 87 (510)
T ss_pred cc
Confidence 44
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.45 E-value=6e-07 Score=77.91 Aligned_cols=79 Identities=22% Similarity=0.300 Sum_probs=66.9
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEE-EEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKR-YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.....|.+.+||+.||++||.+||+..-.|.. +.++.+..++++|-|||.|++.+.|++|+.. |...|..+-|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 35578999999999999999999997744444 5677777889999999999999999999987 777888888888665
Q ss_pred c
Q 028651 175 G 175 (206)
Q Consensus 175 ~ 175 (206)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 91
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.45 E-value=1.8e-07 Score=82.44 Aligned_cols=83 Identities=25% Similarity=0.353 Sum_probs=77.1
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
....++||++||..+++.++.+++..||.+....++.+. +|.++||||.+|.++.....|+..|||..+.++.|.|+.|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 345689999999999999999999999999999999998 7999999999999999999999999999999999999988
Q ss_pred cCCC
Q 028651 175 GTNA 178 (206)
Q Consensus 175 ~~~~ 178 (206)
....
T Consensus 367 ~~g~ 370 (500)
T KOG0120|consen 367 IVGA 370 (500)
T ss_pred hccc
Confidence 7544
No 92
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.37 E-value=2e-06 Score=57.85 Aligned_cols=70 Identities=26% Similarity=0.311 Sum_probs=48.5
Q ss_pred CEEEEeCCCCCCcHHHH----HHHHhccC-CeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 99 TKLYVSNLHPGVTNDDI----RELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L----~~~F~~~G-~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
+.|+|.|||.+.+...| ++++..|| .|..| ..+.|+|-|.+.+.|.+|.+.|+|..+.|+.|.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 56999999999887654 56666776 66665 235899999999999999999999999999999999
Q ss_pred ecCC
Q 028651 174 VGTN 177 (206)
Q Consensus 174 a~~~ 177 (206)
....
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 8543
No 93
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.33 E-value=6.7e-06 Score=74.23 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=67.3
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCe-EEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGEL-KRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v-~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
+.|-+.|+|++++-+||.+||..|-.+ .+|.+.++..|..+|-|.|.|++.++|.+|...|++..|..+.|++.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 378899999999999999999999544 457777777899999999999999999999999999999999998865
No 94
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.31 E-value=4.2e-06 Score=70.63 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=74.8
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHh--CCceeCCeeEEEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY--NNVLLDGKPMKIEV 173 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l--~g~~i~g~~i~V~~ 173 (206)
.++..|+|.+|...++|.||.+.++.||+|..|.++.. +..|.|+|++.+.|++++..- +...+.|+..-+.+
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~-----~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH-----KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc-----cceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 45678999999999999999999999999999988764 448999999999999997642 34567888877877
Q ss_pred ecCCCCCCccccccCCCCCCCCCceeEeeec
Q 028651 174 VGTNAEIPLQARVNVTGVNGRRKRTVVMTYV 204 (206)
Q Consensus 174 a~~~~~~~~~~r~~~~g~~g~g~~~v~~~~~ 204 (206)
++++ ++..+|.-......|+++.+
T Consensus 104 Stsq-------~i~R~g~es~~pN~VLl~TI 127 (494)
T KOG1456|consen 104 STSQ-------CIERPGDESATPNKVLLFTI 127 (494)
T ss_pred chhh-------hhccCCCCCCCCCeEEEEEe
Confidence 7643 33344555555566776654
No 95
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.31 E-value=1.6e-06 Score=61.73 Aligned_cols=72 Identities=25% Similarity=0.367 Sum_probs=45.3
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCC-----ceeCCeeEEEEE
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN-----VLLDGKPMKIEV 173 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g-----~~i~g~~i~V~~ 173 (206)
+.|+|.+++..++.++|+++|+.||.|.+|.+....+ .|||-|.+.+.|+.|++.+.- ..|.+..+++++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~-----~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT-----EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S-----EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC-----EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 6789999999999999999999999999988866432 899999999999999887643 356777777665
Q ss_pred ec
Q 028651 174 VG 175 (206)
Q Consensus 174 a~ 175 (206)
-.
T Consensus 77 Le 78 (105)
T PF08777_consen 77 LE 78 (105)
T ss_dssp --
T ss_pred CC
Confidence 43
No 96
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.27 E-value=3.6e-05 Score=65.11 Aligned_cols=86 Identities=26% Similarity=0.290 Sum_probs=74.2
Q ss_pred CCCCCCCCEEEEeCCCCC-CcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEE
Q 028651 92 ISGIEVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (206)
Q Consensus 92 ~~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~ 170 (206)
+.+..+++.++|-+|... ++.+.|..+|..||.|..|++++.+ .|.|.|++.+..+.++|+..||+..+-|.+|.
T Consensus 281 p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 281 PGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 345567899999999765 6667899999999999999999874 46899999999999999999999999999999
Q ss_pred EEEecCCCCCC
Q 028651 171 IEVVGTNAEIP 181 (206)
Q Consensus 171 V~~a~~~~~~~ 181 (206)
|++++.....+
T Consensus 357 v~~SkQ~~v~~ 367 (494)
T KOG1456|consen 357 VCVSKQNFVSP 367 (494)
T ss_pred Eeecccccccc
Confidence 99988655443
No 97
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.26 E-value=1.1e-06 Score=69.75 Aligned_cols=72 Identities=25% Similarity=0.345 Sum_probs=63.7
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
..+.+.|.|++..+.+.+|.++|+.+|.+....+ ..+++||+|.+.++|..|+..|++..+.++.|++....
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhhhcchhccchhhcCceeeecccC
Confidence 4688999999999999999999999999855444 24599999999999999999999999999999995544
No 98
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.25 E-value=8.9e-07 Score=77.75 Aligned_cols=78 Identities=21% Similarity=0.297 Sum_probs=72.2
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
...+||+.-|+..+++.+|.+||+.+|.|..|.++.|+ ++.++|.|||+|.+.+....|| .|.|..+.|.+|.|....
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccH
Confidence 45789999999999999999999999999999999999 8999999999999999999998 679999999999998754
No 99
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.24 E-value=5.4e-06 Score=65.57 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=68.3
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeC-CeeEEEEE
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKPMKIEV 173 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~-g~~i~V~~ 173 (206)
..+...+|+.|||..++.+.|..+|.+|.....|+++.. -.+.|||+|.+...|..|...|++..|- ...|.|.+
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 456789999999999999999999999999999998876 3469999999999999999999998886 78888877
Q ss_pred ec
Q 028651 174 VG 175 (206)
Q Consensus 174 a~ 175 (206)
++
T Consensus 219 a~ 220 (221)
T KOG4206|consen 219 AK 220 (221)
T ss_pred cC
Confidence 64
No 100
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.21 E-value=2.3e-06 Score=67.65 Aligned_cols=68 Identities=24% Similarity=0.383 Sum_probs=56.0
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCcee
Q 028651 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL 164 (206)
Q Consensus 94 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i 164 (206)
......||||-||.++++|++|+.+|+.|.....++|.. +.|. ..||++|++.+.|..|+..|+|..|
T Consensus 206 ~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~~g~--~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 206 GARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-RGGM--PVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred cchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-CCCc--ceEeecHHHHHHHHHHHHHhhccee
Confidence 344557999999999999999999999997766666543 3444 3899999999999999999998765
No 101
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.99 E-value=1.7e-05 Score=66.23 Aligned_cols=79 Identities=22% Similarity=0.436 Sum_probs=63.0
Q ss_pred CCEEEEeCCCCCCcHHHH------HHHHhccCCeEEEEEEECC-CCC-Cce--EEEEEEccHHHHHHHHHHhCCceeCCe
Q 028651 98 GTKLYVSNLHPGVTNDDI------RELFSEIGELKRYAIHFDK-NGR-PSG--SAEVVYARRSDAFAALKRYNNVLLDGK 167 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L------~~~F~~~G~v~~v~i~~~~-~g~-~~G--~afV~f~~~~~A~~Ai~~l~g~~i~g~ 167 (206)
..-+||-+|++.+..+++ .++|.+||.|..|.|.... .-. ..+ -.||+|.+.++|..||...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 456899999998877663 5889999999998876653 111 112 239999999999999999999999999
Q ss_pred eEEEEEecC
Q 028651 168 PMKIEVVGT 176 (206)
Q Consensus 168 ~i~V~~a~~ 176 (206)
.|+..|-..
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999888653
No 102
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.97 E-value=6.6e-06 Score=68.93 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=64.0
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccC--CeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEE
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIG--ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 171 (206)
.++||+||-|.+|++||.+.+...| .+.++++..++ +|.++|||+|...+....++.++.|...+|.|+.-.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 4799999999999999999887766 56677888888 8999999999999999999999999999999985444
No 103
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.94 E-value=7.6e-06 Score=68.22 Aligned_cols=82 Identities=23% Similarity=0.405 Sum_probs=73.7
Q ss_pred CCCEEE-EeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 97 VGTKLY-VSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 97 ~~~~l~-V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
...++| |.+|++.+++++|+.+|..+|.|..+++..++ ++..+||+||.|.+...+..++.. +...+.+..+.+...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 345566 99999999999999999999999999999888 899999999999999999999887 788999999999998
Q ss_pred cCCCC
Q 028651 175 GTNAE 179 (206)
Q Consensus 175 ~~~~~ 179 (206)
.+...
T Consensus 262 ~~~~~ 266 (285)
T KOG4210|consen 262 EPRPK 266 (285)
T ss_pred CCCcc
Confidence 87553
No 104
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.89 E-value=3.9e-05 Score=65.53 Aligned_cols=79 Identities=23% Similarity=0.318 Sum_probs=66.4
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCe-eEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK-PMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~-~i~V~~a 174 (206)
+++.+|++.|||.+++|++|+++|..-|..........+ .+-+|++.+.+.|+|..|+-.+|++.+... .|+|.++
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~k---d~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK---DRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC---CcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 567799999999999999999999988877665554433 344999999999999999999999998765 8999998
Q ss_pred cCC
Q 028651 175 GTN 177 (206)
Q Consensus 175 ~~~ 177 (206)
+..
T Consensus 489 ks~ 491 (492)
T KOG1190|consen 489 KST 491 (492)
T ss_pred ccc
Confidence 753
No 105
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=0.00011 Score=65.10 Aligned_cols=80 Identities=21% Similarity=0.234 Sum_probs=65.2
Q ss_pred CCCCEEEEeCCCCCCcH------HHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCC-ee
Q 028651 96 EVGTKLYVSNLHPGVTN------DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG-KP 168 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te------~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g-~~ 168 (206)
.-.+.|+|.|+|---.. .-|..+|+++|++..+.++.++.|..+||.|++|.+..+|+.|++.|||..|+- +.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 44578999999864322 235678999999999999999877799999999999999999999999998864 56
Q ss_pred EEEEEec
Q 028651 169 MKIEVVG 175 (206)
Q Consensus 169 i~V~~a~ 175 (206)
+.|..-+
T Consensus 136 f~v~~f~ 142 (698)
T KOG2314|consen 136 FFVRLFK 142 (698)
T ss_pred EEeehhh
Confidence 7776544
No 106
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.83 E-value=2.8e-05 Score=65.92 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=67.9
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCC-eEE--EEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGE-LKR--YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~-v~~--v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
..+|.+.+||+..+.++|.+||..|.. |.. |+++.+..|+..|-|||+|.+.+.|..|....++.....+-|.|.-+
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 568999999999999999999998863 444 88999999999999999999999999999888887777888888655
Q ss_pred c
Q 028651 175 G 175 (206)
Q Consensus 175 ~ 175 (206)
.
T Consensus 360 S 360 (508)
T KOG1365|consen 360 S 360 (508)
T ss_pred c
Confidence 4
No 107
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.81 E-value=7e-05 Score=46.48 Aligned_cols=52 Identities=27% Similarity=0.358 Sum_probs=41.8
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHH
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAAL 156 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai 156 (206)
+.|-|.+.+++..+ ++..+|..||+|..+.+... .-+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 57888999877664 45568889999999887622 339999999999999985
No 108
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.81 E-value=0.00015 Score=60.75 Aligned_cols=80 Identities=13% Similarity=0.302 Sum_probs=63.1
Q ss_pred CCCCEEEEeCCC----CCCcH-------HHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCcee
Q 028651 96 EVGTKLYVSNLH----PGVTN-------DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL 164 (206)
Q Consensus 96 ~~~~~l~V~nLp----~~~te-------~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i 164 (206)
...++|.|.||- +..+. ++|.+-..+||.|..|.|.-. .+.|.+-|.|.+.++|..||+.|+|..|
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 356899999982 22332 345556789999999977533 3678999999999999999999999999
Q ss_pred CCeeEEEEEecCCC
Q 028651 165 DGKPMKIEVVGTNA 178 (206)
Q Consensus 165 ~g~~i~V~~a~~~~ 178 (206)
+|+.|..++.....
T Consensus 340 dgRql~A~i~DG~t 353 (382)
T KOG1548|consen 340 DGRQLTASIWDGKT 353 (382)
T ss_pred cceEEEEEEeCCcc
Confidence 99999998866443
No 109
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.66 E-value=2.5e-05 Score=72.01 Aligned_cols=83 Identities=17% Similarity=0.225 Sum_probs=75.3
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 177 (206)
...|+|.|.|+..|.++|+.++..+|.+.++.++..+.|+++|.|||.|.+..++..++...+...+..+.+.|.++.+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 45799999999999999999999999999999999999999999999999999999999998888888888999887664
Q ss_pred CCC
Q 028651 178 AEI 180 (206)
Q Consensus 178 ~~~ 180 (206)
.+.
T Consensus 816 ~~K 818 (881)
T KOG0128|consen 816 RDK 818 (881)
T ss_pred ccc
Confidence 433
No 110
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.66 E-value=0.00013 Score=64.69 Aligned_cols=61 Identities=13% Similarity=0.167 Sum_probs=51.9
Q ss_pred HHHHhccCCeEEEEEEEC-CC---CCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 116 RELFSEIGELKRYAIHFD-KN---GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 116 ~~~F~~~G~v~~v~i~~~-~~---g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
+.-+.+||.|..|.+..+ .+ .-..|..||+|.+.++|+.|.+.|+|.+|.++.+...|...
T Consensus 427 r~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 427 RTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 344668999999999887 33 33568899999999999999999999999999999988764
No 111
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.66 E-value=0.00041 Score=48.80 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=51.7
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEE-E-------EECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCe-e
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYA-I-------HFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK-P 168 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~-i-------~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~-~ 168 (206)
.+.|.|-+.|+. ....|.++|++||.|.+.. + ...+......+..|+|+++.+|++|+.. ||..|.|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 577899999988 4567888999999998764 0 0001011234899999999999999988 99999886 4
Q ss_pred EEEEEec
Q 028651 169 MKIEVVG 175 (206)
Q Consensus 169 i~V~~a~ 175 (206)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5566664
No 112
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.59 E-value=7.6e-05 Score=60.19 Aligned_cols=71 Identities=24% Similarity=0.322 Sum_probs=60.4
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-C--------CCCce----EEEEEEccHHHHHHHHHHhCCcee
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-N--------GRPSG----SAEVVYARRSDAFAALKRYNNVLL 164 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~--------g~~~G----~afV~f~~~~~A~~Ai~~l~g~~i 164 (206)
.-.||+++||+.+...-|+++|+.||.|-.|.+-... + |.... -+.|+|.+...|..+...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4579999999999999999999999999999887665 3 22322 346899999999999999999999
Q ss_pred CCee
Q 028651 165 DGKP 168 (206)
Q Consensus 165 ~g~~ 168 (206)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9874
No 113
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.58 E-value=3.3e-05 Score=62.29 Aligned_cols=63 Identities=24% Similarity=0.372 Sum_probs=53.6
Q ss_pred HHHHHHHh-ccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 113 DDIRELFS-EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 113 ~~L~~~F~-~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
++|...|+ +||+|+.+.|..+..-...|-+||.|...++|++|++.||+..+.|++|..++..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444455 8999999987776655678899999999999999999999999999999998875
No 114
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.52 E-value=7.4e-05 Score=64.21 Aligned_cols=67 Identities=19% Similarity=0.221 Sum_probs=57.0
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEEC---C-C--CC--------CceEEEEEEccHHHHHHHHHHhCCc
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD---K-N--GR--------PSGSAEVVYARRSDAFAALKRYNNV 162 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~---~-~--g~--------~~G~afV~f~~~~~A~~Ai~~l~g~ 162 (206)
++++|.+.|||.+-.-+.|.++|..+|.|+.|+|+.. + + +. .+-+|+|+|+..+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6789999999999888999999999999999999877 3 1 21 2458999999999999999988654
Q ss_pred e
Q 028651 163 L 163 (206)
Q Consensus 163 ~ 163 (206)
.
T Consensus 310 ~ 310 (484)
T KOG1855|consen 310 Q 310 (484)
T ss_pred h
Confidence 3
No 115
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00051 Score=60.44 Aligned_cols=68 Identities=16% Similarity=0.278 Sum_probs=62.3
Q ss_pred CCCCCCCCCEEEEeCCCCCCcHHHHHHHHh-ccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHH
Q 028651 91 GISGIEVGTKLYVSNLHPGVTNDDIRELFS-EIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKR 158 (206)
Q Consensus 91 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~ 158 (206)
....+++..||||++||--++.++|..+|. .||.|..+-|..|+ -+.++|-+=|+|.+...-.+||.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 456678899999999999999999999998 89999999999995 788999999999999999999976
No 116
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.41 E-value=0.00013 Score=61.91 Aligned_cols=72 Identities=24% Similarity=0.349 Sum_probs=56.7
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhc---c-CCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEE
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSE---I-GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~---~-G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 171 (206)
..|.+.+||+++++.++.+||.. . +..+.|-++...+|+.+|-|||.|..+++|+.|+.. |...|+-+-|.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 35667899999999999999952 2 345567677767899999999999999999999987 555555555544
No 117
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.39 E-value=0.0011 Score=49.47 Aligned_cols=74 Identities=20% Similarity=0.285 Sum_probs=51.7
Q ss_pred CCCEEEEeCCC-----C-CCcH---HHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCe
Q 028651 97 VGTKLYVSNLH-----P-GVTN---DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK 167 (206)
Q Consensus 97 ~~~~l~V~nLp-----~-~~te---~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~ 167 (206)
+..||.|.=+. . ...+ .+|.+.|..||.+.-+++..+ .-+|+|.+-+.|.+|+.. +|..+.|+
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals~-dg~~v~g~ 97 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALSL-DGIQVNGR 97 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHHG-CCSEETTE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHcc-CCcEECCE
Confidence 35666666444 1 2222 257788899999988887654 679999999999999975 99999999
Q ss_pred eEEEEEecCCC
Q 028651 168 PMKIEVVGTNA 178 (206)
Q Consensus 168 ~i~V~~a~~~~ 178 (206)
.|+|.+..++-
T Consensus 98 ~l~i~LKtpdW 108 (146)
T PF08952_consen 98 TLKIRLKTPDW 108 (146)
T ss_dssp EEEEEE-----
T ss_pred EEEEEeCCccH
Confidence 99999988654
No 118
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.32 E-value=0.0002 Score=62.32 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=60.7
Q ss_pred CCEEEEeCCCCCCc-HHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 98 GTKLYVSNLHPGVT-NDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 98 ~~~l~V~nLp~~~t-e~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
.+.|-+.-.|+..+ .++|..+|.+||.|..|.+-+.. -.|.|+|.+..+|-.|... ++..|+++.|+|.|.++
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~-----~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS-----LHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCch-----hhheeeeeccccccchhcc-ccceecCceeEEEEecC
Confidence 45555666666644 58899999999999999987652 3789999999999777754 89999999999999987
Q ss_pred CC
Q 028651 177 NA 178 (206)
Q Consensus 177 ~~ 178 (206)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 44
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.02 E-value=0.00047 Score=62.67 Aligned_cols=80 Identities=11% Similarity=0.075 Sum_probs=68.3
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEE-EEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKR-YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
..+..|||..||..+++.++.++|...-.|++ |.|-+.+++..++.|||.|..++++.+|...-+.+.++.+.|.|.-.
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 35789999999999999999999987767776 77777778999999999999998888888776777788888998665
Q ss_pred c
Q 028651 175 G 175 (206)
Q Consensus 175 ~ 175 (206)
.
T Consensus 512 ~ 512 (944)
T KOG4307|consen 512 A 512 (944)
T ss_pred h
Confidence 4
No 120
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.92 E-value=0.002 Score=55.08 Aligned_cols=74 Identities=16% Similarity=0.293 Sum_probs=58.3
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-C---CCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-N---GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~---g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
..|.|.||.++++.++++.+|...|.|..+.|+... + ....-.|||.|.+...+..|.. |.++.|-++.|.|-.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 489999999999999999999999999999887754 1 2345699999999988877764 566666666554433
No 121
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.91 E-value=0.0039 Score=51.47 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=52.4
Q ss_pred HHHHHHHhccCCeEEEEEEECCCC-C-CceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 113 DDIRELFSEIGELKRYAIHFDKNG-R-PSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 113 ~~L~~~F~~~G~v~~v~i~~~~~g-~-~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
+++++-..+||.|..|.|+..++. . -.--.||+|...++|.+|+-.|||..|+|+.+..++..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 456788899999999988887631 1 12357999999999999999999999999999988865
No 122
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.86 E-value=0.001 Score=59.55 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=64.2
Q ss_pred CCCCCCCEEEEeCCCCCCcHHHHHHHHh-ccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCcee---CCee
Q 028651 93 SGIEVGTKLYVSNLHPGVTNDDIRELFS-EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL---DGKP 168 (206)
Q Consensus 93 ~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i---~g~~ 168 (206)
..-..++.|||.||-.-.|.-.|++++. .+|.|....|.. .+-.|||.|.+.++|.+.+.+|||... +.+.
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk-----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK-----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH-----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3445678999999988889999999998 677777663322 345899999999999999999999764 5678
Q ss_pred EEEEEecCCC
Q 028651 169 MKIEVVGTNA 178 (206)
Q Consensus 169 i~V~~a~~~~ 178 (206)
|.|.|+....
T Consensus 514 L~adf~~~de 523 (718)
T KOG2416|consen 514 LIADFVRADE 523 (718)
T ss_pred eEeeecchhH
Confidence 8888876433
No 123
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.80 E-value=0.0017 Score=60.64 Aligned_cols=81 Identities=17% Similarity=0.268 Sum_probs=69.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCC--eeEEEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG--KPMKIEV 173 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g--~~i~V~~ 173 (206)
...+.++|++|..++....|...|..||.|..|.+-.. .-||||.|++...|+.|++.|-+..|++ +.|.|.|
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 35678999999999999999999999999998766442 2399999999999999999999999976 5799999
Q ss_pred ecCCCCCC
Q 028651 174 VGTNAEIP 181 (206)
Q Consensus 174 a~~~~~~~ 181 (206)
+.+....|
T Consensus 528 a~~~~~~P 535 (975)
T KOG0112|consen 528 ASPPGATP 535 (975)
T ss_pred ccCCCCCh
Confidence 98755433
No 124
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.77 E-value=0.0013 Score=56.67 Aligned_cols=74 Identities=28% Similarity=0.321 Sum_probs=58.4
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccC-CeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCC-ceeCCeeEEEEEecC
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN-VLLDGKPMKIEVVGT 176 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g-~~i~g~~i~V~~a~~ 176 (206)
.++|++||.+.++..+|..+|...- ....-.++ ..||+||.+.+...|.+|++.|++ ..+.|+.+.|..+-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999996541 11111122 347999999999999999999999 568999999988765
Q ss_pred CC
Q 028651 177 NA 178 (206)
Q Consensus 177 ~~ 178 (206)
+.
T Consensus 76 kk 77 (584)
T KOG2193|consen 76 KK 77 (584)
T ss_pred HH
Confidence 43
No 125
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.69 E-value=0.0061 Score=53.84 Aligned_cols=62 Identities=19% Similarity=0.290 Sum_probs=45.5
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC----CCCCce---EEEEEEccHHHHHHHHHH
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK----NGRPSG---SAEVVYARRSDAFAALKR 158 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~----~g~~~G---~afV~f~~~~~A~~Ai~~ 158 (206)
.-+++|||++||++++|+.|...|..||.+. |...... .-.++| |+|+.|+++.....-+.+
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 3467999999999999999999999999653 2222111 123556 999999988777665544
No 126
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.64 E-value=8.2e-05 Score=68.68 Aligned_cols=68 Identities=29% Similarity=0.404 Sum_probs=59.2
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~ 165 (206)
..++||+||++.+.+.+|...|..++.+..+.+.... +++.+|+|||+|..++.+.+||...+...+.
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 4689999999999999999999999988888776444 7889999999999999999999886666555
No 127
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.61 E-value=0.0027 Score=51.42 Aligned_cols=75 Identities=29% Similarity=0.543 Sum_probs=62.5
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCc----eeCCeeEEEEE
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNV----LLDGKPMKIEV 173 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~----~i~g~~i~V~~ 173 (206)
..|||.||...++.+.|.+.|+.||+|....++.|-.++..+-++|.|...-.|.+|+....-. ...+.+.-|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 6799999999999999999999999999988888888889999999999999999998876432 33445544443
No 128
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.61 E-value=0.011 Score=39.88 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=41.6
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN 161 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g 161 (206)
....+|+ .|..+...||.++|+.||.|. |..+.+ -.|||...+.+.|..|+..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT------TEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC------CcEEEEeecHHHHHHHHHHhcc
Confidence 4566676 999999999999999999864 444433 2899999999999999988763
No 129
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.61 E-value=0.017 Score=36.89 Aligned_cols=55 Identities=25% Similarity=0.284 Sum_probs=44.4
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhcc---CCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHh
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEI---GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY 159 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~---G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l 159 (206)
..+|+|.++.. ++.++|+.+|..| .....|..+.|. .|-|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 46899999854 7788999999888 235678887774 5889999999999999764
No 130
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.56 E-value=0.0069 Score=47.04 Aligned_cols=80 Identities=18% Similarity=0.276 Sum_probs=51.6
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhc-cCCe---EEEEEEECC--C-CCCceEEEEEEccHHHHHHHHHHhCCceeCCe--
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSE-IGEL---KRYAIHFDK--N-GRPSGSAEVVYARRSDAFAALKRYNNVLLDGK-- 167 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~v---~~v~i~~~~--~-g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~-- 167 (206)
...+|.|.+||+++|++++++.++. ++.- ..+.-.... . -....-|||.|.+.+++..-+..++|+.|.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4579999999999999999886665 5544 344322332 1 22345799999999999999999999876332
Q ss_pred ---eEEEEEecC
Q 028651 168 ---PMKIEVVGT 176 (206)
Q Consensus 168 ---~i~V~~a~~ 176 (206)
...|++|.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 456777765
No 131
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.46 E-value=0.019 Score=42.71 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=53.3
Q ss_pred CCCCEEEEeCCCCCCc----HHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEE
Q 028651 96 EVGTKLYVSNLHPGVT----NDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 171 (206)
++-.||.|.=|..++. -..+...++.||+|.+|.+. .+-.|.|.|.+...|-+|+.+|+. ...|..+..
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec------CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 3567888875555443 23455667899999999875 234899999999999999999876 556667776
Q ss_pred EEe
Q 028651 172 EVV 174 (206)
Q Consensus 172 ~~a 174 (206)
.|-
T Consensus 157 sWq 159 (166)
T PF15023_consen 157 SWQ 159 (166)
T ss_pred ecc
Confidence 664
No 132
>PF07078 FYTT: Forty-two-three protein; InterPro: IPR009782 This family consists of several hypothetical mammalian proteins of around 320 residues in length. The function of this family is unknown although several of the family members are annotated as putative 40-2-3 proteins.
Probab=96.21 E-value=0.0019 Score=53.27 Aligned_cols=18 Identities=61% Similarity=0.798 Sum_probs=14.2
Q ss_pred CCCCCCCHHHHHhhcCCC
Q 028651 2 ATHVDMSLDDIIKSRKKS 19 (206)
Q Consensus 2 ~~~~~~sld~ii~~~~~~ 19 (206)
.|||||||||||+=.+|.
T Consensus 26 ~DKIDMSLDDIIKLNKKE 43 (316)
T PF07078_consen 26 LDKIDMSLDDIIKLNKKE 43 (316)
T ss_pred cccccccHHHHHHhhhhh
Confidence 489999999999844443
No 133
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.14 E-value=0.0016 Score=54.59 Aligned_cols=80 Identities=19% Similarity=0.336 Sum_probs=62.5
Q ss_pred CEEEEeCCCCCCcHHHH---HHHHhccCCeEEEEEEECCC--C--CCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEE
Q 028651 99 TKLYVSNLHPGVTNDDI---RELFSEIGELKRYAIHFDKN--G--RPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L---~~~F~~~G~v~~v~i~~~~~--g--~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 171 (206)
.-+||-+|+..+..+++ .+.|.+||.|..|.+..+.+ . ....-++|+|...++|..||...+|..++++.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 46788899888766654 36688999999998877651 1 12234799999999999999999999999999888
Q ss_pred EEecCCC
Q 028651 172 EVVGTNA 178 (206)
Q Consensus 172 ~~a~~~~ 178 (206)
.+...+-
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 7776543
No 134
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.68 E-value=0.0035 Score=58.60 Aligned_cols=82 Identities=20% Similarity=0.205 Sum_probs=68.2
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 94 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
+...+.+||++||+..+++.+|+..|..+|.|..|.|-...-+.-.-|+||.|.+.+.+-.|+..+.+..|....+.+.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 33457899999999999999999999999999999887765333445999999999999999999988888766666666
Q ss_pred ec
Q 028651 174 VG 175 (206)
Q Consensus 174 a~ 175 (206)
..
T Consensus 448 G~ 449 (975)
T KOG0112|consen 448 GQ 449 (975)
T ss_pred cc
Confidence 54
No 135
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.56 E-value=0.026 Score=50.47 Aligned_cols=71 Identities=13% Similarity=0.226 Sum_probs=55.4
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHh--ccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCC--ceeCCeeEEEEE
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFS--EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN--VLLDGKPMKIEV 173 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~--~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g--~~i~g~~i~V~~ 173 (206)
-|.|.+.-||.++-+++++.+|. .|-.+.+|.+-.+. -=||+|++..||+.|.+.|.. .+|.|+.|...+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 35677899999999999999996 47777777765442 348999999999999988765 457787766554
Q ss_pred e
Q 028651 174 V 174 (206)
Q Consensus 174 a 174 (206)
.
T Consensus 249 K 249 (684)
T KOG2591|consen 249 K 249 (684)
T ss_pred h
Confidence 3
No 136
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.48 E-value=0.043 Score=42.92 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=45.4
Q ss_pred cHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhC--CceeCCeeEEEEEecC
Q 028651 111 TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN--NVLLDGKPMKIEVVGT 176 (206)
Q Consensus 111 te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~--g~~i~g~~i~V~~a~~ 176 (206)
..+.|+++|..|+.+..+.... +.+-..|.|.+.++|.+|...|+ +..+.|..|+|.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~-----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK-----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET-----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcC-----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 3478999999999888776654 44578999999999999999999 9999999999999854
No 137
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.42 E-value=0.061 Score=35.49 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=37.1
Q ss_pred CCCCcHHHHHHHHhccCC-----eEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 107 HPGVTNDDIRELFSEIGE-----LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 107 p~~~te~~L~~~F~~~G~-----v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
-..++..+|..++...+. |-.|.|..+ |+||+-.. +.|+.+++.|++..+.|+.++|+.|
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 445788899999876644 456777554 89999875 4899999999999999999999875
No 138
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.26 E-value=0.33 Score=34.74 Aligned_cols=68 Identities=9% Similarity=0.022 Sum_probs=48.5
Q ss_pred CCEEEEeCCC-CCCcHHHHHHHHhcc-CCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCC
Q 028651 98 GTKLYVSNLH-PGVTNDDIRELFSEI-GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (206)
Q Consensus 98 ~~~l~V~nLp-~~~te~~L~~~F~~~-G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g 166 (206)
.+.|.|--.| +.++.++|..+.+.+ ..|..++|+.+... ++-.+.+.|.+.++|..-.+.+||..+..
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3445554444 445556666555555 35778899887642 45588999999999999999999988654
No 139
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.87 E-value=0.054 Score=48.39 Aligned_cols=81 Identities=16% Similarity=0.103 Sum_probs=55.1
Q ss_pred CCEEEEeCCCCCCcHHHHHHHH-hccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCce---eC-CeeEEE
Q 028651 98 GTKLYVSNLHPGVTNDDIRELF-SEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVL---LD-GKPMKI 171 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F-~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~---i~-g~~i~V 171 (206)
.+++.|.|+|...|-..|...- ...|.-..+.++.|= +....|||||.|.+++++..+.+++||.. |. .+...|
T Consensus 388 rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~i 467 (549)
T KOG4660|consen 388 RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASI 467 (549)
T ss_pred hhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeee
Confidence 3455555665554444433332 235556667777775 67789999999999999999999999975 44 345677
Q ss_pred EEecCCC
Q 028651 172 EVVGTNA 178 (206)
Q Consensus 172 ~~a~~~~ 178 (206)
.||.-+.
T Consensus 468 tYArIQG 474 (549)
T KOG4660|consen 468 TYARIQG 474 (549)
T ss_pred ehhhhhc
Confidence 7776443
No 140
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.85 E-value=0.02 Score=52.11 Aligned_cols=73 Identities=10% Similarity=0.141 Sum_probs=63.7
Q ss_pred CCCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEE
Q 028651 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (206)
Q Consensus 93 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 172 (206)
++.++..++||+|+-..+..+-++.++..||.|..+.... |+|.+|..+..+..|+..++-..+++..+.+.
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 3445678999999999999999999999999988876553 99999999999999999999999999887765
Q ss_pred E
Q 028651 173 V 173 (206)
Q Consensus 173 ~ 173 (206)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 5
No 141
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.66 E-value=0.083 Score=43.99 Aligned_cols=69 Identities=28% Similarity=0.434 Sum_probs=51.7
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCee-EEEEE
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP-MKIEV 173 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~-i~V~~ 173 (206)
..-|-|-+.|+.-. ..|..+|++||.|.+.... .+|. +-+|-|.+..+|++||.. ||..|+|.. |-|.-
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ngN---wMhirYssr~~A~KALsk-ng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNGN---WMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC--CCCc---eEEEEecchhHHHHhhhh-cCeeeccceEEeeee
Confidence 45566777776533 4577889999999876544 3333 899999999999999988 999998874 44544
No 142
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=93.91 E-value=0.047 Score=45.67 Aligned_cols=82 Identities=20% Similarity=0.237 Sum_probs=66.7
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
..+++|++++.+.+.+.++..++..+|.+..+.+.... ...+++++++.|...+.+..|+.......+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46899999999999999889999999988777766655 67789999999999999999998755557777776666655
Q ss_pred CCC
Q 028651 176 TNA 178 (206)
Q Consensus 176 ~~~ 178 (206)
...
T Consensus 167 ~~~ 169 (285)
T KOG4210|consen 167 RRG 169 (285)
T ss_pred ccc
Confidence 443
No 143
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.98 E-value=0.47 Score=42.92 Aligned_cols=84 Identities=18% Similarity=0.188 Sum_probs=64.4
Q ss_pred CCCCCEEEEeCCCCC-CcHHHHHHHHhcc----CCeEEEEEEECCCCC--------------------------------
Q 028651 95 IEVGTKLYVSNLHPG-VTNDDIRELFSEI----GELKRYAIHFDKNGR-------------------------------- 137 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~v~~v~i~~~~~g~-------------------------------- 137 (206)
...+..|-|-||.|+ +...+|.-+|+.| |.|.+|.|+...-|+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345678999999997 6778999999876 588888876654221
Q ss_pred ----------------CceEEEEEEccHHHHHHHHHHhCCceeCC--eeEEEEEecCCC
Q 028651 138 ----------------PSGSAEVVYARRSDAFAALKRYNNVLLDG--KPMKIEVVGTNA 178 (206)
Q Consensus 138 ----------------~~G~afV~f~~~~~A~~Ai~~l~g~~i~g--~~i~V~~a~~~~ 178 (206)
-.-||.|+|.+.+.|.+..+..+|+.|.. ..|-+.|.....
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDdm 309 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDDM 309 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCCC
Confidence 12389999999999999999999999865 456666665543
No 144
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.86 E-value=0.7 Score=29.88 Aligned_cols=55 Identities=20% Similarity=0.321 Sum_probs=42.7
Q ss_pred CCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEE
Q 028651 109 GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (206)
Q Consensus 109 ~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 171 (206)
.++-++++..+..|. ...| ..+++ | -||.|.+..+|+++....++..+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I--~~d~t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRI--RDDRT----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceE--EecCC----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 457789999999994 4444 44443 2 379999999999999999999888777665
No 145
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.76 E-value=0.55 Score=41.29 Aligned_cols=69 Identities=13% Similarity=0.142 Sum_probs=58.0
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhcc-CCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCC
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEI-GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~-G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g 166 (206)
+++.|.|--+|..++-.||..|...+ -.|..++++++... ..-.++|.|.+.++|..-.+.|||..|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 37899999999999999999998754 46888999997532 23478999999999999999999988754
No 146
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.45 E-value=0.1 Score=48.98 Aligned_cols=74 Identities=22% Similarity=0.220 Sum_probs=60.4
Q ss_pred EEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCce--eCCeeEEEEEecCC
Q 028651 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVL--LDGKPMKIEVVGTN 177 (206)
Q Consensus 100 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~--i~g~~i~V~~a~~~ 177 (206)
+.++.|.+-..+-..|..+|+.||.|.+.....+-+ +|.|+|.+.+.|..|+++|+|.+ .-|-+.+|.+++.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N-----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN-----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc-----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 344455566677778899999999999988876543 89999999999999999999976 46788999998864
Q ss_pred C
Q 028651 178 A 178 (206)
Q Consensus 178 ~ 178 (206)
+
T Consensus 375 ~ 375 (1007)
T KOG4574|consen 375 P 375 (1007)
T ss_pred c
Confidence 4
No 147
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=86.40 E-value=0.034 Score=48.30 Aligned_cols=79 Identities=14% Similarity=0.289 Sum_probs=65.1
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
.++++-|.|+|+...|+-|..++..||.+..|......+ -.-..-|+|...+.+..||..|++..+....++|.|...
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 356799999999999999999999999999886643321 122445788999999999999999999999999999765
Q ss_pred C
Q 028651 177 N 177 (206)
Q Consensus 177 ~ 177 (206)
.
T Consensus 157 e 157 (584)
T KOG2193|consen 157 E 157 (584)
T ss_pred h
Confidence 3
No 148
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=82.24 E-value=1 Score=35.00 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=53.8
Q ss_pred CCEEEEeCCCCCCcHH-----HHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCe-eEEE
Q 028651 98 GTKLYVSNLHPGVTND-----DIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK-PMKI 171 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~-----~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~-~i~V 171 (206)
.+++.+.+++..+..+ ....+|..|.+.....+.. +.+..-|.|.+++.|..|...++...|.|+ .++.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4567888887765432 2355666665555544443 455777899999999999999999999988 7777
Q ss_pred EEecCC
Q 028651 172 EVVGTN 177 (206)
Q Consensus 172 ~~a~~~ 177 (206)
-++.+.
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 776653
No 149
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=80.77 E-value=14 Score=30.90 Aligned_cols=48 Identities=15% Similarity=0.238 Sum_probs=34.8
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccH
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARR 149 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~ 149 (206)
.+-|||+||+.++.-.||+..+.+.+.+- ..|.+. -+.|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswk---g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWK---GHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc-eeEeee---cCCcceeEecCCc
Confidence 45699999999999999999998775432 222221 2567899999654
No 150
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=77.65 E-value=2.8 Score=36.24 Aligned_cols=67 Identities=15% Similarity=0.219 Sum_probs=48.4
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCC-eEEEEEEECC---CCCCceEEEEEEccHHHHHHHHHHhCCcee
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGE-LKRYAIHFDK---NGRPSGSAEVVYARRSDAFAALKRYNNVLL 164 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~-v~~v~i~~~~---~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i 164 (206)
.+.|.|.+||+..++.+|.+....+-. |....+.... .-...+.|||.|...++...-...|+|+.+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 478999999999999998888776532 3333333211 112346889999999998888889999775
No 151
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=76.95 E-value=8.7 Score=27.64 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=30.2
Q ss_pred EEEEeCCCCC---------CcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEcc-HHHHHHHHH
Q 028651 100 KLYVSNLHPG---------VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR-RSDAFAALK 157 (206)
Q Consensus 100 ~l~V~nLp~~---------~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~-~~~A~~Ai~ 157 (206)
++.|-|++.. .+.++|.+.|+.|.+++ ++.++++. -+.|+++|+|.+ ..-...|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCChHHHHHHHH
Confidence 4566677543 35578999999997764 55666654 357899999974 444455543
No 152
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=75.40 E-value=9.5 Score=31.94 Aligned_cols=79 Identities=13% Similarity=0.226 Sum_probs=59.0
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC--------CCCCceEEEEEEccHHHHHHH----HHHhCC--c
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK--------NGRPSGSAEVVYARRSDAFAA----LKRYNN--V 162 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~--------~g~~~G~afV~f~~~~~A~~A----i~~l~g--~ 162 (206)
..+.|.+.|+..+++--.+...|.+||+|++|.++.+. ..+......+.|-+.+.|..- ++.|.. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999888888889999999999998876 223456778899888777543 333333 3
Q ss_pred eeCCeeEEEEEec
Q 028651 163 LLDGKPMKIEVVG 175 (206)
Q Consensus 163 ~i~g~~i~V~~a~ 175 (206)
.+....|+|.+..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 4677777777765
No 153
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=74.39 E-value=0.41 Score=43.11 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=57.1
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeE
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i 169 (206)
..++|||.|++++++-++|..++..+.-+..+.+.... ......+..|+|.--.+...|+.+||+..+....+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 45789999999999999999999988766666554443 33455678899988888888999999887765543
No 154
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=71.30 E-value=0.55 Score=40.59 Aligned_cols=74 Identities=14% Similarity=0.117 Sum_probs=54.1
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
.+++|.+|+..+...++.++|..+|.|.+.++-... ..-+|-|+|........|+.. +|..+.-+...+...++
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~---~s~~c~~sf~~qts~~halr~-~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASKS---RSSSCSHSFRKQTSSKHALRS-HGRERKRQHSRRAIIKP 225 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC---CCcchhhhHhhhhhHHHHHHh-cchhhhhhhhhhhhcCc
Confidence 689999999999999999999999999887654432 233677899887777777765 67766644444433333
No 155
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=69.30 E-value=11 Score=24.38 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=43.0
Q ss_pred HHHHHHHhccC-CeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 113 DDIRELFSEIG-ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 113 ~~L~~~F~~~G-~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
++|.+-|...| +|..+.-+..+ +....-.-||+++...+.. +.|+=..+.+..|+|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecCCC
Confidence 46777777666 67787777776 6667778899987655533 34555778889999887553
No 156
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=67.71 E-value=6.2 Score=33.21 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=27.9
Q ss_pred EEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecCCCC
Q 028651 142 AEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAE 179 (206)
Q Consensus 142 afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~~ 179 (206)
|||+|++..+|+.|++.+.... ...+.|+.|.++.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc
Confidence 7999999999999999754433 35668888877664
No 157
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=67.40 E-value=9 Score=24.91 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=41.1
Q ss_pred HHHHHHHhccC-CeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 113 DDIRELFSEIG-ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 113 ~~L~~~F~~~G-~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
++|.+-|...| ++..+..+..+ ++...-+-||+.....+-.. .|+=..|+++.+.|+-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46777888877 67888887777 45666778888875433222 455567888888887543
No 158
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=65.28 E-value=1.2 Score=35.67 Aligned_cols=67 Identities=30% Similarity=0.372 Sum_probs=55.3
Q ss_pred CCEEEEeC----CCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCcee
Q 028651 98 GTKLYVSN----LHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL 164 (206)
Q Consensus 98 ~~~l~V~n----Lp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i 164 (206)
..+++.++ |...++++.+.+.|+..+++..+++..+.+++..-+.|+++......-.++..+++..+
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 35667777 77888999999999999999999998888888888999999877777777777666543
No 159
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=64.05 E-value=21 Score=22.70 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=17.5
Q ss_pred HHHHHHHhccCCeEEEEEEECC
Q 028651 113 DDIRELFSEIGELKRYAIHFDK 134 (206)
Q Consensus 113 ~~L~~~F~~~G~v~~v~i~~~~ 134 (206)
++|+++|+..|+|.-+.+..-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~e 30 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYE 30 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccc
Confidence 5799999999999877665443
No 160
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=62.84 E-value=30 Score=30.54 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=58.9
Q ss_pred CCCCCEEEEeCCCCC-CcHHHHHHHHhcc----CCeEEEEEEECCCCC--------------------------------
Q 028651 95 IEVGTKLYVSNLHPG-VTNDDIRELFSEI----GELKRYAIHFDKNGR-------------------------------- 137 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~v~~v~i~~~~~g~-------------------------------- 137 (206)
..+...|-|-||.|+ +...+|..+|+.| |.+..|.|....-|+
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 345678999999987 6778898888765 567777665432111
Q ss_pred ---------------C-------------------ceEEEEEEccHHHHHHHHHHhCCceeCC--eeEEEEEecC
Q 028651 138 ---------------P-------------------SGSAEVVYARRSDAFAALKRYNNVLLDG--KPMKIEVVGT 176 (206)
Q Consensus 138 ---------------~-------------------~G~afV~f~~~~~A~~Ai~~l~g~~i~g--~~i~V~~a~~ 176 (206)
. .-||.|+|.+.+.+.......+|..+.. ..+.+.+...
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD 297 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPD 297 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecCC
Confidence 0 2288999999999999999999988754 4555666554
No 161
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.32 E-value=18 Score=31.75 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=43.7
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCe-EEEEEEECCCCCCceEEEEEEccHHHHHHHHHH
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGEL-KRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v-~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~ 158 (206)
.+.|-|.++|.....+||...|+.|+.- -.|.++-+. .||-.|.+...|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhhc
Confidence 3678999999999999999999999643 335544432 789999999999998865
No 162
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.06 E-value=1.1 Score=39.43 Aligned_cols=79 Identities=4% Similarity=-0.161 Sum_probs=60.7
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 177 (206)
+..|+..+|..+++.++.-+|..||.|..+.+.... .+-..-.+||+... .++..+|..+.-..+.+..++|.++...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 456777889999999999999999999888776555 44455677887654 5778888777777788888888887754
Q ss_pred C
Q 028651 178 A 178 (206)
Q Consensus 178 ~ 178 (206)
.
T Consensus 83 ~ 83 (572)
T KOG4365|consen 83 S 83 (572)
T ss_pred h
Confidence 3
No 163
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=61.45 E-value=44 Score=31.26 Aligned_cols=70 Identities=13% Similarity=0.256 Sum_probs=51.4
Q ss_pred CEEEEe-CCCCCCcHHHHHHHHhccCCe-----EEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEE
Q 028651 99 TKLYVS-NLHPGVTNDDIRELFSEIGEL-----KRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (206)
Q Consensus 99 ~~l~V~-nLp~~~te~~L~~~F~~~G~v-----~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 172 (206)
.++||. +=...++..+|..++..-+.| -.|.|..+ |.||+... +.|...++.|++..+.|+.|.|+
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~-------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 558 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS-------HSTIELPK-GMPGEVLQHFTRTRILNKPMNMQ 558 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC-------ceEEEcCh-hhHHHHHHHhccccccCCceEEE
Confidence 345553 234568888888888765544 34666543 88999874 57889999999999999999999
Q ss_pred EecC
Q 028651 173 VVGT 176 (206)
Q Consensus 173 ~a~~ 176 (206)
.+..
T Consensus 559 ~~~~ 562 (629)
T PRK11634 559 LLGD 562 (629)
T ss_pred ECCC
Confidence 8753
No 164
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=59.91 E-value=14 Score=28.87 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=41.6
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCC--CCceEEEEEEccHHHHHHHHHHhCCceeCCeeEE
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNG--RPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g--~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~ 170 (206)
.++|.. +.+..-++|.++-+ |.+..|.+.....+ ..+|-.||+|.+.+.|.+.++. +........|.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~ 180 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELK 180 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHH
Confidence 456655 22223334444433 78888877665544 6789999999999999987766 33333333333
No 165
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=57.19 E-value=14 Score=28.88 Aligned_cols=63 Identities=25% Similarity=0.390 Sum_probs=42.4
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCC-CCceEEEEEEccHHHHHHHH
Q 028651 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNG-RPSGSAEVVYARRSDAFAAL 156 (206)
Q Consensus 94 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g-~~~G~afV~f~~~~~A~~Ai 156 (206)
.......+++.+++..++..++..+|..++.+....+...... ....+.++.+.....+..+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 3346788999999999999999999999999977666655522 23333344444333333333
No 166
>PTZ00146 fibrillarin; Provisional
Probab=55.03 E-value=23 Score=29.88 Aligned_cols=17 Identities=12% Similarity=-0.150 Sum_probs=9.2
Q ss_pred eEEEEEEccHHHHHHHH
Q 028651 140 GSAEVVYARRSDAFAAL 156 (206)
Q Consensus 140 G~afV~f~~~~~A~~Ai 156 (206)
-+.|+.+..++.+..++
T Consensus 204 DvV~~Dva~pdq~~il~ 220 (293)
T PTZ00146 204 DVIFADVAQPDQARIVA 220 (293)
T ss_pred CEEEEeCCCcchHHHHH
Confidence 45566665555554444
No 167
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=51.56 E-value=53 Score=19.94 Aligned_cols=54 Identities=11% Similarity=0.262 Sum_probs=41.3
Q ss_pred EEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccH----HHHHHHHHH
Q 028651 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARR----SDAFAALKR 158 (206)
Q Consensus 100 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~----~~A~~Ai~~ 158 (206)
++.|.||.-.--...+.+.+...-.|..+.+... .+.+-|+|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~-----~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE-----TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC-----CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5778888887778889999999888999988764 34788888643 566666665
No 168
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=50.68 E-value=14 Score=30.02 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=28.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY 128 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v 128 (206)
....++|+-|+|..+|++.|.++.+.+|-+..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 346789999999999999999999988865543
No 169
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=49.29 E-value=38 Score=23.16 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=19.7
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHH
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELF 119 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F 119 (206)
..++|.|+|||....+++|++.+
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeE
Confidence 46899999999999999998654
No 170
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=47.27 E-value=1.1e+02 Score=22.33 Aligned_cols=72 Identities=14% Similarity=0.119 Sum_probs=48.9
Q ss_pred CCCEEEEeCCCCC---CcHHHHHHHHhccC-CeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEE
Q 028651 97 VGTKLYVSNLHPG---VTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (206)
Q Consensus 97 ~~~~l~V~nLp~~---~te~~L~~~F~~~G-~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 172 (206)
....|.|+..... .+-..+++++..-| .++.+.... +...|.|.+.++..+|.+.|....-++..|.+.
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~-------~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAln 106 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEN-------DSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQ 106 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeC-------CEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 3456777766433 45567888887765 445554432 267899999999999998887666556666666
Q ss_pred Eec
Q 028651 173 VVG 175 (206)
Q Consensus 173 ~a~ 175 (206)
++.
T Consensus 107 l~p 109 (127)
T PRK10629 107 DDN 109 (127)
T ss_pred cCC
Confidence 655
No 171
>PRK11901 hypothetical protein; Reviewed
Probab=46.63 E-value=54 Score=27.99 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=38.4
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEE--EEccHHHHHHHHHHhCC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEV--VYARRSDAFAALKRYNN 161 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV--~f~~~~~A~~Ai~~l~g 161 (206)
..+|-|.. ...++.|..|...++ +..+.+.... +|+. .|..| .|.+.++|..|+..|..
T Consensus 245 ~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 245 HYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 34555544 355778888887774 4555555444 4443 34433 68999999999998864
No 172
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=46.05 E-value=38 Score=22.65 Aligned_cols=36 Identities=17% Similarity=0.078 Sum_probs=24.9
Q ss_pred CeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCce
Q 028651 124 ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVL 163 (206)
Q Consensus 124 ~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~ 163 (206)
.|.++....+ .+||-|||=.+.++...|++.+.+..
T Consensus 33 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDS----LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TT----STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCC----CceEEEEEeCCHHHHHHHHhccccee
Confidence 4555554433 78999999999999999998876654
No 173
>PF14893 PNMA: PNMA
Probab=45.23 E-value=24 Score=30.25 Aligned_cols=54 Identities=19% Similarity=0.301 Sum_probs=33.6
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhc-cCCeEEEEEEEC---CCCCCceEEEEEEccH
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSE-IGELKRYAIHFD---KNGRPSGSAEVVYARR 149 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~v~~v~i~~~---~~g~~~G~afV~f~~~ 149 (206)
.+.-+.|.|.+||.++++++|++.+.. .-++-..+|... +. ...--|+|+|...
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~-~~~~aalve~~e~ 72 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRRE-ENAKAALVEFAED 72 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhh-cccceeeeecccc
Confidence 345678999999999999999888753 323333332221 11 1223678888653
No 174
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=36.56 E-value=89 Score=21.23 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=30.6
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEc
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA 147 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~ 147 (206)
...-|||+|++..+-|.-...+....+. -++.+.+..+. ..||.|-++-
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~-G~a~m~~~~~n-eqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGD-GSAVMVWSDNN-EQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCC-ccEEEEEccCC-CCCEEEEEeC
Confidence 3466999999888876655555554433 33344443322 6789998773
No 175
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=35.03 E-value=1.4e+02 Score=26.99 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=35.5
Q ss_pred HHHHHHHHh----ccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhC
Q 028651 112 NDDIRELFS----EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (206)
Q Consensus 112 e~~L~~~F~----~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~ 160 (206)
.-+|..+|. .+|-|.++.+...+.-......++.|.+.++|..|+..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 446777775 5677888777666544455677889999999999987754
No 176
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=33.31 E-value=17 Score=31.80 Aligned_cols=59 Identities=17% Similarity=0.098 Sum_probs=44.3
Q ss_pred CEEEEeCCCCCCcH--------HHHHHHHhc--cCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHH
Q 028651 99 TKLYVSNLHPGVTN--------DDIRELFSE--IGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALK 157 (206)
Q Consensus 99 ~~l~V~nLp~~~te--------~~L~~~F~~--~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~ 157 (206)
+.+|+.+.....+. +++...|.. .+++..+.+..+. +..+.|..|++|...+.|+++..
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34555555444333 488999987 6677888877776 77788999999999999999874
No 177
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=30.76 E-value=1.5e+02 Score=18.95 Aligned_cols=55 Identities=16% Similarity=0.335 Sum_probs=40.6
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccH----HHHHHHHHH
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARR----SDAFAALKR 158 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~----~~A~~Ai~~ 158 (206)
.+++|.++.-.--...+...+.....|..+.+..+ .+.++|+|++. ++...|++.
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~-----~~~~~V~~d~~~~~~~~i~~ai~~ 62 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE-----KGTATVTFDSNKVDIEAIIEAIED 62 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc-----cCeEEEEEcCCcCCHHHHHHHHHH
Confidence 56788888777777888999988888999988775 34689999872 344445444
No 178
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=30.62 E-value=1.3e+02 Score=18.44 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=30.1
Q ss_pred HHHHHHHhccC-CeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCce
Q 028651 113 DDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVL 163 (206)
Q Consensus 113 ~~L~~~F~~~G-~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~ 163 (206)
.++-++|...| .|.++.+....+ +++.-+.+.+.+.|.++++. +|+.
T Consensus 16 a~v~~~l~~~~inI~~i~~~~~~~---~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 16 AAVTEILSEAGINIRALSIADTSE---FGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred HHHHHHHHHCCCCEEEEEEEecCC---CCEEEEEECCHHHHHHHHHH-CCCE
Confidence 56778887665 677776644322 35556667777777777766 4544
No 179
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=30.57 E-value=1e+02 Score=25.88 Aligned_cols=84 Identities=20% Similarity=0.292 Sum_probs=49.6
Q ss_pred CCCCCCEEEEeCCCCC------------CcHHHHHHHHhccCCeEEEEEEE-CC-----CCCCceEEE------------
Q 028651 94 GIEVGTKLYVSNLHPG------------VTNDDIRELFSEIGELKRYAIHF-DK-----NGRPSGSAE------------ 143 (206)
Q Consensus 94 ~~~~~~~l~V~nLp~~------------~te~~L~~~F~~~G~v~~v~i~~-~~-----~g~~~G~af------------ 143 (206)
+.....|||+.+||-. .++.-|...|..||.|..|.|+. |+ +|+..|.-|
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffe 224 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFE 224 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHH
Confidence 3345578888888753 35667899999999998887643 21 455433222
Q ss_pred --EEEccHHHHHHHHHHhCCcee----CCe----eEEEEEecCC
Q 028651 144 --VVYARRSDAFAALKRYNNVLL----DGK----PMKIEVVGTN 177 (206)
Q Consensus 144 --V~f~~~~~A~~Ai~~l~g~~i----~g~----~i~V~~a~~~ 177 (206)
|.|...-....|+..|.|..+ ++. .++|.+..+.
T Consensus 225 ayvqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 225 AYVQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 333333444556666766543 333 4556555543
No 180
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=30.49 E-value=63 Score=20.76 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=19.5
Q ss_pred EEEEEEccHHHHHHHHHHhCCcee
Q 028651 141 SAEVVYARRSDAFAALKRYNNVLL 164 (206)
Q Consensus 141 ~afV~f~~~~~A~~Ai~~l~g~~i 164 (206)
+.+|+|.+..+|.+|-+.|....+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 689999999999998887765544
No 181
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=29.94 E-value=1.9e+02 Score=21.65 Aligned_cols=35 Identities=11% Similarity=0.010 Sum_probs=26.7
Q ss_pred eEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCce
Q 028651 125 LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVL 163 (206)
Q Consensus 125 v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~ 163 (206)
|.+|.++.. ..||.||+....+++..++..+.+..
T Consensus 36 i~~i~vp~~----fpGYVfVe~~~~~~~~~~i~~v~~v~ 70 (153)
T PRK08559 36 IYAILAPPE----LKGYVLVEAESKGAVEEAIRGIPHVR 70 (153)
T ss_pred EEEEEccCC----CCcEEEEEEEChHHHHHHHhcCCCEe
Confidence 555555543 78999999998888889988877643
No 182
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=29.49 E-value=23 Score=29.19 Aligned_cols=81 Identities=14% Similarity=0.104 Sum_probs=57.8
Q ss_pred CCEEEEeCCCCCCcHHH-H--HHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 98 GTKLYVSNLHPGVTNDD-I--RELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~-L--~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
-..+++.++-.++..+- | ...|+.|-.+...+++.+.-+...+++|+.|.......++...-++.++.-..|++.-.
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 34567777766666654 3 67788887788888888887778899999998877777776665666676666665444
Q ss_pred cCCC
Q 028651 175 GTNA 178 (206)
Q Consensus 175 ~~~~ 178 (206)
...+
T Consensus 176 tswe 179 (290)
T KOG0226|consen 176 TSWE 179 (290)
T ss_pred cccC
Confidence 4433
No 183
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=29.47 E-value=66 Score=29.34 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=35.3
Q ss_pred ceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 028651 139 SGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (206)
Q Consensus 139 ~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 178 (206)
..|++++|++.+.+.+|+..++|....+..+.+.......
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~ 102 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEV 102 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccc
Confidence 3599999999999999999999999999888888877644
No 184
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=29.09 E-value=1.5e+02 Score=21.58 Aligned_cols=53 Identities=25% Similarity=0.300 Sum_probs=29.9
Q ss_pred EEEeCCCC---CCcHHHHHHHHhc-c---CCeEEEEEEECC--CCCCceEEEEEEccHHHHHH
Q 028651 101 LYVSNLHP---GVTNDDIRELFSE-I---GELKRYAIHFDK--NGRPSGSAEVVYARRSDAFA 154 (206)
Q Consensus 101 l~V~nLp~---~~te~~L~~~F~~-~---G~v~~v~i~~~~--~g~~~G~afV~f~~~~~A~~ 154 (206)
+.|--|++ +++.+||++-++. | -.+..+.=.... .|++.|||.| |++.+.|.+
T Consensus 23 mvvdvlHPG~a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 23 MVVDVLHPGKANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred eeEEEecCCCCCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 44444543 4677888776653 3 223333323333 6788899976 666665554
No 185
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=28.40 E-value=47 Score=18.70 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=10.3
Q ss_pred CCCcHHHHHHHHhccC
Q 028651 108 PGVTNDDIRELFSEIG 123 (206)
Q Consensus 108 ~~~te~~L~~~F~~~G 123 (206)
.++++++|++.|....
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4678999999998764
No 186
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=28.02 E-value=1.1e+02 Score=25.41 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=22.4
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCe
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGEL 125 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v 125 (206)
.....|+|||++++..-|..++...-.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 3567799999999999999998765344
No 187
>PRK10905 cell division protein DamX; Validated
Probab=27.13 E-value=1.8e+02 Score=24.95 Aligned_cols=58 Identities=24% Similarity=0.319 Sum_probs=35.1
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEEC-CCCCCceEE--EEEEccHHHHHHHHHHhCC
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSA--EVVYARRSDAFAALKRYNN 161 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~-~~g~~~G~a--fV~f~~~~~A~~Ai~~l~g 161 (206)
.+|-|.- ..+++.|.+|..+.+ +....+... ++|+. .|. +=.|.+.++|++|+..|..
T Consensus 248 YTLQL~A---~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 248 YTLQLSS---SSNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred eEEEEEe---cCCHHHHHHHHHHcC-CCceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCH
Confidence 3444443 455677888877775 332223322 25542 233 3378999999999998764
No 188
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.67 E-value=1.3e+02 Score=27.15 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=43.2
Q ss_pred EEeCCCCCCcH---HHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeE
Q 028651 102 YVSNLHPGVTN---DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169 (206)
Q Consensus 102 ~V~nLp~~~te---~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i 169 (206)
+|+||+.-... ..+..+-.+||+|-.+++-. .-.|...+.+.|+.|+.. |+..+.+++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~--------~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS--------VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC--------ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 57787654433 45566666899999877632 346777889999999988 7888888875
No 189
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=26.64 E-value=2e+02 Score=20.08 Aligned_cols=46 Identities=22% Similarity=0.305 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHHh-ccCCeEE-EEEEECC----CCCCceEEEEEEccHHHHHH
Q 028651 108 PGVTNDDIRELFS-EIGELKR-YAIHFDK----NGRPSGSAEVVYARRSDAFA 154 (206)
Q Consensus 108 ~~~te~~L~~~F~-~~G~v~~-v~i~~~~----~g~~~G~afV~f~~~~~A~~ 154 (206)
.+.+..+|++-+. .|+.-.. |.|..-+ .+.+.|||.| |++.+.|.+
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 3566778877764 4553222 2222222 3566777765 566655544
No 190
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=25.84 E-value=1.9e+02 Score=21.32 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=24.2
Q ss_pred CCcHHHHHHHHh-ccC--CeEEEEE--EECC--CCCCceEEEEEEccHHHHHH
Q 028651 109 GVTNDDIRELFS-EIG--ELKRYAI--HFDK--NGRPSGSAEVVYARRSDAFA 154 (206)
Q Consensus 109 ~~te~~L~~~F~-~~G--~v~~v~i--~~~~--~g~~~G~afV~f~~~~~A~~ 154 (206)
+.+..+|++-+. .|+ ....|.| +... .|.+.|||.| |++.+.|.+
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 567788887775 454 1222222 2222 3567777765 556555443
No 191
>PF12643 MazG-like: MazG-like family
Probab=23.61 E-value=24 Score=24.57 Aligned_cols=16 Identities=38% Similarity=0.754 Sum_probs=13.2
Q ss_pred CCCCCCCC---HHHHHhhc
Q 028651 1 MATHVDMS---LDDIIKSR 16 (206)
Q Consensus 1 m~~~~~~s---ld~ii~~~ 16 (206)
||++|+.+ ||++|.++
T Consensus 51 La~rLGid~~~lD~~i~~K 69 (98)
T PF12643_consen 51 LADRLGIDFRELDEIIKEK 69 (98)
T ss_pred HHHHhCCCHHHHHHHHHHH
Confidence 67889999 99999843
No 192
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=21.34 E-value=2e+02 Score=20.07 Aligned_cols=50 Identities=14% Similarity=0.186 Sum_probs=30.0
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEcc
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR 148 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~ 148 (206)
...-|||++++..+-+.-...+-+.++. -.+.+.+..+ ...||.|-++..
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~~-~eqG~~~~t~G~ 75 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWATN-TESGFEFQTFGE 75 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcCC-CCCCcEEEecCC
Confidence 3466999998887766544444444533 3344444333 234899988864
No 193
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=21.19 E-value=1.2e+02 Score=24.67 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.7
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHh
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFS 120 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~ 120 (206)
....++|+|||+.++..-|..++.
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHH
T ss_pred CCceEEEEEecccchHHHHHHHhh
Confidence 356789999999999999988886
No 194
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=21.14 E-value=2.3e+02 Score=17.82 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=29.8
Q ss_pred HHHHHHHHhccC-CeEEEEEEECCCCCCceEEEEEEcc---HHHHHHHHHHhCC
Q 028651 112 NDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYAR---RSDAFAALKRYNN 161 (206)
Q Consensus 112 e~~L~~~F~~~G-~v~~v~i~~~~~g~~~G~afV~f~~---~~~A~~Ai~~l~g 161 (206)
-.++.+.|+.+| .+.++.-...+.....-.-||++.. ....+.+++.|..
T Consensus 13 L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 13 LAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 456778888775 5666644443332334456788864 4556667766543
No 195
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=21.10 E-value=2.8e+02 Score=18.95 Aligned_cols=67 Identities=13% Similarity=0.353 Sum_probs=36.6
Q ss_pred EEEEeCCCCCCcHHHHHHH-------Hhcc-CCeEEEE------EEECCCCCCce-EEEEEEccHHHHHHHHHHhCCcee
Q 028651 100 KLYVSNLHPGVTNDDIREL-------FSEI-GELKRYA------IHFDKNGRPSG-SAEVVYARRSDAFAALKRYNNVLL 164 (206)
Q Consensus 100 ~l~V~nLp~~~te~~L~~~-------F~~~-G~v~~v~------i~~~~~g~~~G-~afV~f~~~~~A~~Ai~~l~g~~i 164 (206)
++|| |.++++++++..+ +... |.|..+. +-+.-.+...| |.++.|....++.+.++. ...+
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler--~lri 85 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK--ALKL 85 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH--HhCC
Confidence 4555 5667777666544 4343 4555543 22222344555 578888876676666665 3345
Q ss_pred CCeeEE
Q 028651 165 DGKPMK 170 (206)
Q Consensus 165 ~g~~i~ 170 (206)
+...|+
T Consensus 86 ~e~VlR 91 (97)
T CHL00123 86 DENVLR 91 (97)
T ss_pred CCCeEE
Confidence 554443
No 196
>KOG3428 consensus Small nuclear ribonucleoprotein SMD1 and related snRNPs [RNA processing and modification]
Probab=20.95 E-value=43 Score=23.73 Aligned_cols=7 Identities=29% Similarity=0.643 Sum_probs=2.7
Q ss_pred CHHHHHh
Q 028651 8 SLDDIIK 14 (206)
Q Consensus 8 sld~ii~ 14 (206)
-||-++.
T Consensus 74 ~ld~Llv 80 (109)
T KOG3428|consen 74 NLDTLLV 80 (109)
T ss_pred Ccceeee
Confidence 3444433
No 197
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=20.86 E-value=2.9e+02 Score=18.90 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=27.0
Q ss_pred EEEEeCCCCCCcHHHHH---HHHhccCCeEEEEEE--E-CCCCCCceEEEEEE
Q 028651 100 KLYVSNLHPGVTNDDIR---ELFSEIGELKRYAIH--F-DKNGRPSGSAEVVY 146 (206)
Q Consensus 100 ~l~V~nLp~~~te~~L~---~~F~~~G~v~~v~i~--~-~~~g~~~G~afV~f 146 (206)
..|+.|||..+.+..+. ..|..+..-..|... . .......|++.+-+
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEE
Confidence 45889999999987664 555555544444441 1 22556667665443
No 198
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=20.51 E-value=1.7e+02 Score=17.10 Aligned_cols=26 Identities=19% Similarity=0.470 Sum_probs=21.5
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCC
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGE 124 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~ 124 (206)
..++|.+.....+.++|.+++..+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 46788887767888999999998886
No 199
>PF06515 BDV_P10: Borna disease virus P10 protein; InterPro: IPR009485 This family consists of several Borna disease virus P10 (or X) proteins. Borna disease virus (BDV) is unique among the non-segmented negative-strand RNA viruses of animals and man because it transcribes and replicates its genome in the nucleus of the infected cell. It has been suggested that the p10 protein plays a role in viral RNA synthesis or ribonucleoprotein transport [].
Probab=20.51 E-value=77 Score=21.15 Aligned_cols=17 Identities=18% Similarity=0.524 Sum_probs=14.7
Q ss_pred CCCCCCCCHHHHHhhcC
Q 028651 1 MATHVDMSLDDIIKSRK 17 (206)
Q Consensus 1 m~~~~~~sld~ii~~~~ 17 (206)
|+.+|++.|=|+|..-+
T Consensus 1 Mss~L~LTLLELiRRlN 17 (87)
T PF06515_consen 1 MSSDLELTLLELIRRLN 17 (87)
T ss_pred CCcchHhHHHHHHHHhc
Confidence 89999999999999443
No 200
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=20.14 E-value=2.1e+02 Score=19.28 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=19.5
Q ss_pred CeEEEEEEECC-CCCCceEEEEEEcc
Q 028651 124 ELKRYAIHFDK-NGRPSGSAEVVYAR 148 (206)
Q Consensus 124 ~v~~v~i~~~~-~g~~~G~afV~f~~ 148 (206)
+|.+|+|..-. .++.+++|-|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 36678887766 58889999999986
Done!